Query 044658
Match_columns 364
No_of_seqs 206 out of 1218
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:26:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2.4E-36 5.3E-41 280.7 30.4 316 4-327 9-333 (358)
2 PRK11272 putative DMT superfam 100.0 9.9E-33 2.1E-37 252.4 28.0 287 1-325 1-288 (292)
3 PRK11453 O-acetylserine/cystei 100.0 6E-32 1.3E-36 248.1 27.9 280 9-325 5-290 (299)
4 PRK11689 aromatic amino acid e 100.0 1.6E-31 3.4E-36 244.8 25.7 284 6-324 2-289 (295)
5 PRK15430 putative chlorampheni 100.0 1E-31 2.2E-36 246.1 24.1 281 1-322 1-285 (296)
6 PRK10532 threonine and homoser 100.0 6.1E-31 1.3E-35 240.6 28.4 279 3-326 7-285 (293)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 1.1E-30 2.5E-35 235.2 26.1 258 20-317 1-259 (260)
8 TIGR00817 tpt Tpt phosphate/ph 100.0 4E-29 8.6E-34 230.0 25.4 283 11-326 5-297 (302)
9 TIGR03340 phn_DUF6 phosphonate 100.0 1.3E-27 2.8E-32 217.5 25.9 274 10-319 3-280 (281)
10 PF06027 DUF914: Eukaryotic pr 100.0 3.9E-27 8.5E-32 214.6 28.2 301 5-330 10-313 (334)
11 PTZ00343 triose or hexose phos 100.0 1.9E-26 4.1E-31 215.4 26.7 284 6-323 47-349 (350)
12 TIGR00688 rarD rarD protein. T 99.9 1.7E-25 3.6E-30 201.0 23.4 248 8-297 2-255 (256)
13 COG0697 RhaT Permeases of the 99.9 2.7E-23 5.8E-28 189.9 29.1 284 4-323 3-288 (292)
14 COG2962 RarD Predicted permeas 99.9 9.5E-24 2.1E-28 183.3 22.3 282 1-324 1-285 (293)
15 COG5006 rhtA Threonine/homoser 99.9 1.5E-22 3.2E-27 171.2 25.0 274 9-326 13-286 (292)
16 KOG4510 Permease of the drug/m 99.9 9.2E-24 2E-28 179.5 4.6 290 5-322 35-325 (346)
17 TIGR00776 RhaT RhaT L-rhamnose 99.9 9.5E-21 2.1E-25 172.6 23.4 278 9-322 2-288 (290)
18 PF08449 UAA: UAA transporter 99.9 5.3E-19 1.2E-23 162.5 25.9 266 37-327 32-302 (303)
19 KOG2765 Predicted membrane pro 99.8 1.6E-19 3.6E-24 161.0 19.3 299 5-326 11-394 (416)
20 KOG1441 Glucose-6-phosphate/ph 99.8 6.8E-19 1.5E-23 158.7 10.6 281 16-329 25-314 (316)
21 KOG1580 UDP-galactose transpor 99.7 8.2E-17 1.8E-21 134.9 16.1 264 37-328 53-319 (337)
22 COG2510 Predicted membrane pro 99.7 1.4E-16 3E-21 121.1 12.0 134 9-150 4-138 (140)
23 KOG2234 Predicted UDP-galactos 99.7 1.4E-13 3E-18 123.5 27.7 298 8-326 15-326 (345)
24 KOG2766 Predicted membrane pro 99.7 6.5E-17 1.4E-21 137.1 4.4 285 5-324 15-301 (336)
25 PF04142 Nuc_sug_transp: Nucle 99.6 1.9E-14 4.1E-19 127.2 18.1 231 68-313 13-244 (244)
26 COG2510 Predicted membrane pro 99.6 2.2E-14 4.8E-19 109.1 13.5 136 184-322 4-139 (140)
27 KOG1581 UDP-galactose transpor 99.6 3.7E-14 8.1E-19 123.8 15.9 265 36-326 50-317 (327)
28 KOG1443 Predicted integral mem 99.6 1.2E-12 2.7E-17 114.3 22.9 255 34-320 41-313 (349)
29 KOG1444 Nucleotide-sugar trans 99.6 1.4E-12 3.1E-17 115.5 22.9 287 7-327 11-305 (314)
30 KOG1442 GDP-fucose transporter 99.5 3.1E-14 6.7E-19 122.2 8.8 264 37-329 61-334 (347)
31 PF00892 EamA: EamA-like trans 99.5 2.6E-14 5.6E-19 113.6 7.4 125 18-150 1-125 (126)
32 PF00892 EamA: EamA-like trans 99.4 4.5E-13 9.8E-18 106.3 9.6 125 193-321 1-125 (126)
33 KOG3912 Predicted integral mem 99.4 3.1E-11 6.7E-16 104.3 17.9 279 21-321 16-333 (372)
34 COG5070 VRG4 Nucleotide-sugar 99.4 5.4E-12 1.2E-16 105.3 10.9 273 25-326 23-300 (309)
35 PF06800 Sugar_transport: Suga 99.3 7.3E-10 1.6E-14 97.8 23.4 254 35-319 10-268 (269)
36 TIGR00950 2A78 Carboxylate/Ami 99.3 4.7E-11 1E-15 107.4 13.9 134 5-147 125-260 (260)
37 PF05653 Mg_trans_NIPA: Magnes 99.2 1.1E-09 2.5E-14 99.7 17.1 277 4-325 3-295 (300)
38 KOG1583 UDP-N-acetylglucosamin 99.2 2E-10 4.2E-15 99.2 11.0 265 37-323 33-315 (330)
39 KOG4314 Predicted carbohydrate 99.2 1.1E-10 2.4E-15 95.8 8.8 213 84-325 64-279 (290)
40 PF13536 EmrE: Multidrug resis 99.2 3E-11 6.5E-16 94.3 5.0 104 42-152 2-107 (113)
41 PRK13499 rhamnose-proton sympo 99.2 1.3E-08 2.8E-13 93.5 22.9 300 5-323 4-342 (345)
42 PRK15430 putative chlorampheni 99.2 5.9E-10 1.3E-14 102.2 13.7 138 180-321 5-144 (296)
43 PF03151 TPT: Triose-phosphate 99.1 1.2E-09 2.6E-14 90.0 13.2 138 184-322 1-153 (153)
44 PRK10532 threonine and homoser 99.1 1.7E-09 3.6E-14 99.1 14.0 138 6-153 146-283 (293)
45 TIGR00688 rarD rarD protein. T 99.1 1.6E-09 3.5E-14 97.3 13.2 136 183-321 2-141 (256)
46 PRK11272 putative DMT superfam 99.1 1.7E-09 3.7E-14 99.0 12.5 138 6-151 148-285 (292)
47 PLN00411 nodulin MtN21 family 99.1 3.1E-09 6.8E-14 99.4 14.2 139 7-154 188-331 (358)
48 TIGR03340 phn_DUF6 phosphonate 99.0 7.8E-09 1.7E-13 94.1 15.4 134 185-323 3-136 (281)
49 COG4975 GlcU Putative glucose 99.0 2E-10 4.3E-15 97.6 3.4 280 8-323 2-286 (288)
50 PRK11689 aromatic amino acid e 99.0 3.9E-09 8.4E-14 96.8 12.1 133 7-151 155-287 (295)
51 KOG1582 UDP-galactose transpor 99.0 2E-08 4.3E-13 86.7 14.5 262 34-327 70-337 (367)
52 TIGR00803 nst UDP-galactose tr 98.9 3.9E-09 8.5E-14 92.6 9.3 211 100-320 5-222 (222)
53 PRK02971 4-amino-4-deoxy-L-ara 98.9 6.7E-08 1.5E-12 76.5 13.1 122 184-326 3-126 (129)
54 PRK11453 O-acetylserine/cystei 98.9 4.3E-08 9.4E-13 90.1 13.4 139 7-151 142-287 (299)
55 PF13536 EmrE: Multidrug resis 98.8 1.9E-08 4.2E-13 78.3 8.8 107 218-325 3-109 (113)
56 COG2962 RarD Predicted permeas 98.8 5.6E-08 1.2E-12 85.4 11.1 143 181-326 5-148 (293)
57 TIGR00817 tpt Tpt phosphate/ph 98.8 3.5E-08 7.5E-13 90.9 10.0 140 6-151 143-293 (302)
58 PF03151 TPT: Triose-phosphate 98.7 2.5E-07 5.3E-12 76.2 12.6 134 9-149 1-151 (153)
59 KOG2922 Uncharacterized conser 98.7 2.2E-08 4.7E-13 88.9 4.7 278 5-326 18-310 (335)
60 PTZ00343 triose or hexose phos 98.7 8.8E-07 1.9E-11 83.1 15.4 138 183-322 49-186 (350)
61 PRK15051 4-amino-4-deoxy-L-ara 98.6 4.9E-07 1.1E-11 69.9 9.8 67 255-321 42-108 (111)
62 TIGR00776 RhaT RhaT L-rhamnose 98.6 4.7E-07 1E-11 82.7 11.3 129 7-151 151-288 (290)
63 COG0697 RhaT Permeases of the 98.5 1.8E-06 3.8E-11 78.6 13.1 134 7-151 153-287 (292)
64 PRK15051 4-amino-4-deoxy-L-ara 98.5 4.2E-07 9.1E-12 70.2 6.3 67 78-150 42-108 (111)
65 PRK02971 4-amino-4-deoxy-L-ara 98.4 3.1E-06 6.7E-11 67.1 9.9 119 8-151 2-122 (129)
66 COG5006 rhtA Threonine/homoser 98.3 5.3E-06 1.1E-10 71.4 9.8 137 6-151 146-282 (292)
67 PF06027 DUF914: Eukaryotic pr 98.3 2.6E-05 5.6E-10 71.9 15.1 143 4-154 164-308 (334)
68 PRK10452 multidrug efflux syst 98.1 5.1E-05 1.1E-09 59.0 10.6 70 256-325 36-106 (120)
69 PF08449 UAA: UAA transporter 97.9 0.00018 3.9E-09 66.2 13.4 127 195-327 12-141 (303)
70 PRK09541 emrE multidrug efflux 97.9 0.00016 3.5E-09 55.5 10.5 68 257-324 37-105 (110)
71 PF06379 RhaT: L-rhamnose-prot 97.9 0.0019 4.2E-08 58.8 18.8 301 5-323 4-341 (344)
72 KOG4510 Permease of the drug/m 97.8 6.4E-06 1.4E-10 71.4 1.2 136 180-323 35-170 (346)
73 PF04657 DUF606: Protein of un 97.8 0.00044 9.6E-09 55.6 11.6 132 184-319 2-138 (138)
74 PF05653 Mg_trans_NIPA: Magnes 97.8 0.00012 2.7E-09 66.9 9.3 120 179-323 3-123 (300)
75 PF06800 Sugar_transport: Suga 97.7 0.00049 1.1E-08 61.1 11.3 118 4-129 134-251 (269)
76 COG3238 Uncharacterized protei 97.6 0.0013 2.9E-08 52.9 11.4 139 182-323 4-147 (150)
77 PF10639 UPF0546: Uncharacteri 97.6 0.00023 4.9E-09 54.5 6.6 110 14-149 2-112 (113)
78 PRK10650 multidrug efflux syst 97.6 0.0015 3.2E-08 50.0 10.7 64 258-321 43-107 (109)
79 PRK10650 multidrug efflux syst 97.6 0.00054 1.2E-08 52.4 8.3 62 83-150 45-107 (109)
80 PRK11431 multidrug efflux syst 97.5 0.0012 2.6E-08 50.2 9.7 66 257-322 36-102 (105)
81 COG2076 EmrE Membrane transpor 97.5 0.00037 8.1E-09 52.4 6.8 66 259-324 39-105 (106)
82 KOG1441 Glucose-6-phosphate/ph 97.5 0.0005 1.1E-08 62.8 8.8 139 5-151 160-307 (316)
83 KOG2765 Predicted membrane pro 97.4 0.0015 3.3E-08 59.7 10.4 143 4-152 243-391 (416)
84 PRK10452 multidrug efflux syst 97.4 0.00029 6.3E-09 54.9 4.8 67 79-151 36-103 (120)
85 PF00893 Multi_Drug_Res: Small 97.4 0.0014 3.1E-08 48.8 8.3 56 258-313 37-93 (93)
86 PF04657 DUF606: Protein of un 97.4 0.0024 5.3E-08 51.3 10.1 130 10-148 3-138 (138)
87 COG2076 EmrE Membrane transpor 97.3 0.00034 7.4E-09 52.7 4.7 65 81-151 38-103 (106)
88 PRK09541 emrE multidrug efflux 97.3 0.00048 1E-08 52.9 5.5 66 80-151 37-103 (110)
89 PRK11431 multidrug efflux syst 97.3 0.00053 1.2E-08 52.1 5.2 64 81-150 37-101 (105)
90 PF04142 Nuc_sug_transp: Nucle 97.2 0.0012 2.6E-08 58.6 7.8 80 247-327 15-94 (244)
91 PF07857 DUF1632: CEO family ( 96.8 0.005 1.1E-07 54.5 7.3 132 184-327 1-139 (254)
92 PF10639 UPF0546: Uncharacteri 96.7 0.019 4E-07 44.1 9.0 109 190-320 3-112 (113)
93 PF07857 DUF1632: CEO family ( 96.4 0.033 7.1E-07 49.4 10.2 184 9-208 1-208 (254)
94 PF00893 Multi_Drug_Res: Small 96.3 0.0051 1.1E-07 45.8 3.8 55 82-142 38-93 (93)
95 PRK13499 rhamnose-proton sympo 96.2 0.17 3.6E-06 47.1 14.1 145 5-151 171-341 (345)
96 KOG2234 Predicted UDP-galactos 95.9 0.38 8.2E-06 44.3 14.3 141 183-324 15-166 (345)
97 COG4975 GlcU Putative glucose 95.9 0.0066 1.4E-07 52.5 2.8 134 184-327 3-141 (288)
98 KOG1581 UDP-galactose transpor 95.3 0.11 2.5E-06 46.5 8.6 139 5-151 169-313 (327)
99 KOG4314 Predicted carbohydrate 95.3 0.014 3.1E-07 48.7 2.8 66 262-327 65-130 (290)
100 COG3238 Uncharacterized protei 95.3 0.23 5.1E-06 40.1 9.6 137 7-150 4-145 (150)
101 TIGR00803 nst UDP-galactose tr 95.2 0.041 8.9E-07 48.1 5.8 64 78-148 158-221 (222)
102 KOG4831 Unnamed protein [Funct 94.5 0.35 7.5E-06 36.1 7.9 112 11-150 6-124 (125)
103 KOG2922 Uncharacterized conser 94.5 0.022 4.8E-07 51.3 2.0 123 178-324 16-138 (335)
104 KOG1580 UDP-galactose transpor 94.3 0.77 1.7E-05 39.8 10.7 137 5-151 169-313 (337)
105 KOG1444 Nucleotide-sugar trans 93.8 1.4 3E-05 40.1 11.9 134 183-322 12-149 (314)
106 KOG1443 Predicted integral mem 92.9 1.1 2.3E-05 40.5 9.7 124 202-326 35-160 (349)
107 PF06379 RhaT: L-rhamnose-prot 91.8 0.85 1.8E-05 41.9 7.9 141 180-324 4-155 (344)
108 KOG1442 GDP-fucose transporter 91.2 0.5 1.1E-05 41.9 5.6 141 6-153 183-329 (347)
109 COG5070 VRG4 Nucleotide-sugar 89.7 1.4 3E-05 37.9 6.8 111 34-151 182-296 (309)
110 KOG2766 Predicted membrane pro 87.5 0.13 2.7E-06 45.1 -0.8 137 181-325 16-153 (336)
111 PF07168 Ureide_permease: Urei 85.2 1.2 2.7E-05 40.1 4.1 132 189-323 2-147 (336)
112 KOG3912 Predicted integral mem 84.9 1.3 2.8E-05 39.6 4.0 65 259-323 95-159 (372)
113 KOG1582 UDP-galactose transpor 82.2 5.3 0.00012 35.6 6.7 140 6-153 188-334 (367)
114 PRK02237 hypothetical protein; 81.7 8.6 0.00019 29.1 6.7 45 280-324 63-107 (109)
115 PF02694 UPF0060: Uncharacteri 76.9 4.7 0.0001 30.4 4.1 46 280-325 61-106 (107)
116 PF06570 DUF1129: Protein of u 76.2 48 0.001 28.4 10.9 32 70-102 144-175 (206)
117 PF04342 DUF486: Protein of un 75.8 3.3 7.2E-05 31.1 3.0 30 291-320 77-106 (108)
118 PRK02237 hypothetical protein; 75.5 33 0.00072 26.0 9.5 56 90-151 48-105 (109)
119 PF02694 UPF0060: Uncharacteri 74.0 36 0.00078 25.7 8.4 56 90-151 47-103 (107)
120 PF05297 Herpes_LMP1: Herpesvi 72.5 1.2 2.6E-05 39.6 0.0 27 118-150 70-96 (381)
121 COG3169 Uncharacterized protei 71.5 9 0.00019 28.3 4.3 32 291-322 84-115 (116)
122 PF07168 Ureide_permease: Urei 68.0 6.3 0.00014 35.7 3.5 129 13-148 1-143 (336)
123 KOG4831 Unnamed protein [Funct 66.3 14 0.00031 27.7 4.5 57 263-320 65-123 (125)
124 PF05977 MFS_3: Transmembrane 63.8 1.6E+02 0.0035 29.3 14.3 17 281-297 351-367 (524)
125 KOG1583 UDP-N-acetylglucosamin 63.4 10 0.00022 34.0 3.9 69 262-330 76-145 (330)
126 PF15102 TMEM154: TMEM154 prot 63.3 8.5 0.00018 30.9 3.1 24 307-330 66-89 (146)
127 COG4858 Uncharacterized membra 62.3 95 0.0021 26.1 9.2 114 9-129 101-220 (226)
128 PF08507 COPI_assoc: COPI asso 59.4 16 0.00035 29.1 4.2 16 305-320 88-103 (136)
129 PF04342 DUF486: Protein of un 57.4 42 0.00092 25.3 5.7 31 113-149 76-106 (108)
130 COG1742 Uncharacterized conser 57.3 81 0.0018 23.8 8.4 40 106-151 65-104 (109)
131 COG1742 Uncharacterized conser 55.0 50 0.0011 24.9 5.7 46 280-325 62-107 (109)
132 TIGR03644 marine_trans_1 proba 53.8 2.1E+02 0.0046 27.5 15.6 63 252-315 296-361 (404)
133 PRK06638 NADH:ubiquinone oxido 52.8 1.5E+02 0.0032 25.4 14.1 33 291-323 133-167 (198)
134 COG4657 RnfA Predicted NADH:ub 50.9 48 0.001 27.1 5.5 67 141-231 114-185 (193)
135 COG3086 RseC Positive regulato 50.2 6.7 0.00015 31.3 0.6 27 271-297 69-95 (150)
136 PF05961 Chordopox_A13L: Chord 50.0 5.3 0.00012 27.2 -0.0 24 306-329 6-29 (68)
137 PRK10666 ammonium transporter; 43.0 3.2E+02 0.007 26.5 15.4 52 182-234 304-355 (428)
138 COG3169 Uncharacterized protei 42.3 1.4E+02 0.0031 22.2 7.2 31 114-150 84-114 (116)
139 PF03547 Mem_trans: Membrane t 41.3 3.1E+02 0.0067 25.8 11.7 22 249-270 62-83 (385)
140 PF03595 SLAC1: Voltage-depend 41.1 2.2E+02 0.0047 26.2 9.3 76 136-231 7-90 (330)
141 PF07214 DUF1418: Protein of u 40.6 43 0.00093 24.8 3.4 12 308-319 44-55 (96)
142 PHA03049 IMV membrane protein; 39.4 14 0.00029 25.2 0.6 23 306-328 6-28 (68)
143 PRK13108 prolipoprotein diacyl 38.5 3.9E+02 0.0085 26.2 18.5 24 302-325 254-277 (460)
144 COG2917 Intracellular septatio 37.1 56 0.0012 27.1 4.0 86 90-203 13-98 (180)
145 COG3965 Predicted Co/Zn/Cd cat 36.7 3.2E+02 0.0068 24.6 10.9 111 15-129 101-217 (314)
146 PF15471 TMEM171: Transmembran 35.7 32 0.0007 30.5 2.5 24 304-327 161-184 (319)
147 PF08693 SKG6: Transmembrane a 35.4 34 0.00074 20.9 1.9 19 308-326 21-39 (40)
148 PF03348 Serinc: Serine incorp 34.5 4.4E+02 0.0095 25.6 20.5 58 255-325 249-306 (429)
149 PF14851 FAM176: FAM176 family 27.0 91 0.002 25.4 3.6 6 276-281 19-24 (153)
150 TIGR02865 spore_II_E stage II 25.3 8.2E+02 0.018 25.8 13.9 44 100-149 11-54 (764)
151 PF07444 Ycf66_N: Ycf66 protei 24.6 44 0.00095 24.2 1.3 25 301-325 4-28 (84)
152 PF04246 RseC_MucC: Positive r 24.4 22 0.00048 28.2 -0.3 22 276-297 67-88 (135)
153 PF05255 UPF0220: Uncharacteri 23.0 4.4E+02 0.0095 21.8 8.3 58 69-151 20-77 (166)
154 PF06570 DUF1129: Protein of u 22.1 2.7E+02 0.0058 23.8 6.0 24 9-32 112-135 (206)
155 PF11381 DUF3185: Protein of u 21.9 54 0.0012 22.0 1.2 17 136-152 2-18 (59)
156 TIGR01167 LPXTG_anchor LPXTG-m 21.7 1.1E+02 0.0024 17.3 2.4 14 303-316 11-24 (34)
157 MTH00057 ND6 NADH dehydrogenas 21.6 4.9E+02 0.011 21.9 10.9 33 291-323 132-166 (186)
158 PRK10862 SoxR reducing system 21.4 29 0.00063 28.3 -0.2 19 278-296 76-94 (154)
159 TIGR02840 spore_YtaF putative 20.9 98 0.0021 26.6 3.0 47 275-321 32-80 (206)
160 KOG1623 Multitransmembrane pro 20.4 6.1E+02 0.013 22.5 8.8 32 179-210 124-155 (243)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=280.74 Aligned_cols=316 Identities=28% Similarity=0.562 Sum_probs=248.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCCHHHHHHHHHHHHHH
Q 044658 4 CRQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWER-KSRPKLTVPILCQLFFSALTG 82 (364)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~ 82 (364)
+|..+.+..+++..+.++...++.|...+.+++|+.+.++|+.++.++++++.+.+++ +++++.+++++..+.+.|+++
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLG 88 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999998866544 333445688889999999998
Q ss_pred HHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhh------ccccccccccccccchhHHHHHHhhhhhheeccCCc
Q 044658 83 VTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPF------RLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKP 156 (364)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~------l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~ 156 (364)
.+++.+++.|++|++++.++++.++.|++++++++++ ++||+++.+ ++|++++++|+.++...++..
T Consensus 89 -~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~------~~G~~l~~~Gv~ll~~~~g~~ 161 (358)
T PLN00411 89 -SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAK------VMGTILSLIGALVVIFYHGPR 161 (358)
T ss_pred -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHH------HHHHHHHHHHHHHHHHccCcc
Confidence 7888899999999999999999999999999999999 599999999 999999999999987533321
Q ss_pred cccccccccccccccc-CCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 044658 157 FYLGATNHMTNDVNTM-NSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVE 235 (364)
Q Consensus 157 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (364)
....+.+.-.+..... ..+....+...|++++++++++|++|.+.+|+..+++++....++++..++.+...+.....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~ 241 (358)
T PLN00411 162 VFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVE 241 (358)
T ss_pred cccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHc
Confidence 1000000000000000 011112334669999999999999999999999888866566777777777777666666544
Q ss_pred c-CCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHH
Q 044658 236 R-NPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVV 314 (364)
Q Consensus 236 ~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~ 314 (364)
. +...+..........+++.++. +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|+++|+
T Consensus 242 ~~~~~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl 320 (358)
T PLN00411 242 KNNPSVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILIT 320 (358)
T ss_pred cCCcccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 3 1222221112234457777765 6789999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhheecCccc
Q 044658 315 IGLYILLWGKSKE 327 (364)
Q Consensus 315 ~g~~l~~~~~~~~ 327 (364)
.|+++..+.++|+
T Consensus 321 ~Gv~l~~~~~~~~ 333 (358)
T PLN00411 321 LGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHhhhhhh
Confidence 9999998765544
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=9.9e-33 Score=252.43 Aligned_cols=287 Identities=13% Similarity=0.156 Sum_probs=237.0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH
Q 044658 1 MDCCRQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSAL 80 (364)
Q Consensus 1 m~~~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (364)
|+-++-..-++..++..++||++++..|...+ +++|..++++|+.++.++++++...++ ++ ..+++++......|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~~-~~--~~~~~~~~~~~~~g~ 76 (292)
T PRK11272 1 MRFRQLLPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLRG-HP--LPTLRQWLNAALIGL 76 (292)
T ss_pred CchHHHHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHhC-CC--CCcHHHHHHHHHHHH
Confidence 33333444566788999999999999999888 699999999999999999888765432 22 235678888888888
Q ss_pred HHHHHHHHHHHHhc-cccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccc
Q 044658 81 TGVTLAQYFFLLGF-EYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYL 159 (364)
Q Consensus 81 ~~~~~~~~~~~~al-~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~ 159 (364)
++...++.+++++. ++++++.++++.++.|+++++++++ +|||+++++ ++|+.++++|+.++... +.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~------~~~~~la~~Gv~ll~~~-~~---- 144 (292)
T PRK11272 77 LLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLE------WLGIAIGLAGIVLLNSG-GN---- 144 (292)
T ss_pred HHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhH------HHHHHHHHHhHHHHhcC-cc----
Confidence 87677888999999 9999999999999999999999986 699999999 99999999999988631 11
Q ss_pred cccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044658 160 GATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPA 239 (364)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (364)
.+....|++++++++++||.+.+..|+..++ ++...+.+++..+.+...+.....+.+..
T Consensus 145 ------------------~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (292)
T PRK11272 145 ------------------LSGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERLT 204 (292)
T ss_pred ------------------cccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 1123579999999999999999999997654 34556778888888877776554332211
Q ss_pred cccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhh
Q 044658 240 GWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYI 319 (364)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l 319 (364)
...+...|..+++.+++++.+++.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++++.|+++
T Consensus 205 --~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~ 282 (292)
T PRK11272 205 --ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVL 282 (292)
T ss_pred --ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 112346788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heecCc
Q 044658 320 LLWGKS 325 (364)
Q Consensus 320 ~~~~~~ 325 (364)
..+.++
T Consensus 283 ~~~~~~ 288 (292)
T PRK11272 283 VTLGKY 288 (292)
T ss_pred HHHHHh
Confidence 876443
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=6e-32 Score=248.07 Aligned_cols=280 Identities=17% Similarity=0.167 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044658 9 PIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQY 88 (364)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (364)
..++.++++++||.++++.|...+ +++|..+.++|+.++.+.++++. + +++ .+++ ..+..|++.....+.
T Consensus 5 ~~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~--~-~~~---~~~~---~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 5 DGVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV--A-RPK---VPLN---LLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh--c-CCC---CchH---HHHHHHHHHHHHHHH
Confidence 346688999999999999999988 59999999999999877665543 1 111 1222 334456554355666
Q ss_pred HHHHhccc-cCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccc
Q 044658 89 FFLLGFEY-TTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTN 167 (364)
Q Consensus 89 ~~~~al~~-~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~ 167 (364)
+++.+++| .+++.++++.++.|+++.+++++++|||+++++ ++|+.++++|+.++... +...
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~------~~~~~l~~~Gv~ll~~~-~~~~---------- 137 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQ------LAGIALAIFGVLVLIED-SLNG---------- 137 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHhHHHhccc-cCCC----------
Confidence 77889988 578899999999999999999999999999999 99999999999998731 1100
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCc--hhHHHHHHHHHHHHHHHHHHHhhcCC---Cccc
Q 044658 168 DVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCK--YSSTAIMALFGAIQSAVLSLIVERNP---AGWA 242 (364)
Q Consensus 168 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 242 (364)
......|++++++++++|+.|.+..|+..++.+++ .....+....+.+.........+.+. ..+.
