BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044659
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F9K|A Chain A, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|B Chain B, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|E Chain E, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|F Chain F, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|I Chain I, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|J Chain J, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|M Chain M, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|N Chain N, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|Q Chain Q, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|R Chain R, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|U Chain U, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|V Chain V, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|Y Chain Y, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|Z Chain Z, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|CC Chain c, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|DD Chain d, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|GG Chain g, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|HH Chain h, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|KK Chain k, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|LL Chain l, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|OO Chain o, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|PP Chain p, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|SS Chain s, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
pdb|3F9K|TT Chain t, Two Domain Fragment Of Hiv-2 Integrase In Complex With
Ledgf Ibd
Length = 210
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 69 AHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQF 122
+H GIP VA ++N C C+ +G E++H + LGTW+ D +E +
Sbjct: 24 SHKFGIPNLVAR--QIVNSCAQCQQKG--EAIHGQVNAELGTWQMDCTHLEGKI 73
>pdb|4HN0|A Chain A, Crystal Structure Of Chmj, A 3'-Monoepimerase Apoenzyme
From Streptomyces Bikiniensis
pdb|4HN0|B Chain B, Crystal Structure Of Chmj, A 3'-Monoepimerase Apoenzyme
From Streptomyces Bikiniensis
pdb|4HN0|C Chain C, Crystal Structure Of Chmj, A 3'-Monoepimerase Apoenzyme
From Streptomyces Bikiniensis
pdb|4HN0|D Chain D, Crystal Structure Of Chmj, A 3'-Monoepimerase Apoenzyme
From Streptomyces Bikiniensis
Length = 198
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 47 LGHKFDVIGISILTYLFGLVSNAHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMV 106
GH F V +++ G + H+T IP G A Y + R GA + D+ +
Sbjct: 37 FGHDFPVAQVNVAVSHRGALRGIHYTEIPPGQA------KYSVCVR--GAGLDVVVDVRI 88
Query: 107 ---HLGTWEFDPMEMENQFPNNEESVYLCQG 134
G WE PM+ E +VYL G
Sbjct: 89 GSPTFGRWEIVPMDAERN-----TAVYLTAG 114
>pdb|4HMZ|A Chain A, Crystal Structure Of Chmj, A 3'-Monoepimerase From
Streptomyces Bikiniensis In Complex With Dtdp-Quinovose
pdb|4HMZ|B Chain B, Crystal Structure Of Chmj, A 3'-Monoepimerase From
Streptomyces Bikiniensis In Complex With Dtdp-Quinovose
pdb|4HMZ|C Chain C, Crystal Structure Of Chmj, A 3'-Monoepimerase From
Streptomyces Bikiniensis In Complex With Dtdp-Quinovose
pdb|4HMZ|D Chain D, Crystal Structure Of Chmj, A 3'-Monoepimerase From
Streptomyces Bikiniensis In Complex With Dtdp-Quinovose
Length = 200
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 47 LGHKFDVIGISILTYLFGLVSNAHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMV 106
GH F V +++ G + H+T IP G A Y + R GA + D+ +
Sbjct: 37 FGHDFPVAQVNVAVSHRGALRGIHYTEIPPGQA------KYSVCVR--GAGLDVVVDVRI 88
Query: 107 ---HLGTWEFDPMEMENQFPNNEESVYLCQG 134
G WE PM+ E +VYL G
Sbjct: 89 GSPTFGRWEIVPMDAERN-----TAVYLTAG 114
>pdb|4HN1|A Chain A, Crystal Structure Of H60nY130F DOUBLE MUTANT OF CHMJ, A
3'- Monoepimerase From Streptomyces Bikiniensis In
Complex With Dtdp
pdb|4HN1|B Chain B, Crystal Structure Of H60nY130F DOUBLE MUTANT OF CHMJ, A
3'- Monoepimerase From Streptomyces Bikiniensis In
Complex With Dtdp
pdb|4HN1|C Chain C, Crystal Structure Of H60nY130F DOUBLE MUTANT OF CHMJ, A
3'- Monoepimerase From Streptomyces Bikiniensis In
Complex With Dtdp
pdb|4HN1|D Chain D, Crystal Structure Of H60nY130F DOUBLE MUTANT OF CHMJ, A
3'- Monoepimerase From Streptomyces Bikiniensis In
Complex With Dtdp
Length = 201
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 47 LGHKFDVIGISILTYLFGLVSNAHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMV 106
GH F V +++ G + ++T IP G A Y + R GA + D+ +
Sbjct: 37 FGHDFPVAQVNVAVSHRGALRGINYTEIPPGQA------KYSVCVR--GAGLDVVVDVRI 88
Query: 107 ---HLGTWEFDPMEMENQFPNNEESVYLCQG 134
G WE PM+ E +VYL G
Sbjct: 89 GSPTFGRWEIVPMDAERN-----TAVYLTAG 114
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 12 VLTFDRTGYGESDPKPKRPVKIEAFDIQELANQLNLGHKFDVIG 55
VL F +GES+P+P + ++E+F + + HK ++G
Sbjct: 74 VLAFPCNQFGESEPRPSK--EVESFARKNYGVTFPIFHKIKILG 115
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 12 VLTFDRTGYGESDPKPKRPVKIEAFDIQELANQLNLGHKFDVIG 55
VL F +GES+P+P + ++E+F + + HK ++G
Sbjct: 83 VLAFPCNQFGESEPRPSK--EVESFARKNYGVTFPIFHKIKILG 124
>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|3E2Y|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
pdb|3E2Y|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
Length = 410
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 111 WEFDPMEMENQFPNNEESVYLCQGH 135
W FDP E+E++F + +++ L H
Sbjct: 153 WTFDPRELESKFSSKTKAIILNTPH 177
>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2F|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2Z|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|2ZJG|A Chain A, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
pdb|2ZJG|B Chain B, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
Length = 410
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 111 WEFDPMEMENQFPNNEESVYLCQGH 135
W FDP E+E++F + +++ L H
Sbjct: 153 WTFDPRELESKFSSKTKAIILNTPH 177
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 3 DFMDELGVYVLTFDRTGYGESD-PKPKRPVKIEAFDIQELANQLNLGHKFDVIGISI 58
+++ G + FDR G+G SD P A DI +L L+L + ++G S+
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSM 95
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 3 DFMDELGVYVLTFDRTGYGESD-PKPKRPVKIEAFDIQELANQLNLGHKFDVIGISI 58
+++ G + FDR G+G SD P A DI +L L+L + ++G S+
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSM 95
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 3 DFMDELGVYVLTFDRTGYGESD-PKPKRPVKIEAFDIQELANQLNLGHKFDVIGISI 58
+++ G + FDR G+G SD P A DI +L L+L + ++G S+
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSM 95
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In
P. Fluorescens Esterase
Length = 271
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 3 DFMDELGVYVLTFDRTGYGESD-PKPKRPVKIEAFDIQELANQLNLGHKFDVIGISI 58
+++ G + FDR G+G SD P A DI +L L+L + ++G S+
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSM 95
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS
ESTERASE
Length = 271
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 3 DFMDELGVYVLTFDRTGYGESD-PKPKRPVKIEAFDIQELANQLNLGHKFDVIGISI 58
+++ G + FDR G+G SD P A DI +L L+L + ++G S+
Sbjct: 40 EYLSSRGYRTIAFDRRGFGRSDQPWTGNDYDTFADDIAQLIEHLDL-KEVTLVGFSM 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,561,230
Number of Sequences: 62578
Number of extensions: 219763
Number of successful extensions: 309
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 17
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)