Query 044661
Match_columns 326
No_of_seqs 108 out of 161
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:28:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10110 GPDPase_memb: Membran 98.6 6.5E-07 1.4E-11 77.1 11.1 129 122-250 7-147 (149)
2 PF06161 DUF975: Protein of un 98.5 8.9E-05 1.9E-09 68.4 24.9 167 114-313 58-243 (243)
3 PF06790 UPF0259: Uncharacteri 98.2 0.002 4.4E-08 60.2 24.9 118 101-243 77-195 (248)
4 PRK02868 hypothetical protein; 97.9 0.018 4E-07 53.7 26.6 103 116-243 89-192 (245)
5 COG4781 Membrane domain of mem 95.4 2.8 6E-05 40.5 20.4 196 29-235 6-214 (340)
6 PF10110 GPDPase_memb: Membran 76.1 48 0.001 28.1 14.1 49 20-73 19-70 (149)
7 PF13197 DUF4013: Protein of u 49.8 1.7E+02 0.0036 25.1 12.3 24 149-172 42-65 (169)
8 COG5523 Predicted integral mem 44.5 2.9E+02 0.0062 26.3 12.8 55 196-250 149-208 (271)
9 PF11368 DUF3169: Protein of u 37.4 3.3E+02 0.0072 25.1 12.7 57 80-137 165-222 (248)
10 PF04515 Choline_transpo: Plas 35.7 3.9E+02 0.0084 25.3 25.9 29 290-318 305-333 (334)
11 PF02439 Adeno_E3_CR2: Adenovi 33.3 65 0.0014 21.5 3.1 25 292-316 11-35 (38)
12 PF09125 COX2-transmemb: Cytoc 32.0 1E+02 0.0022 20.4 3.8 32 138-169 4-35 (38)
13 PF04854 DUF624: Protein of un 31.9 2.1E+02 0.0045 21.1 9.1 45 110-155 15-61 (77)
14 PF13197 DUF4013: Protein of u 30.8 3.4E+02 0.0073 23.2 8.3 58 108-165 99-157 (169)
15 PF04281 Tom22: Mitochondrial 28.3 2.6E+02 0.0057 23.9 6.9 37 23-59 77-113 (137)
16 PF03605 DcuA_DcuB: Anaerobic 26.6 3.3E+02 0.0072 27.1 8.2 45 114-160 138-184 (364)
17 PF04478 Mid2: Mid2 like cell 22.9 40 0.00086 29.4 0.9 22 304-325 70-91 (154)
18 KOG4111 Translocase of outer m 22.3 1.3E+02 0.0028 25.7 3.8 18 40-57 85-102 (136)
19 PF10813 DUF2733: Protein of u 22.1 42 0.00092 21.5 0.7 17 308-324 7-23 (32)
20 KOG3142 Prenylated rab accepto 21.4 3.8E+02 0.0083 24.1 6.9 36 134-169 50-85 (187)
21 KOG3882 Tetraspanin family int 21.3 3.8E+02 0.0082 24.1 7.2 23 19-41 65-87 (237)
22 PRK15406 oligopeptide ABC tran 20.0 7.7E+02 0.017 23.5 11.9 15 121-135 117-131 (302)
No 1
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=98.57 E-value=6.5e-07 Score=77.15 Aligned_cols=129 Identities=11% Similarity=0.069 Sum_probs=88.2
Q ss_pred HHHHHHHHhhhcCCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hhc--cCCCc---hH----HHH
Q 044661 122 ITTVNSAHSAVHNRRFTLQSAIASVKLTWKRPLATTICIYVVLVLYSQLFFVSAA---VTG--NNSLS---TV----PTV 189 (326)
Q Consensus 122 aavv~ava~~ysg~~~tl~~~l~~~~~~wkrll~T~l~~~~l~~~~~~~~~vl~~---~~~--~~~~~---~l----~~~ 189 (326)
++.+..+...++|++.+.+++++...+++|+.........++.+.....+.-+.+ +.. .-+.. .+ ...