T Consensus 138 ----------~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (299)
T PRK11453 138 ----------QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLV 207 (299)
T ss_pred ----------cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 11235799999999999999999999987654322 23334444444433333333322211 1122
Q ss_pred ccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 243 MKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
..+...|..++++++++++++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|++++++|+++..+
T Consensus 208 ~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 208 TIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 23456799999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cCc
Q 044658 323 GKS 325 (364)
Q Consensus 323 ~~~ 325 (364)
.++
T Consensus 288 ~~~ 290 (299)
T PRK11453 288 GLR 290 (299)
T ss_pred chh
Confidence 554
No 4
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=1.6e-31 Score=244.77 Aligned_cols=284 Identities=11% Similarity=0.085 Sum_probs=214.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 044658 6 QWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTL 85 (364)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (364)
+.+++++++++.++||.+++..|...+ +++|..+.++|+.++.+++.++. . +++.+ ++++. ....+.+....
T Consensus 2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~--~-~~~~~---~~~~~-~~~~~~l~~~~ 73 (295)
T PRK11689 2 SQKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV--G-FPRLR---QFPKR-YLLAGGLLFVS 73 (295)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc--c-ccccc---cccHH-HHHHHhHHHHH
Confidence 567788999999999999999999988 59999999999999999887653 1 11111 11222 23344444577
Q ss_pred HHHHHHHhccc----cCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccc
Q 044658 86 AQYFFLLGFEY----TTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGA 161 (364)
Q Consensus 86 ~~~~~~~al~~----~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~ 161 (364)
++.+++.+++| .+++.++++.++.|+++.+++++++|||+++++ ++|+.++++|+.++...+ ...+.
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~------~~g~~l~~~Gv~li~~~~-~~~~~-- 144 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLL------IPGLLLALAGVAWVLGGD-NGLSL-- 144 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHH------HHHHHHHHHhHhheecCC-ccchh--
Confidence 77788877765 567778899999999999999999999999999 999999999999997421 11100
Q ss_pred cccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 044658 162 TNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGW 241 (364)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (364)
.+. .....+...|++++++++++||.|.++.||..++. ++.... ...+.+.+.+.....+ .. .
T Consensus 145 --------~~~--~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~-~~--~ 207 (295)
T PRK11689 145 --------AEL--INNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSP-QP--A 207 (295)
T ss_pred --------hhh--hhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhc-Cc--c
Confidence 000 00011235699999999999999999999987665 444432 2223333333223222 11 1
Q ss_pred cccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhe
Q 044658 242 AMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILL 321 (364)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~ 321 (364)
...+...|..+++.++ +++++|.+|++++|+.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..
T Consensus 208 ~~~~~~~~~~l~~~~~-~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 208 MVFSLPAIIKLLLAAA-AMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCW 286 (295)
T ss_pred ccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHh
Confidence 1223456777777774 789999999999999999999999999999999999999999999999999999999998886
Q ss_pred ecC
Q 044658 322 WGK 324 (364)
Q Consensus 322 ~~~ 324 (364)
..+
T Consensus 287 ~~~ 289 (295)
T PRK11689 287 LAT 289 (295)
T ss_pred hhH
Confidence 544
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=100.00 E-value=1e-31 Score=246.09 Aligned_cols=281 Identities=13% Similarity=0.104 Sum_probs=211.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCHHHHHHHHH
Q 044658 1 MDCCRQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSR---PKLTVPILCQLFF 77 (364)
Q Consensus 1 m~~~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (364)
|+++++.+|++++++++++||..+++.|.. + +++|.++.++|+.++.+++.++...+++++. ...+++++....
T Consensus 1 ~~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 77 (296)
T PRK15430 1 MDAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLA- 77 (296)
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHH-
Confidence 788899999999999999999999999975 5 5999999999999999888776644321111 001344443333
Q ss_pred HHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcc
Q 044658 78 SALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPF 157 (364)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~ 157 (364)
.+.++.++++.++++|++++++++++++.++.|+++++++++++|||+++++ +.|+.++++|+.++...++
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~------~~g~~l~~~Gv~li~~~~~--- 148 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQ------WLAVILAICGVLVQLWTFG--- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH------HHHHHHHHHHHHHHHHHcC---
Confidence 5555568899999999999999999999999999999999999999999999 9999999999999863111
Q ss_pred cccccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhhc
Q 044658 158 YLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVER 236 (364)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (364)
+. ..++++++++|+.|.+..|+..++.. +....+.+....+.+...+. ...
T Consensus 149 ---------------------~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 200 (296)
T PRK15430 149 ---------------------SL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADS 200 (296)
T ss_pred ---------------------Cc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccC
Confidence 00 14688899999999999998754311 11222233333333222111 111
Q ss_pred CCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHh
Q 044658 237 NPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIG 316 (364)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g 316 (364)
....+. .++..++..++.+.+.+.++|.+|++++++.+++.++.+.+++|+++.+++++++||++++.+++|+++|++|
T Consensus 201 ~~~~~~-~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~ 279 (296)
T PRK15430 201 STSHMG-QNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVA 279 (296)
T ss_pred Cccccc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 111111 1122223334433346889999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhee
Q 044658 317 LYILLW 322 (364)
Q Consensus 317 ~~l~~~ 322 (364)
+.+...
T Consensus 280 ~~v~~~ 285 (296)
T PRK15430 280 LAIFVM 285 (296)
T ss_pred HHHHHH
Confidence 877754
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=100.00 E-value=6.1e-31 Score=240.65 Aligned_cols=279 Identities=13% Similarity=0.144 Sum_probs=225.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 044658 3 CCRQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTG 82 (364)
Q Consensus 3 ~~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (364)
+.++.+++.+++++.++|+....+.|...++ .+|..+.++|++++.++++++.. +++. +.+++++...+..|++.
T Consensus 7 ~~~~~~~~~~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~--~~~~--~~~~~~~~~~~~~g~~~ 81 (293)
T PRK10532 7 KLPVWLPILLLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFK--PWRL--RFAKEQRLPLLFYGVSL 81 (293)
T ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHh--HHhc--cCCHHHHHHHHHHHHHH
Confidence 3466889999999999999999999999995 99999999999999988887652 1221 34578888888888885
Q ss_pred HHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccc
Q 044658 83 VTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGAT 162 (364)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~ 162 (364)
...+.++++++++++++.++++..+.|+++.+++. |+++ + ..++.++++|+.++... +...
T Consensus 82 -~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~------~~~~~i~~~Gv~li~~~-~~~~----- 142 (293)
T PRK10532 82 -GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--D------FVWVVLAVLGLWFLLPL-GQDV----- 142 (293)
T ss_pred -HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--H------HHHHHHHHHHHheeeec-CCCc-----
Confidence 88889999999999999999999999999998873 4443 3 55677889999988631 1111
Q ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 044658 163 NHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWA 242 (364)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (364)
+..+..|++++++++++|+.|.+..|+..++. ++... .+...++.+.+.+.....+. . .
T Consensus 143 ---------------~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~---~-~ 201 (293)
T PRK10532 143 ---------------SHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAG---E-A 201 (293)
T ss_pred ---------------ccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccC---c-c
Confidence 11235799999999999999999999998765 35554 45556666666665544321 1 1
Q ss_pred ccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 243 MKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
..+...|..+++++++++.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|++|++...+
T Consensus 202 ~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 202 LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 12334566678999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCcc
Q 044658 323 GKSK 326 (364)
Q Consensus 323 ~~~~ 326 (364)
..++
T Consensus 282 ~~~~ 285 (293)
T PRK10532 282 TIRR 285 (293)
T ss_pred cCCC
Confidence 5544
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=100.00 E-value=1.1e-30 Score=235.24 Aligned_cols=258 Identities=17% Similarity=0.249 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 044658 20 LAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTA 99 (364)
Q Consensus 20 ~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 99 (364)
||.+++..|...+++.|+....+.|++.+.+++.++... + .+++++.+....|.++..+++.++++|++|+++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~ 73 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV 73 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 899999999998866899999999999998888776532 1 235677777888888779999999999999999
Q ss_pred ceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCC
Q 044658 100 AFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKAD 179 (364)
Q Consensus 100 ~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (364)
++++++.++.|+++++++++++|||+++++ ++|+.++++|+.++.. ++. .+
T Consensus 74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~------~~gi~i~~~Gv~li~~-~~~----------------------~~ 124 (260)
T TIGR00950 74 GEAALLLYLAPLYVTLLSDLMGKERPRKLV------LLAAVLGLAGAVLLLS-DGN----------------------LS 124 (260)
T ss_pred hhhHHHHhhhHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHhhcc-CCc----------------------cc
Confidence 999999999999999999999999999999 9999999999999863 221 12
Q ss_pred CchHHHHHHHHHHHHHHhHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHh
Q 044658 180 DWAIGSIVLIAFTVVWSSWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVV 258 (364)
Q Consensus 180 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 258 (364)
.+..|+.++++++++|+.+.+..|+..++.+ ++.....+++..+.+...+.....+... ..+...|..+++.+++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 200 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP----QALSLQWGALLYLGLI 200 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHHH
Confidence 3468999999999999999999999887654 2344555678888887777766543221 1244677788999999
Q ss_pred hhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhh
Q 044658 259 GSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGL 317 (364)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~ 317 (364)
++.+++.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+.+++.|+
T Consensus 201 ~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 201 GTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999886
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=4e-29 Score=229.95 Aligned_cols=283 Identities=13% Similarity=0.090 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 044658 11 IMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFF 90 (364)
Q Consensus 11 l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 90 (364)
++.++..++-....++.|...++-..|..++++|+.++.+.+.+... ...+++++.+++++.+++..|+++ +++..+.
T Consensus 5 ~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 82 (302)
T TIGR00817 5 LLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLKISSALLKLLLPVAIVH-TIGHVTS 82 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 34555566666667889999984366999999999998877655521 122334457789999999999997 9999999
Q ss_pred HHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccccccccccc
Q 044658 91 LLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVN 170 (364)
Q Consensus 91 ~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~ 170 (364)
+.|++|++++.++++.++.|+++++++++++|||+++++ +.|+.++++|+.+... ++
T Consensus 83 ~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~------~~~l~l~~~Gv~l~~~--~~--------------- 139 (302)
T TIGR00817 83 NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTL------WLSLLPIVGGVALASD--TE--------------- 139 (302)
T ss_pred HHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHhhhcC--Cc---------------
Confidence 999999999999999999999999999999999999999 9999999999987642 11
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhc--cCCCchhHHHHHHHHHHHHHHHHHHHhhcCCC---cccc--
Q 044658 171 TMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGK--KYPCKYSSTAIMALFGAIQSAVLSLIVERNPA---GWAM-- 243 (364)
Q Consensus 171 ~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-- 243 (364)
.+....|++++++++++|+++.+..||..+ +. ++...+.++...+.+.+.|.....+.... .+..
T Consensus 140 -------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~ 211 (302)
T TIGR00817 140 -------LSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAI 211 (302)
T ss_pred -------ccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhh
Confidence 112357999999999999999999999887 54 57889999999999998888776543110 0000
Q ss_pred --cch-hhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhh
Q 044658 244 --KGK-LEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYIL 320 (364)
Q Consensus 244 --~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~ 320 (364)
... ..+...+..+..+....+.++++++++.+++++++..+++|+++++++++++||++++.+++|+++++.|++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~ 291 (302)
T TIGR00817 212 SGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLY 291 (302)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 010 11211223332233333346668999999999999999999999999999999999999999999999999999
Q ss_pred eecCcc
Q 044658 321 LWGKSK 326 (364)
Q Consensus 321 ~~~~~~ 326 (364)
.+.|.+
T Consensus 292 ~~~k~~ 297 (302)
T TIGR00817 292 SRVKAQ 297 (302)
T ss_pred HHHhcc
Confidence 875543
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.96 E-value=1.3e-27 Score=217.50 Aligned_cols=274 Identities=18% Similarity=0.169 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044658 10 IIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWE-RKSRPKLTVPILCQLFFSALTGVTLAQY 88 (364)
Q Consensus 10 ~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (364)
+++.++++++|+..++..|...++ -++. .+++.....+.+.++...+. ++.+++.+++.+...+..++. ...++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVA-NMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHH-HHHHHH
Confidence 567899999999999999977664 4443 47777777777777765431 223333344444444555554 499999
Q ss_pred HHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccccccccc
Q 044658 89 FFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTND 168 (364)
Q Consensus 89 ~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~ 168 (364)
++++|+++.+++.++++.++.|+++.+++++++|||+++++ ++|+.+++.|+.++...+ .
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~------~~g~~~~~~Gv~ll~~~~-~------------- 138 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLA------WLGILIITLGLLVLGLSR-F------------- 138 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHH------HHHHHHHHHHHHHHhccc-c-------------
Confidence 99999999999999999999999999999999999999999 999999999999986321 1
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCch---hHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Q 044658 169 VNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKY---SSTAIMALFGAIQSAVLSLIVERNPAGWAMKG 245 (364)
Q Consensus 169 ~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (364)
...+..|+.++++++++|+.|.+..|+..++.++.. ..+.+......+.........+.. ... ..
T Consensus 139 ---------~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~ 206 (281)
T TIGR03340 139 ---------AQHRRKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PY 206 (281)
T ss_pred ---------cccchhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hh
Confidence 111246888999999999999999887654432111 122222222211111111111111 111 12
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhh
Q 044658 246 KLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYI 319 (364)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l 319 (364)
...++.+++.+.+++.++|.+|++++++.++++++.+.+++|+++.+++++++||++++.+++|++++++|+.+
T Consensus 207 ~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 207 ARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 23456677888888999999999999999999999999999999999999999999999999999999999876
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.96 E-value=3.9e-27 Score=214.62 Aligned_cols=301 Identities=15% Similarity=0.226 Sum_probs=241.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDGGLN-HLVIVAYRQIIATIFLAPVAYFWERK-SRPKLTVPILCQLFFSALTG 82 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 82 (364)
+..+..++.=..+++-..+...+....+++.+ |...+++.+..-.++..++..+++++ ++.+..+++|.++++.+++.
T Consensus 10 ~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~D 89 (334)
T PF06027_consen 10 RFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLD 89 (334)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHH
Confidence 34456666667788888889999988887666 88899998888777777766554432 23333467788888889997
Q ss_pred HHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccc
Q 044658 83 VTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGAT 162 (364)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~ 162 (364)
..++++.+.|++|++.+.++++.++..+++++++++++|+|+++.+ ++|++++++|+.++...+....
T Consensus 90 -v~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~------~~gv~i~i~Gv~lv~~sD~~~~----- 157 (334)
T PF06027_consen 90 -VEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFH------ILGVLICIAGVVLVVVSDVLSG----- 157 (334)
T ss_pred -HHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHH------HHHHHHHHhhhhheeeeccccc-----
Confidence 8999999999999999999999999999999999999999999999 9999999999999986543211
Q ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcC-CCcc
Q 044658 163 NHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERN-PAGW 241 (364)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 241 (364)
..++++.+...|++++++++++||+++++.++..++. +.........+++.++..+.....+.. ....
T Consensus 158 ----------~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~ 226 (334)
T PF06027_consen 158 ----------SDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESI 226 (334)
T ss_pred ----------ccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhcc
Confidence 1112356679999999999999999999999999886 468888999999999988888777652 2222
Q ss_pred cccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhe
Q 044658 242 AMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILL 321 (364)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~ 321 (364)
+ .+...+..++.. .++...-|.+....++..+|+..++-..+..+++++++++++|+++++..++|.++|++|++++.
T Consensus 227 ~-w~~~~~~~~v~~-~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 227 H-WTSQVIGLLVGY-ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred C-CChhhHHHHHHH-HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 2 222333333333 33566777888889999999999999999999999999999999999999999999999999999
Q ss_pred ecCccccch
Q 044658 322 WGKSKEIDE 330 (364)
Q Consensus 322 ~~~~~~~~~ 330 (364)
..+++..++
T Consensus 305 ~~~~~~~~~ 313 (334)
T PF06027_consen 305 LAESPEEEA 313 (334)
T ss_pred ccCCccccc
Confidence 776654433
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=1.9e-26 Score=215.38 Aligned_cols=284 Identities=15% Similarity=0.156 Sum_probs=224.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHHHHH
Q 044658 6 QWKPIIMMVAVNLGLAAANALLKKILDGGLN-HLVIVAYRQIIATIFLAPVAYFWERKSRPKL--TVPILCQLFFSALTG 82 (364)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 82 (364)
+.+..++.+....+-.......|..+++ ++ |..++++|++++.+++..+.... .++.++. .++++..++..|+++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~ 124 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCH 124 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4566667777777778888999999985 99 99999999999988765554322 2222333 346788899999998
Q ss_pred HHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccc
Q 044658 83 VTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGAT 162 (364)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~ 162 (364)
...+...+.|+++++++.++++..+.|+++++++++++|||+++++ +.+++++++|+.+....+ .
T Consensus 125 -~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~------~l~l~l~v~Gv~l~~~~~---~----- 189 (350)
T PTZ00343 125 -LFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYA------YLSLIPIVGGVALASVKE---L----- 189 (350)
T ss_pred -HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHheeccc---c-----
Confidence 5556667899999999999999999999999999999999999999 999999999999987311 1
Q ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCC------CchhHHHHHHHHHHHHHHHHHHHhhc
Q 044658 163 NHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYP------CKYSSTAIMALFGAIQSAVLSLIVER 236 (364)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (364)
+....|++++++++++++++.+..|+..++.+ ++.....+....+.++++|.....+.
T Consensus 190 ----------------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~ 253 (350)
T PTZ00343 190 ----------------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG 253 (350)
T ss_pred ----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11367999999999999999999999887532 24445666688888888888775543
Q ss_pred CC--Ccc----cccchhhHHHHHHHHHhhhHHHHHHHHH----HHhccCcceehcchhhhHHHHHHHHHHHhcCCccchh
Q 044658 237 NP--AGW----AMKGKLEIITIIYSGVVGSGLCYVGMAW----CVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGS 306 (364)
Q Consensus 237 ~~--~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~----a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~ 306 (364)
.. ..+ .......+..+++ .++.+++.+++++. +++++++.+.++..+++|+++++++++++||++++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~ 332 (350)
T PTZ00343 254 KKWVPVWTNYTANMTNYTKGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLG 332 (350)
T ss_pred HHHHHHHHHhhhcccccchHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHh
Confidence 10 001 0001112223344 34567888888885 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhheec
Q 044658 307 VVGSIIVVIGLYILLWG 323 (364)
Q Consensus 307 ~~G~~li~~g~~l~~~~ 323 (364)
++|++++++|++++++.
T Consensus 333 ~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 333 YLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998764
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.94 E-value=1.7e-25 Score=201.03 Aligned_cols=248 Identities=12% Similarity=0.091 Sum_probs=184.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCCCHHH-HHHHHHHHHH
Q 044658 8 KPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERK-----SRPKLTVPI-LCQLFFSALT 81 (364)
Q Consensus 8 ~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~~-~~~~~~~g~~ 81 (364)
+|++++++++++||.++++.|. .+ +++|.+++++|++++.+++.++...++++ +.++.++++ +......|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 5889999999999999999998 45 49999999999999998887765433221 111122333 4456677777
Q ss_pred HHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccc
Q 044658 82 GVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGA 161 (364)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~ 161 (364)
. .+++.++++|++++++++++++.++.|+++++++++++|||+++++ ++++.++++|+.++...++
T Consensus 80 ~-~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~------~l~~~~~~~Gv~li~~~~~------- 145 (256)
T TIGR00688 80 I-GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQ------FIAVIIATLGVISNIVLKG------- 145 (256)
T ss_pred H-HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHHHHHHHHHHcC-------
Confidence 5 8999999999999999999999999999999999999999999999 9999999999998863111
Q ss_pred cccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 044658 162 TNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGW 241 (364)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (364)
+. ..+++.++++|+.|.+..|+..++ + ....... .........+.....+.. ...
T Consensus 146 ----------------~~-----~~~~l~aa~~~a~~~i~~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~ 200 (256)
T TIGR00688 146 ----------------SL-----PWEALVLAFSFTAYGLIRKALKNT-D-LAGFCLE-TLSLMPVAIYYLLQTDFA-TVQ 200 (256)
T ss_pred ----------------Cc-----hHHHHHHHHHHHHHHHHHhhcCCC-C-cchHHHH-HHHHHHHHHHHHHHhccC-ccc
Confidence 00 135788999999999999997653 2 2222211 111111211111111111 101
Q ss_pred cccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHH
Q 044658 242 AMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFI 297 (364)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~ 297 (364)
.......|..+++.|++ +.++|.++++++|+.++++++++.+++|+++.+++.+.
T Consensus 201 ~~~~~~~~~~l~~~g~~-t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 201 QTNPFPIWLLLVLAGLI-TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred ccCchhHHHHHHHHHHH-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 11122478888888875 88999999999999999999999999999999999764
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.93 E-value=2.7e-23 Score=189.90 Aligned_cols=284 Identities=21% Similarity=0.330 Sum_probs=218.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHH
Q 044658 4 CRQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGV 83 (364)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (364)
++...+....++..+.|+......|...++..++....+.|...+.+...+... +++.... ...+.+.+....+.+..
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (292)
T COG0697 3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-LEPRGLR-PALRPWLLLLLLALLGL 80 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhccccc-ccccchHHHHHHHHHHH
Confidence 456677888888999999999999999874366777777799988887443332 1111111 11222444555666666
Q ss_pred HHHHHHHHHhccccCcceeehcccchhHHHHHHhh-hhccccccccccccccchhHHHHHHhhhhhheeccCCccccccc
Q 044658 84 TLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLAL-PFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGAT 162 (364)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~-~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~ 162 (364)
..++.+++.++++++++.++++.++.|+++.++++ ++++||+++++ +.++.+++.|+.++...++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~------~~~~~~~~~Gv~lv~~~~~~~~----- 149 (292)
T COG0697 81 ALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQ------ILGILLALAGVLLILLGGGGGG----- 149 (292)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH------HHHHHHHHHhHHheecCCCcch-----
Confidence 99999999999999999999999999999999997 77799999999 9999999999999984322110
Q ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHH-HHHHHHHHHHHHHHHHhhcCCCcc
Q 044658 163 NHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTA-IMALFGAIQSAVLSLIVERNPAGW 241 (364)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 241 (364)
.+ ...|+++++.++++++++.+..|+.. +. ++..... +.+. ............ ...
T Consensus 150 ---------------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~-~~~-- 206 (292)
T COG0697 150 ---------------IL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLFFLS-GFG-- 206 (292)
T ss_pred ---------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHHHhc-ccc--
Confidence 01 46899999999999999999999887 43 3444444 3333 111111111111 111
Q ss_pred cccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhe
Q 044658 242 AMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILL 321 (364)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~ 321 (364)
.......|..+.+.+++++++++.++.+++++.+++.++.+.+++|+++.++++++++|+++..+++|+.+++.|+.+..
T Consensus 207 ~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 207 APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 22334678888999999888999999999999999999999999999999999999999999999999999999999988
Q ss_pred ec
Q 044658 322 WG 323 (364)
Q Consensus 322 ~~ 323 (364)
..
T Consensus 287 ~~ 288 (292)
T COG0697 287 LR 288 (292)
T ss_pred cc
Confidence 76
No 14
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.93 E-value=9.5e-24 Score=183.27 Aligned_cols=282 Identities=14% Similarity=0.126 Sum_probs=230.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC-C--CCCHHHHHHHHH
Q 044658 1 MDCCRQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSR-P--KLTVPILCQLFF 77 (364)
Q Consensus 1 m~~~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~-~--~~~~~~~~~~~~ 77 (364)
|+ ++..+|+++.+.+.++||..+.+.|.. + ..++.++...|.+.+..+++.+....++.+. . ..++|.+....+
T Consensus 1 ~~-~~~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l 77 (293)
T COG2962 1 MA-KDSRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLAL 77 (293)
T ss_pred CC-CcccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHH
Confidence 55 678899999999999999999999955 4 4999999999999999888877655433221 1 124566666777
Q ss_pred HHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcc
Q 044658 78 SALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPF 157 (364)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~ 157 (364)
.+++ +..++..|.+|.+...+-+++.-++..|++.++++++++|||+++.| ++++.++.+||....+..|+..
T Consensus 78 ~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q------~iAV~lA~~GV~~~~~~~g~lp 150 (293)
T COG2962 78 TALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQ------WIAVGLAAAGVLIQTWLLGSLP 150 (293)
T ss_pred HHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHcCCCc
Confidence 7777 59999999999999999999999999999999999999999999999 9999999999999987444321
Q ss_pred cccccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 044658 158 YLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERN 237 (364)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (364)
..++.-++.|+.|....|+..- ++.+-.......-....+.+.+..+..
T Consensus 151 ----------------------------wval~la~sf~~Ygl~RK~~~v---~a~~g~~lE~l~l~p~al~yl~~l~~~ 199 (293)
T COG2962 151 ----------------------------WVALALALSFGLYGLLRKKLKV---DALTGLTLETLLLLPVALIYLLFLADS 199 (293)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHhcCC---chHHhHHHHHHHHhHHHHHHHHHHhcC
Confidence 2456678899999997666532 356666677777777666666666543
Q ss_pred CCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhh
Q 044658 238 PAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGL 317 (364)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~ 317 (364)
.+.....+...+..++..|. .|.++..+|..+-|+++-+..+.++|++|..-.+++++++||+++..+++..++|..|+
T Consensus 200 ~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL 278 (293)
T COG2962 200 GQFLQQNANSLWLLLVLAGL-VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLAL 278 (293)
T ss_pred chhhhcCCchHHHHHHHhhH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 32122234466777777776 58999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheecC
Q 044658 318 YILLWGK 324 (364)
Q Consensus 318 ~l~~~~~ 324 (364)
.++....
T Consensus 279 ~l~~~d~ 285 (293)
T COG2962 279 ALFSIDG 285 (293)
T ss_pred HHHHHHH
Confidence 9987643
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.92 E-value=1.5e-22 Score=171.15 Aligned_cols=274 Identities=15% Similarity=0.139 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044658 9 PIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQY 88 (364)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (364)
.++.++.+.+.-=....+.|..+.. ++|...+.+|..++.+++++++ |+.+.+.+++++..+...|+.. ...|.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~----RPwr~r~~~~~~~~~~~yGvsL-g~MNl 86 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF----RPWRRRLSKPQRLALLAYGVSL-GGMNL 86 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh----hHHHhccChhhhHHHHHHHHHH-HHHHH
Confidence 4667777777777778889999995 9999999999999999998876 3333467889999999999996 99999
Q ss_pred HHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccccccccc
Q 044658 89 FFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTND 168 (364)
Q Consensus 89 ~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~ 168 (364)
+||.+++.+|.+.+..+.++.|+.+++++- | +.++ .+.+.+++.|+.++.-.+.+.
T Consensus 87 ~FY~si~riPlGiAVAiEF~GPL~vA~~~s---R---r~~d------~vwvaLAvlGi~lL~p~~~~~------------ 142 (292)
T COG5006 87 LFYLSIERIPLGIAVAIEFTGPLAVALLSS---R---RLRD------FVWVALAVLGIWLLLPLGQSV------------ 142 (292)
T ss_pred HHHHHHHhccchhhhhhhhccHHHHHHHhc---c---chhh------HHHHHHHHHHHHhheeccCCc------------
Confidence 999999999999999999999999887653 2 2345 777888999999987322111
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhh
Q 044658 169 VNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLE 248 (364)
Q Consensus 169 ~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (364)
...+..|..+++.++.||+.|.+..+|..+.. +.-.-+...+.+++++..|+...... ....++..
