Query 044661
Match_columns 326
No_of_seqs 108 out of 161
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bkf_A Zinc-finger protein NBR 16.6 80 0.0027 23.8 2.4 13 29-41 66-78 (87)
2 1wj6_A KIAA0049 protein, RSGI 14.0 80 0.0027 24.5 1.8 13 29-41 74-86 (101)
3 2ww9_B Protein transport prote 9.3 1.5E+02 0.005 22.0 1.9 35 22-56 22-60 (80)
4 3ul0_C Nuclear CAP-binding pro 7.7 1.4E+02 0.0047 17.0 0.8 10 3-12 6-15 (26)
5 3arc_M Photosystem II reaction 6.8 5.1E+02 0.017 16.2 3.3 20 40-59 5-24 (36)
6 2li5_B Ubiquitin-like modifier 6.4 1.9E+02 0.0063 17.4 1.0 7 5-11 26-32 (34)
7 4b6m_A Tubulin-specific chaper 5.0 1E+02 0.0035 23.0 -1.0 12 304-315 56-67 (84)
8 1vyi_A RNA polymerase alpha su 4.8 1.9E+02 0.0063 22.3 0.4 20 18-37 42-61 (112)
9 3cx8_B RHO guanine nucleotide 4.8 1.1E+03 0.038 20.3 5.4 13 30-42 23-35 (203)
10 2obp_A Putative DNA-binding pr 4.7 2.9E+02 0.0099 20.8 1.5 26 6-32 3-28 (96)
No 1
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=16.62 E-value=80 Score=23.85 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=10.2
Q ss_pred HHHHHHHHhhChh
Q 044661 29 LLNSLVLFTRNKR 41 (326)
Q Consensus 29 lkEs~~I~~~n~~ 41 (326)
++||+|+-.+.++
T Consensus 66 ~eEAlkva~k~~n 78 (87)
T 2bkf_A 66 YEEALKMAVKQGN 78 (87)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHhccCCC
Confidence 8899998887554
No 2
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=13.98 E-value=80 Score=24.50 Aligned_cols=13 Identities=8% Similarity=0.120 Sum_probs=9.8
Q ss_pred HHHHHHHHhhChh
Q 044661 29 LLNSLVLFTRNKR 41 (326)
Q Consensus 29 lkEs~~I~~~n~~ 41 (326)
++||+|+-.+.++
T Consensus 74 ~eEAlkva~k~~n 86 (101)
T 1wj6_A 74 YEEALKMAVKQGN 86 (101)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHhccCCC
Confidence 8899998877443
No 3
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=9.35 E-value=1.5e+02 Score=22.02 Aligned_cols=35 Identities=3% Similarity=0.044 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHhhC----hhhHHHHHHHHHHHHHH
Q 044661 22 ENNCLKILLNSLVLFTRN----KRIFSLIFTLTVLPLSF 56 (326)
Q Consensus 22 ~~~~~~IlkEs~~I~~~n----~~~F~~i~lll~lPls~ 56 (326)
....-++++|+.|++.+. ++=|..++-...+-+.+
T Consensus 22 ~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~i 60 (80)
T 2ww9_B 22 VEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIA 60 (80)
T ss_dssp CHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 366778999999999974 44577777666655544
No 4
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=7.66 E-value=1.4e+02 Score=16.97 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=5.9
Q ss_pred CCCCCccccc
Q 044661 3 ERHDDDDDEN 12 (326)
Q Consensus 3 ~~~~~~~~~~ 12 (326)
.||.||.|..
T Consensus 6 rrhsdendgg 15 (26)
T 3ul0_C 6 RRHSDENDGG 15 (26)
T ss_dssp CCCTTSCSSC
T ss_pred cccccccCCC
Confidence 4677766543
No 5
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=6.84 E-value=5.1e+02 Score=16.16 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 044661 40 KRIFSLIFTLTVLPLSFLRF 59 (326)
Q Consensus 40 ~~~F~~i~lll~lPls~l~L 59 (326)
.--|.+..++...|..|++.