T Consensus 7 ~~li~~~~~~~~~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP~~~~~~~s~ll~~l~IP~FI~~~i~~~~~~~ 86 (149)
T PF10110_consen 7 AFLILGIYRILRGEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILPFANLGFSSSLLSKLKIPEFITDYIMKNPWLL 86 (149)
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccCcCchHHHHHHHHhHHHH
Confidence 4556778899999999999999877777777766665554444432222221111 111 11110 01 134
Q ss_pred HHHHHHHHHHHHHHHHHhhhheeeeeccccchhHhhhhhccccchhHHHHHHHHHHHHHHH
Q 044661 190 FVWAVGSVLQVHLMAVLGLALVVSVLEDRFGFDAVRVGAGMMEGRMVCGWFLSFWFALMSG 250 (326)
Q Consensus 190 l~~i~~~~~~vYl~vvw~La~VVSVlE~~~G~~Al~rS~~L~kG~~~~~~~l~lv~~l~~~ 250 (326)
.+.++..+...|+++.|.++...-++||+.-.+|+++||+++|||.++-+...+......+
T Consensus 87 ~~~~~~~~~~~~l~~R~if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~~~~~l~~~~~~~ 147 (149)
T PF10110_consen 87 ILYLLLYLILFYLNIRLIFVLPLIVLENKSFKEALKESWQLTKGRFWRILGRLLLLFIIIG 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 4555666678899999999999999999977799999999999999887777666555443
No 2
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=98.53 E-value=8.9e-05 Score=68.43 Aligned_cols=167 Identities=16% Similarity=0.164 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHH--Hhh-------ccCC
Q 044661 114 YLLSLVAAITTVNSAHSAVHN-RRFTLQSAIASV-KLTWKRPLATTICIYVVLVLYSQLFFVSA--AVT-------GNNS 182 (326)
Q Consensus 114 ~~~slls~aavv~ava~~ysg-~~~tl~~~l~~~-~~~wkrll~T~l~~~~l~~~~~~~~~vl~--~~~-------~~~~ 182 (326)
++.+++. ....+..-....| ++++++++...+ ++.+.+.+.+.+...+..+....+.++.. .+. +...
T Consensus 58 lv~~~l~-~G~~~~~L~~~r~~~~~~~~d~f~~F~~~~f~k~~~~~ll~~l~~~Lw~ll~~i~~~i~~~~~~~~~~~~~~ 136 (243)
T PF06161_consen 58 LVSGPLS-AGYSFFYLDIVRGKEEPSFSDLFYGFKKKRFGKSFLLYLLISLFIFLWSLLFIIGFFIFFISFFIFLVGSMN 136 (243)
T ss_pred HHHHHHH-HHHHHHHHHHHhCCCCCCHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3334444 4556667777777 899999999988 33455556777766666666555533111 110 1111
Q ss_pred -CchH---H--HHHHHHHHHHHHHHHHHHHhhhheeeeec-c-ccchhHhhhhhccccchhHHHHHHHHHHHHHHHHHHH
Q 044661 183 -LSTV---P--TVFVWAVGSVLQVHLMAVLGLALVVSVLE-D-RFGFDAVRVGAGMMEGRMVCGWFLSFWFALMSGLIGW 254 (326)
Q Consensus 183 -~~~l---~--~~l~~i~~~~~~vYl~vvw~La~VVSVlE-~-~~G~~Al~rS~~L~kG~~~~~~~l~lv~~l~~~~i~~ 254 (326)
.... . .....++..+.-+|....+.++.-+= .| + .-..+|+++|+++|||++++-+.+-+-|.-+..+ .
