Query 044661
Match_columns 326
No_of_seqs 108 out of 161
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 09:13:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044661.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044661hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmeb2 f.17.2.1 (B:3-36) Bact 13.6 1.1E+02 0.008 16.9 4.0 29 139-167 5-33 (34)
2 d2cp0a1 b.34.10.1 (A:7-89) CLI 8.7 22 0.0016 24.8 -1.1 11 305-315 60-70 (83)
3 d2e3ha1 b.34.10.1 (A:212-282) 8.6 23 0.0016 23.9 -1.0 13 304-316 49-61 (71)
4 d2hqha1 b.34.10.1 (A:26-97) Dy 8.5 24 0.0017 24.0 -1.0 12 304-315 51-62 (72)
5 d1vyia_ d.293.1.1 (A:) Phospho 7.5 50 0.0036 23.6 0.4 20 18-37 42-61 (111)
6 d1whla_ b.34.10.1 (A:) Cylindr 7.3 28 0.002 24.9 -1.1 12 304-315 67-78 (95)
7 d1wmha_ d.15.2.2 (A:) Protein 7.3 99 0.0072 21.3 1.9 13 29-41 62-74 (83)
8 d1whka_ b.34.10.1 (A:) Restin- 7.2 30 0.0022 24.5 -0.9 14 304-317 62-75 (91)
9 d1whja_ b.34.10.1 (A:) Restin- 6.8 31 0.0022 24.9 -1.1 12 304-315 73-84 (102)
10 d2d8va1 g.43.1.1 (A:8-61) Zinc 6.6 31 0.0023 22.1 -1.0 16 3-18 30-45 (54)
No 1
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=13.60 E-value=1.1e+02 Score=16.91 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=17.7
Q ss_pred hHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 044661 139 LQSAIASVKLTWKRPLATTICIYVVLVLY 167 (326)
Q Consensus 139 l~~~l~~~~~~wkrll~T~l~~~~l~~~~ 167 (326)
-.+.+-+..|.|...-...+++++.+++|
T Consensus 5 ahkailayekgwlafslamlfvfialiay 33 (34)
T d1xmeb2 5 AHKAILAYEKGWLAFSLAMLFVFIALIAY 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 34556666777766655666666655555
No 2
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.68 E-value=22 Score=24.78 Aligned_cols=11 Identities=9% Similarity=-0.070 Sum_probs=7.7
Q ss_pred HHHhhcccccc
Q 044661 305 FYCEYRKRHVS 315 (326)
Q Consensus 305 ~Y~~CK~~h~e 315 (326)
=||+|+..|+-
T Consensus 60 rYF~C~~~~G~ 70 (83)
T d2cp0a1 60 RYFICPPKQGL 70 (83)
T ss_dssp ECCCCSSSCEE
T ss_pred EEeecCCCceE
Confidence 37888877764
No 3
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.65 E-value=23 Score=23.95 Aligned_cols=13 Identities=8% Similarity=-0.028 Sum_probs=8.9
Q ss_pred HHHHhhccccccc
Q 044661 304 VFYCEYRKRHVST 316 (326)
Q Consensus 304 V~Y~~CK~~h~e~ 316 (326)
+-||+|+..|+--
T Consensus 49 ~~YF~c~~~~G~F 61 (71)
T d2e3ha1 49 TRYFQCQPKYGLF 61 (71)
T ss_dssp EESCCCCTTCEEE
T ss_pred EEEEecCCCCEEE
Confidence 3488888777653
No 4
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.55 E-value=24 Score=23.97 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=8.0
Q ss_pred HHHHhhcccccc
Q 044661 304 VFYCEYRKRHVS 315 (326)
Q Consensus 304 V~Y~~CK~~h~e 315 (326)
+=||+|+..|+-
