Query 044658
Match_columns 364
No_of_seqs 206 out of 1218
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 09:09:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044658.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044658hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 47.1 72 0.0053 26.2 20.7 18 108-125 191-208 (447)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 28.9 30 0.0022 16.4 2.7 18 182-199 2-19 (27)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 18.4 2.5E+02 0.018 23.2 17.7 50 184-235 282-332 (383)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 10.5 3.7E+02 0.027 21.2 12.8 27 183-210 61-87 (447)
5 d1iwga8 f.35.1.1 (A:513-566,A: 8.3 3.8E+02 0.028 19.8 10.3 28 288-315 95-122 (222)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 7.6 1.4E+02 0.01 14.2 2.3 9 295-303 20-28 (30)
7 d1pv7a_ f.38.1.2 (A:) Lactose 4.2 7.1E+02 0.052 18.6 11.0 32 12-43 15-48 (417)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 3.6 3.3E+02 0.024 13.8 3.1 17 8-24 19-35 (37)
9 d1gl4a1 d.22.1.2 (A:399-631) D 3.5 1.8E+02 0.013 22.4 1.3 37 92-129 43-79 (233)
10 d2iuba2 f.17.3.1 (A:286-349) M 3.1 3.4E+02 0.025 15.5 2.2 10 314-323 51-60 (64)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=47.09 E-value=72 Score=26.23 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=9.1
Q ss_pred chhHHHHHHhhhhccccc
Q 044658 108 IVPVSTFLLALPFRLEKL 125 (364)
Q Consensus 108 ~~pi~~~ll~~~~l~e~~ 125 (364)
...+...++.+++.+|++
T Consensus 191 ~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 191 FCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHHHCCCSS
T ss_pred hhHHHHHHHHHHhcccch
Confidence 344445555555555443
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.87 E-value=30 Score=16.44 Aligned_cols=18 Identities=6% Similarity=0.206 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHhHH
Q 044658 182 AIGSIVLIAFTVVWSSWF 199 (364)
Q Consensus 182 ~~G~~~~l~a~~~~a~~~ 199 (364)
..|.++.-+++++|+.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 468888889999998874
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=18.42 E-value=2.5e+02 Score=23.25 Aligned_cols=50 Identities=4% Similarity=0.075 Sum_probs=28.2
Q ss_pred HHHHHHHHHHH-HHhHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 044658 184 GSIVLIAFTVV-WSSWFLIQARIGKKYPCKYSSTAIMALFGAIQSAVLSLIVE 235 (364)
Q Consensus 184 G~~~~l~a~~~-~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (364)
..+...++++. +-.+..+.+|+ +.+|+.........-+..-.+...++..
T Consensus 282 A~~iG~i~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glfa~ 332 (383)
T d1u7ga_ 282 ALIIGVVAGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIFAA 332 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhhccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHhcC
Confidence 45555554433 33333333343 3457888877777777766666665543
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.47 E-value=3.7e+02 Score=21.24 Aligned_cols=27 Identities=7% Similarity=0.199 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhccCC
Q 044658 183 IGSIVLIAFTVVWSSWFLIQARIGKKYP 210 (364)
Q Consensus 183 ~G~~~~l~a~~~~a~~~i~~k~~~~~~~ 210 (364)
.|.+.. ...+.+++..+..-++.++.+
T Consensus 61 ~g~~~s-~~~~~~~~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 61 LGFALS-GISIAYGFSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence 444333 334455555555666666654
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.32 E-value=3.8e+02 Score=19.77 Aligned_cols=28 Identities=11% Similarity=-0.102 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCccchhhHHHHHHHH
Q 044658 288 IFVAIVGFFILHERIYPGSVVGSIIVVI 315 (364)
Q Consensus 288 v~~~~~~~~~l~e~~~~~~~~G~~li~~ 315 (364)
+.+.+.+..+.+.+++....+|.++.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 3445556667899999988888776443
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.59 E-value=1.4e+02 Score=14.21 Aligned_cols=9 Identities=11% Similarity=0.025 Sum_probs=4.9
Q ss_pred HHHhcCCcc
Q 044658 295 FFILHERIY 303 (364)
Q Consensus 295 ~~~l~e~~~ 303 (364)
.++++|++.
T Consensus 20 aiffreppr 28 (30)
T d2axtt1 20 AIFFREPPR 28 (30)
T ss_dssp HHHTSCCCC
T ss_pred HHHhcCCCC
Confidence 345666654
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.24 E-value=7.1e+02 Score=18.63 Aligned_cols=32 Identities=6% Similarity=-0.052 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHh-cCCChHHHHHH
Q 044658 12 MMVAVNLGLAAANALLKK-ILD-GGLNHLVIVAY 43 (364)
Q Consensus 12 ~~~l~~~~~~~~~~~~k~-~~~-~~~~p~~~~~~ 43 (364)
..++..+.++...++.-. ..+ .+.++.++..+
T Consensus 15 ~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i 48 (417)
T d1pv7a_ 15 FFFFYFFIMGAYFPFFPIWLHDINHISKSDTGII 48 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHH
Confidence 344555555555444332 323 25777665544
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.60 E-value=3.3e+02 Score=13.79 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044658 8 KPIIMMVAVNLGLAAAN 24 (364)
Q Consensus 8 ~~~l~~~l~~~~~~~~~ 24 (364)
+|.++++..+++++..+
T Consensus 19 ~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 19 LGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 46666666666666543
No 9
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.49 E-value=1.8e+02 Score=22.36 Aligned_cols=37 Identities=11% Similarity=0.300 Sum_probs=28.5
Q ss_pred HhccccCcceeehcccchhHHHHHHhhhhccccccccc
Q 044658 92 LGFEYTTAAFSCAFINIVPVSTFLLALPFRLEKLNMKS 129 (364)
Q Consensus 92 ~al~~~~~~~~~~l~~~~pi~~~ll~~~~l~e~~~~~~ 129 (364)
.|+..+|++....+..+.|+... ++|+|-+|.-....
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~~a~N 79 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQDGFKN 79 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECTTCCC
T ss_pred EEccCCChhHhhhhhhhhhhcCc-eeeeEEeecCCccC
Confidence 35677888888888888887655 59999888877665
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=3.11 E-value=3.4e+02 Score=15.49 Aligned_cols=10 Identities=20% Similarity=0.467 Sum_probs=3.8
Q ss_pred HHhhhhheec
Q 044658 314 VIGLYILLWG 323 (364)
Q Consensus 314 ~~g~~l~~~~ 323 (364)
+.++.++.+.
T Consensus 51 ~~~~~~~~~f 60 (64)
T d2iuba2 51 VIAVIMVVYF 60 (64)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHH
Confidence 3333333333
Done!