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~i~~i~~~~~y~~~~yil-~d~~~~~~~~al~~S~~lmkg~k~~~f~l~Lsfigw~~L-~- 213 (243)
T PF06161_consen 137 SRSSIISLLLLLVLLLLLLIIPGIIVSYSYSMVPYIL-ADNPELGAFEALKRSRKLMKGNKWRLFLLDLSFIGWYIL-G- 213 (243)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-H-
Confidence 1111 1 11222233333445554444443322 23 2 4566999999999999999988876554433221 1
Q ss_pred HHHHHHHHHhcCCcccccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 044661 255 GWEKLMAAMMDGEDFWKGNKWTVVMGSWEKVGLICLHGIEVVWSYVVTTVFYCEYRKRH 313 (326)
Q Consensus 255 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~lv~l~~~v~l~~~v~~tV~Y~~CK~~h 313 (326)
.. + .|+ ..-.+..+..++++.||-++|+++
T Consensus 214 ----~~---t--------------~gi--------~~l~~~pY~~~~~a~fY~~l~~~~ 243 (243)
T PF06161_consen 214 ----LL---T--------------FGI--------GLLWVIPYINTAQAEFYEELRKRK 243 (243)
T ss_pred ----HH---H--------------HHH--------HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 0 011 112445888999999999999875
No 3
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=98.17 E-value=0.002 Score=60.21 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=80.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhhc
Q 044661 101 SLLRLKFLYFPPSYLLSLVAAITTVNSAHSAVHNRRFTLQSAIASVKLTWKRPL-ATTICIYVVLVLYSQLFFVSAAVTG 179 (326)
Q Consensus 101 ~lll~~~~yl~~~~~~slls~aavv~ava~~ysg~~~tl~~~l~~~~~~wkrll-~T~l~~~~l~~~~~~~~~vl~~~~~ 179 (326)
.++...++.....++-..+-.++++.=......||+.+..+.++...+.|+|++ .++++...+.++...
T Consensus 77 ~ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~L---------- 146 (248)
T PF06790_consen 77 VLLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFML---------- 146 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------
Confidence 344455555555555666667777777888889999999999997767787753 333333333332211
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHhhhheeeeeccccchhHhhhhhccccchhHHHHHHHH
Q 044661 180 NNSLSTVPTVFVWAVGSVLQVHLMAVLGLALVVSVLEDRFGFDAVRVGAGMMEGRMVCGWFLSF 243 (326)
Q Consensus 180 ~~~~~~l~~~l~~i~~~~~~vYl~vvw~La~VVSVlE~~~G~~Al~rS~~L~kG~~~~~~~l~l 243 (326)
+.+==+|+++.+++|-++-|.|+..=.+|+|+||++.+|+.|.....++
T Consensus 147 ---------------~ivPGI~l~I~lslap~ilv~ek~~i~~Amr~S~~Lt~~~~~ii~p~vL 195 (248)
T PF06790_consen 147 ---------------FIVPGIILAILLSLAPIILVLEKKGIFDAMRASWKLTFGNFRIIIPAVL 195 (248)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111347778888888888888876679999999999999776544433
No 4
>PRK02868 hypothetical protein; Provisional
Probab=97.93 E-value=0.018 Score=53.67 Aligned_cols=103 Identities=14% Similarity=0.027 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCchHHHHHHHhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHH
Q 044661 116 LSLVAAITTVNSAHSAVHNRRFTLQSAIASVKLTWKRPL-ATTICIYVVLVLYSQLFFVSAAVTGNNSLSTVPTVFVWAV 194 (326)
Q Consensus 116 ~slls~aavv~ava~~ysg~~~tl~~~l~~~~~~wkrll-~T~l~~~~l~~~~~~~~~vl~~~~~~~~~~~l~~~l~~i~ 194 (326)