T Consensus 51 ~~YF~C~~~~G~ 62 (72)
T d2hqha1 51 RKYFTCDEGHGI 62 (72)
T ss_dssp EESSCCCTTTEE
T ss_pred EEEEecCCCcEE
Confidence 347888877654
No 5
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]}
Probab=7.46 E-value=50 Score=23.63 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=17.5
Q ss_pred hhhhhhhHHHHHHHHHHHHh
Q 044661 18 FSSLENNCLKILLNSLVLFT 37 (326)
Q Consensus 18 ~~~~~~~~~~IlkEs~~I~~ 37 (326)
|+..+||.=+|.||+..+|-
T Consensus 42 FEQLKmNLDdIVk~ak~vPg 61 (111)
T d1vyia_ 42 FEQLKMNLDDIVKEAKNVPG 61 (111)
T ss_dssp GGGGCCCHHHHHHHHTTSTT
T ss_pred HHHHhccHHHHHHHhccCCc
Confidence 77889999999999988774
No 6
>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.33 E-value=28 Score=24.87 Aligned_cols=12 Identities=0% Similarity=-0.244 Sum_probs=8.2
Q ss_pred HHHHhhcccccc
Q 044661 304 VFYCEYRKRHVS 315 (326)
Q Consensus 304 V~Y~~CK~~h~e 315 (326)
+-||+||..|+-
T Consensus 67 ~rYF~C~~~~Gi 78 (95)
T d1whla_ 67 KQLFQCDEDCGV 78 (95)
T ss_dssp EECCCCCTTTEE
T ss_pred EEEEecCCCcEE
Confidence 458888876653
No 7
>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.26 E-value=99 Score=21.30 Aligned_cols=13 Identities=31% Similarity=0.429 Sum_probs=11.3
Q ss_pred HHHHHHHHhhChh
Q 044661 29 LLNSLVLFTRNKR 41 (326)
Q Consensus 29 lkEs~~I~~~n~~ 41 (326)
|.||+|+...|+.
T Consensus 62 L~EA~RLye~n~d 74 (83)
T d1wmha_ 62 LEEAFRLYELNKD 74 (83)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCC
Confidence 8999999998863
No 8
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.22 E-value=30 Score=24.50 Aligned_cols=14 Identities=7% Similarity=-0.142 Sum_probs=10.0
Q ss_pred HHHHhhcccccccc
Q 044661 304 VFYCEYRKRHVSTN 317 (326)
Q Consensus 304 V~Y~~CK~~h~e~~ 317 (326)
+-||+||..|+.-+
T Consensus 62 ~~YF~C~~~~G~Fv 75 (91)
T d1whka_ 62 KRYFTCKPNYGVLV 75 (91)
T ss_dssp EECCCCSTTCCCEE
T ss_pred EEEeecCCCceEEe
Confidence 45889998876543
No 9
>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.82 E-value=31 Score=24.94 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=7.9
Q ss_pred HHHHhhcccccc
Q 044661 304 VFYCEYRKRHVS 315 (326)
Q Consensus 304 V~Y~~CK~~h~e 315 (326)
+=||+||..|+-
T Consensus 73 ~~YF~C~~~~Gi 84 (102)
T d1whja_ 73 VQYFKCAPKYGI 84 (102)
T ss_dssp EECCCCCTTTEE
T ss_pred EEEeecCCCcEE
Confidence 447788777654
No 10
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.63 E-value=31 Score=22.09 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=11.6
Q ss_pred CCCCCcccccchhhhh
Q 044661 3 ERHDDDDDENNIDNAF 18 (326)
Q Consensus 3 ~~~~~~~~~~~~~~~~ 18 (326)
|-|||+|++.-+.-.+
T Consensus 30 E~Hdd~e~~~H~~~~y 45 (54)
T d2d8va1 30 EGHDNFDLKEHQTSPY 45 (54)
T ss_dssp HHTTTSSTTTCCEECC
T ss_pred Hhccccccccceeccc
Confidence 5699999887766443
Done!