T Consensus 143 ---------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag----~~l~~p~l 208 (292)
T COG5006 143 ---------WSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAG----PALFSPSL 208 (292)
T ss_pred ---------CcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcc----hhhcChHH
Confidence 34468899999999999999999999998653 45678888999999999998875432 22234456
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCcc
Q 044658 249 IITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSK 326 (364)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~ 326 (364)
...-+.++++++.+.|.+-..++++.+....+.+..+||.++.+.|++++||++|+.||+|+.+|+.+..-..+..+|
T Consensus 209 l~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 209 LPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 666788999999999999999999999999999999999999999999999999999999999999887655554333
No 16
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.88 E-value=9.2e-24 Score=179.53 Aligned_cols=290 Identities=14% Similarity=0.152 Sum_probs=216.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVT 84 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (364)
+..+|.++..++.++... .+..+..++ .+|....--|++.-++.-.|..++.+..-..+. ....++++.|+.+ +
T Consensus 35 ~p~~gl~l~~vs~ff~~~-~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~--g~R~~LiLRg~mG-~ 108 (346)
T KOG4510|consen 35 KPNLGLLLLTVSYFFNSC-MVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPE--GKRKWLILRGFMG-F 108 (346)
T ss_pred CCccCceehhhHHHHhhH-HHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCC--CcEEEEEeehhhh-h
Confidence 456677888888444444 444444544 899999999988777776665544333221122 2233456788887 8
Q ss_pred HHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccccc
Q 044658 85 LAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNH 164 (364)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~ 164 (364)
-+....|||++|.+.++++++..+.|+++.+++|.++||+.++.+ .++..+.+.||+++. .+.+-+.
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~e------aL~s~itl~GVVLIv---RPpFlFG---- 175 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFE------ALGSLITLLGVVLIV---RPPFLFG---- 175 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHH------HHHHHHhhheEEEEe---cCCcccC----
Confidence 888889999999999999999999999999999999999999999 999999999999998 3333221
Q ss_pred ccccccccCCCC-CCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccc
Q 044658 165 MTNDVNTMNSSK-KADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAM 243 (364)
Q Consensus 165 ~~~~~~~~~~~~-~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (364)
+.+.++++ ..+.+..|...++.+.++-|.-.++.|++.++.+ ......+..+.+.+.........+. -.++.
T Consensus 176 ----~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~ig~--~~lP~ 248 (346)
T KOG4510|consen 176 ----DTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASIGA--VQLPH 248 (346)
T ss_pred ----CCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhccc--eecCc
Confidence 11111111 2355678889999999999999999999988864 3444445555555554443333221 12222
Q ss_pred cchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 244 KGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
..++|+..+.+|++ +++++.+...++|+..+..+++..+.+.+++++++.+++||.|+++.|.|+++++.+.+....
T Consensus 249 -cgkdr~l~~~lGvf-gfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~ 325 (346)
T KOG4510|consen 249 -CGKDRWLFVNLGVF-GFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVAL 325 (346)
T ss_pred -cccceEEEEEehhh-hhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHH
Confidence 24677778888875 679999999999999999999999999999999999999999999999999999988776654
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.88 E-value=9.5e-21 Score=172.60 Aligned_cols=278 Identities=17% Similarity=0.115 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044658 9 PIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQY 88 (364)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (364)
++++.++++++||+..+..|... +.++.++. |..++.+++..+....+.++ +..++.+..-+..|++ ...++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~~~--~~~~~~~~~g~l~G~~-w~ig~~ 74 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVLPE--FWALSIFLVGLLSGAF-WALGQI 74 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhCCc--ccccHHHHHHHHHHHH-HHhhhh
Confidence 57889999999999999999865 57777765 77778777766655433211 2234555556666666 489999
Q ss_pred HHHHhccccCcceeehccc-chhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccc
Q 044658 89 FFLLGFEYTTAAFSCAFIN-IVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTN 167 (364)
Q Consensus 89 ~~~~al~~~~~~~~~~l~~-~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~ 167 (364)
+++.++++++.+.+..+.+ +.+++..+.+.+++||+.++++ -...++|++++++|+.++...+++..+
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~--~~~~~~g~~l~l~G~~l~~~~~~~~~~--------- 143 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQ--TLLGLLALILIIIGVYLTSRSKDKSAG--------- 143 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHhHheEEeccccccc---------
Confidence 9999999999999999988 9999999999999999987653 111167799999998888643211110
Q ss_pred cccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHH---HHHHHHHHHHHHhhcCCCccccc
Q 044658 168 DVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMAL---FGAIQSAVLSLIVERNPAGWAMK 244 (364)
Q Consensus 168 ~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 244 (364)
.++..+..+|++++++++++|+.|.+..|+.. . +|.+..+.+.. .++++..... ... ..+ .
T Consensus 144 -------~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~~--~-~~~~~~~~~~~g~~~~~~~~~~~~---~~~-~~~--~ 207 (290)
T TIGR00776 144 -------IKSEFNFKKGILLLLMSTIGYLVYVVVAKAFG--V-DGLSVLLPQAIGMVIGGIIFNLGH---ILA-KPL--K 207 (290)
T ss_pred -------cccccchhhHHHHHHHHHHHHHHHHHHHHHcC--C-CcceehhHHHHHHHHHHHHHHHHH---hcc-cch--H
Confidence 00002346799999999999999999999763 3 46666444433 3333222221 111 111 2
Q ss_pred chhhHHHHHHHHHhhhHHHHHHHHHHHh-ccCcceehcchhhhHHHHHHHHHHHhcCCccchhh----HHHHHHHHhhhh
Q 044658 245 GKLEIITIIYSGVVGSGLCYVGMAWCVE-QRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSV----VGSIIVVIGLYI 319 (364)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~a~~-~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~----~G~~li~~g~~l 319 (364)
+...|. .+..|++ ..+++.+|..+.+ +.+++.++++.+++|+.+.+++++++||+.++.++ +|+++++.|+.+
T Consensus 208 ~~~~~~-~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l 285 (290)
T TIGR00776 208 KYAILL-NILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANI 285 (290)
T ss_pred HHHHHH-HHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHH
Confidence 223343 4448877 7999999999999 99999999999999999999999999999999999 999999999988
Q ss_pred hee
Q 044658 320 LLW 322 (364)
Q Consensus 320 ~~~ 322 (364)
...
T Consensus 286 ~~~ 288 (290)
T TIGR00776 286 LGI 288 (290)
T ss_pred Hhc
Confidence 754
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.85 E-value=5.3e-19 Score=162.53 Aligned_cols=266 Identities=14% Similarity=0.170 Sum_probs=212.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHH
Q 044658 37 HLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLL 116 (364)
Q Consensus 37 p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll 116 (364)
|..+++..+....++..+.....+ .++.++..+..++..+++. .++..+.+.|++|++.+...++.+..|+.++++
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~ 107 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLFK---FPKSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVMIL 107 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcc---ccCCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHH
Confidence 889999999988887776654333 2233455566677788886 999999999999999999999999999999999
Q ss_pred hhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 044658 117 ALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWS 196 (364)
Q Consensus 117 ~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a 196 (364)
+++++|+|.++.+ +.++++..+|+.+....+...... .+....+...|+++.+++.++.+
T Consensus 108 ~~l~~~k~y~~~~------~~~v~li~~Gv~~~~~~~~~~~~~--------------~~~~~~~~~~G~~ll~~sl~~~a 167 (303)
T PF08449_consen 108 GVLILGKRYSRRQ------YLSVLLITIGVAIFTLSDSSSSSS--------------SNSSSFSSALGIILLLLSLLLDA 167 (303)
T ss_pred HHHhcCccccHHH------HHHHHHHHhhHheeeecccccccc--------------cccccccchhHHHHHHHHHHHHH
Confidence 9999999999999 999999999999998754332211 11112222349999999999999
Q ss_pred hHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHH--hhcCCC--cccccchhhHHHHHHHHHhhhHHHHHHHHHHH
Q 044658 197 SWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLI--VERNPA--GWAMKGKLEIITIIYSGVVGSGLCYVGMAWCV 271 (364)
Q Consensus 197 ~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 271 (364)
...+.+++..++++ ++...+++...++.+...+.... .+...+ .+....+..+..++...+ +..+++.+.+...
T Consensus 168 ~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~-~~~~g~~~i~~~~ 246 (303)
T PF08449_consen 168 FTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL-TGALGQFFIFYLI 246 (303)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 99999999987765 67889999999999888877776 322111 111223344455555554 6778888888999
Q ss_pred hccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCccc
Q 044658 272 EQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSKE 327 (364)
Q Consensus 272 ~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 327 (364)
++.++...+++..++.+++++++++++++++++.+|+|+++++.|..++...++|+
T Consensus 247 ~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 247 KKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999998876654
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.84 E-value=1.6e-19 Score=161.00 Aligned_cols=299 Identities=15% Similarity=0.191 Sum_probs=232.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHH----HH---hhhcCC-----------
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDGGL--NHLVIVAYRQIIATIFLAPVA----YF---WERKSR----------- 64 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~--~p~~~~~~r~~~~~l~l~~~~----~~---~~~~~~----------- 64 (364)
|...|+.++++..++|=.+.-+.+..++++. .|+..++.....-.+.+.++. .+ .+|.+.
T Consensus 11 r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~d~ 90 (416)
T KOG2765|consen 11 RWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEADA 90 (416)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhhhh
Confidence 3567999999999999999999999999643 499888877655555555433 11 111000
Q ss_pred ---------------------------C---------------------CCCHH------------HHHH-HHHHHHHHH
Q 044658 65 ---------------------------P---------------------KLTVP------------ILCQ-LFFSALTGV 83 (364)
Q Consensus 65 ---------------------------~---------------------~~~~~------------~~~~-~~~~g~~~~ 83 (364)
+ +.+.| +..+ .+....+ .
T Consensus 91 e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~l-W 169 (416)
T KOG2765|consen 91 EGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPL-W 169 (416)
T ss_pred hccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHH-H
Confidence 0 00011 3333 3344445 4
Q ss_pred HHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccc
Q 044658 84 TLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATN 163 (364)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~ 163 (364)
+++++.++.|+.+++++..+++.++..+|+..++.++..||++..+ ++++++++.|++++...+....
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sK------llav~~si~GViiVt~~~s~~~------ 237 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSK------LLAVFVSIAGVIIVTMGDSKQN------ 237 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHH------HHHHHHhhccEEEEEecccccc------
Confidence 8999999999999999999999999999999999999999999999 9999999999999986433211
Q ss_pred cccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCC---CchhHHHHHHHHHHHHHHHHHHHhhc-CCC
Q 044658 164 HMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYP---CKYSSTAIMALFGAIQSAVLSLIVER-NPA 239 (364)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 239 (364)
.+........|+++++++++.||+|.++.||-..+.+ |.-....+..++..+++.|..++.+. ..+
T Consensus 238 ----------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e 307 (416)
T KOG2765|consen 238 ----------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEE 307 (416)
T ss_pred ----------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccC
Confidence 1122445689999999999999999999998877653 33334455666666777766665544 334
Q ss_pred cccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhh
Q 044658 240 GWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYI 319 (364)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l 319 (364)
.++.++..+...+++.+.++++++-++|.+|+-..++..++..+.++...+++.+.++-|.++++.+++|.+.|++|.+.
T Consensus 308 ~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~ 387 (416)
T KOG2765|consen 308 RFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVI 387 (416)
T ss_pred cccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhh
Confidence 55666666777888889999999999999999999999999999999999999999888999999999999999999999
Q ss_pred heecCcc
Q 044658 320 LLWGKSK 326 (364)
Q Consensus 320 ~~~~~~~ 326 (364)
.+.....
T Consensus 388 vn~~~~~ 394 (416)
T KOG2765|consen 388 VNISSEN 394 (416)
T ss_pred eeccccc
Confidence 9875443
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.78 E-value=6.8e-19 Score=158.67 Aligned_cols=281 Identities=14% Similarity=0.076 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044658 16 VNLGLAAANALLKKILDG-GLN-HLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLG 93 (364)
Q Consensus 16 ~~~~~~~~~~~~k~~~~~-~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 93 (364)
..++--......|..++. +.+ |..++.++...+.+.++....+...+..+..++..+..++..|++. +++..+-+.+
T Consensus 25 w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~S 103 (316)
T KOG1441|consen 25 WYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVS 103 (316)
T ss_pred HhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHH-HHHHHhcchh
Confidence 333334455677888873 244 9999999888888877776654444433333567788889999997 9999999999
Q ss_pred ccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccC
Q 044658 94 FEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMN 173 (364)
Q Consensus 94 l~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~ 173 (364)
+++.+++..+++..+.|+++.++++++.+|+.+... +..+.....||.+.+..+.
T Consensus 104 l~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~------~lsL~piv~GV~ias~~e~------------------- 158 (316)
T KOG1441|consen 104 LSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMT------YLSLLPIVFGVAIASVTEL------------------- 158 (316)
T ss_pred hhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceE------EEEEEEeeeeEEEeeeccc-------------------
Confidence 999999999999999999999999999999999999 9999999999999986332
Q ss_pred CCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhc--cCC-CchhHHHHHHHHHHHHHH-HHHHHhhcCCC---cccccch
Q 044658 174 SSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGK--KYP-CKYSSTAIMALFGAIQSA-VLSLIVERNPA---GWAMKGK 246 (364)
Q Consensus 174 ~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~--~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~ 246 (364)
+-+..|.+.++.+.+..+..+++.++..+ +.+ |+..+..++.-.+.+.++ |.....+.+.. .....+
T Consensus 159 -----~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~- 232 (316)
T KOG1441|consen 159 -----SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWF- 232 (316)
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccc-
Confidence 22478999999999999999999999984 322 789999999999999888 66665554322 111111
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCcc
Q 044658 247 LEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSK 326 (364)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~ 326 (364)
.....+.+.. ++...-+...+..+.+++|.+.++.....-++.++.++++++++.++.+..|+++.++|+++|.+.|.+
T Consensus 233 ~~~~~~~~~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~ 311 (316)
T KOG1441|consen 233 VTFLILLLNS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLK 311 (316)
T ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence 1223333333 445566677788999999999999999999999999999999999999999999999999999987766
Q ss_pred ccc
Q 044658 327 EID 329 (364)
Q Consensus 327 ~~~ 329 (364)
+++
T Consensus 312 ~~~ 314 (316)
T KOG1441|consen 312 EKK 314 (316)
T ss_pred hhc
Confidence 543
No 21
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.74 E-value=8.2e-17 Score=134.87 Aligned_cols=264 Identities=14% Similarity=0.105 Sum_probs=209.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHH
Q 044658 37 HLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLL 116 (364)
Q Consensus 37 p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll 116 (364)
...++|.++++..++.=++..++++ .+.+......+..+++-. .+++...+.|++|+|-....+-.+.-|+=++++
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~---~~~D~t~~~~YaAcs~sY-LlAMVssN~Alq~vpYPTqVlgKScKPIPVMil 128 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKK---TEIDNTPTKMYAACSASY-LLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL 128 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeeccc---ccccCCcchHHHHHHHHH-HHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence 5677788888877776555433322 123333333445566654 889999999999999999999999999999999
Q ss_pred hhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCCCchHHHHHHHHHHHHHH
Q 044658 117 ALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWS 196 (364)
Q Consensus 117 ~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a 196 (364)
++++.+++.++++ ..+++.++.||++....++...+. ...+...|.++.+++-..-+
T Consensus 129 GVl~~~KsY~w~k------Y~cVL~IV~GValFmYK~~Kv~g~-----------------e~~t~g~GElLL~lSL~mDG 185 (337)
T KOG1580|consen 129 GVLFAHKSYHWRK------YCCVLMIVVGVALFMYKENKVGGA-----------------EDKTFGFGELLLILSLAMDG 185 (337)
T ss_pred ehhhhcccccHHH------HHHHHHHHHHHHHhhccccccCCC-----------------cccccchHHHHHHHHHHhcc
Confidence 9999999999999 999999999999998654543322 34556789999999999999
Q ss_pred hHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhhcCCC--cccccchhhHHHHHHHHHhhhHHHHHHHHHHHhc
Q 044658 197 SWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVERNPA--GWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQ 273 (364)
Q Consensus 197 ~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 273 (364)
+....+.+..+.+. ....++++..+++.+.+..-.++.+..++ .+....+..|+.+..+++ ++.+++.+.+..+..
T Consensus 186 lTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fIF~tv~~ 264 (337)
T KOG1580|consen 186 LTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFIFKTVEE 264 (337)
T ss_pred cchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHHHHHHHH
Confidence 99998888776543 34678889999999888877666554222 233445677888888886 788999999999999
Q ss_pred cCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCcccc
Q 044658 274 RGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSKEI 328 (364)
Q Consensus 274 ~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 328 (364)
.+|...+++....-.++++.++++++.+++..||+|..+++.++.+-....++.+
T Consensus 265 FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a~ 319 (337)
T KOG1580|consen 265 FGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKAP 319 (337)
T ss_pred hCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcCc
Confidence 9999999999999999999999999999999999999999999887665544443
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.71 E-value=1.4e-16 Score=121.09 Aligned_cols=134 Identities=20% Similarity=0.233 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHHHHHHHHH
Q 044658 9 PIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSR-PKLTVPILCQLFFSALTGVTLAQ 87 (364)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~ 87 (364)
..++.++++++||...++.|..++ ++||...+++|..+...++..+.....+.+. ...++|.|.++.+.|+.+ .+++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~-glsw 81 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAG-GLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHH-HHHH
Confidence 467899999999999999999999 6999999999999999988888766544322 235789999999999887 9999
Q ss_pred HHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhe
Q 044658 88 YFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLT 150 (364)
Q Consensus 88 ~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~ 150 (364)
.+||+|++...++.+.++..+.|+++++++++++|||+|..+ |+|+.++.+|+.++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~------~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPT------WIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHH------HHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999 999999999999876
No 23
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1.4e-13 Score=123.52 Aligned_cols=298 Identities=13% Similarity=0.097 Sum_probs=216.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhhc----CCCCC------CHHHHHH
Q 044658 8 KPIIMMVAVNLGLAAANALLKKILDGG---LNHLVIVAYRQIIATIFLAPVAYFWERK----SRPKL------TVPILCQ 74 (364)
Q Consensus 8 ~~~l~~~l~~~~~~~~~~~~k~~~~~~---~~p~~~~~~r~~~~~l~l~~~~~~~~~~----~~~~~------~~~~~~~ 74 (364)
...+.++...+.++......|+.-..+ +.|....++--++-.++.....+...++ ..... .+++..+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 456678888899999999999887655 5688888887777777766666544211 11111 3567778
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccC
Q 044658 75 LFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKG 154 (364)
Q Consensus 75 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~ 154 (364)
+.+.+++. ++.+.+++.++.+.+++..++.+++-.+.|+++.++++++|+++.| |.++.+.++|+.++-....
T Consensus 95 ~~vPa~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Q------w~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 95 VSVPALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQ------WMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HHHHHHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHH------HHHHHHHHHHHHHHhccCC
Confidence 88888897 8888999999999999999999999999999999999999999999 9999999999999973222
Q ss_pred CcccccccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHH-HHHHHHHHHHHH
Q 044658 155 KPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMAL-FGAIQSAVLSLI 233 (364)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 233 (364)
+..+ +. .....++...|....+.+++..+...++.++..++.+.+..+.-.++. ++.+..+...+.
T Consensus 168 ~~~~------------a~-~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~ 234 (345)
T KOG2234|consen 168 SPTG------------AK-SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILL 234 (345)
T ss_pred CCCC------------cc-CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 1110 00 022356778999999999999999999999999875544444444433 333333333333
Q ss_pred hhcCCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHH
Q 044658 234 VERNPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIV 313 (364)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li 313 (364)
.+.....+. .-...|-...+..++..+.+=.+....+|+.+-..=.....+..+++.+.++.+++.+++....+|+.++
T Consensus 235 ~d~~~i~~~-gff~G~s~~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lV 313 (345)
T KOG2234|consen 235 QDGEAINEY-GFFYGYSSIVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLV 313 (345)
T ss_pred ccccccccC-CccccccHHHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 322211111 0112222333333444555556667778888888888888899999999999999999999999999999
Q ss_pred HHhhhhheecCcc
Q 044658 314 VIGLYILLWGKSK 326 (364)
Q Consensus 314 ~~g~~l~~~~~~~ 326 (364)
+.++.++...+.+
T Consensus 314 i~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 314 ILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHhhcCCcc
Confidence 9999999954433
No 24
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.65 E-value=6.5e-17 Score=137.12 Aligned_cols=285 Identities=13% Similarity=0.141 Sum_probs=213.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDGGLN-HLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGV 83 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (364)
+...++.+.=.-.++-...........+++++ |...+|+.+..-+++..++..+|+ + .-+..|..+++.++..
T Consensus 15 k~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~---~~~~~~~hYilla~~D- 88 (336)
T KOG2766|consen 15 KTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR--K---YIKAKWRHYILLAFVD- 88 (336)
T ss_pred hhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh--H---HHHHHHHHhhheeEEe-
Confidence 44455555544455555555666666665555 999999999999999998887654 2 2234455577888887
Q ss_pred HHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccc
Q 044658 84 TLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATN 163 (364)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~ 163 (364)
.-++++...|.||++...++.+-......+.+++|++++.|.++.+ +.|+.+|+.|++++...+-...
T Consensus 89 VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmk------i~gV~iCi~GvvmvV~sDV~ag------ 156 (336)
T KOG2766|consen 89 VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMK------ISGVVICIVGVVMVVFSDVHAG------ 156 (336)
T ss_pred ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhhe------eeeEEeEecceEEEEEeeeccc------
Confidence 7888888999999999999999998888999999999999999999 9999999999999986432211
Q ss_pred cccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhc-CCCccc
Q 044658 164 HMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVER-NPAGWA 242 (364)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 242 (364)
....+.+..+|+.+.++++-+||+.++..+.+.++. +...++....++++++...- +..+. ......
T Consensus 157 ----------d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~ 224 (336)
T KOG2766|consen 157 ----------DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHHVSTLH 224 (336)
T ss_pred ----------cccCCCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-HhhhccceeeEe
Confidence 111245668899999999999999999999999886 47889999999999998877 44333 211111
Q ss_pred ccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 243 MKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
+.......+- ..++.+.-|.+.-..+|..+++..++-....-.++++. ..||-+.+|..++....+..|.+++..
T Consensus 225 --w~~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 225 --WDSAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred --ehHHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 1112222222 33344455555566688888888888888888888888 468888999999999999999999854
Q ss_pred cC
Q 044658 323 GK 324 (364)
Q Consensus 323 ~~ 324 (364)
++
T Consensus 300 re 301 (336)
T KOG2766|consen 300 RE 301 (336)
T ss_pred cc
Confidence 33
No 25
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.63 E-value=1.9e-14 Score=127.17 Aligned_cols=231 Identities=10% Similarity=0.074 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhh
Q 044658 68 TVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGAL 147 (364)
Q Consensus 68 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~ 147 (364)
++|+..++.+.+++. .+.+.+.+.++++++++..+++.++..+++++++++++|+|++.+| |+++.+.++|+.
T Consensus 13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~q------W~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQ------WLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhh------HHHHHHHHHHHh
Confidence 468888899999997 9999999999999999999999999999999999999999999999 999999999999
Q ss_pred hheeccCCcccccccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCC-chhHHHHHHHHHHHH
Q 044658 148 TLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPC-KYSSTAIMALFGAIQ 226 (364)
Q Consensus 148 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~ 226 (364)
++...+...... .++.....+....+...|.++.++++++.++..++.++..|+.+. .........+.+.+.
T Consensus 86 lv~~~~~~~~~~-------~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~ 158 (244)
T PF04142_consen 86 LVQLSSSQSSDN-------SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILF 158 (244)
T ss_pred eeecCCcccccc-------ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Confidence 987532221100 000000011234556899999999999999999999999988653 333344445555555
Q ss_pred HHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchh
Q 044658 227 SAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGS 306 (364)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~ 306 (364)
.++.....+... .........|-...+..++...++=.+....+|+.+...=+....+..+++.++++++++.+++...
T Consensus 159 ~~~~~~~~~~~~-~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f 237 (244)
T PF04142_consen 159 NLLALLLSDGSA-ISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSF 237 (244)
T ss_pred HHHHHhcccccc-cccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH
Confidence 544433332210 0000011112222233334455566667778999999999999999999999999999999999999
Q ss_pred hHHHHHH
Q 044658 307 VVGSIIV 313 (364)
Q Consensus 307 ~~G~~li 313 (364)
.+|+.++
T Consensus 238 ~lg~~~V 244 (244)
T PF04142_consen 238 LLGAALV 244 (244)
T ss_pred hhheecC
Confidence 9998653
No 26
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.61 E-value=2.2e-14 Score=109.15 Aligned_cols=136 Identities=13% Similarity=0.116 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHH
Q 044658 184 GSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLC 263 (364)
Q Consensus 184 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (364)
..++++++++++++..++.|--.++. ||...+..+.++..+.+.......++ .+.....+++.|..++..|+ .++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~-~~~~~~~~~k~~lflilSGl-a~gls 80 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGN-WQAGGEIGPKSWLFLILSGL-AGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCc-eecccccCcceehhhhHHHH-HHHHH
Confidence 56899999999999999999988876 57888999999988887777666553 22222345678888888884 79999
Q ss_pred HHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 264 YVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 264 ~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
+.+|+++++..+++++.++..+.|+++++++++++||+++..+++|+.+|.+|.++...
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999999999999999999999999999999999999887653
No 27
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.60 E-value=3.7e-14 Score=123.81 Aligned_cols=265 Identities=14% Similarity=0.152 Sum_probs=212.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHH
Q 044658 36 NHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFL 115 (364)
Q Consensus 36 ~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~l 115 (364)
+|..+.+.+-+.+.++-...... ++.. ...++.|..+...++.+ .++..+.+.|++|++-....+-.+.--+-+++
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~--~k~~-~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPVml 125 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKW--WKKE-LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPVML 125 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhc--cccc-CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHHHH
Confidence 47888888888877766444432 2222 23456677778888887 99999999999999999888888888888889
Q ss_pred HhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCCCchHHHHHHHHHHHHH
Q 044658 116 LALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVW 195 (364)
Q Consensus 116 l~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~ 195 (364)
.+.++.|.|.+..+ .+...+.-.|+-+....+.+.. .....+.+..+|+.+....-++-
T Consensus 126 mg~Lvy~~ky~~~e------Yl~~~LIs~GvsiF~l~~~s~s---------------~~~~g~~ns~~G~~Ll~~~L~fD 184 (327)
T KOG1581|consen 126 MGTLVYGRKYSSFE------YLVAFLISLGVSIFSLFPNSDS---------------SSKSGRENSPIGILLLFGYLLFD 184 (327)
T ss_pred HHHHHhcCccCcHH------HHHHHHHHhheeeEEEecCCCC---------------ccccCCCCchHhHHHHHHHHHHH
Confidence 99999999999999 9999999999999987644321 11123456789999999999999
Q ss_pred HhHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhhcCC--CcccccchhhHHHHHHHHHhhhHHHHHHHHHHHh
Q 044658 196 SSWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVERNP--AGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVE 272 (364)
Q Consensus 196 a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 272 (364)
+..+..+.++.++.. ++..+++...++..+......+..+... -.+-..++..++-++.... +..+++.+.++-++
T Consensus 185 gfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~-~gavGQ~FI~~TI~ 263 (327)
T KOG1581|consen 185 GFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST-CGAVGQLFIFYTIE 263 (327)
T ss_pred hhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH-hhhhhhheehhhHh
Confidence 999999999988755 6788999999999988887744433311 1222334566777777776 57899999999999
Q ss_pred ccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCcc
Q 044658 273 QRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSK 326 (364)
Q Consensus 273 ~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~ 326 (364)
+.++...+.++.++-.++++++.+.+|++.++.||+|..+++.|+.+-...+.+
T Consensus 264 ~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 264 RFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999887655444
No 28
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.57 E-value=1.2e-12 Score=114.28 Aligned_cols=255 Identities=16% Similarity=0.174 Sum_probs=193.4
Q ss_pred CCC-hHHHHHHHHHHHHHHHHHHHHHhhhcC---CCCCCHHHHH-HHHHHHHHHHHHHHHHHHHhccccCcceeehcccc
Q 044658 34 GLN-HLVIVAYRQIIATIFLAPVAYFWERKS---RPKLTVPILC-QLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINI 108 (364)
Q Consensus 34 ~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~ 108 (364)
+++ |..++.++.++-.++........+++. +...+|++.. ++...++.+ ++...+.+++++|++.+..++..+.
T Consensus 41 ~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSS 119 (349)
T KOG1443|consen 41 NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSS 119 (349)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeecccc
Confidence 355 899999888877777665544333322 2245666665 456778776 8899999999999999999999999
Q ss_pred hhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCCCchHHHHHH
Q 044658 109 VPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVL 188 (364)
Q Consensus 109 ~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 188 (364)
.++|+.+++.++.-||.++.- ..-+.++.+|+.+.+. ++.++ +..|..+.