-..+-.+++..=....-.||+++..+++....+.|++++ .++++..++.++ ..+
T Consensus 89 g~~lL~g~il~~I~~~s~g~~v~~~~~~~~s~~~lp~l~lL~fl~tLlI~lG-------------------------~~L 143 (245)
T PRK02868 89 GNTLLLGGILTLIQLVSAGQRVSALRAIGASAPILPKLLILIFLTTLLIQLG-------------------------FML 143 (245)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------------------HHH
Confidence 333444444444555557788999999998888887763 333333222222 112
Q ss_pred HHHHHHHHHHHHhhhheeeeeccccchhHhhhhhccccchhHHHHHHHH
Q 044661 195 GSVLQVHLMAVLGLALVVSVLEDRFGFDAVRVGAGMMEGRMVCGWFLSF 243 (326)
Q Consensus 195 ~~~~~vYl~vvw~La~VVSVlE~~~G~~Al~rS~~L~kG~~~~~~~l~l 243 (326)
+.+--+|+.+..+++.++=|.|+.-=.+|+|+||++.+||.|....+++
T Consensus 144 ~iiPGI~l~I~lsLa~vi~v~ek~~v~~Air~S~~l~~~~~~~i~p~il 192 (245)
T PRK02868 144 VVVPGILLAIALSLSPVILVTEKMGIFASMRASMRLAWANMRLVAPAVL 192 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233468888888999898999775558999999999999887666433
No 5
>COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=95.40 E-value=2.8 Score=40.53 Aligned_cols=196 Identities=16% Similarity=0.077 Sum_probs=94.0
Q ss_pred HHHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHHHHHHHhccCCChhhhhhhHHHHHHHHHHHHHHHHh
Q 044661 29 LLNSLVLFTRNKRIFSLIFTLTVLPLSFLRFSLSFSCHAIKNHIYSLEALAGYALTRFESQHVREESRANALSLLRLKFL 108 (326)
Q Consensus 29 lkEs~~I~~~n~~~F~~i~lll~lPls~l~L~~~l~~~pL~~~i~~l~~~~~~~~~p~~~~~l~~~~~~~~~~lll~~~~ 108 (326)
++..+++.++++.-+...++++. +....+..|....+-..-...++.+.-. ++++.+-+++....+.+...+
T Consensus 6 l~~~~k~L~q~k~~~~~~~~lf~-------ii~~~v~~p~l~~~f~fiL~VtG~~~is-~nN~~~ils~p~~vl~Ll~~l 77 (340)
T COG4781 6 LKDKFKLLYQIKLDWDKILLLFQ-------IIVEFVIVPFLSWLFSFILDVTGQPFIS-YNNVGEILSHPPLVLLLLALL 77 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccc-HhHHHHHHcCcHHHHHHHHHH
Confidence 56677777777776666665554 2233334455444421111233333333 555656555554433222221
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhhccC---CC
Q 044661 109 YFPPSYLLSLVAAITTVNSAHSAVHNRRFTLQSAIASVKLTWKRPLATTICIYVVLVLYSQLFF--VSAAVTGNN---SL 183 (326)
Q Consensus 109 yl~~~~~~slls~aavv~ava~~ysg~~~tl~~~l~~~~~~wkrll~T~l~~~~l~~~~~~~~~--vl~~~~~~~---~~ 183 (326)
. ....+--+--.-..|-+-+...++-.++++..+..-...|.+..--+..+++-+.-...+. .+.....+. +.
T Consensus 78 ~--ll~~~vY~efg~~~~~~i~~~~~~~~t~rkiF~~~~~~lkk~~~~q~lfFv~Y~lLliP~~~~~Ls~~lt~kiyiP~ 155 (340)
T COG4781 78 F--LLLLLVYLEFGLLFYMAIALLYNEIYTFRKIFHESFVFLKKLTGYQLLFFVFYILLLIPFARLGLSIVLTNKIYIPE 155 (340)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHccccchH
Confidence 1 1111111111233455555566678999999986444333332222222222221111111 111100111 00
Q ss_pred c---hHH----HH-HHHHHHHHHHHHHHHHHhhhheeeeeccccchhHhhhhhccccchh
Q 044661 184 S---TVP----TV-FVWAVGSVLQVHLMAVLGLALVVSVLEDRFGFDAVRVGAGMMEGRM 235 (326)
Q Consensus 184 ~---~l~----~~-l~~i~~~~~~vYl~vvw~La~VVSVlE~~~G~~Al~rS~~L~kG~~ 235 (326)
. .+. .. +......+.+ |+++.--++..--+.+..-=.+|+|+||+-.|-|.
