Query 044660
Match_columns 159
No_of_seqs 53 out of 55
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 09:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bmz_A Putative uncharacterize 53.4 13 0.00044 30.5 3.9 48 102-150 107-161 (199)
2 2v8i_A Pectate lyase; periplas 38.7 10 0.00035 35.2 1.2 19 140-158 35-53 (543)
3 3buu_A Uncharacterized LOLA su 36.5 45 0.0015 24.9 4.4 43 112-154 116-166 (229)
4 3bk5_A Putative outer membrane 35.9 41 0.0014 25.5 4.1 42 112-153 125-174 (237)
5 3m4w_A Sigma-E factor regulato 26.7 63 0.0022 26.7 4.1 108 45-154 29-152 (295)
6 3usa_D HLA class II histocompa 13.9 76 0.0026 24.6 1.7 38 106-143 1-43 (189)
7 1bmw_A PHL P II, pollen allerg 13.7 64 0.0022 22.9 1.2 17 102-118 79-95 (96)
8 3hrd_A Nicotinate dehydrogenas 12.1 62 0.0021 27.8 0.8 11 142-152 257-267 (425)
9 3s79_A Cytochrome P450 19A1; o 11.1 82 0.0028 25.3 1.1 10 24-33 46-55 (503)
10 3plv_C 66 kDa U4/U6.U5 small n 10.8 89 0.003 17.2 0.9 9 63-71 7-15 (21)
No 1
>3bmz_A Putative uncharacterized protein; violacein, biosynthetic protein; HET: PG4 PGE; 1.21A {Chromobacterium violaceum} PDB: 2zf3_A 2zf4_A*
Probab=53.43 E-value=13 Score=30.45 Aligned_cols=48 Identities=25% Similarity=0.220 Sum_probs=41.4
Q ss_pred cCCCCCCcc--ccceecCeeeeCceeeeccc-----ccCeeeEeeecccCCceeEE
Q 044660 102 IGIPRPDFL--DEATYLGTRFTDGFLCNLWE-----KLDFIWYYEDVQTKKPIRWD 150 (159)
Q Consensus 102 vGiL~PdWL--~gAtYlG~~~v~Gf~C~vWe-----K~dfi~YYEdv~t~rPV~W~ 150 (159)
.=+|+.+=| -+|.|.|+++|=|..-..|- |.. .+||=+..|+++||=+
T Consensus 107 eLfLpq~vL~~~~Ar~~Gr~tVLG~~ad~W~~qRpgK~p-s~~Yl~ag~n~llRMv 161 (199)
T 3bmz_A 107 ELFLPRDVLRRLGARHIGRRVVLGREADGWRYQRPGKGP-STLYLDAASGTPLRMV 161 (199)
T ss_dssp SCSSCTTHHHHTTCEEEEEEEETTEEEEEEEEEETTTEE-EEEEEETTTCCEEEEE
T ss_pred HHhccHHHHHhccccccceeeeeccccceeeeecCCCCC-eeEEEEcCCCeEEEEe
Confidence 348999988 39999999999999999995 444 8999999999999854
No 2
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=38.67 E-value=10 Score=35.24 Aligned_cols=19 Identities=26% Similarity=0.643 Sum_probs=17.0
Q ss_pred ecccCCceeEEecCCcccc
Q 044660 140 DVQTKKPIRWDFSDDQNLI 158 (159)
Q Consensus 140 dv~t~rPV~W~F~~G~~~~ 158 (159)
|+.|+.||.|+|-+|+.+.
T Consensus 35 D~~t~~pV~W~~pdg~~~~ 53 (543)
T 2v8i_A 35 DPRTGQQLEWIFPDGRRAV 53 (543)
T ss_dssp CTTTCCBCEEECTTSCEEE
T ss_pred ccCCCCceeeeCCCCCccc
Confidence 7899999999999998764
No 3
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718}
Probab=36.46 E-value=45 Score=24.94 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=35.0
Q ss_pred cceecCeeeeCceeeeccc---ccC---e--eeEeeecccCCceeEEecCC
Q 044660 112 EATYLGTRFTDGFLCNLWE---KLD---F--IWYYEDVQTKKPIRWDFSDD 154 (159)
Q Consensus 112 gAtYlG~~~v~Gf~C~vWe---K~d---f--i~YYEdv~t~rPV~W~F~~G 154 (159)
..+++|.+.++|..|.|=+ |.+ + ..+|=|..|..|++-.+|+.