T Consensus 120 si~FIllFs~if~lEk~~w~L------~l~v~lI~~Glflft~-KsTqf-----------------------~i~Gf~lv 169 (349)
T KOG1443|consen 120 SILFILLFSLIFKLEKFRWAL------VLIVLLIAVGLFLFTY-KSTQF-----------------------NIEGFFLV 169 (349)
T ss_pred HHHHHHHHHHHHHhHHHHHHH------HHHHHHHhhheeEEEe-cccce-----------------------eehhHHHH
Confidence 999999999999999999998 8888888899998885 33222 36788888
Q ss_pred HHHHHHHHhHHHHHHHHhccCC----CchhHHHHHHHHHHHHHHHHHHHhhcCCC-----cccccch-hhHHHHHHHHHh
Q 044658 189 IAFTVVWSSWFLIQARIGKKYP----CKYSSTAIMALFGAIQSAVLSLIVERNPA-----GWAMKGK-LEIITIIYSGVV 258 (364)
Q Consensus 189 l~a~~~~a~~~i~~k~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~l~~~~~~ 258 (364)
+.+.++-++-..+.+.+.++.+ +|....+...-...+.++|..+..|+... .+...++ ..+..+..++.
T Consensus 170 ~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l- 248 (349)
T KOG1443|consen 170 LAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL- 248 (349)
T ss_pred HHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-
Confidence 8888887777777776665533 68888999999999999999988887321 1222222 12333333322
Q ss_pred hhHHHHHH---HHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhh
Q 044658 259 GSGLCYVG---MAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYIL 320 (364)
Q Consensus 259 ~~~~~~~~---~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~ 320 (364)
+..+++.+ -+.-+.+++....++..-..-+-+.+++..+.+|+++...|.|..+...|+..+
T Consensus 249 ~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 249 GGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 33344332 344577788899999999999999999999999999999999999999999998
No 29
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.4e-12 Score=115.47 Aligned_cols=287 Identities=12% Similarity=0.103 Sum_probs=218.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHH--HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHH
Q 044658 7 WKPIIMMVAVNLGLAAANALLKKILDGGLN-HLVIVA--YRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGV 83 (364)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~-p~~~~~--~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (364)
.+.....+...+.=-...+..|..+.. .+ |..+.. ++.+.+.+.+...-.. +--+.++.+++..++.+...++.
T Consensus 11 ~~~l~sa~~Y~~sS~lm~vvNK~vls~-y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf- 87 (314)
T KOG1444|consen 11 SSPLLSALFYCLSSILMTVVNKIVLSS-YNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLF- 87 (314)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHH-
Confidence 344444554555555566777888874 44 555444 7777776666554321 12345567889999989999996
Q ss_pred HHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccc
Q 044658 84 TLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATN 163 (364)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~ 163 (364)
.++...-..+++|++.+..+++.+..|+++++.+..++|.+++... +.++....+|.......+. ..
T Consensus 88 ~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v------~~Sv~~m~~~s~~~~~~d~-sf------ 154 (314)
T KOG1444|consen 88 VGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKV------WASVFAMIIGSVAAAFTDL-SF------ 154 (314)
T ss_pred HHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhH------HHHHHHHHHHHHhhccccc-ee------
Confidence 8899999999999999999999999999999999999999999999 9999999998888764221 11
Q ss_pred cccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhhcCC----
Q 044658 164 HMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVERNP---- 238 (364)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 238 (364)
+..|..+++...++-+.+.+..|+..+..+ +.+...++..+.+...+....++.+...
T Consensus 155 -----------------~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~ 217 (314)
T KOG1444|consen 155 -----------------NLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSL 217 (314)
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHh
Confidence 244899999999999999999998877644 5677888999998888887776665411
Q ss_pred CcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhh
Q 044658 239 AGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLY 318 (364)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~ 318 (364)
..........+..+...++++.++.|. -.+..+..+++..++++..+-..+.+-..++.+++.++...+|..+-++|-.
T Consensus 218 ~~~~~~~~~~~~~~~lScv~gf~isy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv 296 (314)
T KOG1444|consen 218 NFDNWSDSSVLVVMLLSCVMGFGISYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGV 296 (314)
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhh
Confidence 111122234567777777766555555 7788899999999999988888888888888899999999999999999999
Q ss_pred hheecCccc
Q 044658 319 ILLWGKSKE 327 (364)
Q Consensus 319 l~~~~~~~~ 327 (364)
++.+.+.++
T Consensus 297 ~Y~~~~~~~ 305 (314)
T KOG1444|consen 297 LYSYATFRK 305 (314)
T ss_pred HHhhhhhhh
Confidence 998766443
No 30
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.1e-14 Score=122.20 Aligned_cols=264 Identities=16% Similarity=0.125 Sum_probs=204.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc----CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccchh
Q 044658 37 HLVIVAYRQIIATIFLAPVAYFWERK----SRP--KLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVP 110 (364)
Q Consensus 37 p~~~~~~r~~~~~l~l~~~~~~~~~~----~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p 110 (364)
|..+++.++++...+...+-....+. ..+ +.+.+..+.+.-.++.. .+...+-+++++|++++...+-.++..
T Consensus 61 plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLtt 139 (347)
T KOG1442|consen 61 PLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLTT 139 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchhh
Confidence 99999999999887776665432221 112 23455556666677775 777778889999999999999999999
Q ss_pred HHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCCCchHHHHHHHH
Q 044658 111 VSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIA 190 (364)
Q Consensus 111 i~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~ 190 (364)
+|++++.++++|+|-+... ..++.+++.|..+=...++.. +.-...|.+++++
T Consensus 140 vFtVlLtyvllkqkTs~~~------~~~C~lIi~GF~lGvdqE~~~---------------------~~ls~~GvifGVl 192 (347)
T KOG1442|consen 140 VFTVLLTYVLLKQKTSFFA------LGCCLLIILGFGLGVDQEGST---------------------GTLSWIGVIFGVL 192 (347)
T ss_pred hHHHHhHHhhccccccccc------ceeehhheehheecccccccc---------------------CccchhhhHHHHH
Confidence 9999999999999999999 888888888887766433332 2234789999999
Q ss_pred HHHHHHhHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhhc--CCCccccc-chhhHHHHHHHHHhhhHHHHHH
Q 044658 191 FTVVWSSWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVER--NPAGWAMK-GKLEIITIIYSGVVGSGLCYVG 266 (364)
Q Consensus 191 a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~ 266 (364)
+.++-|+..+..|+...... .-..++++..+.+.++.+|...+.+. ....++.. ....|..+...|+++..++|.
T Consensus 193 aSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyv- 271 (347)
T KOG1442|consen 193 ASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYV- 271 (347)
T ss_pred HHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhhe-
Confidence 99999999999998776655 35678889999999999998887654 11122222 345666666666655444443
Q ss_pred HHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCccccc
Q 044658 267 MAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSKEID 329 (364)
Q Consensus 267 ~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 329 (364)
-.+-+|.++|.+.++-..-......+++..+++|.-+...|-|-+++++|-.++.+.|..+.+
T Consensus 272 Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~ 334 (347)
T KOG1442|consen 272 TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMR 334 (347)
T ss_pred eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHH
Confidence 455688899999999999999999999999999999999999999999999999886654433
No 31
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.52 E-value=2.6e-14 Score=113.57 Aligned_cols=125 Identities=25% Similarity=0.369 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 044658 18 LGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLGFEYT 97 (364)
Q Consensus 18 ~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 97 (364)
++||...++.|...++ .||...+++|+..+.+ ++++....+++...+.+++++......+.++..+++.+++++++++
T Consensus 1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 4799999999999985 9999999999999998 6666555554444567788888888888886699999999999999
Q ss_pred CcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhe
Q 044658 98 TAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLT 150 (364)
Q Consensus 98 ~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~ 150 (364)
+++.++++.++.|+++.+++++++||++++.+ ++|+.+++.|+.++.
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~------~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQ------IIGIILIIIGVVLIS 125 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999998874
No 32
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.45 E-value=4.5e-13 Score=106.34 Aligned_cols=125 Identities=23% Similarity=0.426 Sum_probs=107.8
Q ss_pred HHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHh
Q 044658 193 VVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVE 272 (364)
Q Consensus 193 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ 272 (364)
++||.+.+..|+..++. ++.....+++..+.+ ..+.....+... ....+...+...++.+++++..++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 47899999999999986 589999999999998 666655554322 33445567788888898888999999999999
Q ss_pred ccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhe
Q 044658 273 QRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILL 321 (364)
Q Consensus 273 ~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~ 321 (364)
+.+++.++.+.+++|+++.+++++++||++++.+++|+++++.|+.+..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 33
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.40 E-value=3.1e-11 Score=104.25 Aligned_cols=279 Identities=11% Similarity=0.098 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHh---cCC----ChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-------------HHHHHHHHHHHH
Q 044658 21 AAANALLKKILD---GGL----NHLVIVAYRQIIATIFLAPVAYFWERKSRPKLT-------------VPILCQLFFSAL 80 (364)
Q Consensus 21 ~~~~~~~k~~~~---~~~----~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~-------------~~~~~~~~~~g~ 80 (364)
..+.+..|+.-+ ++- +|+..+..-++.-.+++..+.+.+.+.+.+... -+. ...+...+
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p-~lfl~Pal 94 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP-VLFLPPAL 94 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc-ceecChHH
Confidence 445566676532 222 378888777777778888887766554332111 111 12334677
Q ss_pred HHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccc
Q 044658 81 TGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLG 160 (364)
Q Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~ 160 (364)
+. ..+..+.|.|+.+++++..+++.....+|+.+++.-+++.+++.++ |+|+....+|++++...+-...
T Consensus 95 ~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~q------Wl~i~fv~lGlviVg~~d~~~~--- 164 (372)
T KOG3912|consen 95 CD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQ------WLGILFVSLGLVIVGSLDVHLV--- 164 (372)
T ss_pred HH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhh------HHHHHHHHhhhheeeeeecccc---
Confidence 76 8888999999999999999999999999999999999999999999 9999999999999975321100
Q ss_pred ccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhhc-CC
Q 044658 161 ATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVER-NP 238 (364)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 238 (364)
..+-.+-.+...|+++.+++-+.-|+.+++.+|..++.+ +|.....+..+++.+.+..+...... +.
T Consensus 165 -----------~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~ 233 (372)
T KOG3912|consen 165 -----------TDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPS 233 (372)
T ss_pred -----------cCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheec
Confidence 000111345678999999999999999999999888765 78999999999996655444433221 00
Q ss_pred C-cccccc---hhhHH---------HHHHHHHhhhHHHHHHHHH----HHhccCcceehcchhhhHHHHHHHHHHHhcCC
Q 044658 239 A-GWAMKG---KLEII---------TIIYSGVVGSGLCYVGMAW----CVEQRGPVFTSAFTPLIQIFVAIVGFFILHER 301 (364)
Q Consensus 239 ~-~~~~~~---~~~~~---------~l~~~~~~~~~~~~~~~~~----a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~ 301 (364)
. .+...+ ...|. ..++++..+..++..+++. ..|..++++-.++-.+...+--+++.....|.
T Consensus 234 ~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~ 313 (372)
T KOG3912|consen 234 GDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEY 313 (372)
T ss_pred CCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHH
Confidence 0 110000 01111 1223333333344333333 35677888888999999999999999999999
Q ss_pred ccchhhHHHHHHHHhhhhhe
Q 044658 302 IYPGSVVGSIIVVIGLYILL 321 (364)
Q Consensus 302 ~~~~~~~G~~li~~g~~l~~ 321 (364)
++..|+.|..+.+.|+++++
T Consensus 314 f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 314 FHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987
No 34
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.37 E-value=5.4e-12 Score=105.34 Aligned_cols=273 Identities=15% Similarity=0.166 Sum_probs=199.6
Q ss_pred HHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCccee
Q 044658 25 ALLKKILDG-GLN-HLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFS 102 (364)
Q Consensus 25 ~~~k~~~~~-~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 102 (364)
+-.|+.+.. |++ -+.+.+++.+...+-+..+-..+.-+ .+.++....+..+++. ....+.-..+++|++.+..
T Consensus 23 ltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~----fR~t~aK~WfpiSfLL-v~MIyt~SKsLqyL~vpiY 97 (309)
T COG5070 23 LTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVE----FRLTKAKKWFPISFLL-VVMIYTSSKSLQYLAVPIY 97 (309)
T ss_pred HhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhh----eehhhhhhhcCHHHHH-HHHHHhcccceeeeeeeHH
Confidence 344554431 222 56666777766666555544322211 2233333444566664 6777778899999999999
Q ss_pred ehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCCCch
Q 044658 103 CAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWA 182 (364)
Q Consensus 103 ~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (364)
+++.++..+.++.....+++.|++-.+ ..+.++.+..-+.-.+.+...... +.+..+
T Consensus 98 TiFKNltII~iAygEvl~Fgg~vtsl~------l~SFilMvlSS~va~w~D~q~~~~-----------------~~~~lN 154 (309)
T COG5070 98 TIFKNLTIILIAYGEVLFFGGRVTSLE------LLSFILMVLSSVVATWGDQQASAF-----------------KAQILN 154 (309)
T ss_pred HHhccceeehhHhhHHHHhcCccchhh------HHHHHHHHHHHHHhccchhhHHHH-----------------HhcccC
Confidence 999999999999999999999999999 998888888877777644322211 234556
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhhcCCCc--ccccchhhHHHHHHHHHhh
Q 044658 183 IGSIVLIAFTVVWSSWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVERNPAG--WAMKGKLEIITIIYSGVVG 259 (364)
Q Consensus 183 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 259 (364)
.|.+++...++..+.+....|+..+-.+ .....++|..+.+..+++...+..+..... ....+.....+++..|+..
T Consensus 155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 7999999999999999998887765432 357889999999998888888887752221 1222334556777777754
Q ss_pred hHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCcc
Q 044658 260 SGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSK 326 (364)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~ 326 (364)
.+++ ++-.|.++.++.+..+++..++-.-..+-|.++++|+.+...+..+.+-..+-.++...+++
T Consensus 235 vgiS-y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 235 VGIS-YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred hhhh-hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 45889999999999999999999999999999999999999999998888777777665544
No 35
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.34 E-value=7.3e-10 Score=97.76 Aligned_cols=254 Identities=17% Similarity=0.145 Sum_probs=176.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehccc-chhHHH
Q 044658 35 LNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFIN-IVPVST 113 (364)
Q Consensus 35 ~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~-~~pi~~ 113 (364)
-+|....+--.+.+.++-+.... ..++.. ..+.+.+...++.|++- .+++..++.++++..++.+.++.. ++-+.+
T Consensus 10 G~~~~Q~lG~t~Gali~alv~~~-~~~p~~-~~~~~~~~~~~lsG~~W-~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~ 86 (269)
T PF06800_consen 10 GKPANQILGTTIGALIFALVVFL-FRQPAF-SMSGTSFIVAFLSGAFW-AIGQIGQFKSFKKIGVSKTMPISTGLQLVGT 86 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-HhCCCc-chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcceeeeccchhHHHHHH
Confidence 34555555444444444443333 222221 12347888888999996 999999999999999999999976 888889
Q ss_pred HHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCCCchHHHHHHHHHHH
Q 044658 114 FLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTV 193 (364)
Q Consensus 114 ~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~ 193 (364)
.+.++++++|--+..+ .-...+++++.++|+.+....++.... +++..+...|.+..+++.+
T Consensus 87 sl~gv~~fgEW~~~~~--~~~G~~Al~liiiGv~lts~~~~~~~~----------------~~~~~~~~kgi~~Ll~sti 148 (269)
T PF06800_consen 87 SLIGVLFFGEWTTTTQ--KIIGFLALVLIIIGVILTSYQDKKSDK----------------SSSKSNMKKGILALLISTI 148 (269)
T ss_pred HHHHHhhcCCCCCcch--HHHHHHHHHHHHHHHHHhccccccccc----------------cccccchhhHHHHHHHHHH
Confidence 9999999999888776 111133788889999988764433211 1124556789999999999
Q ss_pred HHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhc
Q 044658 194 VWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQ 273 (364)
Q Consensus 194 ~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 273 (364)
.|..|.+..|... . ++.....-+.+-..+....+....+.. .+ ....| .-+..|+ .-.+++.++..+.+.
T Consensus 149 gy~~Y~~~~~~~~--~-~~~~~~lPqaiGm~i~a~i~~~~~~~~--~~---~k~~~-~nil~G~-~w~ignl~~~is~~~ 218 (269)
T PF06800_consen 149 GYWIYSVIPKAFH--V-SGWSAFLPQAIGMLIGAFIFNLFSKKP--FF---EKKSW-KNILTGL-IWGIGNLFYLISAQK 218 (269)
T ss_pred HHHHHHHHHHhcC--C-ChhHhHHHHHHHHHHHHHHHhhccccc--cc---ccchH-HhhHHHH-HHHHHHHHHHHhHHh
Confidence 9999999877632 2 456666655554444444443332111 11 12233 3345554 456889999999999
Q ss_pred cCcceehcchhhhHHHHHHHHHHHhcCCccch----hhHHHHHHHHhhhh
Q 044658 274 RGPVFTSAFTPLIQIFVAIVGFFILHERIYPG----SVVGSIIVVIGLYI 319 (364)
Q Consensus 274 ~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~----~~~G~~li~~g~~l 319 (364)
.+.+..=.+..+.++++.+.+.+++||+=+.. .++|.+++++|.++
T Consensus 219 ~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 219 NGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred ccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999998765 45688888777654
No 36
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.30 E-value=4.7e-11 Score=107.42 Aligned_cols=134 Identities=18% Similarity=0.331 Sum_probs=114.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDGGLN--HLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTG 82 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~--p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (364)
...+|.++.++++++|+...+..|+..++ .+ +.....+++.++.+++.++.....+ .+..+.+++...+..++++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 201 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGP--NPQALSLQWGALLYLGLIG 201 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHH
Confidence 45689999999999999999999998873 66 4455557899999988888754332 2234667787788888887
Q ss_pred HHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhh
Q 044658 83 VTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGAL 147 (364)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~ 147 (364)
...++.++++++++.+++.++.+.++.|++++++++++++|+++..+ +.|+.+.+.|+.
T Consensus 202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~------~~G~~li~~g~~ 260 (260)
T TIGR00950 202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ------LIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999999999 999999999873
No 37
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.19 E-value=1.1e-09 Score=99.67 Aligned_cols=277 Identities=17% Similarity=0.198 Sum_probs=160.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCCHHHH-HHHHHHHHH
Q 044658 4 CRQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRP-KLTVPIL-CQLFFSALT 81 (364)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~-~~~~~~~-~~~~~~g~~ 81 (364)
.+...|..+.+.++++.+....+-|+...+ .+ +...+. ...++.+ ...++.|++
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r-~~-----------------------~~~~~~~~~~~~~l~~~~W~~G~~ 58 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLR-LP-----------------------RGSLRAGSGGRSYLRRPLWWIGLL 58 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-----------------------cccccccchhhHHHhhHHHHHHHH
Confidence 356779999999999999999999987653 10 000001 0111222 234566776
Q ss_pred HHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccc
Q 044658 82 GVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGA 161 (364)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~ 161 (364)
...++..+.+.|+.+.|++.++++..+.-++.++++..++|||+++.+ +.|+.+++.|..++......+.+..
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~------~~G~~l~i~G~~liv~~~~~~~~~~- 131 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRD------IVGCALIILGSVLIVIFAPKEEPIH- 131 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhH------HhhHHHHHhhheeeEEeCCCCCCcC-
Confidence 668888999999999999999999999999999999999999999999 9999999999998875432221110
Q ss_pred cccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHH-------HHHHHh
Q 044658 162 TNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSA-------VLSLIV 234 (364)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 234 (364)
+. ++-...-.+........ +...+...+.....+|..++ +...........++...+ .+....
T Consensus 132 ----t~---~~l~~~~~~~~fl~y~~-~~~~~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~ 201 (300)
T PF05653_consen 132 ----TL---DELIALLSQPGFLVYFI-LVLVLILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTF 201 (300)
T ss_pred ----CH---HHHHHHhcCcceehhHH-HHHHHHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHh
Confidence 00 00000000000011111 11111222222222222221 111111111122221111 111111
Q ss_pred hcCCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhH-HHHHHHHHHHhcCCcc--c----hhh
Q 044658 235 ERNPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQ-IFVAIVGFFILHERIY--P----GSV 307 (364)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~p-v~~~~~~~~~l~e~~~--~----~~~ 307 (364)
. ....+ ..+..|..++. .+.+........++++++.+++.+.++.+..= ..+++-+.++++|.-+ . ...
T Consensus 202 ~-g~~~f--~~~~~y~l~~~-~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~ 277 (300)
T PF05653_consen 202 S-GDNQF--TYPLTYLLLLV-LVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFL 277 (300)
T ss_pred c-Cchhh--hhhHHHHHHHH-HHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 1 11111 12234443333 33456677788899999999999888776654 5555666677887643 3 356
Q ss_pred HHHHHHHHhhhhheecCc
Q 044658 308 VGSIIVVIGLYILLWGKS 325 (364)
Q Consensus 308 ~G~~li~~g~~l~~~~~~ 325 (364)
.|+.+++.|+++....|+
T Consensus 278 ~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 278 CGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHhhheeeccCc
Confidence 788888999988876543
No 38
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.18 E-value=2e-10 Score=99.23 Aligned_cols=265 Identities=9% Similarity=0.012 Sum_probs=179.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCcceeehcccchhHHHHH
Q 044658 37 HLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLGFEY-TTAAFSCAFINIVPVSTFL 115 (364)
Q Consensus 37 p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~-~~~~~~~~l~~~~pi~~~l 115 (364)
-..++|.+++.-++-=+++.- .-...+++.+.|++..... .+ +..+.+-++++++ ++...-.++.+-.++.++.
T Consensus 33 gNLITFaqFlFia~eGlif~s-kf~~~k~kiplk~Y~i~V~--mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~ 107 (330)
T KOG1583|consen 33 GNLITFAQFLFIATEGLIFTS-KFFTVKPKIPLKDYAITVA--MF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI 107 (330)
T ss_pred eeehHHHHHHHHHHhceeeec-cccccCCCCchhhhheehh--ee--eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence 356667666655444333321 1112224556666664332 22 5667788899988 7888889999999999999
Q ss_pred HhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccccccccccc-ccCCCCCCCCchHHHHHHHHHHHH
Q 044658 116 LALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVN-TMNSSKKADDWAIGSIVLIAFTVV 194 (364)
Q Consensus 116 l~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~l~a~~~ 194 (364)
++++++++|.+.+| +.++++..+|+.+.++.+..+... ..++- +++.......+..|+.+..++-+.
T Consensus 108 ~g~il~~k~Ys~~Q------y~Sv~~iTiGiiIcTl~s~~d~~~------~~~~l~~~~~~~~~~~w~iGi~lL~~al~~ 175 (330)
T KOG1583|consen 108 LGWILLGKRYSLRQ------YSSVLMITIGIIICTLFSSKDGRS------KLSGLDSGSAQSDFFWWLIGIALLVFALLL 175 (330)
T ss_pred HHHHhccceeehhh------hhhHHhhhhhheeEEeecCcchhh------hhcccccCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999998765443321 01111 222233445567899999999999
Q ss_pred HHhHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhh--------cC---CCcccccchhhHHHHHHHHHhhhHH
Q 044658 195 WSSWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVE--------RN---PAGWAMKGKLEIITIIYSGVVGSGL 262 (364)
Q Consensus 195 ~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (364)
.|.-.+.++..-+++. ++-+.+++.-+......+...--.. .+ .+.....-|..|..++. ..+
T Consensus 176 sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~-----n~L 250 (330)
T KOG1583|consen 176 SAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF-----NVL 250 (330)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHH-----HHH
Confidence 9998888887777655 6777888887766544333221000 00 00111112445555433 334
Q ss_pred HHHHHHHHHh----ccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheec
Q 044658 263 CYVGMAWCVE----QRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWG 323 (364)
Q Consensus 263 ~~~~~~~a~~----~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~ 323 (364)
.++...+++. +.++.++++...++-.++.+++.+.++.++++.-|+|..++++|.+++.-.
T Consensus 251 ~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 251 TQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 456778889999999999999999999999999999999999999998643
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.18 E-value=1.1e-10 Score=95.77 Aligned_cols=213 Identities=13% Similarity=0.087 Sum_probs=158.5
Q ss_pred HHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccc
Q 044658 84 TLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATN 163 (364)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~ 163 (364)
.+.++.|..|++.++++.++.+..+.-.|+.+++++.+++|+...+ +++.++++.|++++.+.++.
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~k------IlaailAI~GiVmiay~DN~-------- 129 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFK------ILAAILAIGGIVMIAYADNE-------- 129 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhh------HHHHHHHhCcEEEEEeccch--------
Confidence 7789999999999999999999999999999999999999999999 99999999999999865543
Q ss_pred cccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCC--CchhHHHHHHHHHH-HHHHHHHHHhhcCCCc
Q 044658 164 HMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYP--CKYSSTAIMALFGA-IQSAVLSLIVERNPAG 240 (364)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 240 (364)
..+.+.|+.+++.++..-|+|-+.-|+.....+ +....+.-..++.. +...+.........+.
T Consensus 130 --------------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~ 195 (290)
T KOG4314|consen 130 --------------HADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEH 195 (290)
T ss_pred --------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHH
Confidence 344589999999999999999999998876533 21111111111111 1222222111111222
Q ss_pred ccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhh
Q 044658 241 WAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYIL 320 (364)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~ 320 (364)
+.......|..+...+.+ +..-+++.+.++..+.|...++-+.....-....+.++-+-..+...+.|.++|+.|.++.
T Consensus 196 ~qsFA~~PWG~l~G~A~L-~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLi 274 (290)
T KOG4314|consen 196 LQSFAAAPWGCLCGAAGL-SLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILI 274 (290)
T ss_pred HHHHhhCCchhhhhHHHH-HHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhe
Confidence 221122346776666654 3344566888999999999999999998889999987666678889999999999999888
Q ss_pred eecCc
Q 044658 321 LWGKS 325 (364)
Q Consensus 321 ~~~~~ 325 (364)
.....
T Consensus 275 iiP~d 279 (290)
T KOG4314|consen 275 IIPED 279 (290)
T ss_pred ecccc
Confidence 76443
No 40
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.17 E-value=3e-11 Score=94.26 Aligned_cols=104 Identities=22% Similarity=0.351 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhh
Q 044658 42 AYRQIIATIFLAPVAYFWERKS--RPKLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALP 119 (364)
Q Consensus 42 ~~r~~~~~l~l~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~ 119 (364)
.+|+..+.+++..+...+++.+ .+..+++++.+....|+++...++.++++|+++.+ +.++++.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 5788899888888776643321 12234466677777788875599999999999999 58889999999999999999
Q ss_pred hccccccccccccccchhHHHHHHhhhhhheec
Q 044658 120 FRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLY 152 (364)
Q Consensus 120 ~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~ 152 (364)
++|||+++++ +.++.++++|+.++...
T Consensus 81 ~~~er~~~~~------~~a~~l~~~Gv~li~~~ 107 (113)
T PF13536_consen 81 FFKERLSPRR------WLAILLILIGVILIAWS 107 (113)
T ss_pred HhcCCCCHHH------HHHHHHHHHHHHHHhhh
Confidence 9999999999 99999999999999853
No 41
>PRK13499 rhamnose-proton symporter; Provisional
Probab=99.17 E-value=1.3e-08 Score=93.47 Aligned_cols=300 Identities=13% Similarity=0.048 Sum_probs=180.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHH---HHHHHhh-hcCCCCCCHHHHHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAY-RQIIATIFLA---PVAYFWE-RKSRPKLTVPILCQLFFSA 79 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~-r~~~~~l~l~---~~~~~~~-~~~~~~~~~~~~~~~~~~g 79 (364)
+...|++..+++.++||+..+..|+. . ..+-..+ .. -.+++.++.- .....+. .......+.+.+...++.|
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~~-k-~w~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKKV-K-KWSWETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hhHHHHHHHHHHHHHhhccccccccc-C-CCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 56789999999999999999999984 3 2441111 11 1111111111 0110000 0111224577888888899
Q ss_pred HHHHHHHHHHHHHhccccCcceeehccc-chhHHHHHHhhhhccccc---cccccccccchhHHHHHHhhhhhheeccCC
Q 044658 80 LTGVTLAQYFFLLGFEYTTAAFSCAFIN-IVPVSTFLLALPFRLEKL---NMKSLDGRSKVLGAIVCIGGALTLTLYKGK 155 (364)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~l~~-~~pi~~~ll~~~~l~e~~---~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~ 155 (364)
++- ..++..++.++++...+.+..+.. ++-+...++..++++|=. +..+ +..-.+|+++.++|+++.......