T Consensus 156 Fi~~eL~Ktt~~~~l~~~~l~liF-yis~RLif~LPl~i~~~~tv~~Air~Swk~TKk~~ 214 (340)
T COG4781 156 FITEELMKTTWGWWLLILFLALIF-YISVRLIFALPLIILDQLTVREAIRESWKKTKKNV 214 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHhhhH
Confidence 0 011 22 3333333334 99999999998887776666689999999999433
No 6
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=76.06 E-value=48 Score=28.14 Aligned_cols=49 Identities=14% Similarity=0.315 Sum_probs=31.8
Q ss_pred hhhhhHHHHHHHHHHHHhh---ChhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHH
Q 044661 20 SLENNCLKILLNSLVLFTR---NKRIFSLIFTLTVLPLSFLRFSLSFSCHAIKNHIY 73 (326)
Q Consensus 20 ~~~~~~~~IlkEs~~I~~~---n~~~F~~i~lll~lPls~l~L~~~l~~~pL~~~i~ 73 (326)
.++.+..++++++.+-.++ -..++..+.+++++|+.-+.+ ..|+.++++
T Consensus 19 ~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP~~~~~~-----~s~ll~~l~ 70 (149)
T PF10110_consen 19 GEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILPFANLGF-----SSSLLSKLK 70 (149)
T ss_pred CCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH-----HHHHHccCc
Confidence 4456688888888876664 344556677788888865443 455656554
No 7
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=49.80 E-value=1.7e+02 Score=25.13 Aligned_cols=24 Identities=13% Similarity=0.397 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 044661 149 TWKRPLATTICIYVVLVLYSQLFF 172 (326)
Q Consensus 149 ~wkrll~T~l~~~~l~~~~~~~~~ 172 (326)
.|++++..-+..+++.+.|...+.
T Consensus 42 ~~~~l~~~G~~~~ii~ivy~i~~~ 65 (169)
T PF13197_consen 42 DWGELFVDGLKAFIISIVYSIPPI 65 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666777777777777776655
No 8
>COG5523 Predicted integral membrane protein [Function unknown]
Probab=44.47 E-value=2.9e+02 Score=26.30 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhh--eeeeeccc--cch-hHhhhhhccccchhHHHHHHHHHHHHHHH
Q 044661 196 SVLQVHLMAVLGLAL--VVSVLEDR--FGF-DAVRVGAGMMEGRMVCGWFLSFWFALMSG 250 (326)
Q Consensus 196 ~~~~vYl~vvw~La~--VVSVlE~~--~G~-~Al~rS~~L~kG~~~~~~~l~lv~~l~~~ 250 (326)
+....+.--.|+++. .-.++||. -|. +++..|...|||.+|.-+.+-+.|.-+..
T Consensus 149 ~~i~ii~~~i~~~~~y~ay~~l~dg~~~ga~~vl~eS~~mMKG~kw~lF~L~Lsf~gW~l 208 (271)
T COG5523 149 LLILIILGYIASLAYYMAYDQLEDGGYLGAYSVLSESKKMMKGYKWKLFILKLSFIGWYL 208 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHhHHHHHHhccccchhhhhHHHHHHHH
Confidence 333444444555543 34567763 333 68899999999999998887776665543
No 9
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=37.44 E-value=3.3e+02 Score=25.06 Aligned_cols=57 Identities=11% Similarity=-0.133 Sum_probs=29.2
Q ss_pred ccCCChhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHhhhcCCCC
Q 044661 80 GYALTRFESQHVREESRANALSLLRLKFLYFPPSYLL-SLVAAITTVNSAHSAVHNRRF 137 (326)
Q Consensus 80 ~~~~~p~~~~~l~~~~~~~~~~lll~~~~yl~~~~~~-slls~aavv~ava~~ysg~~~ 137 (326)
+..+++++.++. -+..||.-+-...+..|-.+...= .++-.+.++-...+.-+|+.-
T Consensus 165 ~~~~~~k~~kk~-i~s~DEgEk~i~y~~~yk~~~~ln~~ll~~~~~~l~i~s~~t~~~q 222 (248)
T PF11368_consen 165 PSFFDPKFVKKW-IESCDEGEKQINYEASYKIYFKLNQYLLPILYILLFIYSLLTGENQ 222 (248)
T ss_pred CCCCChHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 344677644443 335667767677777776665521 232333333334444455443
No 10
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=35.75 E-value=3.9e+02 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.347 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccc
Q 044661 290 LHGIEVVWSYVVTTVFYCEYRKRHVSTNE 318 (326)
Q Consensus 290 l~~~v~l~~~v~~tV~Y~~CK~~h~e~~~ 318 (326)
...+..+++.++.|++.+.|.+.+.++.|
T Consensus 305 ~~~f~~v~~~~vdti~vc~~~d~e~~~~~ 333 (334)
T PF04515_consen 305 SSIFMSVYSSAVDTIFVCYAEDPEMNKND 333 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 45678889999999999999876655443
No 11
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=33.33 E-value=65 Score=21.51 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhccccccc
Q 044661 292 GIEVVWSYVVTTVFYCEYRKRHVST 316 (326)
Q Consensus 292 ~~v~l~~~v~~tV~Y~~CK~~h~e~ 316 (326)
+++.-+...+.+++||-|.-+++++
T Consensus 11 ~V~vg~~iiii~~~~YaCcykk~~~ 35 (38)
T PF02439_consen 11 AVVVGMAIIIICMFYYACCYKKHRR 35 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc
Confidence 3455566778889999998777764
No 12
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=32.04 E-value=1e+02 Score=20.42 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=24.9
Q ss_pred chHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 044661 138 TLQSAIASVKLTWKRPLATTICIYVVLVLYSQ 169 (326)
Q Consensus 138 tl~~~l~~~~~~wkrll~T~l~~~~l~~~~~~ 169 (326)
..++.+.+..|.|--.-.+.+.+++++.+|..