T Consensus 116 ~~~l~g~~~v~g~~~~vl~~~pk~~~~~y~k~~lwiD~~t~~p~k~~~~d~ 166 (229)
T 3buu_A 116 HPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKAEFYSV 166 (229)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESSTTSSCSEEEEEEETTTCCEEEEEEECT
T ss_pred ceEEeeeeeeCCeeEEEEEEEecCCCCceEEEEEEEECCCCcEEEEEEEcC
Confidence 4578999999999998876 222 2 67899999999999999963
No 4
>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633}
Probab=35.87 E-value=41 Score=25.47 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=34.9
Q ss_pred cceecCeeeeCceeeeccc---ccC---e--eeEeeecccCCceeEEecC
Q 044660 112 EATYLGTRFTDGFLCNLWE---KLD---F--IWYYEDVQTKKPIRWDFSD 153 (159)
Q Consensus 112 gAtYlG~~~v~Gf~C~vWe---K~d---f--i~YYEdv~t~rPV~W~F~~ 153 (159)
..+++|++.++|..|.|=+ |.+ + +.+|=|..|..|++-.+|+
T Consensus 125 ~~~l~g~~~~~g~~~~vl~~~pk~~~~~y~k~~~wiD~~t~~~~k~~~~d 174 (237)
T 3bk5_A 125 RFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLDKAHYRPLKVEFYD 174 (237)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESCTTSSEEEEEEEEETTTCCEEEEEEEE
T ss_pred ceEEeeeeEECCeeEEEEEEEECCCCCCceEEEEEEECCCCeEEEEEEEc
Confidence 4688999999999998876 222 2 6789999999999999996
No 5
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=26.73 E-value=63 Score=26.72 Aligned_cols=108 Identities=13% Similarity=0.083 Sum_probs=66.8
Q ss_pred CCCcceeeeeecCCCCcchhhhhhhhccceeeeEecCceeEEEEcCCCCeeeeeec-CcCCCCCC---ccc------cce
Q 044660 45 SDGLQIADQWYDWPRGRNVYIIQKQLSDLLYNVEWNNGTSFYYTLGENGTCDVVHY-GIGIPRPD---FLD------EAT 114 (159)
Q Consensus 45 ~G~lq~~dlyYDwp~gRn~niIq~QLg~~lYd~Ew~NgTsfyy~l~~~~~Cr~~~~-~vGiL~Pd---WL~------gAt 114 (159)
++.++-..+.--..+|.-+..+....|.+ -.+.-.|+...||.++ .+.+.+..- .++.+++- .++ ..+
T Consensus 29 ~~~i~s~ri~H~~~~~~~~e~L~~LdG~~-reviR~~~~v~~~~p~-~~~~~~~~~~~~~~~p~~l~~~~~~l~~~Y~~~ 106 (295)
T 3m4w_A 29 KQGVESLRYRHARLDNRPLAQLLQMDGPR-REVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI 106 (295)
T ss_dssp TTEEEEEEEEEEECSSSEEEEEEECSSSC-CEEEEETTEEEEECTT-SCCEEEECSSCTTSSCGGGGCCHHHHTTTEEEE
T ss_pred CCeEEEEEEEEEeeCCEEEEEEEEcCCCc-EEEEEECCEEEEEcCC-CceEEEecccccccCccccccChhHHhhCceEE
Confidence 45555555554455555555554444533 2233346677777744 345555444 33443322 221 567
Q ss_pred ecCeeeeCceeeeccc---ccCe---eeEeeecccCCceeEEecCC
Q 044660 115 YLGTRFTDGFLCNLWE---KLDF---IWYYEDVQTKKPIRWDFSDD 154 (159)
Q Consensus 115 YlG~~~v~Gf~C~vWe---K~df---i~YYEdv~t~rPV~W~F~~G 154 (159)
.+|+++++|..|.|=+ |.++ .+.|=|..|+-|+|-.+++.