T Consensus 81 ~~W-~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~--g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 81 ALW-GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNG--GRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHH-HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccch--HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 996 999999999999999999977754 888999999999988643 2222 333478899999999999852211
Q ss_pred cccccccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHH-------HHHHHHhccCCCchhHHHHHHH---HHHH
Q 044658 156 PFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWF-------LIQARIGKKYPCKYSSTAIMAL---FGAI 225 (364)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------i~~k~~~~~~~~~~~~~~~~~~---~~~~ 225 (364)
..+. ...++.++.+..+|++.++++++.++.|. ...+...+...++......+.. .+.+
T Consensus 158 k~~~-----------~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~ 226 (345)
T PRK13499 158 KERK-----------MGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGA 226 (345)
T ss_pred cccc-----------cccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHH
Confidence 1100 00000224567899999999999999999 4333321111133333333333 3333
Q ss_pred HHH-HHHHHh--h-cCCCcccc--cchhhHHHH----HHHHHhhhHHHHHHHHHHHhccCcceehc----chhhhHHHHH
Q 044658 226 QSA-VLSLIV--E-RNPAGWAM--KGKLEIITI----IYSGVVGSGLCYVGMAWCVEQRGPVFTSA----FTPLIQIFVA 291 (364)
Q Consensus 226 ~~~-~~~~~~--~-~~~~~~~~--~~~~~~~~l----~~~~~~~~~~~~~~~~~a~~~~~~~~~s~----~~~l~pv~~~ 291 (364)
+.- .+.... . +....... .+...+..- +..|+ .=.+++++|..+..+.+...... .+.+..+++.
T Consensus 227 ~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viist 305 (345)
T PRK13499 227 ITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGN 305 (345)
T ss_pred HHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHH
Confidence 222 222211 1 11111111 111122222 23332 35567788888888776544433 3478889999
Q ss_pred HHHHHHhcCCcc------chhhHHHHHHHHhhhhheec
Q 044658 292 IVGFFILHERIY------PGSVVGSIIVVIGLYILLWG 323 (364)
Q Consensus 292 ~~~~~~l~e~~~------~~~~~G~~li~~g~~l~~~~ 323 (364)
+++. ++||.=+ ..-++|++++++|..+....
T Consensus 306 lwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 306 LWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred Hhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9998 5999866 45689999999998887654
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.16 E-value=5.9e-10 Score=102.23 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=109.8
Q ss_pred CchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCccc--ccchhhHHHHHHHHH
Q 044658 180 DWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWA--MKGKLEIITIIYSGV 257 (364)
Q Consensus 180 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 257 (364)
+..+|++++++++++|+...+..|.. .+. +|.+..++++.++.+.+.+......+ ..... ..+...+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQ-WSYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHcCHHHH-HHHHHHH
Confidence 45789999999999999999999875 454 58999999999998877666544321 11100 0112222 2333566
Q ss_pred hhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhe
Q 044658 258 VGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILL 321 (364)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~ 321 (364)
++....+.++++++++.+++.++++.++.|+++.+++++++||+++..+++|+++.++|+.+..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999999999999999999999999999999999999999999998875
No 43
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.13 E-value=1.2e-09 Score=90.00 Aligned_cols=138 Identities=16% Similarity=0.195 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccC------CCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccc--------c-chhh
Q 044658 184 GSIVLIAFTVVWSSWFLIQARIGKKY------PCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAM--------K-GKLE 248 (364)
Q Consensus 184 G~~~~l~a~~~~a~~~i~~k~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~ 248 (364)
|.++++.+.++.+++.++.|+..++. .++..+..+....+.+.+.+..+..+........ . .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999988772 2789999999999999999998888763211110 0 2244
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 249 IITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
+..++..++ .....+...+..+++.+|...+++..+..+...+++++++||+++..+++|+.+.++|.+++.+
T Consensus 81 ~~~~~~~~~-~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGL-LAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 555555555 4556777788999999999999999999999999999999999999999999999999998864
No 44
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.10 E-value=1.7e-09 Score=99.14 Aligned_cols=138 Identities=12% Similarity=0.054 Sum_probs=113.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 044658 6 QWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTL 85 (364)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (364)
...|.++.+.++++|+...+..|+..+ +.++...... ..++.+++.++...... ....+...+...+..|+++..+
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~ 221 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTAL 221 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999876 4788776544 45566666666543221 2224556666667788888789
Q ss_pred HHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheecc
Q 044658 86 AQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYK 153 (364)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~ 153 (364)
++.++++++++.+++.++++.++.|+++.++++++++|+++..+ ++|..+.+.|++......
T Consensus 222 ~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~------~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 222 PYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQ------WLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999 999999999999997544
No 45
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.09 E-value=1.6e-09 Score=97.26 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCC---Ccccccchhh-HHHHHHHHHh
Q 044658 183 IGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNP---AGWAMKGKLE-IITIIYSGVV 258 (364)
Q Consensus 183 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~~~ 258 (364)
+|.++.++++++|+...+..|.. .+. +|.+..+++++++.+.+.+......+.. .......... +..+...|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~- 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL- 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH-
Confidence 38899999999999999999984 444 6899999999999887766554432110 0111111222 333444554
Q ss_pred hhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhe
Q 044658 259 GSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILL 321 (364)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~ 321 (364)
.....+.++++++++++++.++.+.++.|+++.++++++++|+++..+++|.++.++|+.+..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999999999999999999988764
No 46
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.07 E-value=1.7e-09 Score=99.00 Aligned_cols=138 Identities=15% Similarity=0.099 Sum_probs=114.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 044658 6 QWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTL 85 (364)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (364)
...|.++.++++++|+...+..|.... -++...+.+++.++.+.+.++............+.+.|..+...++++..+
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~ 225 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSII 225 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHH
Confidence 356999999999999999999998643 345566778888888887777653322111123567788888888887789
Q ss_pred HHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 86 AQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
++.++++++++.+++.++.+..+.|++++++++++++|+++..+ ++|..+.+.|+.+...
T Consensus 226 ~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~------iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 226 AISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIE------WLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999864
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.06 E-value=3.1e-09 Score=99.39 Aligned_cols=139 Identities=9% Similarity=0.120 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCC----CCCCHHHHHHHHHHHHH
Q 044658 7 WKPIIMMVAVNLGLAAANALLKKILDGGLN-HLVIVAYRQIIATIFLAPVAYFWERKSR----PKLTVPILCQLFFSALT 81 (364)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~ 81 (364)
..|.++++.++++|+.+.++.|....+ .+ +...+++.+.++.+.+.+......+... ...+...+ ..+..++.
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~i~y~~i~ 265 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLI-TIVTMAII 265 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHH-HHHHHHHH
Confidence 347889999999999999999988775 64 4566777777776666555443322111 11222222 23345555
Q ss_pred HHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccC
Q 044658 82 GVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKG 154 (364)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~ 154 (364)
. .+++.++++++++.+++.++++.++.|++++++++++++|+++..+ ++|..+.+.|+++....++
T Consensus 266 t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~------~iG~~LIl~Gv~l~~~~~~ 331 (358)
T PLN00411 266 T-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC------LIGGILITLGFYAVMWGKA 331 (358)
T ss_pred H-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHHhhhh
Confidence 4 6789999999999999999999999999999999999999999999 9999999999999975433
No 48
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.04 E-value=7.8e-09 Score=94.13 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHHH
Q 044658 185 SIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLCY 264 (364)
Q Consensus 185 ~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (364)
..+.++++++++...+..|+..++. ++ ...+......+...+....... ...+...+ ..++.....+.++....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE-PD--FLWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch-hH--HHHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence 4678999999999999999887663 22 3455555666666665544211 12233222 334444445555678889
Q ss_pred HHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheec
Q 044658 265 VGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWG 323 (364)
Q Consensus 265 ~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~ 323 (364)
.+++++.++.+++.++++.+++|+++.+++++++||+++..+++|+.+++.|+.+....
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999887643
No 49
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=99.01 E-value=2e-10 Score=97.63 Aligned_cols=280 Identities=16% Similarity=0.155 Sum_probs=195.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 044658 8 KPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQ 87 (364)
Q Consensus 8 ~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (364)
..++.+++-++.||+.+....+. +-.|.+.+.--.+.+.++-+.++++ ..|..+.+.+..-++.|.+- ..++
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~----~~p~~T~~~~iv~~isG~~W-s~GQ 73 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF----VSPELTLTIFIVGFISGAFW-SFGQ 73 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee----ecCccchhhHHHHHHhhhHh-hhhh
Confidence 35678899999999998887766 5677777766555555554444433 23456778888888888885 9999
Q ss_pred HHHHHhccccCcceeehccc-chhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccccccc
Q 044658 88 YFFLLGFEYTTAAFSCAFIN-IVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMT 166 (364)
Q Consensus 88 ~~~~~al~~~~~~~~~~l~~-~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~ 166 (364)
..++.|+++..++.+.++.. ++-+-+.+.+++.++|=.+..+ -....+++++.+.|+.+-...+..+
T Consensus 74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~--~IlG~iAliliviG~~lTs~~~~~n---------- 141 (288)
T COG4975 74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQ--IILGFIALILIVIGIYLTSKQDRNN---------- 141 (288)
T ss_pred hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchh--HHHHHHHHHHHHHhheEeeeecccc----------
Confidence 99999999999999999976 8888999999999999888776 1111245677777887776533211
Q ss_pred ccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccch
Q 044658 167 NDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGK 246 (364)
Q Consensus 167 ~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (364)
-+.++.++...|....+.+.+.|-.|.+..+...-+.-+...-....+..+++. +... +. +....
T Consensus 142 ------k~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali---~~~~-~~-----~~~~~ 206 (288)
T COG4975 142 ------KEEENPSNLKKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALI---LGFF-KM-----EKRFN 206 (288)
T ss_pred ------ccccChHhhhhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHH---Hhhc-cc-----ccchH
Confidence 111234567889999999999999999988766533213232223333333322 2221 11 11122
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchh----hHHHHHHHHhhhhhee
Q 044658 247 LEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGS----VVGSIIVVIGLYILLW 322 (364)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~----~~G~~li~~g~~l~~~ 322 (364)
+..+.-+..|.+ =..++..+..+.++.+..+.=-+..+..+++.+-+.++++|+=+..+ ++|++++++|..+...
T Consensus 207 K~t~~nii~G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 207 KYTWLNIIPGLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HHHHHHHhhHHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 333444555653 56788889999998888777778888899999999999999988765 5788888888776654
Q ss_pred c
Q 044658 323 G 323 (364)
Q Consensus 323 ~ 323 (364)
.
T Consensus 286 ~ 286 (288)
T COG4975 286 A 286 (288)
T ss_pred e
Confidence 3
No 50
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.00 E-value=3.9e-09 Score=96.79 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 044658 7 WKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLA 86 (364)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 86 (364)
..|.++++.++++|+...++.|...+ +.++....+ ..+.+.+.+..... .......+...|..++..++.. .++
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~t-~~~ 228 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLS-PQPAMVFSLPAIIKLLLAAAAM-GFG 228 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHh-cCccccCCHHHHHHHHHHHHHH-HHH
Confidence 45889999999999999999999876 477765433 23333333333222 2112235567777777777654 889
Q ss_pred HHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 87 QYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 87 ~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
+.++++++++.+++.++.+.++.|++..++++++++|+++..+ ++|..+++.|+.+...
T Consensus 229 ~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~------~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 229 YAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSF------WQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHhHHHHhh
Confidence 9999999999999999999999999999999999999999999 9999999999988864
No 51
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.98 E-value=2e-08 Score=86.71 Aligned_cols=262 Identities=11% Similarity=0.081 Sum_probs=186.4
Q ss_pred CCCh--HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccchhH
Q 044658 34 GLNH--LVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPV 111 (364)
Q Consensus 34 ~~~p--~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi 111 (364)
++.| +.+++.++++-..+-+...... +.++. ...|+.+..++.+. .....+..-++.|++-..-.++..+--+
T Consensus 70 gfkp~GWylTlvQf~~Ysg~glie~~~~-~~k~r---~iP~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKli 144 (367)
T KOG1582|consen 70 GFKPFGWYLTLVQFLVYSGFGLIELQLI-QTKRR---VIPWRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLI 144 (367)
T ss_pred cCcccchHHHHHHHHHHHhhhheEEEee-cccce---ecchhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhh
Confidence 3553 4566666655444333322111 11222 23344444555554 6677777888888887777788877777
Q ss_pred HHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCCCchHHHHHHHHH
Q 044658 112 STFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAF 191 (364)
Q Consensus 112 ~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 191 (364)
=+++.+.++-+.|.++.+ .++..+..+|+.+.++.++... .+-+..|+.+.-.|
T Consensus 145 PVmiggifIqGkRY~v~d------~~aA~lm~lGli~FTLADs~~s--------------------PNF~~~Gv~mIsgA 198 (367)
T KOG1582|consen 145 PVMIGGIFIQGKRYGVHD------YIAAMLMSLGLIWFTLADSQTS--------------------PNFNLIGVMMISGA 198 (367)
T ss_pred hhhheeeeeccccccHHH------HHHHHHHHHHHHhhhhcccccC--------------------CCcceeeHHHHHHH
Confidence 778889999999999999 9999999999999998665322 22246899998888
Q ss_pred HHHHHhHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHHHhhcCCCcccc---cchhhHHHHHHHHHhhhHHHHHHH
Q 044658 192 TVVWSSWFLIQARIGKKYP-CKYSSTAIMALFGAIQSAVLSLIVERNPAGWAM---KGKLEIITIIYSGVVGSGLCYVGM 267 (364)
Q Consensus 192 ~~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~ 267 (364)
-++-|.-.-.+++..+..+ +...+.++...++.+.+.......+.-...|+. .+.......++.+ +.+.++....
T Consensus 199 Ll~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s-~~gylG~~~V 277 (367)
T KOG1582|consen 199 LLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS-LAGYLGIVFV 277 (367)
T ss_pred HHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH-HHhHhhHHHH
Confidence 8898888777888877655 345677778888887777666665543333321 1112333344444 3566777777
Q ss_pred HHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCccc
Q 044658 268 AWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSKE 327 (364)
Q Consensus 268 ~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 327 (364)
..-++..++..+..+....-.+++++++++|..+++..-.-|..+++.|+++-.+.++.+
T Consensus 278 LalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk 337 (367)
T KOG1582|consen 278 LALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNK 337 (367)
T ss_pred HHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCC
Confidence 778888999999999999999999999999999999999999999999999988877443
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.94 E-value=3.9e-09 Score=92.64 Aligned_cols=211 Identities=13% Similarity=0.049 Sum_probs=128.1
Q ss_pred ceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccc--cccccccccccccC-CCC
Q 044658 100 AFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYL--GATNHMTNDVNTMN-SSK 176 (364)
Q Consensus 100 ~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~--~~~~~~~~~~~~~~-~~~ 176 (364)
.......+..++++++..+.+.++|.+..+ +++.++...|+....+.+.+.... ........+.++.. ...
T Consensus 5 Pa~~~~~s~~l~~v~l~~~~~~~~~~~~~~------i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~ 78 (222)
T TIGR00803 5 PIHIIFKQNNLVLIALGNLLAAGKQVTQLK------ILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTL 78 (222)
T ss_pred cchHHHHhcchHHHHHhcccccceeeehHH------HHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccc
Confidence 344556778888888888888888888888 888888888887654432211000 00000000000000 001
Q ss_pred CCCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhH-HHHHHHHHHHHHHHHHHHhhcCC-Cccc--ccchhhHHHH
Q 044658 177 KADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSS-TAIMALFGAIQSAVLSLIVERNP-AGWA--MKGKLEIITI 252 (364)
Q Consensus 177 ~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~l 252 (364)
...+...|....+.+..+-+...+..++..++.+..... .....+.+.+.........+.+. ..+. ...+...+.
T Consensus 79 ~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (222)
T TIGR00803 79 MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWI- 157 (222)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHH-
Confidence 123557788888888888888888888877664321111 11112222221111111111110 0111 011111111
Q ss_pred HHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhh
Q 044658 253 IYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYIL 320 (364)
Q Consensus 253 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~ 320 (364)
-++...++..+..+.+|+.++...+....++++++.+++++++||+++..+++|+.+++.|++++
T Consensus 158 ---~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 158 ---VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred ---HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 22345667778999999999999999999999999999999999999999999999999997754
No 53
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.87 E-value=6.7e-08 Score=76.54 Aligned_cols=122 Identities=14% Similarity=0.112 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHH
Q 044658 184 GSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLC 263 (364)
Q Consensus 184 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (364)
|.++.+++.++-+...++.|+-.++.++ ...... . +... .. . .+ ....++.|+++.+++
T Consensus 3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~~~~-~~-~----------~~---p~~~i~lgl~~~~la 61 (129)
T PRK02971 3 GYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----IAAL-LA-F----------GL---ALRAVLLGLAGYALS 61 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----HHHH-HH-H----------hc---cHHHHHHHHHHHHHH
Confidence 6788899999999999999988877542 221111 0 0000 00 0 00 022567788899999
Q ss_pred HHHHHHHHhccCcceehcchhhhHHHHHHHHHH--HhcCCccchhhHHHHHHHHhhhhheecCcc
Q 044658 264 YVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFF--ILHERIYPGSVVGSIIVVIGLYILLWGKSK 326 (364)
Q Consensus 264 ~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~--~l~e~~~~~~~~G~~li~~g~~l~~~~~~~ 326 (364)
+.+|.+++++.+.+.+.++..+.++...+.++. ++||++++.+++|+++|++|+++..+.+++
T Consensus 62 ~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 62 MLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999998888888885 799999999999999999999998865443
No 54
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.86 E-value=4.3e-08 Score=90.06 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHhhhc-----CCCCCCHHHHHHHHHHH
Q 044658 7 WKPIIMMVAVNLGLAAANALLKKILDGGLN--HLVIVAYRQIIATIFLAPVAYFWERK-----SRPKLTVPILCQLFFSA 79 (364)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~--p~~~~~~r~~~~~l~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~g 79 (364)
..|.++.++++++|+...++.|...+++-+ .....++-+..+.+.+.......... .....+.+.|..++..+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 469999999999999999999987653222 23334444444443333332222211 11235677888888899
Q ss_pred HHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 80 LTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
++...+++.++++++++.+++.++.+..+.|++..++++++++|+++..+ ++|..+.++|+.+...
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~------~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQ------FLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHH------HHHHHHHHHHHHHHhc
Confidence 88888999999999999999999999999999999999999999999999 9999999999998764
No 55
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.84 E-value=1.9e-08 Score=78.33 Aligned_cols=107 Identities=20% Similarity=0.415 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHH
Q 044658 218 IMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFI 297 (364)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~ 297 (364)
+++.++.+.........++..+.+.....+.+...+..|.++...++.++.+++++.+ ..++.+..++|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554332111122222244555666677666689999999999999 588899999999999999999
Q ss_pred hcCCccchhhHHHHHHHHhhhhheecCc
Q 044658 298 LHERIYPGSVVGSIIVVIGLYILLWGKS 325 (364)
Q Consensus 298 l~e~~~~~~~~G~~li~~g~~l~~~~~~ 325 (364)
++|+++..+++|++++.+|+.+..+.+.
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999987543
No 56
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.79 E-value=5.6e-08 Score=85.44 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=117.3
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCccc-ccchhhHHHHHHHHHhh
Q 044658 181 WAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWA-MKGKLEIITIIYSGVVG 259 (364)
Q Consensus 181 ~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 259 (364)
...|+++++.|-+.|+..-.+.|.+... ++.++..++.+++............+...-+. ..+++.+......+.+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~~--~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l- 81 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLEPL--PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL- 81 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH-
Confidence 4679999999999999999988877554 46889999999999888777666544222222 2344566666666664
Q ss_pred hHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCcc
Q 044658 260 SGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSK 326 (364)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~ 326 (364)
....+..|.++.++....++|.-++++|++.+++|.++++|+++..|++..++..+|+....+...+
T Consensus 82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~ 148 (293)
T COG2962 82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS 148 (293)
T ss_pred HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5678999999999999999999999999999999999999999999999999999999888765554
No 57
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.78 E-value=3.5e-08 Score=90.86 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---------CH-HHHHH
Q 044658 6 QWKPIIMMVAVNLGLAAANALLKKILDG-GLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKL---------TV-PILCQ 74 (364)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~k~~~~~-~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~---------~~-~~~~~ 74 (364)
...|.++.++++++|+...+..|...++ +.+|..++++....+.+.++|+............ .. ..+..
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 3569999999999999999999998762 3899999999999999999888754321110000 00 11111
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 75 LFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 75 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
.+..+.......+.+++.+++++++..+++...+.|+++.++++++++|+++..+ ++|..+++.|+.+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~------~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQ------VFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhH------HHHHHHHHHHHHHHHH
Confidence 2233332223344677789999999999999999999999999999999999999 9999999999999864
No 58
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.73 E-value=2.5e-07 Score=76.15 Aligned_cols=134 Identities=25% Similarity=0.317 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCC----C-------CHHH
Q 044658 9 PIIMMVAVNLGLAAANALLKKILDG------GLNHLVIVAYRQIIATIFLAPVAYFWERKSRPK----L-------TVPI 71 (364)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~k~~~~~------~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~----~-------~~~~ 71 (364)
|.++.+.+.++.+...+..|...++ ..++..+..+....+.+++.+.....+..+..+ . ..+.
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 5678999999999999999998876 578999999999999999999877655433111 0 2244
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhh
Q 044658 72 LCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTL 149 (364)
Q Consensus 72 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li 149 (364)
+..++..|++. ...+...+..++++++-..++......+.+.++++++++|+++..+ ++|+.+++.|+++-
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~------~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQ------IIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHH------HHHHHHHHHHHhee
Confidence 55666777776 8999999999999999999999999999999999999999999999 99999999998764
No 59
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=2.2e-08 Score=88.95 Aligned_cols=278 Identities=13% Similarity=0.167 Sum_probs=168.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVT 84 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (364)
+...|.++.+.+.++.|.+.++-|+...+ ... .. .+......+. .++ +.++.|++.+.
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r-~~~---~~---------------~ra~~gg~~y-l~~--~~Ww~G~ltm~ 75 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKR-AGA---SG---------------LRAGEGGYGY-LKE--PLWWAGMLTMI 75 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHH-Hhh---hc---------------ccccCCCcch-hhh--HHHHHHHHHHH
Confidence 45678888899999999999999988764 100 00 0111111111 122 45678999899
Q ss_pred HHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCccccccccc
Q 044658 85 LAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNH 164 (364)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~ 164 (364)
++...-|.|+.+.|++.++++..+..+..++++..+++||++... .+|+.++++|-.++......+... .
T Consensus 76 vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g------~lGc~l~v~Gst~iV~haP~e~~i-~--- 145 (335)
T KOG2922|consen 76 VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLG------ILGCVLCVVGSTTIVIHAPKEQEI-E--- 145 (335)
T ss_pred HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhh------hhheeEEecccEEEEEecCccccc-c---
Confidence 999999999999999999999999999999999999999999999 999999999999998633222111 0
Q ss_pred ccccccccCCCCCCCCchHHHHHHHHHH-HHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHH-------HHHHHhhc
Q 044658 165 MTNDVNTMNSSKKADDWAIGSIVLIAFT-VVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSA-------VLSLIVER 236 (364)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~G~~~~l~a~-~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 236 (364)
+. .+.. ..-...+.+.-..-- +...+-....|+. ....+.+.+.....+.+++-.. .+-.....
T Consensus 146 -t~---~el~---~~~~~~~Fliy~~~iil~~~il~~~~~p~-~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g 217 (335)
T KOG2922|consen 146 -SV---EEVW---ELATEPGFLVYVIIIILIVLILIFFYAPR-YGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSG 217 (335)
T ss_pred -cH---HHHH---HHhcCccHHHHHHHHHHHHHHHheeeccc-ccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcC
Confidence 00 0000 000011211111111 1111111111211 1111344444444444432111 11111111
Q ss_pred CCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhh-HHHHHHHHHHHhcCCccc------hhhHH
Q 044658 237 NPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLI-QIFVAIVGFFILHERIYP------GSVVG 309 (364)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~-pv~~~~~~~~~l~e~~~~------~~~~G 309 (364)
.. +. ..+..|..++.+. .+........++|++..+++.++++.+.. ..++++-+.++++|.-.. ..+.|
T Consensus 218 ~~-ql--~~~~ty~~~l~~~-~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~G 293 (335)
T KOG2922|consen 218 NN-QL--FYPLTWIFLLVVA-TCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCG 293 (335)
T ss_pred Cc-cc--ccHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 11 11 1223454444444 35667778889999999999998887764 456667778888886432 46788
Q ss_pred HHHHHHhhhhheecCcc
Q 044658 310 SIIVVIGLYILLWGKSK 326 (364)
Q Consensus 310 ~~li~~g~~l~~~~~~~ 326 (364)
...++.|+++....|.+
T Consensus 294 f~ti~~G~flL~~~kd~ 310 (335)
T KOG2922|consen 294 FVTIFLGIFLLHRTKDM 310 (335)
T ss_pred HHHhhheeeEeeeeccc
Confidence 99999999988654443
No 60
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.65 E-value=8.8e-07 Score=83.11 Aligned_cols=138 Identities=11% Similarity=0.097 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHH
Q 044658 183 IGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGL 262 (364)
Q Consensus 183 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (364)
.-..+.+.--.+...+.+..|...+..+-|..++.++++++.+................. .....|..++..|++. ..
T Consensus 49 ~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~-~~ 126 (350)
T PTZ00343 49 KLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCH-LF 126 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHH-HH
Confidence 333444444444556677888888887558999999999998765544322111111111 1224566777778754 44
Q ss_pred HHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 263 CYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 263 ~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
.+...+.++++.+++.++++..++|++++++++++++|++++.+++|.+++++|+.+...
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 566678999999999999999999999999999999999999999999999999998864
No 61
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.59 E-value=4.9e-07 Score=69.89 Aligned_cols=67 Identities=18% Similarity=0.221 Sum_probs=61.7
Q ss_pred HHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhe
Q 044658 255 SGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILL 321 (364)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~ 321 (364)
.++++.+.++.++..++++.+.+.+-.+.++.++++.+.+++++||++++.+++|..++++|+.+..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3445677899999999999999999999999999999999999999999999999999999998764
No 62
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.59 E-value=4.7e-07 Score=82.70 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHH
Q 044658 7 WKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQI----IATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTG 82 (364)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (364)
.+|+++.+++++.++......|.. +.+|...++.... .+.+++.++ + +.++ ...+.....+..|++.
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~---~--~~~~-~~~~~~~~~~~~Gi~~ 221 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH---I--LAKP-LKKYAILLNILPGLMW 221 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH---h--cccc-hHHHHHHHHHHHHHHH
Confidence 789999999999999999999976 3888888555554 333333322 1 1122 2344455556689885
Q ss_pred HHHHHHHHHHhcc-ccCcceeehcccchhHHHHHHhhhhccccccccccccccch----hHHHHHHhhhhhhee
Q 044658 83 VTLAQYFFLLGFE-YTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKV----LGAIVCIGGALTLTL 151 (364)
Q Consensus 83 ~~~~~~~~~~al~-~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~----~gi~~~~~Gv~li~~ 151 (364)
.+++.+|+.+.+ +.+++.++++.+..|+...+.+++++||+.++++ + +|..+.+.|+.++..
T Consensus 222 -~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~------~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 222 -GIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKRE------MIAISVGIILIIIAANILGI 288 (290)
T ss_pred -HHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcce------eehhHHHHHHHHHHHHHHhc
Confidence 999999999999 9999999999999999999999999999999999 9 999999999998753
No 63
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.51 E-value=1.8e-06 Score=78.60 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=107.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 044658 7 WKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVA-YRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTL 85 (364)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~-~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (364)
..|.++.++++++|+...+..|... + .++..... +.......+..+.. ..... .+...+.+......|++....