T Consensus 5 ~l~fiAt~Lfi~iPt~FLli 24 (36)
T 3arc_M 5 QLGLIATALFVLVPSVFLII 24 (36)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34578888899999988655
No 6
>2li5_B Ubiquitin-like modifier-activating enzyme ATG7; autophagy, protein transport; NMR {Saccharomyces cerevisiae}
Probab=6.36 E-value=1.9e+02 Score=17.36 Aligned_cols=7 Identities=57% Similarity=1.014 Sum_probs=3.2
Q ss_pred CCCcccc
Q 044661 5 HDDDDDE 11 (326)
Q Consensus 5 ~~~~~~~ 11 (326)
.|||.||
T Consensus 26 eddesde 32 (34)
T 2li5_B 26 EDDESDE 32 (34)
T ss_dssp SCTTSGG
T ss_pred ccccccc
Confidence 4444444
No 7
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=4.98 E-value=1e+02 Score=23.03 Aligned_cols=12 Identities=0% Similarity=-0.213 Sum_probs=8.0
Q ss_pred HHHHhhcccccc
Q 044661 304 VFYCEYRKRHVS 315 (326)
Q Consensus 304 V~Y~~CK~~h~e 315 (326)
+=||+|+..|+-
T Consensus 56 ~rYF~C~~~~G~ 67 (84)
T 4b6m_A 56 TRVFQCQPNYGG 67 (84)
T ss_dssp EESSCCCTTSEE
T ss_pred EEEEecCCCeEE
Confidence 457888876654
No 8
>1vyi_A RNA polymerase alpha subunit; transferase, replication, transcription, RNA-directed RNA polymerase, phosphorylation; HET: GOL; 1.5A {Rabies virus} SCOP: d.293.1.1
Probab=4.84 E-value=1.9e+02 Score=22.32 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=17.3
Q ss_pred hhhhhhhHHHHHHHHHHHHh
Q 044661 18 FSSLENNCLKILLNSLVLFT 37 (326)
Q Consensus 18 ~~~~~~~~~~IlkEs~~I~~ 37 (326)
|+..+||.=+|.||+..||-
T Consensus 42 feqlkmnlDdIv~~a~~iPg 61 (112)
T 1vyi_A 42 FEQLKMNLDDIVKEAKNVPG 61 (112)
T ss_dssp GGGGCCCHHHHHHHHTTSTT
T ss_pred HHHHhccHHHHHHHHhcCCc
Confidence 67788999999999988874
No 9
>3cx8_B RHO guanine nucleotide exchange factor 11; signal transduction, protein complex, GTP-binding, lipoprotein, membrane, nucleotide-binding; HET: GSP; 2.00A {Rattus norvegicus} PDB: 3cx6_B* 3cx7_B* 1htj_F
Probab=4.82 E-value=1.1e+03 Score=20.27 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=8.0
Q ss_pred HHHHHHHhhChhh
Q 044661 30 LNSLVLFTRNKRI 42 (326)
Q Consensus 30 kEs~~I~~~n~~~ 42 (326)
-.++..+.++|-|
T Consensus 23 F~sle~Lk~rPAH 35 (203)
T 3cx8_B 23 FQDLEKLKSHPAY 35 (203)
T ss_dssp HHCHHHHHTCHHH
T ss_pred ccCHHHHhcCcHH
Confidence 3455566677776
No 10
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=4.71 E-value=2.9e+02 Score=20.82 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCcccccchhhhhhhhhhhHHHHHHHH
Q 044661 6 DDDDDENNIDNAFSSLENNCLKILLNS 32 (326)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~IlkEs 32 (326)
||||+|||-.. ....+-..+.-|+|.
T Consensus 3 ~~~~~~~~~~g-l~~~q~~vL~~L~~~ 28 (96)
T 2obp_A 3 SDPGNEQNGDG-IDPAIVEVLLVLREA 28 (96)
T ss_dssp ----------C-CCHHHHHHHHHHHHH
T ss_pred CcccccccccC-CCHHHHHHHHHHHHH
Done!