T Consensus 107 ~~g~erVaGr~~~vv~l~PkD~~ry~y~lWiD~et~lpLk~e~~d~ 152 (295)
T 3m4w_A 107 SVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDR 152 (295)
T ss_dssp EEEEEEETTEEEEEEEEEETTSCSCEEEEEEETTTCCEEEEEEECT
T ss_pred EcCceEECCeEEEEEEEEECCCCceeEEEEEEccCCCEEEEEEEcC
Confidence 7999999999999986 4442 35589999999999999974
No 6
>3usa_D HLA class II histocompatibility antigen, DO beta; MHC class II fold, antigen presentation enzyme and inhibitor system; HET: NAG MAN PGE; 3.20A {Homo sapiens}
Probab=13.89 E-value=76 Score=24.57 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=29.5
Q ss_pred CCCccc----ccee-cCeeeeCceeeecccccCeeeEeeeccc
Q 044660 106 RPDFLD----EATY-LGTRFTDGFLCNLWEKLDFIWYYEDVQT 143 (159)
Q Consensus 106 ~PdWL~----gAtY-lG~~~v~Gf~C~vWeK~dfi~YYEdv~t 143 (159)
||++|- +-.| -|+|.|.++.=+...+.||+.|=.|+.+
T Consensus 1 ~p~f~~q~~~~C~f~ngTe~Vr~~~ry~Yngedfi~FDsd~g~ 43 (189)
T 3usa_D 1 RPDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDSDVGM 43 (189)
T ss_dssp CCCCEEEEEEEEEEETTTTEEEEEEEEEETTEEEEEEETTTCS
T ss_pred CCceeEEEEEEEEEECCCEEEEEEEEEeECCceEEEEeCCCCc
Confidence 566662 3344 4888899999999999999999888765
No 7
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A
Probab=13.75 E-value=64 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=14.6
Q ss_pred cCCCCCCccccceecCe
Q 044660 102 IGIPRPDFLDEATYLGT 118 (159)
Q Consensus 102 vGiL~PdWL~gAtYlG~ 118 (159)
..++|.+|-.|++|-+.
T Consensus 79 ~nViP~~W~~G~ty~~~ 95 (96)
T 1bmw_A 79 DDVVPEKYTIGATYAPE 95 (96)
T ss_dssp SSCSCSSCCSSSCCCC-
T ss_pred eeEeCCCCCCCCEEeCC
Confidence 56999999999999874
No 8
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=12.06 E-value=62 Score=27.82 Aligned_cols=11 Identities=45% Similarity=0.564 Sum_probs=9.1
Q ss_pred ccCCceeEEec
Q 044660 142 QTKKPIRWDFS 152 (159)
Q Consensus 142 ~t~rPV~W~F~ 152 (159)
.+||||||...
T Consensus 257 ~~grPVk~~~t 267 (425)
T 3hrd_A 257 HTKKPVKMVRS 267 (425)
T ss_dssp HHCSCEEEECC
T ss_pred HhCCCEEEEee
Confidence 47999999873
No 9
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=11.14 E-value=82 Score=25.32 Aligned_cols=10 Identities=20% Similarity=0.271 Sum_probs=8.0
Q ss_pred CCCCCCCCch
Q 044660 24 TVPVPTPWPE 33 (159)
Q Consensus 24 ~~P~PppWP~ 33 (159)
.+|-|++||-
T Consensus 46 ~pPGP~~~P~ 55 (503)
T 3s79_A 46 SIPGPGYCMG 55 (503)
T ss_dssp CCCSCCCCSS
T ss_pred CCCCCCCCce
Confidence 5788889985
No 10
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=10.77 E-value=89 Score=17.16 Aligned_cols=9 Identities=11% Similarity=0.165 Sum_probs=7.1
Q ss_pred hhhhhhhhc
Q 044660 63 VYIIQKQLS 71 (159)
Q Consensus 63 ~niIq~QLg 71 (159)
-|-||.|||
T Consensus 7 tnk~r~~lG 15 (21)
T 3plv_C 7 TNELRASLG 15 (26)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 367889988
Done!