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFF--LSGFG-APILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHH--hcccc-ccCCHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999876 3 66666666 34332222222222 11111 345678888888999998567
Q ss_pred HHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 86 AQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
++.++++++++.+++.++++..+.|++..++++++++|+++..+ ++|+.+.+.|+.+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~------~~G~~li~~g~~l~~~ 287 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQ------LLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHH------HHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999 9999999999999864
No 64
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.46 E-value=4.2e-07 Score=70.25 Aligned_cols=67 Identities=22% Similarity=0.276 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhe
Q 044658 78 SALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLT 150 (364)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~ 150 (364)
.++++..+++.++..+++..|.+.+..+.++.++++.+++++++|||++.++ ++|+.++++|+.++.
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~------~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRH------WCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 3445568899999999999999999999889999999999999999999999 999999999999885
No 65
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.39 E-value=3.1e-06 Score=67.09 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 044658 8 KPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQ 87 (364)
Q Consensus 8 ~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 87 (364)
.++++++++.++-+...++.|...++ .+........ . ... .... ..+ ..+..|+....+++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~-~g~~~~~~~~--~------~~~--~~~~-------~p~-~~i~lgl~~~~la~ 62 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSR-LPLLSHAWDF--I------AAL--LAFG-------LAL-RAVLLGLAGYALSM 62 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhh-CCCccchhHH--H------HHH--HHHh-------ccH-HHHHHHHHHHHHHH
Confidence 47888999999999999999999874 4433321110 0 000 0000 001 13566777779999
Q ss_pred HHHHHhccccCcceeehcccchhHHHHHHhhh--hccccccccccccccchhHHHHHHhhhhhhee
Q 044658 88 YFFLLGFEYTTAAFSCAFINIVPVSTFLLALP--FRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 88 ~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~--~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
.++.++++..+++.+..+.+..+.++.+.++. +++|+++..+ ++|+.++++|++++..
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~------~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKK------TLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhcc
Confidence 99999999999999999999998888888885 7999999999 9999999999999974
No 66
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.30 E-value=5.3e-06 Score=71.40 Aligned_cols=137 Identities=15% Similarity=0.082 Sum_probs=116.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 044658 6 QWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTL 85 (364)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (364)
+..|..+.+.+..+|+.+-+..|..-+. .+.-.-+.+-+.++.++.+|+....... .-.++......+..++++..+
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~--~l~~p~ll~laLgvavlSSal 222 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGP--ALFSPSLLPLALGVAVLSSAL 222 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcch--hhcChHHHHHHHHHHHHhccc
Confidence 5678999999999999999999988753 6666777888899999999987632222 224566677778889999899
Q ss_pred HHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 86 AQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 86 ~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
.+.+...+++..|....+.+.++.|.+.++.++++++|+++..| |.++...+.+..-.++
T Consensus 223 PYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~q------wlaI~~ViaAsaG~~l 282 (292)
T COG5006 223 PYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQ------WLAIAAVIAASAGSTL 282 (292)
T ss_pred chHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHH------HHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999 9999999888876554
No 67
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.30 E-value=2.6e-05 Score=71.92 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=113.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--CCHHHHHHHHHHHHH
Q 044658 4 CRQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPK--LTVPILCQLFFSALT 81 (364)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 81 (364)
.+..+|-++++.+++++|.++++-+....+ .++.++...--+.+.++..+.....++++..+ .+.+....++..+++
T Consensus 164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~ 242 (334)
T PF06027_consen 164 SNPILGDLLALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC 242 (334)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH
Confidence 456889999999999999999999999884 88888888777888888777766555554433 344444443333433
Q ss_pred HHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccC
Q 044658 82 GVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKG 154 (364)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~ 154 (364)
.+..+.+.-..+++.++....+-.-+..++..+++.+++++++++.. ++|..+.++|+++....+.
T Consensus 243 -lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly------~~af~lIiiG~vvy~~~~~ 308 (334)
T PF06027_consen 243 -LFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLY------ILAFALIIIGFVVYNLAES 308 (334)
T ss_pred -HHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHH------HHHHHHHHHHhheEEccCC
Confidence 36666677788899999888887788899999999999999999999 9999999999999986443
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.09 E-value=5.1e-05 Score=59.03 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=59.5
Q ss_pred HHhhhHHHHHHHHHHHhccCcceehcc-hhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCc
Q 044658 256 GVVGSGLCYVGMAWCVEQRGPVFTSAF-TPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKS 325 (364)
Q Consensus 256 ~~~~~~~~~~~~~~a~~~~~~~~~s~~-~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~ 325 (364)
.+++.+++++++.+++|+.+.+.+=.+ ..+..+.+.+.+++++||++++.+++|+.+|++|++......+
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 344567899999999999998776555 4688899999999999999999999999999999998865443
No 69
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.95 E-value=0.00018 Score=66.20 Aligned_cols=127 Identities=18% Similarity=0.116 Sum_probs=96.0
Q ss_pred HHhHHHHHHHHhccCC-C--chhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHHHHHHHHHH
Q 044658 195 WSSWFLIQARIGKKYP-C--KYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAWCV 271 (364)
Q Consensus 195 ~a~~~i~~k~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 271 (364)
+..+.+.++++.++.. . +..+++.++....+...+....... .......+...+..++ ....+..+-+.++
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~al 85 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-----PKSRKIPLKKYAILSF-LFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-----cCCCcChHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3445566777766532 3 6788888888888777766555431 1111223334444554 4677888899999
Q ss_pred hccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCccc
Q 044658 272 EQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSKE 327 (364)
Q Consensus 272 ~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 327 (364)
++++.....+.....|+..++++.+++|++.+..++++.+++.+|+.+....+.++
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 99999999999999999999999999999999999999999999999998765544
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.93 E-value=0.00016 Score=55.49 Aligned_cols=68 Identities=7% Similarity=0.168 Sum_probs=58.1
Q ss_pred HhhhHHHHHHHHHHHhccCcceehcc-hhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecC
Q 044658 257 VVGSGLCYVGMAWCVEQRGPVFTSAF-TPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGK 324 (364)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~~~~s~~-~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~ 324 (364)
+++..+++.++..++++.+.+.+=.+ .-+..+.+.+.++++++|++++.+++|+.++++|+++.+...
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34567899999999999998766444 557888999999999999999999999999999999986543
No 71
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.92 E-value=0.0019 Score=58.76 Aligned_cols=301 Identities=14% Similarity=0.111 Sum_probs=175.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH-hhhcCC----CCCCHHHHHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYF-WERKSR----PKLTVPILCQLFFSA 79 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~-~~~~~~----~~~~~~~~~~~~~~g 79 (364)
.-..|+++..++.++-|+..+..|+..+ .+-...=.+..+++.++ .|+... ..-+.. ...+...+....+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~--WsWEs~Wlv~gi~swli-~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKG--WSWESYWLVQGIFSWLI-VPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCC--ccHHHHHHHHHHHHHHH-HHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 4467899999999999999999998754 44333333334444443 343322 111111 123446677778889
Q ss_pred HHHHHHHHHHHHHhccccCccee-ehcccchhHHHHHHhhhhcccccc-ccccccccchhHHHHHHhhhhhheeccCCcc
Q 044658 80 LTGVTLAQYFFLLGFEYTTAAFS-CAFINIVPVSTFLLALPFRLEKLN-MKSLDGRSKVLGAIVCIGGALTLTLYKGKPF 157 (364)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~-~~l~~~~pi~~~ll~~~~l~e~~~-~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~ 157 (364)
++- .++...|-.+++|+..+.. ++...+.-++..++-.++.++--. ..+.-++.-++|++++++|+.+.........
T Consensus 81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 885 8999999999999999877 444556666666665555332100 0011123348999999999999974321111
Q ss_pred cccccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhc------cCC-Cch----hHHHHHHHHHHHH
Q 044658 158 YLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGK------KYP-CKY----SSTAIMALFGAIQ 226 (364)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~------~~~-~~~----~~~~~~~~~~~~~ 226 (364)
+ ...++.++.+..+|.+.++++++..|.+++-...-.. ... +|. ......+.-+.+.
T Consensus 160 ~------------~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~t 227 (344)
T PF06379_consen 160 K------------ELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFIT 227 (344)
T ss_pred h------------hhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHH
Confidence 1 0112234567789999999999999999886543211 000 111 1222334444455
Q ss_pred HHHHHHHhhc---CCC---cccccchh---hHHHHHHHHHhhhHHHHHHHHHHHhccCc----ceehcchhhhHHHHHHH
Q 044658 227 SAVLSLIVER---NPA---GWAMKGKL---EIITIIYSGVVGSGLCYVGMAWCVEQRGP----VFTSAFTPLIQIFVAIV 293 (364)
Q Consensus 227 ~~~~~~~~~~---~~~---~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~a~~~~~~----~~~s~~~~l~pv~~~~~ 293 (364)
-..+++.... +.. ++....+. ....-+..|. .=..++++|..+-.+.+. +--.+.+.+..+++-++
T Consensus 228 N~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvw 306 (344)
T PF06379_consen 228 NLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVW 306 (344)
T ss_pred HHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHH
Confidence 5555554322 211 11111111 1111122222 234466777777777663 34456788888999999
Q ss_pred HHHHhcCCc------cchhhHHHHHHHHhhhhheec
Q 044658 294 GFFILHERI------YPGSVVGSIIVVIGLYILLWG 323 (364)
Q Consensus 294 ~~~~l~e~~------~~~~~~G~~li~~g~~l~~~~ 323 (364)
+. .++|.- -..-++|+++++.++.+..+.
T Consensus 307 Gl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~G 341 (344)
T PF06379_consen 307 GL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGYG 341 (344)
T ss_pred HH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhcc
Confidence 97 677742 234588988888888776553
No 72
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.82 E-value=6.4e-06 Score=71.42 Aligned_cols=136 Identities=13% Similarity=0.154 Sum_probs=100.2
Q ss_pred CchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhh
Q 044658 180 DWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVG 259 (364)
Q Consensus 180 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 259 (364)
....|.++.-++ .++...++..++.... +|......++++-.+...|..+...... +.......| ++.=|+.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~v--~gp~g~R~~--LiLRg~m- 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQPV--IGPEGKRKW--LILRGFM- 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeeee--ecCCCcEEE--EEeehhh-
Confidence 346788888888 7777788878777655 4666777776666655555444332221 111112223 2333443
Q ss_pred hHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheec
Q 044658 260 SGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWG 323 (364)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~ 323 (364)
...+..+.+++.++.+-+.+.++....|+++.+++|.+++|+.+..+.+|..+.+.|++++.+.
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 3467788899999999999999999999999999999999999999999999999999998753
No 73
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.81 E-value=0.00044 Score=55.57 Aligned_cols=132 Identities=13% Similarity=0.124 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHH
Q 044658 184 GSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLC 263 (364)
Q Consensus 184 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (364)
..+++++++.+-++...++.++.++..+|.....+.+..+.+.+.......+.. .........|+... |.+.....
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l--GG~lG~~~ 77 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL--GGLLGVFF 77 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc--cHHHHHHH
Confidence 357889999999999999999999877789999999999999988888777653 22222223344322 33445667
Q ss_pred HHHHHHHHhccCcceehcch-hhhHHHHHHHHHH----HhcCCccchhhHHHHHHHHhhhh
Q 044658 264 YVGMAWCVEQRGPVFTSAFT-PLIQIFVAIVGFF----ILHERIYPGSVVGSIIVVIGLYI 319 (364)
Q Consensus 264 ~~~~~~a~~~~~~~~~s~~~-~l~pv~~~~~~~~----~l~e~~~~~~~~G~~li~~g~~l 319 (364)
..+....+++.+++.+..+. .-|.+.+++++.+ .-++++++.+++|.+++++|+.+
T Consensus 78 V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 78 VLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 77788889999987766654 4456667777775 24577899999999999999864
No 74
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.79 E-value=0.00012 Score=66.85 Aligned_cols=120 Identities=15% Similarity=0.229 Sum_probs=88.3
Q ss_pred CCchHHHHHHHHHHHHHHhHHHHHHHHhccCCC-chhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHH
Q 044658 179 DDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPC-KYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGV 257 (364)
Q Consensus 179 ~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (364)
.+...|..+++.++++.+....++|+...+.+. .... .....+......|+. |.
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~---------------------~~~~~~~l~~~~W~~----G~ 57 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRA---------------------GSGGRSYLRRPLWWI----GL 57 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---------------------cchhhHHHhhHHHHH----HH
Confidence 346889999999999999999999987655321 0100 000000001122332 33
Q ss_pred hhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheec
Q 044658 258 VGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWG 323 (364)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~ 323 (364)
+...++..+...+....+++.++++..+..++..+++..++||+++...++|+.+++.|..+....
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 334556677778899999999999999999999999999999999999999999999999877543
No 75
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.70 E-value=0.00049 Score=61.15 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=89.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHH
Q 044658 4 CRQWKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGV 83 (364)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 83 (364)
++..++++.++++.+.+..+.++.|.. +.+|....+-. .++.++-..++....+ .+...|...+-++.|++-
T Consensus 134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~~~---~~~~~k~~~~nil~G~~w- 205 (269)
T PF06800_consen 134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLFSK---KPFFEKKSWKNILTGLIW- 205 (269)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhccc---ccccccchHHhhHHHHHH-
Confidence 345789999999999999999998875 57887766644 4444433333322111 122234445557788886
Q ss_pred HHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccc
Q 044658 84 TLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKS 129 (364)
Q Consensus 84 ~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~ 129 (364)
..++.+++.+.+....+.+-.+.++.+++..+.+.+++||+=++++
T Consensus 206 ~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke 251 (269)
T PF06800_consen 206 GIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKE 251 (269)
T ss_pred HHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhh
Confidence 9999999999999999999999999999999999999999988776
No 76
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.0013 Score=52.88 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhH
Q 044658 182 AIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSG 261 (364)
Q Consensus 182 ~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 261 (364)
....+.++.++.+-.+..-.+.++.+..++|.......+.++.+.+..+.+..++. ..+....+..|+.. .-|.+ ..
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pwW~~-~GG~l-Ga 80 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPWWAW-IGGLL-GA 80 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCchHHH-Hccch-hh
Confidence 56788999999999999999999999887899999999999999888888775442 22222222334432 22222 22
Q ss_pred HHHHHHHHHHhccCc-ceehcchhhhHHHHHHHHHHHhc----CCccchhhHHHHHHHHhhhhheec
Q 044658 262 LCYVGMAWCVEQRGP-VFTSAFTPLIQIFVAIVGFFILH----ERIYPGSVVGSIIVVIGLYILLWG 323 (364)
Q Consensus 262 ~~~~~~~~a~~~~~~-~~~s~~~~l~pv~~~~~~~~~l~----e~~~~~~~~G~~li~~g~~l~~~~ 323 (364)
+-.+.-.....+.++ ..+.....-+.+.+++.+.+=+. .++++.+++|++++++|+++..+.
T Consensus 81 ~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 81 IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 222333444555554 44555566677777777765332 568899999999999996666544
No 77
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.60 E-value=0.00023 Score=54.55 Aligned_cols=110 Identities=15% Similarity=0.164 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044658 14 VAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQYFFLLG 93 (364)
Q Consensus 14 ~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a 93 (364)
++..++||.++++.|.... +.++..-.. |..-.... + .+.|.+. +.-+++ -.+...|++.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~-----L-----------l~n~~y~-ipf~lN-q~GSv~f~~~ 61 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF-----L-----------LLNPKYI-IPFLLN-QSGSVLFFLL 61 (113)
T ss_pred eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH-----H-----------HHhHHHH-HHHHHH-HHHHHHHHHH
Confidence 3567899999999999987 354333221 32111111 0 1112222 222333 6778889999
Q ss_pred ccccCcceeehcc-cchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhh
Q 044658 94 FEYTTAAFSCAFI-NIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTL 149 (364)
Q Consensus 94 l~~~~~~~~~~l~-~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li 149 (364)
+...+.+.+.++. ++.=++|++.++++.+|..+++. ++|+.+.+.|+.+.
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~------~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRT------WLGMALILAGVALC 112 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhH------HHHHHHHHcCeeee
Confidence 9999999999995 68999999999999888889999 99999999999764
No 78
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.57 E-value=0.0015 Score=49.97 Aligned_cols=64 Identities=8% Similarity=0.194 Sum_probs=54.9
Q ss_pred hhhHHHHHHHHHHHhccCccee-hcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhe
Q 044658 258 VGSGLCYVGMAWCVEQRGPVFT-SAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILL 321 (364)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~ 321 (364)
++..+++++...++|+++.+.+ ++-.-+..+.+.+.+++++||++++.+++|+.+++.|+...+
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3467899999999999987654 455567788899999999999999999999999999998864
No 79
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.56 E-value=0.00054 Score=52.37 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhccccCcceeehc-ccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhe
Q 044658 83 VTLAQYFFLLGFEYTTAAFSCAF-INIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLT 150 (364)
Q Consensus 83 ~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~ 150 (364)
..+++++...+++++|.+.+-.+ .....+.+.+.++++++|+++..+ ++|+.+.+.|+..+-
T Consensus 45 ~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~------~~gi~lIi~GVi~lk 107 (109)
T PRK10650 45 VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKG------WIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHHHhc
Confidence 47899999999999999998544 558889999999999999999999 999999999999873
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.53 E-value=0.0012 Score=50.23 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=56.6
Q ss_pred HhhhHHHHHHHHHHHhccCccee-hcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 257 VVGSGLCYVGMAWCVEQRGPVFT-SAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
+++...++++...++|+.+.+.+ ++-.-+..+.+.+.+++++||++++.+++|+.++++|+...+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34567899999999999987554 5556688899999999999999999999999999999998754
No 81
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00037 Score=52.44 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHhccCcce-ehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecC
Q 044658 259 GSGLCYVGMAWCVEQRGPVF-TSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGK 324 (364)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~-~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~ 324 (364)
+..++|.+...++|+++.+. .++-.-+-.+.+.+.++++++|+.++.+++|..++++|+...+...
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 45689999999999998654 4666778888999999999999999999999999999999887643
No 82
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.51 E-value=0.0005 Score=62.79 Aligned_cols=139 Identities=21% Similarity=0.208 Sum_probs=113.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHh---cCCChHHHHHHHHHHHHHHHH-HHHHHhhhcCC----C-CCCHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILD---GGLNHLVIVAYRQIIATIFLA-PVAYFWERKSR----P-KLTVPILCQL 75 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~---~~~~p~~~~~~r~~~~~l~l~-~~~~~~~~~~~----~-~~~~~~~~~~ 75 (364)
-...|....+.+.+..+.-.++.|..+. ++.+++....+..-++.+.++ |+....+.... . ..+...+..+
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILL 239 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHH
Confidence 3578999999999999999999999993 358899999998888888888 87765444332 1 2333433333
Q ss_pred HHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 76 FFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 76 ~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
+ .+++. .+.+...|..+..+++-.-++...+--+++...+++++++++++.+ ..|..++++|+.+-..
T Consensus 240 ~-~sv~~-f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n------~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 240 L-NSVLA-FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLN------ALGYAIAILGVFLYSR 307 (316)
T ss_pred H-HHHHH-HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhh------HHHHHHHHHHHHHHHH
Confidence 3 34776 7888899999999999999999988888888999999999999999 9999999999998863
No 83
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=97.41 E-value=0.0015 Score=59.69 Aligned_cols=143 Identities=11% Similarity=0.163 Sum_probs=112.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCHHHHHHHHH
Q 044658 4 CRQWKPIIMMVAVNLGLAAANALLKKILDGG---LNHLVIVAYRQIIATIFLAPVAYFWERKSR---PKLTVPILCQLFF 77 (364)
Q Consensus 4 ~~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~---~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (364)
.+...|-++.+++++++|...++.|.-.+++ .+--.+-.+--++..++++|..+....-.. .-.+..+...++.
T Consensus 243 ~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~ 322 (416)
T KOG2765|consen 243 SRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVF 322 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeH
Confidence 3557899999999999999999999988743 443333444446667777765544333222 2223455556677
Q ss_pred HHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheec
Q 044658 78 SALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLY 152 (364)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~ 152 (364)
.++++.+++.++|..|.-.+++-.+++-..++....++.-.++.+.++++.. ++|.+..++|.+++...
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~------iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALY------IIGSIPIFVGFVIVNIS 391 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHH------HHHHHHHHHHHhheecc
Confidence 8888889999999999999999999999888877889999999999999999 99999999999999753
No 84
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.37 E-value=0.00029 Score=54.86 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhccccCcceeehc-ccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 79 ALTGVTLAQYFFLLGFEYTTAAFSCAF-INIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 79 g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
.+....++++++..++++.|.+.+..+ ....-+.+.++++++++|+++..+ ++|+.++++|+..+-.
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~------~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMK------IAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHhhc
Confidence 333458899999999999999999666 468999999999999999999999 9999999999999864
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.36 E-value=0.0014 Score=48.81 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHhccCcceehc-chhhhHHHHHHHHHHHhcCCccchhhHHHHHH
Q 044658 258 VGSGLCYVGMAWCVEQRGPVFTSA-FTPLIQIFVAIVGFFILHERIYPGSVVGSIIV 313 (364)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~s~-~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li 313 (364)
.+...+++++.+++|+.+.+.+=. ...+..+...+.+.+++||++|+.+++|+.+|
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 356789999999999999888844 45689999999999999999999999999875
No 86
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.36 E-value=0.0024 Score=51.30 Aligned_cols=130 Identities=16% Similarity=0.158 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044658 10 IIMMVAVNLGLAAANALLKKILDGGLN-HLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQY 88 (364)
Q Consensus 10 ~l~~~l~~~~~~~~~~~~k~~~~~~~~-p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (364)
+++.+++..+-+....+.....++ .+ |..-+++.+..+.+++..+....+++.....+..+|. .+.-|+++ ...-.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w-~~lGG~lG-~~~V~ 79 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWW-AYLGGLLG-VFFVL 79 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChH-HhccHHHH-HHHHH
Confidence 456677777788887777777764 55 9999999999999999888776655433323223333 34478887 88888
Q ss_pred HHHHhccccCcceeehccc-chhHHHHHHhhh----hccccccccccccccchhHHHHHHhhhhh
Q 044658 89 FFLLGFEYTTAAFSCAFIN-IVPVSTFLLALP----FRLEKLNMKSLDGRSKVLGAIVCIGGALT 148 (364)
Q Consensus 89 ~~~~al~~~~~~~~~~l~~-~~pi~~~ll~~~----~l~e~~~~~~~~~~~~~~gi~~~~~Gv~l 148 (364)
+..+....++++.+..+.- -+-+...++..+ .-+++++..+ ++|+.+.++|+.+
T Consensus 80 ~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r------~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 80 SNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRR------ILGLALMIAGVIL 138 (138)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHH------HHHHHHHHHHHhC
Confidence 8999999999988766654 455555666664 4678899999 9999999999864
No 87
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.00034 Score=52.65 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhccccCccee-ehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 81 TGVTLAQYFFLLGFEYTTAAFS-CAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 81 ~~~~~~~~~~~~al~~~~~~~~-~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
.+..+++.++..++++.|.+.+ ++....-.+.+.+.++++++|+++..+ ++|+.+.++|+..+-.
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~------~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIK------LLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHH------HHHHHHHHHHHHHhhh
Confidence 3357899999999999999998 555669999999999999999999999 9999999999998853
No 88
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.33 E-value=0.00048 Score=52.90 Aligned_cols=66 Identities=17% Similarity=0.313 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhccccCcceeehc-ccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 80 LTGVTLAQYFFLLGFEYTTAAFSCAF-INIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
+.+..+++.++..++++.|.+.+..+ ....-+.+.++++++++|+++..+ ++|+.+.++|+..+..
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~------~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 34457888999999999999999666 558889999999999999999999 9999999999999964
No 89
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.28 E-value=0.00053 Score=52.11 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhccccCcceeehc-ccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhe
Q 044658 81 TGVTLAQYFFLLGFEYTTAAFSCAF-INIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLT 150 (364)
Q Consensus 81 ~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~ 150 (364)
.+...++++...+++..|.+.+-.+ .....+.+.++++++++|++++.+ ++|+.+.+.|+..+.
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~------~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPAR------LLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHhhh
Confidence 3348899999999999999998544 559999999999999999999999 999999999999885
No 90
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.24 E-value=0.0012 Score=58.60 Aligned_cols=80 Identities=10% Similarity=0.172 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCcc
Q 044658 247 LEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSK 326 (364)
Q Consensus 247 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~ 326 (364)
+..+.+..-+++ ..+.+.+.+.++++.+|+...++..+..+++.++++++++++++..||++..+.++|+.+.......
T Consensus 15 ~~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 15 KDTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 344555555653 6788899999999999999999999999999999999999999999999999999999998876554
Q ss_pred c
Q 044658 327 E 327 (364)
Q Consensus 327 ~ 327 (364)
.
T Consensus 94 ~ 94 (244)
T PF04142_consen 94 S 94 (244)
T ss_pred c
Confidence 4
No 91
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.77 E-value=0.005 Score=54.52 Aligned_cols=132 Identities=14% Similarity=0.038 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHH
Q 044658 184 GSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLC 263 (364)
Q Consensus 184 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (364)
|.+.+++|+++++...+=.|+.... |++...+++.....+......+..+. ..+ .....+|...-..+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~--p~f--------~p~amlgG~lW~~g 68 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGF--PPF--------YPWAMLGGALWATG 68 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCC--Ccc--------eeHHHhhhhhhhcC
Confidence 5678899999999999988877644 56655555555554444444443321 111 11222232234456
Q ss_pred HHHHHHHHhccCcceehcc-hhhhHHHHHHHHHH-HhcCCc-----cchhhHHHHHHHHhhhhheecCccc
Q 044658 264 YVGMAWCVEQRGPVFTSAF-TPLIQIFVAIVGFF-ILHERI-----YPGSVVGSIIVVIGLYILLWGKSKE 327 (364)
Q Consensus 264 ~~~~~~a~~~~~~~~~s~~-~~l~pv~~~~~~~~-~l~e~~-----~~~~~~G~~li~~g~~l~~~~~~~~ 327 (364)
+.+-.-.+|.++-...-.+ ...+.+.+-..+.+ +||++. .+..++|++++++|..++..-|.+.
T Consensus 69 N~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 69 NILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred ceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 6667777777775554333 33466666666654 455433 3568999999999999987766554
No 92
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.70 E-value=0.019 Score=44.10 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=74.7
Q ss_pred HHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHHHHHHHH
Q 044658 190 AFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLCYVGMAW 269 (364)
Q Consensus 190 ~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 269 (364)
+-+++|+..+-+.||..+..++...- . +..--. .. ++. +++.+. ..+....+-..|++
T Consensus 3 ~Vg~~WG~Tnpfik~g~~~~~~~~~~-~-~~~~~~-~~----Ll~----------n~~y~i-----pf~lNq~GSv~f~~ 60 (113)
T PF10639_consen 3 LVGILWGCTNPFIKRGSSGLEKVKAS-L-QLLQEI-KF----LLL----------NPKYII-----PFLLNQSGSVLFFL 60 (113)
T ss_pred eehHHhcCchHHHHHHHhhcCCccch-H-HHHHHH-HH----HHH----------hHHHHH-----HHHHHHHHHHHHHH
Confidence 45789999999999988775522211 1 111111 11 110 111222 22335566778889
Q ss_pred HHhccCcceehcc-hhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhh
Q 044658 270 CVEQRGPVFTSAF-TPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYIL 320 (364)
Q Consensus 270 a~~~~~~~~~s~~-~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~ 320 (364)
.+.+.+-+.+.++ +.+.-+++++.++++.+|..++..++|++++++|+.+.
