Query 044660
Match_columns 159
No_of_seqs 53 out of 55
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 09:12:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044660.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044660hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sg1x1 g.24.1.1 (X:2-56) Low 31.2 2.5 0.00018 27.0 -1.4 21 87-108 8-28 (55)
2 d1h8ga_ b.109.1.1 (A:) Choline 25.9 33 0.0024 21.9 3.6 55 80-148 1-57 (95)
3 d2acaa1 d.63.1.2 (A:8-181) Put 23.8 11 0.00079 26.0 0.8 30 32-61 15-47 (174)
4 d2gdga1 d.80.1.3 (A:1-114) Mic 17.3 26 0.0019 23.1 1.6 23 63-85 80-113 (114)
5 d1ki0a1 g.14.1.1 (A:81-163) Pl 16.5 20 0.0015 22.6 0.8 23 111-133 8-32 (83)
6 d1dypa_ b.29.1.2 (A:) kappa-Ca 16.1 1E+02 0.0076 21.3 4.9 15 74-88 194-209 (271)
7 d1i1ca1 b.1.1.2 (A:239-341) Im 15.6 19 0.0014 22.9 0.5 9 93-101 81-89 (103)
8 d2f2ha3 b.71.1.4 (A:586-665) P 15.2 31 0.0023 21.6 1.5 19 52-70 5-23 (80)
9 d1emxa_ g.3.6.2 (A:) Heteropda 15.1 22 0.0016 19.9 0.6 14 120-133 16-29 (30)
10 d1hfoa_ d.80.1.3 (A:) Micropha 14.5 34 0.0025 22.4 1.6 23 63-85 80-113 (113)
No 1
>d1sg1x1 g.24.1.1 (X:2-56) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=31.17 E-value=2.5 Score=27.00 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=17.4
Q ss_pred EEcCCCCeeeeeecCcCCCCCC
Q 044660 87 YTLGENGTCDVVHYGIGIPRPD 108 (159)
Q Consensus 87 y~l~~~~~Cr~~~~~vGiL~Pd 108 (159)
|+ .+..+|..+..+.|+.+|=
T Consensus 8 yt-~sGeCCs~C~~GeGV~~pC 28 (55)
T d1sg1x1 8 YT-HSGECCKACNLGEGVAQPC 28 (55)
T ss_dssp BC-TTSCBCCCBCTTEEEEECS
T ss_pred cc-cCCceeccCCCCCceeecc
Confidence 44 4677999999999999884
No 2
>d1h8ga_ b.109.1.1 (A:) Choline binding domain of autolysin C-LytA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=25.89 E-value=33 Score=21.87 Aligned_cols=55 Identities=18% Similarity=0.451 Sum_probs=35.5
Q ss_pred cCceeEEEEcCCCCeeeeeecCcCCCCCCccc--cceecCeeeeCceeeecccccCeeeEeeecccCCcee
Q 044660 80 NNGTSFYYTLGENGTCDVVHYGIGIPRPDFLD--EATYLGTRFTDGFLCNLWEKLDFIWYYEDVQTKKPIR 148 (159)
Q Consensus 80 ~NgTsfyy~l~~~~~Cr~~~~~vGiL~PdWL~--gAtYlG~~~v~Gf~C~vWeK~dfi~YYEdv~t~rPV~ 148 (159)
+||.-|||+ +. |.+.=.|.. |..|.=.+ +|.....|.+.+--+||=|..++..++
T Consensus 1 ~dG~wYy~d--~~----------G~~~tGw~~i~g~wYyfd~--~G~m~tGw~~~~g~~YYf~~~~G~~~~ 57 (95)
T d1h8ga_ 1 TDGNWYWFD--NS----------GEMATGWKKIADKWYYFNE--EGAMKTGWVKYKDTWYYLDAKEGAMVS 57 (95)
T ss_dssp CCEEEEEEE--TT----------CCBCCEEEEETTEEEEECT--TSCBCCEEEEETTEEEEECTTTCCBCC
T ss_pred CCCcEEEEC--CC----------CCEEEeeEEECCEEEEECC--CCCeEEeEEEECCeEEEEECCCCcEee
Confidence 366767776 21 333335663 55544222 577788888888889998888887765
No 3
>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]}
Probab=23.79 E-value=11 Score=25.95 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=20.8
Q ss_pred chhHHHHhhhccC---CCCcceeeeeecCCCCc
Q 044660 32 PERFHALTYKNLS---SDGLQIADQWYDWPRGR 61 (159)
Q Consensus 32 P~qFHa~l~~N~~---~G~lq~~dlyYDwp~gR 61 (159)
|+.+++++-..-. .+..+..|.|||.|+++
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~q~d~Yfd~p~~~ 47 (174)
T d2acaa1 15 HDAFLNMVKQIEHEVMFENNQESDWFYDTPQRT 47 (174)
T ss_dssp HHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCH
T ss_pred HHHHHHHHHHcCCccccceEEEEEEEEECCCCc
Confidence 5677888776511 23456789999999763
No 4
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.27 E-value=26 Score=23.14 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=15.1
Q ss_pred hhhhhhhhc---ccee----eeE---e-cCceeE
Q 044660 63 VYIIQKQLS---DLLY----NVE---W-NNGTSF 85 (159)
Q Consensus 63 ~niIq~QLg---~~lY----d~E---w-~NgTsf 85 (159)
.++|+.+|| +..| |++ | .|||+|
T Consensus 80 ~~~l~~~LgI~~~RiyI~f~d~~~~~~G~nG~TF 113 (114)
T d2gdga1 80 CGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 113 (114)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHhCCCcceEEEEEEECCHHHeeECcEeC
Confidence 456888886 3444 554 6 788876
No 5
>d1ki0a1 g.14.1.1 (A:81-163) Plasminogen {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.49 E-value=20 Score=22.61 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=19.4
Q ss_pred ccceecCeeee--CceeeecccccC
Q 044660 111 DEATYLGTRFT--DGFLCNLWEKLD 133 (159)
Q Consensus 111 ~gAtYlG~~~v--~Gf~C~vWeK~d 133 (159)
.|+.|.|+..+ +|..|--|....
