BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044659
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P12451|POL_HV2SB Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate SBLISY) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 36.6 bits (83), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 69 AHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQF 122
AH G+P VA ++N C C+ +G E++H + LGTW+ D +E +
Sbjct: 1192 AHKFGLPNLVAR--QIVNTCAQCQQKG--EAIHGQVNAELGTWQMDCTHLEGKI 1241
>sp|P04584|POL_HV2RO Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate ROD) GN=gag-pol PE=1 SV=3
Length = 1464
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 69 AHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQF 122
+H GIP VA ++N C C+ +G E++H + LGTW+ D +E +
Sbjct: 1194 SHKFGIPNLVAR--QIVNSCAQCQQKG--EAIHGQVNAELGTWQMDCTHLEGKI 1243
>sp|P20876|POL_HV2ST Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate ST) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 69 AHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQF 122
+H G+P VA ++N C C+ +G E++H + LGTW+ D +E +
Sbjct: 1193 SHKFGLPKLVAR--QIVNTCTQCQQKG--EAIHGQVNAELGTWQMDCTHLEGKI 1242
>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate KR) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 69 AHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQF 122
+H G+P VA ++N C C+ +G E++H + LGTW+ D +E +
Sbjct: 1193 SHKFGLPKLVAR--QIVNTCAQCQQKG--EAIHGQVDAELGTWQMDCTHLEGKI 1242
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate D205) GN=gag-pol PE=3 SV=3
Length = 1465
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 70 HHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQF 122
H GIP VA ++N C C+ +G E++H + LGTW+ D +E +
Sbjct: 1193 HKFGIPQLVAK--QIVNSCDKCQQKG--EAIHGQVNADLGTWQMDCTHLEGKI 1241
>sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate EHO) GN=gag-pol PE=3 SV=3
Length = 1464
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 70 HHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQ 121
H GIP VA ++N C C+ +G E++H + LGTW+ D +E +
Sbjct: 1192 HKFGIPQLVAR--QIVNSCDKCQQKG--EAIHGQVNSELGTWQMDCTHLEGK 1239
>sp|Q76634|POL_HV2UC Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate UC1) GN=gag-pol PE=3 SV=3
Length = 1471
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 70 HHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQ 121
H G+P VA ++N C C+ +G E++H + LGTW+ D +E +
Sbjct: 1194 HKFGLPQLVAK--QIVNSCDKCQQKG--EAVHGQVNAELGTWQMDCTHLEGK 1241
>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate D194) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 69 AHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQF 122
H GIP VA ++N C C+ +G E++H + +G W+ D +E +
Sbjct: 1192 THKFGIPQLVAR--QIVNTCAQCQQKG--EAIHGQVNAEIGVWQMDCTHLEGKI 1241
>sp|P18042|POL_HV2G1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate Ghana-1) GN=gag-pol PE=1 SV=4
Length = 1464
Score = 33.1 bits (74), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 69 AHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQF 122
H GIP VA ++N C C+ +G E++H + +G W+ D +E +
Sbjct: 1194 THKFGIPQLVAR--QIVNTCAQCQQKG--EAIHGQVNAEIGVWQMDCTHLEGKI 1243
>sp|P18096|POL_HV2BE Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate BEN) GN=gag-pol PE=3 SV=4
Length = 1550
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 69 AHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQF 122
H GIP VA ++N C C+ +G E++H + +G W+ D +E +
Sbjct: 1193 THKFGIPLLVAR--QIVNSCAQCQQKG--EAIHGQVNAEIGVWQMDYTHLEGKI 1242
>sp|P05962|POL_HV2NZ Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate NIH-Z) GN=gag-pol PE=3 SV=3
Length = 1461
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 69 AHHTGIPAGVALVVLVINYCITCRLQGAHESLHRDIMVHLGTWEFDPMEMENQ 121
+H GIP VA ++N C + +G E++H + LGTW+ D +E +
Sbjct: 1191 SHKFGIPKLVAR--QIVNTCAHVQQKG--EAIHGQVNAELGTWQMDCTHLEGK 1239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,709,277
Number of Sequences: 539616
Number of extensions: 2774936
Number of successful extensions: 4892
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4889
Number of HSP's gapped (non-prelim): 20
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)