T Consensus 4 k~hkai~aYEr~Wi~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 4 KAHKAIEAYERGWIAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888898777788888888887765
No 13
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=31.93 E-value=2.1e+02 Score=21.09 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC--CCchHHHHHHHhhhhhhHHH
Q 044661 110 FPPSYLLSLVAAITTVNSAHSAVHNR--RFTLQSAIASVKLTWKRPLA 155 (326)
Q Consensus 110 l~~~~~~slls~aavv~ava~~ysg~--~~tl~~~l~~~~~~wkrll~ 155 (326)
.++.+.+.+ +++|..+++.....|+ ...+++..+..+++||+-..
T Consensus 15 ~l~v~tigP-A~~Al~~~~~~~~~~~~~~~~~~~f~~~fk~nf~~~~~ 61 (77)
T PF04854_consen 15 GLPVFTIGP-ATAALYYVVRKWVRDEEDSYLFRDFWRAFKQNFKQSLL 61 (77)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHHHHH
Confidence 334444444 4455566666666665 57888888899999988643
No 14
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=30.80 E-value=3.4e+02 Score=23.19 Aligned_cols=58 Identities=16% Similarity=0.299 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHh-hhhhhHHHHHHHHHHHHH
Q 044661 108 LYFPPSYLLSLVAAITTVNSAHSAVHNRRFTLQSAIASVK-LTWKRPLATTICIYVVLV 165 (326)
Q Consensus 108 ~yl~~~~~~slls~aavv~ava~~ysg~~~tl~~~l~~~~-~~wkrll~T~l~~~~l~~ 165 (326)
...+...+++++..++...-+..---++-.++++..+..+ +.|.+.+.+++...++..
T Consensus 99 l~~i~~i~~~~~~~~a~~~~a~~~~~~~af~~~~i~~~i~~~~~~~~l~~~i~~~ii~~ 157 (169)
T PF13197_consen 99 LAIILSIIFGLLFPIALARYARTGSFSAAFNFKEIFKMISSIGWLGYLIAYIVVIIISI 157 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555556665565555444433335688888888877 578777666665544433
No 15
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=28.28 E-value=2.6e+02 Score=23.89 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHhhChhhHHHHHHHHHHHHHHHHH
Q 044661 23 NNCLKILLNSLVLFTRNKRIFSLIFTLTVLPLSFLRF 59 (326)
Q Consensus 23 ~~~~~IlkEs~~I~~~n~~~F~~i~lll~lPls~l~L 59 (326)
+......|-.++.-.+--.+++.=++++.+|+.+-+.
T Consensus 77 ~~~~~~~k~~~~~~g~a~Wi~tTSallLgvPl~l~ie 113 (137)
T PF04281_consen 77 STTSSAVKSLFSFSGKALWIVTTSALLLGVPLALEIE 113 (137)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555566666667777778777443
No 16
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=26.58 E-value=3.3e+02 Score=27.13 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcC-CCCchHHHHHH-HhhhhhhHHHHHHHH
Q 044661 114 YLLSLVAAITTVNSAHSAVHN-RRFTLQSAIAS-VKLTWKRPLATTICI 160 (326)
Q Consensus 114 ~~~slls~aavv~ava~~ysg-~~~tl~~~l~~-~~~~wkrll~T~l~~ 160 (326)
.+-|+.|.+.+.. ...-.+ ..+++.+++.. +|..+-+.+++.++.