T Consensus 8 ~G~~YrG~~s~T~sG~~C~~W~~~~ 32 (83)
T d1ki0a1 8 NGKNYRGTMSKTKNGITCQKWSSTS 32 (83)
T ss_dssp TCTTCCCCCCBCTTSCBBCCTTCCS
T ss_pred CCCCCeecceeCCCCCccCCCccCC
Confidence 48899999865 999999998653
No 6
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]}
Probab=16.06 E-value=1e+02 Score=21.35 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=11.1
Q ss_pred eeeeEecCce-eEEEE
Q 044660 74 LYNVEWNNGT-SFYYT 88 (159)
Q Consensus 74 lYd~Ew~NgT-sfyy~ 88 (159)
.|-+||+... .||++
T Consensus 194 ~Y~v~W~~~~i~fyvD 209 (271)
T d1dypa_ 194 TYGVNVTKDKITWYVD 209 (271)
T ss_dssp EEEEEECSSEEEEEET
T ss_pred EEEEEEeCCEEEEEEc
Confidence 5789996554 88877
No 7
>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.56 E-value=19 Score=22.86 Aligned_cols=9 Identities=22% Similarity=0.165 Sum_probs=7.1
Q ss_pred CeeeeeecC
Q 044660 93 GTCDVVHYG 101 (159)
Q Consensus 93 ~~Cr~~~~~ 101 (159)
-+|+|.|.+
T Consensus 81 ~tC~V~H~~ 89 (103)
T d1i1ca1 81 FKCKVNSGA 89 (103)
T ss_dssp EEEEEECSS
T ss_pred EEEEEEeCC
Confidence 489999865
No 8
>d2f2ha3 b.71.1.4 (A:586-665) Putative glucosidase YicI, domain 3 {Escherichia coli [TaxId: 562]}
Probab=15.19 E-value=31 Score=21.59 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=15.2
Q ss_pred eeeecCCCCcchhhhhhhh
Q 044660 52 DQWYDWPRGRNVYIIQKQL 70 (159)
Q Consensus 52 dlyYDwp~gRn~niIq~QL 70 (159)
-+||++|.-.+.-.++.|.
T Consensus 5 Pl~~~~p~d~~~~~~~~Qf 23 (80)
T d2f2ha3 5 AMMMEFPDDPACDYLDRQY 23 (80)
T ss_dssp CHHHHSTTCGGGTTCCSCE
T ss_pred CccccCCCChhHhCCCcEE
Confidence 3789999987866778887
No 9
>d1emxa_ g.3.6.2 (A:) Heteropdatoxin 2, hptx2 {Giant crab spider (Heteropoda venatoria) [TaxId: 152925]}
Probab=15.14 E-value=22 Score=19.90 Aligned_cols=14 Identities=50% Similarity=1.279 Sum_probs=11.6
Q ss_pred eeCceeeecccccC
Q 044660 120 FTDGFLCNLWEKLD 133 (159)
Q Consensus 120 ~v~Gf~C~vWeK~d 133 (159)
-..|+.|..|-|.+
T Consensus 16 cceg~vcrlwck~~ 29 (30)
T d1emxa_ 16 CCEGYVCRLWCKLD 29 (30)
T ss_dssp CCTTBCCSSSCCBC
T ss_pred hhhhhhhhhheecc
Confidence 35799999999876
No 10
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}
Probab=14.47 E-value=34 Score=22.39 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=14.6
Q ss_pred hhhhhhhhc---ccee----eeE---e-cCceeE
Q 044660 63 VYIIQKQLS---DLLY----NVE---W-NNGTSF 85 (159)
Q Consensus 63 ~niIq~QLg---~~lY----d~E---w-~NgTsf 85 (159)
.++|+.+|| +..| |++ | .|||+|
T Consensus 80 ~~~l~~~LgI~~~RiyI~f~d~~~~~~G~nG~TF 113 (113)
T d1hfoa_ 80 FDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113 (113)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHcCCCcceEEEEEEECCHHHeeeCCCcC
Confidence 455888886 3444 444 5 677776
Done!