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 9999999999998 49999999999987777777888999999999998753
No 93
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.43 E-value=0.033 Score=49.40 Aligned_cols=184 Identities=10% Similarity=-0.002 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044658 9 PIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQY 88 (364)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (364)
|++..+++.+++|+.++-.|..-. .|++.+-++.+....+.-+.+.... ..+ +.+.+.++.|.+- +.++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~--gDg~~fQw~~~~~i~~~g~~v~~~~---~~p----~f~p~amlgG~lW-~~gN~ 70 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT--GDGFFFQWVMCSGIFLVGLVVNLIL---GFP----PFYPWAMLGGALW-ATGNI 70 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC--CCcHHHHHHHHHHHHHHHHHHHHhc---CCC----cceeHHHhhhhhh-hcCce
Confidence 567889999999999999996643 5777777766655555444444332 222 2244556667775 88888
Q ss_pred HHHHhccccCcceeehcccc-hhHHHHHHhhh-hccccc-----cccccccccchhHHHHHHhhhhhheeccCCccc---
Q 044658 89 FFLLGFEYTTAAFSCAFINI-VPVSTFLLALP-FRLEKL-----NMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFY--- 158 (364)
Q Consensus 89 ~~~~al~~~~~~~~~~l~~~-~pi~~~ll~~~-~l~e~~-----~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~--- 158 (364)
+-.-.++.+..+....+-++ .-+..-..+++ +++++. .... .+|+.++++|..+...-+.+...
T Consensus 71 ~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln------~~G~~l~~~~~~~f~fik~~~~~~~~ 144 (254)
T PF07857_consen 71 LVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLN------YIGVALVLVSGIIFSFIKSEEKEPKK 144 (254)
T ss_pred eehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHH------HHHHHHHHHHHHheeeecCCCCCccc
Confidence 88999999999988888764 44444454544 343322 2334 77888888888877653322210
Q ss_pred ------cccc-cccccccc--ccCCCC-----CCCCchHHHHHHHHHHHHHHhHHHHHHHHhcc
Q 044658 159 ------LGAT-NHMTNDVN--TMNSSK-----KADDWAIGSIVLIAFTVVWSSWFLIQARIGKK 208 (364)
Q Consensus 159 ------~~~~-~~~~~~~~--~~~~~~-----~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~ 208 (364)
...+ ..+..+.. +.+.+. ..+++..|..+++++++.|+...+=..+..++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 145 SSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred cccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 0000 01111110 111111 11257789999999999999988877776655
No 94
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.31 E-value=0.0051 Score=45.83 Aligned_cols=55 Identities=24% Similarity=0.281 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhccccCcceeehc-ccchhHHHHHHhhhhccccccccccccccchhHHHHH
Q 044658 82 GVTLAQYFFLLGFEYTTAAFSCAF-INIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVC 142 (364)
Q Consensus 82 ~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~ 142 (364)
...++..++..++++.|.+.+-.+ ..+..+.+.+.+.++++|++|..+ +.|+.+.
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~------~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSK------WLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HhheeeC
Confidence 348888999999999999999655 569999999999999999999999 9998753
No 95
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.23 E-value=0.17 Score=47.07 Aligned_cols=145 Identities=15% Similarity=0.092 Sum_probs=92.0
Q ss_pred CchHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHHHH-HHHhh-h-cCC-----CC
Q 044658 5 RQWKPIIMMVAVNLGLAAAN-------ALLKKILDGGLNHLVIVAYRQI---IATIFLAPV-AYFWE-R-KSR-----PK 66 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~-------~~~k~~~~~~~~p~~~~~~r~~---~~~l~l~~~-~~~~~-~-~~~-----~~ 66 (364)
+..||++.++++.+..+... +..+.....+.++.....-.+. ++.++.-.+ ..+.. + ++. .+
T Consensus 171 ~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~ 250 (345)
T PRK13499 171 NLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS 250 (345)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence 45889999999999999988 5665544445665554444443 444433322 22211 1 111 11
Q ss_pred CC----HHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeeh---cc-cchhHHHHHHhhhhccccccccccccccchhH
Q 044658 67 LT----VPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCA---FI-NIVPVSTFLLALPFRLEKLNMKSLDGRSKVLG 138 (364)
Q Consensus 67 ~~----~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~---l~-~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~g 138 (364)
.+ .+......+.|++- .+.+.++..+-...+.+...+ +. ++..++..+-+. ++||+=+..+++-+-.++|
T Consensus 251 ~~~~~~~~n~l~~~l~G~~W-~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 251 LAKPLLITNVLLSALAGVMW-YLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG 328 (345)
T ss_pred ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence 12 34444456777775 788888888888776665555 55 555566666676 5899988545455666889
Q ss_pred HHHHHhhhhhhee
Q 044658 139 AIVCIGGALTLTL 151 (364)
Q Consensus 139 i~~~~~Gv~li~~ 151 (364)
+++.++|..++..
T Consensus 329 ~vliI~g~~lig~ 341 (345)
T PRK13499 329 CVVIILAANIVGL 341 (345)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988864
No 96
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.87 E-value=0.38 Score=44.26 Aligned_cols=141 Identities=11% Similarity=0.072 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCC---CchhHHHHHHHHHHHHHHHHHHHhhcC-----CCcc---cccchhhHHH
Q 044658 183 IGSIVLIAFTVVWSSWFLIQARIGKKYP---CKYSSTAIMALFGAIQSAVLSLIVERN-----PAGW---AMKGKLEIIT 251 (364)
Q Consensus 183 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~ 251 (364)
.-.+..+...+-++......|+..+..+ .|.+..+..-+.-.++.....+..++. .... ....+.+...
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 3444555555566666666666554432 244444444444444444444433211 0111 1111112223
Q ss_pred HHHHHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecC
Q 044658 252 IIYSGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGK 324 (364)
Q Consensus 252 l~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~ 324 (364)
+..-+. ...+.+.+++.+..+.+|++..+...+..+.+.++..+++++++++.||...++.+.|+.+.+...
T Consensus 95 ~~vPa~-iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 95 VSVPAL-IYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHHHHH-HHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 333333 356677799999999999999999999999999999999999999999999999999999998443
No 97
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.85 E-value=0.0066 Score=52.52 Aligned_cols=134 Identities=18% Similarity=0.238 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhhhHHH
Q 044658 184 GSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVGSGLC 263 (364)
Q Consensus 184 G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (364)
..+.+++=++.|+..-....+... .|.+.+.-+.+-+.+..+...++..+ .. +...+..-+..|. .=.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT~GALifaiiv~~~~~p---~~---T~~~~iv~~isG~-~Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTTLGALIFAIIVFLFVSP---EL---TLTIFIVGFISGA-FWSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhccHHHHHHHHHHheeecC---cc---chhhHHHHHHhhh-Hhhhh
Confidence 567889999999988776665543 35555555555444444444333211 11 1223333344444 34578
Q ss_pred HHHHHHHHhccCcceehcchh-hhHHHHHHHHHHHhcCCccchhh----HHHHHHHHhhhhheecCccc
Q 044658 264 YVGMAWCVEQRGPVFTSAFTP-LIQIFVAIVGFFILHERIYPGSV----VGSIIVVIGLYILLWGKSKE 327 (364)
Q Consensus 264 ~~~~~~a~~~~~~~~~s~~~~-l~pv~~~~~~~~~l~e~~~~~~~----~G~~li~~g~~l~~~~~~~~ 327 (364)
+...+++++..+.+++.++.. .+-+-+.+++++.+||..+..++ +..++++.|+++..++++.+
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~n 141 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNN 141 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccc
Confidence 889999999999999998866 45566788999999999987643 34667778888887766543
No 98
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.31 E-value=0.11 Score=46.50 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=109.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----CCHHHHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDG-GLNHLVIVAYRQIIATIFLAPVAYFWERKSRPK-----LTVPILCQLFFS 78 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~-~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 78 (364)
+...|+.+++...++-|..+..-+..+.. .+++..+.+.--+..++.-....+. ....++. ..++.+.-++..
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~-qg~~~~av~F~~~hp~~~~Di~l~ 247 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLIL-QGHLLPAVSFIKEHPDVAFDILLY 247 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhc-CCCCchHHHHHHcChhHHHHHHHH
Confidence 56789999999999889888887777763 4778888888777777766655432 2222221 235666778888
Q ss_pred HHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 79 ALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 79 g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
++++ +.++.+-++-++.-.+-..+.+..+--++..+++.+.++.+++..| |.|+.+.+.|+.+=.+
T Consensus 248 s~~g-avGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q------~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 248 STCG-AVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQ------WLGVLIVFGGIFLEIL 313 (327)
T ss_pred HHhh-hhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhh------ccCeeeehHHHHHHHH
Confidence 9998 9999999999988777777788888999999999999999999999 9999999999887654
No 99
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.30 E-value=0.014 Score=48.69 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCccc
Q 044658 262 LCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSKE 327 (364)
Q Consensus 262 ~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 327 (364)
.+++.|..++++++++.++.+..-+..+..+++++.+|+++...+++..++.+.|+++..+.....
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 356789999999999999999999999999999999999999999999999999999888765543
No 100
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=0.23 Score=40.09 Aligned_cols=137 Identities=14% Similarity=0.089 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 044658 7 WKPIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLA 86 (364)
Q Consensus 7 ~~~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 86 (364)
...+++.+++..+-.....+.-......-+|+.-.+..+..+++++..+.+...++......++.-.+.+.-|+++ ...
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lG-a~~ 82 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLG-AIF 82 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchh-hhh
Confidence 4455666777777777777666666643459999999999999999888776333222221122223344556665 555
Q ss_pred HHHHHHhccccCcceeehc-ccchhHHHHHHhhhh----ccccccccccccccchhHHHHHHhhhhhhe
Q 044658 87 QYFFLLGFEYTTAAFSCAF-INIVPVSTFLLALPF----RLEKLNMKSLDGRSKVLGAIVCIGGALTLT 150 (364)
Q Consensus 87 ~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~~~----l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~ 150 (364)
-.........+.++....+ ..-+-+...++..+= -+.+++..+ ++|+.+.++|+.++.
T Consensus 83 vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r------~lgi~L~l~gil~~~ 145 (150)
T COG3238 83 VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPR------ILGILLVLAGILLAR 145 (150)
T ss_pred hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHH------HHHHHHHHHHHHHhc
Confidence 5555555566665544333 334444555554432 247778888 999999999965553
No 101
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.25 E-value=0.041 Score=48.07 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhh
Q 044658 78 SALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALT 148 (364)
Q Consensus 78 ~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~l 148 (364)
..+++ +....+..+.++|.+....++...+.++++.+++.++++|+++..+ ++|+.+.+.|+.+
T Consensus 158 ~~~~~-a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~------~~g~~lV~~~~~l 221 (222)
T TIGR00803 158 VGLLN-VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTF------YLGAILVFLATFL 221 (222)
T ss_pred HHHHH-HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHH------HHHHHHHHeeeEe
Confidence 33443 6777788899999999999999999999999999999999999999 9999999998754
No 102
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=94.50 E-value=0.35 Score=36.11 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHH
Q 044658 11 IMMVAVNLGLAAANALLKKILDGGLN------HLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVT 84 (364)
Q Consensus 11 l~~~l~~~~~~~~~~~~k~~~~~~~~------p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 84 (364)
.-++...++||..+++.|.... +++ .-...++|-..... ..++.+.. -.++ -
T Consensus 6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~lqe~~tl~----------------l~w~Y~iP----FllN-q 63 (125)
T KOG4831|consen 6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIALQEMKTLF----------------LNWEYLIP----FLLN-Q 63 (125)
T ss_pred HHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHHHHHHHHH----------------HhHHHHHH----HHHH-H
Confidence 3467788999999999998876 333 22223333211100 11222222 2233 3
Q ss_pred HHHHHHHHhccccCcceeehccc-chhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhe
Q 044658 85 LAQYFFLLGFEYTTAAFSCAFIN-IVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLT 150 (364)
Q Consensus 85 ~~~~~~~~al~~~~~~~~~~l~~-~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~ 150 (364)
-+..+||.-+++.+.+.+..+.+ +.-.++++.+..+-.|....+. +.|..+.++|+.+..
T Consensus 64 cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a------~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 64 CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLA------LLGTSLIVFGIWLCI 124 (125)
T ss_pred hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhcccccccee------ehhhhHHhhhhhhee
Confidence 45667888899999999988866 7888899999887666666677 899999999987753
No 103
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=0.022 Score=51.33 Aligned_cols=123 Identities=16% Similarity=0.209 Sum_probs=88.3
Q ss_pred CCCchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHH
Q 044658 178 ADDWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGV 257 (364)
Q Consensus 178 ~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (364)
..++..|.++++.+.++.+...++.|+..++... . ..-.+. ...+......|| .|.
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-~-----------------~~ra~~--gg~~yl~~~~Ww----~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-S-----------------GLRAGE--GGYGYLKEPLWW----AGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhh-h-----------------cccccC--CCcchhhhHHHH----HHH
Confidence 4566889999999999999999998887665321 0 000000 111111112233 345
Q ss_pred hhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecC
Q 044658 258 VGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGK 324 (364)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~ 324 (364)
+..+++-.+-+.+-...+++.++++..++.+.+.+++..+++|++++...+|+.+.++|-.+.....
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 5555666666666667788999999999999999999999999999999999999999987776443
No 104
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.29 E-value=0.77 Score=39.75 Aligned_cols=137 Identities=12% Similarity=0.114 Sum_probs=97.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhh-------cCCCCCCHHHHHHHH
Q 044658 5 RQWKPIIMMVAVNLGLAAANALLKKILDGG-LNHLVIVAYRQIIATIFLAPVAYFWER-------KSRPKLTVPILCQLF 76 (364)
Q Consensus 5 ~~~~~~l~~~l~~~~~~~~~~~~k~~~~~~-~~p~~~~~~r~~~~~l~l~~~~~~~~~-------~~~~~~~~~~~~~~~ 76 (364)
+...|-++++++..+-|.....-...-.++ -+...+.+.--+.+++.+..-..+... ..+. +..|.-+.
T Consensus 169 t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~Rh---P~~~~~l~ 245 (337)
T KOG1580|consen 169 TFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRH---PYVFWDLT 245 (337)
T ss_pred ccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhc---cHHHHHHH
Confidence 345678888888888888877655443321 123344444444455544332221100 0111 23455566
Q ss_pred HHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 77 FSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 77 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
..++++ ++++.+-+.-..+-++-.-+++..+--+|+.+.++++++.+++.+| |+|..+.+.|...=..
T Consensus 246 l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQ------wlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 246 LLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQ------WLGTVLVFSALTADVV 313 (337)
T ss_pred HHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHH------HHHHHHHHHHhhhHhh
Confidence 778887 9999999999999999999999999999999999999999999999 9999999999887664
No 105
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.78 E-value=1.4 Score=40.07 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHH--HHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHH--HHHHHh
Q 044658 183 IGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTA--IMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITI--IYSGVV 258 (364)
Q Consensus 183 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~ 258 (364)
.....++.-+++..+-.+..|.....++-|..+.. .|.+.+.+.....-...-.+.+.......+-|..+ ++.+-
T Consensus 12 ~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~- 90 (314)
T KOG1444|consen 12 SPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGM- 90 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHH-
Confidence 34555556666666666777877777664444444 78877776665554433223333333334445443 33222
Q ss_pred hhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 259 GSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
...-..++++++.....++....|++..+....++|.+++..-+....++++|......
T Consensus 91 -----i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 91 -----LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred -----HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 22335678999999999999999999999999999999999999999998888766653
No 106
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=92.92 E-value=1.1 Score=40.52 Aligned_cols=124 Identities=9% Similarity=0.110 Sum_probs=86.1
Q ss_pred HHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCc-ccccch-hhHHHHHHHHHhhhHHHHHHHHHHHhccCccee
Q 044658 202 QARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNPAG-WAMKGK-LEIITIIYSGVVGSGLCYVGMAWCVEQRGPVFT 279 (364)
Q Consensus 202 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~ 279 (364)
.+...+.++=|...+..+..+-.+.........+..... ....+. ...-.+.-.| ++++.=..+-++++++++.+..
T Consensus 35 ~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPta-lata~DIGLSN~sl~yVtlSlY 113 (349)
T KOG1443|consen 35 FKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTA-LATALDIGLSNWSLEYVTLSLY 113 (349)
T ss_pred hhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhh-hhhhcccccccceeeeeeeeee
Confidence 344444444577777777776666665555554432111 111111 1222223444 3677777889999999999999
Q ss_pred hcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCcc
Q 044658 280 SAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSK 326 (364)
Q Consensus 280 s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~ 326 (364)
++.-...+++.++++.++-=|+++|.-..-..+|.+|+++..+...+
T Consensus 114 TM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq 160 (349)
T KOG1443|consen 114 TMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ 160 (349)
T ss_pred eeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc
Confidence 99999999999999999889999999888888899999888875443
No 107
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.84 E-value=0.85 Score=41.93 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=86.6
Q ss_pred CchHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhhcCC---CcccccchhhHHHHHHHH
Q 044658 180 DWAIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVERNP---AGWAMKGKLEIITIIYSG 256 (364)
Q Consensus 180 ~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~ 256 (364)
+-..|+++..+++++.+.+++-.||..+- ..+.......+-+-+..|.....-.-+ +-....+...+....+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkvk~W---sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKVKGW---SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 34789999999999999999988887543 233334333333334444433322111 112223334556666667
Q ss_pred HhhhHHHHHHHHHHHhccCccee-hcchhhhHHHHHHHHHHHhcC-------CccchhhHHHHHHHHhhhhheecC
Q 044658 257 VVGSGLCYVGMAWCVEQRGPVFT-SAFTPLIQIFVAIVGFFILHE-------RIYPGSVVGSIIVVIGLYILLWGK 324 (364)
Q Consensus 257 ~~~~~~~~~~~~~a~~~~~~~~~-s~~~~l~pv~~~~~~~~~l~e-------~~~~~~~~G~~li~~g~~l~~~~~ 324 (364)
++ =+++-..|-.++|+++.+.. ++..-+..+++.++--++.|+ +-....++|.++.++|+.+..+.-
T Consensus 81 ~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 81 VL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 64 56777889999999986543 344445555555554444332 223467899999999999887643
No 108
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.22 E-value=0.5 Score=41.89 Aligned_cols=141 Identities=21% Similarity=0.196 Sum_probs=102.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHhhh----cCCCCC-CHHHHHHHHHHH
Q 044658 6 QWKPIIMMVAVNLGLAAANALLKKILDGGL-NHLVIVAYRQIIATIFLAPVAYFWER----KSRPKL-TVPILCQLFFSA 79 (364)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~k~~~~~~~-~p~~~~~~r~~~~~l~l~~~~~~~~~----~~~~~~-~~~~~~~~~~~g 79 (364)
...|.++..++.+.-+...+..|.....-. --..++++.-+.+.++++|...+... ...+.. ..+.|..+.+.|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 467999999999999999999997765311 26788889999999999998876432 122222 567788888888
Q ss_pred HHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheecc
Q 044658 80 LTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYK 153 (364)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~ 153 (364)
+++ +...+...+=++-+++-.--+-..--...=.+++..+++|..+... |-+-++.+.|-..-++-+
T Consensus 263 lfg-F~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lw------wtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 263 LFG-FAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLW------WTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred HHH-HHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhhe------eeeeEEEEehhHHHHHHH
Confidence 887 4444444455565666544444444455566778899999999999 999988888888776543
No 109
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.71 E-value=1.4 Score=37.95 Aligned_cols=111 Identities=15% Similarity=0.193 Sum_probs=87.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccch
Q 044658 34 GLNHLVIVAYRQIIATIFLAPVAYFWERKSRP----KLTVPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIV 109 (364)
Q Consensus 34 ~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~ 109 (364)
+..-+...++.-+++..+++.+-...+.+... ..+......+++.|++. ..-.++.-++++-++....++...+.
T Consensus 182 Nf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 182 NFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHHhh
Confidence 34577788888888888887776554432221 23445566778889987 77778888999988888889998898
Q ss_pred hHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 110 PVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 110 pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
-.-.++.+.++++|+.+... +.++++++...++-..
T Consensus 261 Klp~alaGlvffdap~nf~s------i~sillGflsg~iYav 296 (309)
T COG5070 261 KLPIALAGLVFFDAPVNFLS------IFSILLGFLSGAIYAV 296 (309)
T ss_pred hChHHHhhhhhcCCchhHHH------HHHHHHHHHHHHHHHH
Confidence 88999999999999999999 9999999887776654
No 110
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=87.47 E-value=0.13 Score=45.06 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=96.3
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhcc-CCCchhHHHHHHHHHHHHHHHHHHHhhcCCCcccccchhhHHHHHHHHHhh
Q 044658 181 WAIGSIVLIAFTVVWSSWFLIQARIGKK-YPCKYSSTAIMALFGAIQSAVLSLIVERNPAGWAMKGKLEIITIIYSGVVG 259 (364)
Q Consensus 181 ~~~G~~~~l~a~~~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 259 (364)
..+|..++=.-.+|-......+..+.++ .+.|...++.....-+++-.++..+..+ .. ...|-.-+.++. .
T Consensus 16 ~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~---~~----~~~~~hYilla~-~ 87 (336)
T KOG2766|consen 16 TLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK---YI----KAKWRHYILLAF-V 87 (336)
T ss_pred hhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH---HH----HHHHHHhhheeE-E
Confidence 3444444444444444444555555555 3357777777777777776666665431 11 123444555665 3
Q ss_pred hHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCc
Q 044658 260 SGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKS 325 (364)
Q Consensus 260 ~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~ 325 (364)
-+=++++..+|-|+++.+.+..+..-..+...+++|++++.+-.+.++.|.++.++|+.+.....-
T Consensus 88 DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV 153 (336)
T KOG2766|consen 88 DVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV 153 (336)
T ss_pred eecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence 566787888999999999999999888999999999999999999999999999999988876543
No 111
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=85.19 E-value=1.2 Score=40.10 Aligned_cols=132 Identities=13% Similarity=0.093 Sum_probs=72.9
Q ss_pred HHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHh-hc-C------CCccc---ccchhhHHHHHHHHH
Q 044658 189 IAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIV-ER-N------PAGWA---MKGKLEIITIIYSGV 257 (364)
Q Consensus 189 l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~------~~~~~---~~~~~~~~~l~~~~~ 257 (364)
+++.+||+-+-..+|...++.. ..+.+++-+.++.++...+.-+. +. . +..+. ..+...+.. ...|.
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~-A~aGG 79 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLF-AMAGG 79 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHH-HHHhh
Confidence 5678899988888887766532 22345566666555444433232 21 1 11111 111122222 23333
Q ss_pred hhhHHHHHHHHHHHhccCcceehcch-hhhHHHHHHHHHHHhcCCcc--chhhHHHHHHHHhhhhheec
Q 044658 258 VGSGLCYVGMAWCVEQRGPVFTSAFT-PLIQIFVAIVGFFILHERIY--PGSVVGSIIVVIGLYILLWG 323 (364)
Q Consensus 258 ~~~~~~~~~~~~a~~~~~~~~~s~~~-~l~pv~~~~~~~~~l~e~~~--~~~~~G~~li~~g~~l~~~~ 323 (364)
+.--+++.+..+++...+.+.+-++. .+.-++++.+.+ ++..+.+ ..-..|..++++++++-...
T Consensus 80 vvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~a~iLF~GV~cf~iAI~lga~a 147 (336)
T PF07168_consen 80 VVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINRAEILFPGVACFLIAIILGAAA 147 (336)
T ss_pred HhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCCceEEEccHHHHHHHHHHHHHH
Confidence 34557888899999888877665554 233344555555 3455544 24566888888877775433
No 112
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=84.92 E-value=1.3 Score=39.56 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheec
Q 044658 259 GSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWG 323 (364)
Q Consensus 259 ~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~ 323 (364)
+-..+-.+.+.+++.++++..-++.--..+++-+++..+++.+++..||+|+..+.+|+......
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 45566777888999999999999999999999999999999999999999999999999887643
No 113
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=82.25 E-value=5.3 Score=35.57 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC------CCCCHHHHHHHHHH
Q 044658 6 QWKPIIMMVAVNLGLAAANALLKKILD-GGLNHLVIVAYRQIIATIFLAPVAYFWERKSR------PKLTVPILCQLFFS 78 (364)
Q Consensus 6 ~~~~~l~~~l~~~~~~~~~~~~k~~~~-~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~------~~~~~~~~~~~~~~ 78 (364)
+..|+.++-.+.++-+.-.-+-..... +.-+..+++++.+.++.++++....... ... .+.+++...+.++.
T Consensus 188 ~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTg-e~f~a~~fcaehp~~tyGy~~~~ 266 (367)
T KOG1582|consen 188 NLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTG-ELFSAWTFCAEHPVRTYGYAFLF 266 (367)
T ss_pred ceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcc-cchhhhHHHHhCcHhHHHHHHHH
Confidence 445665555555554444433333333 2345778888888888887776654321 111 12345677777777
Q ss_pred HHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheecc
Q 044658 79 ALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYK 153 (364)
Q Consensus 79 g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~ 153 (364)
+..+ .++......=++.-.+..++.+...--..+.+++++++.++++.+. .-+.++.+.|+++=...+
T Consensus 267 s~~g-ylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy------~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 267 SLAG-YLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQY------VWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHh-HhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHH------hhhhHHHHHHHHhhcccC
Confidence 7766 6666555555566677777777778888999999999999999999 999999999999887544
No 114
>PRK02237 hypothetical protein; Provisional
Probab=81.66 E-value=8.6 Score=29.09 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=38.9
Q ss_pred hcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecC
Q 044658 280 SAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGK 324 (364)
Q Consensus 280 s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~ 324 (364)
+...-+-.+.++++++.+-|++|+...++|..+.++|+.++.+..
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 455667778899999999999999999999999999998887654
No 115
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=76.89 E-value=4.7 Score=30.38 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=38.8
Q ss_pred hcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCc
Q 044658 280 SAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKS 325 (364)
Q Consensus 280 s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~ 325 (364)
+...-.-.+.++++++.+-|++|+...++|..+.++|+.++.+..|
T Consensus 61 AAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 61 AAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 3445566788999999999999999999999999999998877543
No 116
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=76.20 E-value=48 Score=28.45 Aligned_cols=32 Identities=3% Similarity=0.108 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCccee
Q 044658 70 PILCQLFFSALTGVTLAQYFFLLGFEYTTAAFS 102 (364)
Q Consensus 70 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~ 102 (364)
+.+.+.+..++.. .+.+...+.....+++...
T Consensus 144 ~~~~k~~~~~~~~-~~~w~~~~~~~~~lp~~in 175 (206)
T PF06570_consen 144 PSWWKYILISVLA-MVLWIVIFVLTSFLPPVIN 175 (206)
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHccccCC
Confidence 3444444444443 4555555555555665533
No 117
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=75.78 E-value=3.3 Score=31.09 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHhhhhh
Q 044658 291 AIVGFFILHERIYPGSVVGSIIVVIGLYIL 320 (364)
Q Consensus 291 ~~~~~~~l~e~~~~~~~~G~~li~~g~~l~ 320 (364)
..++.++++|++++..+.|..+++.+++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456788999999999999999998887654
No 118
>PRK02237 hypothetical protein; Provisional
Probab=75.50 E-value=33 Score=26.02 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=41.1
Q ss_pred HHHhccc-cCcceeeh-cccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 90 FLLGFEY-TTAAFSCA-FINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 90 ~~~al~~-~~~~~~~~-l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
+...++- .+.+.+-. .-....+...+-.+.+-++|+++.+ ++|..++++|+.++..
T Consensus 48 ~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D------~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 48 WLLTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWD------WIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHhcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhH------HHhHHHHHHhHHHhee
Confidence 3344443 33454433 3346666777888999999999999 9999999999999875
No 119
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=73.96 E-value=36 Score=25.75 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=42.6
Q ss_pred HHHhccccCccee-ehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 90 FLLGFEYTTAAFS-CAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 90 ~~~al~~~~~~~~-~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
+...++-.+.+.+ +..-....+...+-.+.+-++++++.+ ++|..++++|+.++..
T Consensus 47 ~l~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D------~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 47 WLLTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWD------WIGAAICLVGVAIILF 103 (107)
T ss_pred HHhhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHH------HHhHHHHHHhHHheEe
Confidence 3344444444554 333447777778889999999999999 9999999999999985
No 120
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=72.45 E-value=1.2 Score=39.59 Aligned_cols=27 Identities=19% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhhccccccccccccccchhHHHHHHhhhhhhe
Q 044658 118 LPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLT 150 (364)
Q Consensus 118 ~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~ 150 (364)
.+|.|+-+-+.. .+|++++++-..+..