T Consensus 138 ItaSPiSAA~~~~--~~~l~~~~gv~~~~iL~V~iPat~ig~~~~a~~~ 184 (364)
T PF03605_consen 138 ITASPISAATVAM--IAILAPAHGVSLLQILAVTIPATLIGVLVAAFVS 184 (364)
T ss_pred hhcCcHHHHHHHH--HHHHccccCCCHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4457776554443 334455 78999999884 777777666665554
No 17
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=22.87 E-value=40 Score=29.43 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=15.7
Q ss_pred HHHHhhcccccccccCCCCccc
Q 044661 304 VFYCEYRKRHVSTNENDSNVFT 325 (326)
Q Consensus 304 V~Y~~CK~~h~e~~~~~~~~~~ 325 (326)
+|||-+|+++-+-+|.||||.|
T Consensus 70 vf~~c~r~kktdfidSdGkvvt 91 (154)
T PF04478_consen 70 VFIFCIRRKKTDFIDSDGKVVT 91 (154)
T ss_pred heeEEEecccCccccCCCcEEE
Confidence 3455555556679999999976
No 18
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.28 E-value=1.3e+02 Score=25.70 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 044661 40 KRIFSLIFTLTVLPLSFL 57 (326)
Q Consensus 40 ~~~F~~i~lll~lPls~l 57 (326)
-.+++.-++++.+|+.+-
T Consensus 85 ~Wi~tTt~lIL~vP~i~e 102 (136)
T KOG4111|consen 85 AWIATTTFLILVVPLIFE 102 (136)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 345566667777777663
No 19
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=22.10 E-value=42 Score=21.53 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.2
Q ss_pred hhcccccccccCCCCcc
Q 044661 308 EYRKRHVSTNENDSNVF 324 (326)
Q Consensus 308 ~CK~~h~e~~~~~~~~~ 324 (326)
.||++|+-..|.+||..
T Consensus 7 ~Ckrr~n~l~Dv~G~~I 23 (32)
T PF10813_consen 7 MCKRRHNPLKDVKGNPI 23 (32)
T ss_pred eeeccCCcccccCCCEE
Confidence 59999988889888864
No 20
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.40 E-value=3.8e+02 Score=24.15 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=26.7
Q ss_pred CCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 044661 134 NRRFTLQSAIASVKLTWKRPLATTICIYVVLVLYSQ 169 (326)
Q Consensus 134 g~~~tl~~~l~~~~~~wkrll~T~l~~~~l~~~~~~ 169 (326)
.+|-++.++.++++++...-=.-+.....+...|+.
T Consensus 50 s~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sL 85 (187)
T KOG3142|consen 50 SRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSL 85 (187)
T ss_pred CCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 379999999999999988776666665555555443
No 21
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=21.32 E-value=3.8e+02 Score=24.13 Aligned_cols=23 Identities=17% Similarity=-0.081 Sum_probs=16.9
Q ss_pred hhhhhhHHHHHHHHHHHHhhChh
Q 044661 19 SSLENNCLKILLNSLVLFTRNKR 41 (326)
Q Consensus 19 ~~~~~~~~~IlkEs~~I~~~n~~ 41 (326)
-.--.+|+|.+||+...+....-
T Consensus 65 ~v~flGc~Ga~~es~~lL~~y~~ 87 (237)
T KOG3882|consen 65 LVGFLGCCGALRESRCLLLSYFI 87 (237)
T ss_pred HHHHhhhhhhHhhhHHHHHHHHH
Confidence 34457899999999997765443
No 22
>PRK15406 oligopeptide ABC transporter permease OppC; Provisional
Probab=20.05 E-value=7.7e+02 Score=23.51 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhhcCC
Q 044661 121 AITTVNSAHSAVHNR 135 (326)
Q Consensus 121 ~aavv~ava~~ysg~ 135 (326)
.+++..+..+.|.|+
T Consensus 117 ~iGi~lG~~ag~~gg 131 (302)
T PRK15406 117 VVGTLYGSLSGYLGG 131 (302)
T ss_pred HHHHHHHHHHHHhCc
Confidence 345556666677653
Done!