BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044660
         (159 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q67YC9|Y4141_ARATH Uncharacterized protein At4g14100 OS=Arabidopsis thaliana
           GN=At4g14100 PE=2 SV=1
          Length = 206

 Score =  163 bits (412), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 94/126 (74%), Gaps = 1/126 (0%)

Query: 26  PVPTPWPERFHALTYKNLSSDGLQIADQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSF 85
           PVPTPWP +FHAL + N S D L + D WYDW  GRN  IIQ+QL  + Y++EWNNGTSF
Sbjct: 28  PVPTPWPHQFHALMFMNYSGD-LSMIDLWYDWTNGRNFNIIQEQLGGITYDLEWNNGTSF 86

Query: 86  YYTLGENGTCDVVHYGIGIPRPDFLDEATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKK 145
           +YTL E+ +C      +GI RP++LD A YLG +   GFLCN+WEK+DFIWYYEDV+TK+
Sbjct: 87  FYTLDESKSCRSGQLEVGILRPNWLDGAKYLGQQNVSGFLCNVWEKVDFIWYYEDVETKR 146

Query: 146 PIRWDF 151
           P++W F
Sbjct: 147 PVQWIF 152


>sp|P06946|CAPSD_WDVS Capsid protein OS=Wheat dwarf virus (isolate Sweden) GN=V1 PE=3
           SV=1
          Length = 260

 Score = 34.3 bits (77), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 8/76 (10%)

Query: 13  ILALPWLQFCETVPVPTPWPERFHALTYK---NLSSDGLQIA----DQWYDWPRGRNVYI 65
           I  +PW     T  V   W  RF  +  K   NL +DG ++     DQ Y+W  G+N+  
Sbjct: 135 IFTMPWNLLPSTWTVQRAWSHRF-VVKRKWTVNLVTDGRKVGSKTVDQRYNWVVGKNIVD 193

Query: 66  IQKQLSDLLYNVEWNN 81
             K    L    EW N
Sbjct: 194 ANKFFKGLRVTTEWMN 209


>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 /
           DSM 9485) GN=pth PE=3 SV=1
          Length = 188

 Score = 33.9 bits (76), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 9/91 (9%)

Query: 39  TYKNLSSDGLQIADQWYDWPRGRNVYIIQKQL----SDLLYNVEWNNGT--SFYYTLGEN 92
           TY NLS   +    QWY     R + +I   L    + L      + GT       +G+ 
Sbjct: 63  TYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL 122

Query: 93  GTCDV--VHYGIGIPRPDFLDEATYLGTRFT 121
           GT +   +  GIG P P  +D A Y+ +RFT
Sbjct: 123 GTTEFPRLRIGIGQP-PGQMDAADYVLSRFT 152


>sp|P50528|PLO1_SCHPO Serine/threonine-protein kinase plo1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=plo1 PE=1 SV=1
          Length = 683

 Score = 32.7 bits (73), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 36  HALTYKNLSSDGLQIADQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGTC 95
           HALT ++  S+ +    +W D+    N Y +  QLSD    V +N+ TS  ++  E    
Sbjct: 479 HALTSEDADSEPVLFITKWVDY---SNKYGLGYQLSDESVGVHFNDDTSLLFSADE---- 531

Query: 96  DVVHYGI 102
           +VV Y +
Sbjct: 532 EVVEYAL 538


>sp|C5CFR9|PTH_KOSOT Peptidyl-tRNA hydrolase OS=Kosmotoga olearia (strain TBF 19.5.1)
           GN=pth PE=3 SV=1
          Length = 190

 Score = 31.6 bits (70), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 93  GTCDVVHYGIGI-PRPDFLDEATYLGTRFTDGFLCNLWEKLDF 134
           GT +     IGI P+PD +D  +Y+   FTD  L  LW+ LD 
Sbjct: 122 GTQEFSRIRIGIGPKPDDIDMVSYVLGEFTDSELKVLWKVLDL 164


>sp|Q2W9C3|KGUA_MAGSA Guanylate kinase OS=Magnetospirillum magneticum (strain AMB-1 /
           ATCC 700264) GN=gmk PE=3 SV=1
          Length = 214

 Score = 30.8 bits (68), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 33  ERFHALTYKNLSSDGLQIADQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGEN 92
           E+FH +  K    +  ++ D +Y  PRG  V  I +   D+L++++W  GT     + +N
Sbjct: 66  EKFHEMVEKREFLEHARVFDNFYGTPRG-PVDEILRSGRDVLFDIDW-QGTQ---QMAQN 120

Query: 93  GTCDVV 98
              D+V
Sbjct: 121 ARADLV 126


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.143    0.485 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,793,287
Number of Sequences: 539616
Number of extensions: 2948784
Number of successful extensions: 4631
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4627
Number of HSP's gapped (non-prelim): 10
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)