T Consensus 70 mlF~RrLLCPLG------lLCiilimi~lLv~~ 96 (381)
T PF05297_consen 70 MLFKRRLLCPLG------LLCIILIMIVLLVSM 96 (381)
T ss_dssp ---------------------------------
T ss_pred HHHHHhhcCcch------HHHHHHHHHHHHHHH
Confidence 334444455555 666666665555443
No 121
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.46 E-value=9 Score=28.32 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHHhhhhhee
Q 044658 291 AIVGFFILHERIYPGSVVGSIIVVIGLYILLW 322 (364)
Q Consensus 291 ~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~ 322 (364)
+.++.+.++|++.+..+.|..++..|+....+
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 45788899999999999999999999877653
No 122
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=68.04 E-value=6.3 Score=35.72 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcC------CC-------CCCHHHHHHHHHHH
Q 044658 13 MVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKS------RP-------KLTVPILCQLFFSA 79 (364)
Q Consensus 13 ~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~------~~-------~~~~~~~~~~~~~g 79 (364)
|+++.+|||++....|+.-.+ .-..+..++-+.++.++..++..+....- .+ ..++......+.-|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~-gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERR-GRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHHhc-CCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 356789999999999977553 33334567777777666655543322211 11 12345555566777
Q ss_pred HHHHHHHHHHHHHhccccCcceeehccc-chhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhh
Q 044658 80 LTGVTLAQYFFLLGFEYTTAAFSCAFIN-IVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALT 148 (364)
Q Consensus 80 ~~~~~~~~~~~~~al~~~~~~~~~~l~~-~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~l 148 (364)
++. .+++.+..+|+.+...+.+-++.. +.-+....+-|+. ..|.++.. ....|+.+.++.+++
T Consensus 80 vvf-nlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~----iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 80 VVF-NLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAE----ILFPGVACFLIAIIL 143 (336)
T ss_pred Hhh-hhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCce----EEEccHHHHHHHHHH
Confidence 775 899999999999999998877754 5555555556644 45554332 003355554444443
No 123
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=66.28 E-value=14 Score=27.74 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=43.3
Q ss_pred HHHHHHHHHhccCcceehcc-hhhhHHHHHHHHHHHhcCC-ccchhhHHHHHHHHhhhhh
Q 044658 263 CYVGMAWCVEQRGPVFTSAF-TPLIQIFVAIVGFFILHER-IYPGSVVGSIIVVIGLYIL 320 (364)
Q Consensus 263 ~~~~~~~a~~~~~~~~~s~~-~~l~pv~~~~~~~~~l~e~-~~~~~~~G~~li~~g~~l~ 320 (364)
+-.+|+.-+.+.+-+.+..+ +.+.-.++.+++.. +||. ....-++|..++++|+.+.
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccceeehhhhHHhhhhhhe
Confidence 44567777888887777665 45677888888984 5555 5677899999999998764
No 124
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=63.85 E-value=1.6e+02 Score=29.35 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=9.3
Q ss_pred cchhhhHHHHHHHHHHH
Q 044658 281 AFTPLIQIFVAIVGFFI 297 (364)
Q Consensus 281 ~~~~l~pv~~~~~~~~~ 297 (364)
......|+-+.++|.+.
T Consensus 351 ~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444566666666643
No 125
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=63.37 E-value=10 Score=33.98 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhc-cCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCccccch
Q 044658 262 LCYVGMAWCVEQ-RGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKSKEIDE 330 (364)
Q Consensus 262 ~~~~~~~~a~~~-~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 330 (364)
....+-+++++. ++...--++..-.++..+++++++.|.+-+..|+....++-+|+++....+.++-+.
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 455667777776 666777788999999999999999999999999999999999999998877665444
No 126
>PF15102 TMEM154: TMEM154 protein family
Probab=63.28 E-value=8.5 Score=30.88 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=14.3
Q ss_pred hHHHHHHHHhhhhheecCccccch
Q 044658 307 VVGSIIVVIGLYILLWGKSKEIDE 330 (364)
Q Consensus 307 ~~G~~li~~g~~l~~~~~~~~~~~ 330 (364)
+++.++++..++++.+.|||+.|.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccCC
Confidence 344455566677777766665544
No 127
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=62.32 E-value=95 Score=26.14 Aligned_cols=114 Identities=10% Similarity=0.112 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044658 9 PIIMMVAVNLGLAAANALLKKILDGGLNHLVIVAYRQIIATIFLAPVAYFWERKSRPKLTVPILCQLFFSALTGVTLAQY 88 (364)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~k~~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (364)
+.++.-+-+++-|.+..+.+.+.. ..-......-...+......+.++.+.+. -+-.+..+++.+...+.. .+-+.
T Consensus 101 sLl~lg~~aLlsgitaff~~nA~~--~GlItlll~a~vgGfamy~my~y~yr~~a-d~sqr~~~~K~~lv~~~s-m~lWi 176 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNAQV--YGLITLLLTAVVGGFAMYIMYYYAYRMRA-DNSQRPGTWKYLLVAVLS-MLLWI 176 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCcc--hhHHHHHHHHHhhhHHHHHHHHHHHHhhc-ccccCCchHHHHHHHHHH-HHHHH
Confidence 445555667777888888776533 34444444444444444444333322221 111222233444444444 56666
Q ss_pred HHHHhccccCcceeehcccchhHHHHHH------hhhhccccccccc
Q 044658 89 FFLLGFEYTTAAFSCAFINIVPVSTFLL------ALPFRLEKLNMKS 129 (364)
Q Consensus 89 ~~~~al~~~~~~~~~~l~~~~pi~~~ll------~~~~l~e~~~~~~ 129 (364)
+.+.+-.++|.+.--.+ .|+--.++ -++.+++|.+.+.
T Consensus 177 ~v~i~t~~lPtslN~~L---~pi~l~IiGav~lalRfylkkk~NIqs 220 (226)
T COG4858 177 AVMIATVFLPTSLNPQL---PPIALTIIGAVILALRFYLKKKKNIQS 220 (226)
T ss_pred HHHHHHhhCCCcCCcCC---chHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 67777777887754333 33333322 3444566666543
No 128
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=59.40 E-value=16 Score=29.08 Aligned_cols=16 Identities=13% Similarity=0.619 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHhhhhh
Q 044658 305 GSVVGSIIVVIGLYIL 320 (364)
Q Consensus 305 ~~~~G~~li~~g~~l~ 320 (364)
..++|..+.+.|++..
T Consensus 88 ~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 88 SIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455666666665544
No 129
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=57.39 E-value=42 Score=25.32 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=25.0
Q ss_pred HHHHhhhhccccccccccccccchhHHHHHHhhhhhh
Q 044658 113 TFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTL 149 (364)
Q Consensus 113 ~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li 149 (364)
.+.++.++++|++++.. ..|-.+.+.++..+
T Consensus 76 F~~Fsv~~l~E~l~~n~------l~af~~i~~av~fi 106 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNY------LWAFLCILGAVYFI 106 (108)
T ss_pred eHHHHHHHhCCCccHHH------HHHHHHHHHhhhee
Confidence 34567889999999999 88888887777654
No 130
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=57.32 E-value=81 Score=23.76 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=33.9
Q ss_pred ccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhhee
Q 044658 106 INIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTL 151 (364)
Q Consensus 106 ~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~ 151 (364)
-....+...+-.+++-+.++.+.+ ++|..++++|+.++..
T Consensus 65 GGvyI~~sL~W~~~Vdg~~pdr~D------~~Ga~icl~G~~vil~ 104 (109)
T COG1742 65 GGVYIAASLAWLWVVDGVRPDRYD------WIGAAICLAGVAVILF 104 (109)
T ss_pred cchHHHHHHHHHHHHcCcCCcHHH------hhhHHHHHhceeeeEe
Confidence 346666777778888899999999 9999999999998875
No 131
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=54.96 E-value=50 Score=24.86 Aligned_cols=46 Identities=15% Similarity=0.178 Sum_probs=38.4
Q ss_pred hcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCc
Q 044658 280 SAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKS 325 (364)
Q Consensus 280 s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~ 325 (364)
+...-+-.+.++++.+.+=|.+|+...++|..+.++|+.++....+
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 4456667788999999888999999999999999999888776543
No 132
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=53.79 E-value=2.1e+02 Score=27.50 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=33.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHhc---cCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHH
Q 044658 252 IIYSGVVGSGLCYVGMAWCVEQ---RGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVI 315 (364)
Q Consensus 252 l~~~~~~~~~~~~~~~~~a~~~---~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~ 315 (364)
.+.+|+++..+++..... +++ =++..+-.+-...=+++.+..-++-++..-..|++|++.+++
T Consensus 296 A~iiG~iag~v~~~~~~~-~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~~~l~~Ql~g~~~~~~ 361 (404)
T TIGR03644 296 ATLIGAVGGVIVVFSIVL-LDKLKIDDPVGAISVHGVAGIWGTLVVPITNGDASFGAQLIGAATIFA 361 (404)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCCCCcCchHhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 444555556666554432 333 345555555555556666665544333333458888776554
No 133
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=52.82 E-value=1.5e+02 Score=25.36 Aligned_cols=33 Identities=15% Similarity=0.461 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCccchhhHHHHHHH--Hhhhhheec
Q 044658 291 AIVGFFILHERIYPGSVVGSIIVV--IGLYILLWG 323 (364)
Q Consensus 291 ~~~~~~~l~e~~~~~~~~G~~li~--~g~~l~~~~ 323 (364)
-.+|..++.+..=+.+.+|..+.+ +|.+...++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445777788877788888887765 354555443
No 134
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=50.95 E-value=48 Score=27.12 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=44.2
Q ss_pred HHHhhhhhheeccCCcccccccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHHHHhc-----cCCCchhH
Q 044658 141 VCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQARIGK-----KYPCKYSS 215 (364)
Q Consensus 141 ~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k~~~~-----~~~~~~~~ 215 (364)
+++.|+.++...++ .+....+..++.+++.|++..++.....+ +.+.|+.-
T Consensus 114 CaVLgvaLln~~~~------------------------~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG 169 (193)
T COG4657 114 CAVLGVALLNINEG------------------------HNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRG 169 (193)
T ss_pred hHHHHHHHHHhhhh------------------------hhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 57788888875332 23466788889999999988877654443 33455666
Q ss_pred HHHHHHHHHHHHHHHH
Q 044658 216 TAIMALFGAIQSAVLS 231 (364)
Q Consensus 216 ~~~~~~~~~~~~~~~~ 231 (364)
..+.++.+.+++....
T Consensus 170 ~~ialitagLmSlaFm 185 (193)
T COG4657 170 AAIALITAGLMSLAFM 185 (193)
T ss_pred cchHHHHHHHHHHHHc
Confidence 6666666666655443
No 135
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=50.20 E-value=6.7 Score=31.33 Aligned_cols=27 Identities=7% Similarity=0.260 Sum_probs=19.6
Q ss_pred HhccCcceehcchhhhHHHHHHHHHHH
Q 044658 271 VEQRGPVFTSAFTPLIQIFVAIVGFFI 297 (364)
Q Consensus 271 ~~~~~~~~~s~~~~l~pv~~~~~~~~~ 297 (364)
+..-+....+.+.|+.|+++++++.++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456667778888999888887754
No 136
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=49.96 E-value=5.3 Score=27.19 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=17.3
Q ss_pred hhHHHHHHHHhhhhheecCccccc
Q 044658 306 SVVGSIIVVIGLYILLWGKSKEID 329 (364)
Q Consensus 306 ~~~G~~li~~g~~l~~~~~~~~~~ 329 (364)
-+++++++++|++++....++...
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~ 29 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTT 29 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccccc
Confidence 467888888999888766555433
No 137
>PRK10666 ammonium transporter; Provisional
Probab=43.04 E-value=3.2e+02 Score=26.50 Aligned_cols=52 Identities=6% Similarity=-0.043 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 044658 182 AIGSIVLIAFTVVWSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIV 234 (364)
Q Consensus 182 ~~G~~~~l~a~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (364)
....+..+++++..-......|+.. +.+||..........+.+-.+...++.
T Consensus 304 ~~A~iiG~vag~v~~~~~~~l~~~~-~iDD~~~a~~vHgv~Gi~G~l~~glfa 355 (428)
T PRK10666 304 GGALIIGVVAGLAGLWGVTMLKRWL-RVDDPCDVFGVHGVCGIVGCILTGIFA 355 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCcCccHhhhHhHHHHHHHHHHhh
Confidence 4566666666665544333333322 345677666666666666555555554
No 138
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.29 E-value=1.4e+02 Score=22.20 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=26.5
Q ss_pred HHHhhhhccccccccccccccchhHHHHHHhhhhhhe
Q 044658 114 FLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLT 150 (364)
Q Consensus 114 ~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~ 150 (364)
+.++.+.+||++++.. +.+..+...|+..+.
T Consensus 84 v~Fsvfyl~epl~~~~------l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNY------LWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHH------HHHHHHHHHHHHHhc
Confidence 4568889999999999 999998888888764
No 139
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=41.30 E-value=3.1e+02 Score=25.76 Aligned_cols=22 Identities=9% Similarity=-0.306 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH
Q 044658 249 IITIIYSGVVGSGLCYVGMAWC 270 (364)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~a 270 (364)
++.+...+.+...+++.+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~ 83 (385)
T PF03547_consen 62 LWFIPVFAFIIFILGLLLGFLL 83 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333334444444433333
No 140
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=41.14 E-value=2.2e+02 Score=26.19 Aligned_cols=76 Identities=9% Similarity=0.034 Sum_probs=44.3
Q ss_pred hhHHHHHHhhhhhheeccCCcccccccccccccccccCCCCCCCCchHHHHHHHHHHHHHHhHH-------HHH-HHHhc
Q 044658 136 VLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDVNTMNSSKKADDWAIGSIVLIAFTVVWSSWF-------LIQ-ARIGK 207 (364)
Q Consensus 136 ~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~-------i~~-k~~~~ 207 (364)
+.++.++..|+..... .-+.. . ......+..+..++.+.+.... +.. |+..+
T Consensus 7 ~f~~~mGtg~l~~~~~-~~~~~-~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~ 66 (330)
T PF03595_consen 7 WFGMVMGTGGLSNLLY-LLPYH-F------------------GGLAILSEVLFILALILFLVLLVLYLLRWIRYPKAFKA 66 (330)
T ss_dssp GGHHHHHHHHHHHHHH-TTTTT-S------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHh-c------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8889999999988862 11111 1 2334677777777777776622 222 22333
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHH
Q 044658 208 KYPCKYSSTAIMALFGAIQSAVLS 231 (364)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~ 231 (364)
+..||....++.....+...+...
T Consensus 67 el~~p~~~~f~~t~~m~~~~l~~~ 90 (330)
T PF03595_consen 67 ELRHPVRSSFFPTFPMALMLLAAF 90 (330)
T ss_dssp HHHSTTGGGGGGHHHHHHHHHHHH
T ss_pred HhcCCcccchHHHHHHHHHHHHHH
Confidence 444677766666666665555443
No 141
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=40.60 E-value=43 Score=24.79 Aligned_cols=12 Identities=8% Similarity=0.418 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhh
Q 044658 308 VGSIIVVIGLYI 319 (364)
Q Consensus 308 ~G~~li~~g~~l 319 (364)
.++.+|++|+.+
T Consensus 44 aai~MIf~Gi~l 55 (96)
T PF07214_consen 44 AAIAMIFVGIGL 55 (96)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 142
>PHA03049 IMV membrane protein; Provisional
Probab=39.37 E-value=14 Score=25.16 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=16.5
Q ss_pred hhHHHHHHHHhhhhheecCcccc
Q 044658 306 SVVGSIIVVIGLYILLWGKSKEI 328 (364)
Q Consensus 306 ~~~G~~li~~g~~l~~~~~~~~~ 328 (364)
-+++++++++|++++...+++..
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~ 28 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc
Confidence 35678888889888876665543
No 143
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=38.52 E-value=3.9e+02 Score=26.20 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=19.4
Q ss_pred ccchhhHHHHHHHHhhhhheecCc
Q 044658 302 IYPGSVVGSIIVVIGLYILLWGKS 325 (364)
Q Consensus 302 ~~~~~~~G~~li~~g~~l~~~~~~ 325 (364)
++..|++.+.++++|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 678899999999999887765433
No 144
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=37.12 E-value=56 Score=27.09 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=46.9
Q ss_pred HHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhheeccCCcccccccccccccc
Q 044658 90 FLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTLTLYKGKPFYLGATNHMTNDV 169 (364)
Q Consensus 90 ~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li~~~~~~~~~~~~~~~~~~~~ 169 (364)
++.+.++.+.-.++...-...+....+.|+..|+--...- ..++.+.+.|...+...++...
T Consensus 13 FF~~yk~~~I~~AT~~livAt~i~l~~~w~~~rkv~km~l------~s~~~v~vFG~lTl~f~~d~FI------------ 74 (180)
T COG2917 13 FFAAYKVYGIYAATAVLIVATVIQLAILWIKYRKVEKMQL------ISGVVVVVFGGLTLIFHNDTFI------------ 74 (180)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH------HHHHHHHHhchhHhhccCcceE------------
Confidence 3333343333334444444455566667766665444444 5566777777777764332222
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHhHHHHHH
Q 044658 170 NTMNSSKKADDWAIGSIVLIAFTVVWSSWFLIQA 203 (364)
Q Consensus 170 ~~~~~~~~~~~~~~G~~~~l~a~~~~a~~~i~~k 203 (364)
....-++..+.|.+..+...+..|
T Consensus 75 ----------KwK~TIi~~lFa~~Llgs~~~~~k 98 (180)
T COG2917 75 ----------KWKPTIIYWLFALVLLGSQFLFKK 98 (180)
T ss_pred ----------EeeHHHHHHHHHHHHHHHHHHhcC
Confidence 235577777777777775544443
No 145
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=36.74 E-value=3.2e+02 Score=24.57 Aligned_cols=111 Identities=17% Similarity=0.047 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCC---CHHHHHHHHHHHHHHHHHHHH
Q 044658 15 AVNLGLAAANALLKKILD-GGLNHLVIVAYRQIIATIFLAPVAYFWERKSR--PKL---TVPILCQLFFSALTGVTLAQY 88 (364)
Q Consensus 15 l~~~~~~~~~~~~k~~~~-~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~--~~~---~~~~~~~~~~~g~~~~~~~~~ 88 (364)
...+++++.+.+....-. +...|-.-+.+-.+..+.+...++..++.+++ .+. +.|.|. ..+++. ..-..
T Consensus 101 ~ll~lyAlinAl~~l~dGGR~v~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~---Mst~lS-~al~V 176 (314)
T COG3965 101 ALLCLYALINALGSLLDGGREVEPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWL---MSTCLS-AALFV 176 (314)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHH---HHHHHH-HHHHH
Confidence 344566666666654432 23556666666666555555555543332222 122 344454 333333 33333
Q ss_pred HHHHhccccCcceeehcccchhHHHHHHhhhhccccccccc
Q 044658 89 FFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKS 129 (364)
Q Consensus 89 ~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~ 129 (364)
.|..|.....-..+-...+.-|.+.++.+.++..-++...+
T Consensus 177 aF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk 217 (314)
T COG3965 177 AFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVK 217 (314)
T ss_pred HHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHH
Confidence 44444444444555666778999999999888666654443
No 146
>PF15471 TMEM171: Transmembrane protein family 171
Probab=35.67 E-value=32 Score=30.53 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=19.3
Q ss_pred chhhHHHHHHHHhhhhheecCccc
Q 044658 304 PGSVVGSIIVVIGLYILLWGKSKE 327 (364)
Q Consensus 304 ~~~~~G~~li~~g~~l~~~~~~~~ 327 (364)
..|+.|-.+++.|++.+...+-|+
T Consensus 161 slQImGPlIVl~GLCFFVVAHvKK 184 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVAHVKK 184 (319)
T ss_pred ehhhhhhHHHHHhhhhhheeeeee
Confidence 468999999999999887665544
No 147
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=35.36 E-value=34 Score=20.90 Aligned_cols=19 Identities=42% Similarity=1.043 Sum_probs=11.7
Q ss_pred HHHHHHHHhhhhheecCcc
Q 044658 308 VGSIIVVIGLYILLWGKSK 326 (364)
Q Consensus 308 ~G~~li~~g~~l~~~~~~~ 326 (364)
+|.++++.+.+++.+++++
T Consensus 21 V~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred hHHHHHHHHHHhheEEecc
Confidence 4556666677777665544
No 148
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=34.50 E-value=4.4e+02 Score=25.59 Aligned_cols=58 Identities=14% Similarity=-0.020 Sum_probs=33.8
Q ss_pred HHHhhhHHHHHHHHHHHhccCcceehcchhhhHHHHHHHHHHHhcCCccchhhHHHHHHHHhhhhheecCc
Q 044658 255 SGVVGSGLCYVGMAWCVEQRGPVFTSAFTPLIQIFVAIVGFFILHERIYPGSVVGSIIVVIGLYILLWGKS 325 (364)
Q Consensus 255 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~l~pv~~~~~~~~~l~e~~~~~~~~G~~li~~g~~l~~~~~~ 325 (364)
.++++.-..|+.| .|+...|...-+.. -.--+..-++..++|.++.++.+.....+..
T Consensus 249 ssvv~~Y~~yL~~-SAlss~P~~~CNp~------------~~~~~~~~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 249 SSVVSLYTTYLTW-SALSSEPDKECNPS------------GSRSGSWNTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred HHHHHHHHHHHHH-HHHHcCCCcccCCc------------ccccCCcchHHHHHHHHHHHHHHHHhccccc
Confidence 4444333444444 66776665555544 0012334566789999998888877765444
No 149
>PF14851 FAM176: FAM176 family
Probab=26.97 E-value=91 Score=25.43 Aligned_cols=6 Identities=17% Similarity=0.013 Sum_probs=2.3
Q ss_pred cceehc
Q 044658 276 PVFTSA 281 (364)
Q Consensus 276 ~~~~s~ 281 (364)
|-.+++
T Consensus 19 PE~~aL 24 (153)
T PF14851_consen 19 PERFAL 24 (153)
T ss_pred hHHHHH
Confidence 333333
No 150
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=25.31 E-value=8.2e+02 Score=25.82 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.0
Q ss_pred ceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhhh
Q 044658 100 AFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALTL 149 (364)
Q Consensus 100 ~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~li 149 (364)
+.+.++..+.|+-.+.++.+.+.+|.+... +.+.+-.++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~------~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKA------FFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchH------HHHHHHHHHHHHHh
Confidence 345667788999999888887666654444 66666666666655
No 151
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=24.55 E-value=44 Score=24.19 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=19.6
Q ss_pred CccchhhHHHHHHHHhhhhheecCc
Q 044658 301 RIYPGSVVGSIIVVIGLYILLWGKS 325 (364)
Q Consensus 301 ~~~~~~~~G~~li~~g~~l~~~~~~ 325 (364)
..++..++|++++++|+.++..+..
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~ 28 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFF 28 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999988875433
No 152
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=24.36 E-value=22 Score=28.16 Aligned_cols=22 Identities=14% Similarity=0.245 Sum_probs=16.1
Q ss_pred cceehcchhhhHHHHHHHHHHH
Q 044658 276 PVFTSAFTPLIQIFVAIVGFFI 297 (364)
Q Consensus 276 ~~~~s~~~~l~pv~~~~~~~~~ 297 (364)
....+.+.|+-|++.++.+.++
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888743
No 153
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=23.04 E-value=4.4e+02 Score=21.83 Aligned_cols=58 Identities=10% Similarity=0.078 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCcceeehcccchhHHHHHHhhhhccccccccccccccchhHHHHHHhhhhh
Q 044658 69 VPILCQLFFSALTGVTLAQYFFLLGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKSLDGRSKVLGAIVCIGGALT 148 (364)
Q Consensus 69 ~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~~~~gi~~~~~Gv~l 148 (364)
+++-....+.|.+. ++++.++.=|.-+-+-.+.+- .+.+... |+..+++.+|..+
T Consensus 20 ~~~~~~~~~AGaLF-~~gwWi~iDa~v~s~~~~~~~------------------~~~~f~~------~ipgI~stlgm~m 74 (166)
T PF05255_consen 20 KRNAIGSYVAGALF-ALGWWIFIDAAVYSKHANGSD------------------VHVTFVD------WIPGIFSTLGMFM 74 (166)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHhCCccCCCC------------------cccccee------eehHHHHHHHHHH
Confidence 34444456677775 788887776654443322111 2788888 9999999999999
Q ss_pred hee
Q 044658 149 LTL 151 (364)
Q Consensus 149 i~~ 151 (364)
+..
T Consensus 75 vN~ 77 (166)
T PF05255_consen 75 VNS 77 (166)
T ss_pred hcc
Confidence 974
No 154
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.11 E-value=2.7e+02 Score=23.78 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 044658 9 PIIMMVAVNLGLAAANALLKKILD 32 (364)
Q Consensus 9 ~~l~~~l~~~~~~~~~~~~k~~~~ 32 (364)
|+...++.++..|...........
T Consensus 112 gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 112 GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777666665554443
No 155
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.86 E-value=54 Score=21.98 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=14.5
Q ss_pred hhHHHHHHhhhhhheec
Q 044658 136 VLGAIVCIGGALTLTLY 152 (364)
Q Consensus 136 ~~gi~~~~~Gv~li~~~ 152 (364)
++|+++.+.|+.++.+.
T Consensus 2 iigi~Llv~GivLl~~G 18 (59)
T PF11381_consen 2 IIGIALLVGGIVLLYFG 18 (59)
T ss_pred eeeehHHHHHHHHHHhh
Confidence 78899999999999753
No 156
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=21.74 E-value=1.1e+02 Score=17.33 Aligned_cols=14 Identities=14% Similarity=0.261 Sum_probs=7.5
Q ss_pred cchhhHHHHHHHHh
Q 044658 303 YPGSVVGSIIVVIG 316 (364)
Q Consensus 303 ~~~~~~G~~li~~g 316 (364)
++..++|..++..+
T Consensus 11 ~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 11 SLLLLLGLLLLGLG 24 (34)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566677444443
No 157
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=21.62 E-value=4.9e+02 Score=21.89 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCccchhhHHHHHHHH--hhhhheec
Q 044658 291 AIVGFFILHERIYPGSVVGSIIVVI--GLYILLWG 323 (364)
Q Consensus 291 ~~~~~~~l~e~~~~~~~~G~~li~~--g~~l~~~~ 323 (364)
-.+|..++.|-.-+.++.|.++.++ |.+...++
T Consensus 132 ~~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~~ 166 (186)
T MTH00057 132 EVLGRVLYTDYYYLFILASFILLVAMIGAIVLTHD 166 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4457777888888888888877653 44444443
No 158
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=21.37 E-value=29 Score=28.35 Aligned_cols=19 Identities=5% Similarity=0.043 Sum_probs=10.9
Q ss_pred eehcchhhhHHHHHHHHHH
Q 044658 278 FTSAFTPLIQIFVAIVGFF 296 (364)
Q Consensus 278 ~~s~~~~l~pv~~~~~~~~ 296 (364)
..+.+.|+-|++.++.+..
T Consensus 76 kaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 76 RSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666543
No 159
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=20.87 E-value=98 Score=26.60 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=29.9
Q ss_pred CcceehcchhhhHHHHHHHHHHHhcCCcc-chhhHH-HHHHHHhhhhhe
Q 044658 275 GPVFTSAFTPLIQIFVAIVGFFILHERIY-PGSVVG-SIIVVIGLYILL 321 (364)
Q Consensus 275 ~~~~~s~~~~l~pv~~~~~~~~~l~e~~~-~~~~~G-~~li~~g~~l~~ 321 (364)
.+...+.+..+.|..+..++..+-+--.. +.+++| .++++.|..+..
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888755443333 356666 555667877664
No 160
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=20.37 E-value=6.1e+02 Score=22.49 Aligned_cols=32 Identities=6% Similarity=0.054 Sum_probs=25.2
Q ss_pred CCchHHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 044658 179 DDWAIGSIVLIAFTVVWSSWFLIQARIGKKYP 210 (364)
Q Consensus 179 ~~~~~G~~~~l~a~~~~a~~~i~~k~~~~~~~ 210 (364)
..+..|.+++.+....||.=....|+..+..+
T Consensus 124 ~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkS 155 (243)
T KOG1623|consen 124 RVSVLGIVCAVFNISMFAAPLSVIRKVIKTKS 155 (243)
T ss_pred eeeeeehhhhhhhHHhhhccHHhhhhheecCc
Confidence 35678999999999999988777777766543
Done!