BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044668
(353 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 82/184 (44%), Gaps = 39/184 (21%)
Query: 62 YVDCGSIYESPISFVKTDLLERMAFRSTRDR-------------SNIQASPSREQMGCSF 108
++D GS YES + LE +AF+ T++R +++ A SRE
Sbjct: 40 WIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQNALEKEVESMGAHLNAYSSREHTAYYI 99
Query: 109 AALETYVPEMVELLTDI-------------------SEATRNPQSLLSEAIFSACYSVV- 148
AL VP+ VELL DI E N S+ E +F+ ++
Sbjct: 100 KALSKDVPKAVELLADIVQNCSLEDSQIEKERDVIVRELQENDTSM-REVVFNYLHATAF 158
Query: 149 ----LANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAAS-GVEHDQLVSVEEPLLSD 203
LA + P I +L+ + E+ + +YTAP MVLAA+ GVEH QL+ + +
Sbjct: 159 QGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTAPRMVLAAAGGVEHQQLLELAQKHFGG 218
Query: 204 LPIS 207
+P +
Sbjct: 219 VPFT 222
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/372 (22%), Positives = 135/372 (36%), Gaps = 107/372 (28%)
Query: 55 SSLPDYF-----YVDCGSIYESPISFVKTDLLERMAFRSTRD-------------RSNIQ 96
S+ P +F Y+D GS +E T +L+R+AF+ST N Q
Sbjct: 20 SNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQ 79
Query: 97 ASPSREQMGCSFAALETYVPEMVELLTD----------------------ISEATRNPQS 134
+ SRE + + V +M++L+++ I E P+
Sbjct: 80 CTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPEL 139
Query: 135 LLSEAIFSACYSV-VLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQL 193
+L E + +A YS L +PL+ P I ++ + ++ + YT V A GV H++
Sbjct: 140 VLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKA 199
Query: 194 VSVEEPLLSDL----------------------PISILTKSPDLCTLE---------DKD 222
+ + L D P + P+L ++ D
Sbjct: 200 LELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPD 259
Query: 223 AMTLTVTQMLLEXXXXXXXXXXXXXVYSRLHRRVLNEIPRVQQGVYF---------CGIT 273
L Q LL +YSRL+ VLN+ V+ V F GI+
Sbjct: 260 IYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGIS 319
Query: 274 --------PGEVNQV------------------QLDRAVQSTNSAILMNLESRIVVSEDI 307
P V + ++ RA S++LMNLES++V ED+
Sbjct: 320 LSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDM 379
Query: 308 DRQVQTHGEMKP 319
RQV HG P
Sbjct: 380 GRQVLMHGRKIP 391
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 37/180 (20%)
Query: 62 YVDCGSIYESPISFVKTDLLERMAFRSTRDR-------------SNIQASPSREQMGCSF 108
++D GS YES + +E +AF+ T++R +++ A +RE
Sbjct: 74 WIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYI 133
Query: 109 AALETYVPEMVELLTDI--------SEATRNPQSLLSE----------AIFSACYSVV-- 148
AL +P+ VELL DI S+ + +L E +F+ ++
Sbjct: 134 KALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQ 193
Query: 149 ---LANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAAS-GVEHDQLVSVEEPLLSDL 204
LA + P + +L+ + E+ + +Y AP MVLAA+ G+EH QL+ + + S L
Sbjct: 194 GTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGL 253
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 37/180 (20%)
Query: 62 YVDCGSIYESPISFVKTDLLERMAFRSTRDR-------------SNIQASPSREQMGCSF 108
++D GS YES + +E +AF+ T++R +++ A +RE
Sbjct: 40 WIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYI 99
Query: 109 AALETYVPEMVELLTDI--------SEATRNPQSLLSE----------AIFSACYSVV-- 148
AL +P+ VELL DI S+ + +L E +F+ ++
Sbjct: 100 KALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQ 159
Query: 149 ---LANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAAS-GVEHDQLVSVEEPLLSDL 204
LA + P + +L+ + E+ + +Y AP MVLAA+ G+EH QL+ + + S L
Sbjct: 160 GTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGL 219
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 37/180 (20%)
Query: 62 YVDCGSIYESPISFVKTDLLERMAFRSTRDR-------------SNIQASPSREQMGCSF 108
++D GS YES + +E +AF+ T++R +++ A +RE
Sbjct: 40 WIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYI 99
Query: 109 AALETYVPEMVELLTDI--------SEATRNPQSLLSE----------AIFSACYSVV-- 148
AL +P+ VELL DI S+ + +L E +F+ ++
Sbjct: 100 KALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQ 159
Query: 149 ---LANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAAS-GVEHDQLVSVEEPLLSDL 204
LA + P + +L+ + E+ + +Y AP MVLAA+ G+EH QL+ + + S L
Sbjct: 160 GTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGL 219
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 37/177 (20%)
Query: 62 YVDCGSIYESPISFVKTDLLERMA----------FRSTRDRSNIQASPS----REQMGCS 107
++ GS YE+ + LL R+A FR TR + S S RE+M
Sbjct: 52 FIKAGSRYETTANLGTAHLL-RLASPLTTKGASSFRITRGIEAVGGSLSVYSTREKMTYC 110
Query: 108 FAALETYVPEMVELLTDISEA----------------------TRNPQSLLSEAIFSACY 145
L +V ++E L +++ A ++PQ + E + +A Y
Sbjct: 111 VECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQLKVDKAVAFQSPQVGVLENLHAAAY 170
Query: 146 SVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLS 202
LANPL P+ I ++ S + F N+T+ M L GV+H L V E L+
Sbjct: 171 KTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARMALVGIGVKHSDLKQVAEQFLN 227
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 78/184 (42%), Gaps = 37/184 (20%)
Query: 61 FYVDCGSIYESPISFVKTDLLERMAFRSTRDR-------------SNIQASPSREQMGCS 107
+VD GS E+ + LE +AF+ T++R S++ A SRE
Sbjct: 33 IFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYY 92
Query: 108 FAALETYVPEMVELLTDI----------SEATRNP--------QSLLSEAIFSACYSVV- 148
+L+ +P+ V++L+DI E R+ + E +F + +
Sbjct: 93 AKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITY 152
Query: 149 ----LANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSD 203
L +L P I + T +K++ +NY MVLA +G V+H++LV +
Sbjct: 153 KDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGH 212
Query: 204 LPIS 207
+P S
Sbjct: 213 VPKS 216
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 254 RRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQT 313
R ++NEI + + I G+++ +++RA +A+L++L+ + EDI RQV T
Sbjct: 331 RLIVNEILK-----EWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVT 385
Query: 314 HGE-MKPKLILSPLTMASYGDVINVPSY 340
G+ + P+ + + + D+I +Y
Sbjct: 386 TGKRLSPEEVFEQVDKITKDDIIMWANY 413
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 37/184 (20%)
Query: 61 FYVDCGSIYESPISFVKTDLLERMAFRSTRDR-------------SNIQASPSREQMGCS 107
+VD GS E+ + L+ +AF+ T++R S++ A SRE
Sbjct: 33 IFVDAGSRAENVKNNGTAHFLQHLAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYY 92
Query: 108 FAALETYVPEMVELLTDI----------SEATRNP--------QSLLSEAIFSACYSVV- 148
+L+ +P+ V++L+DI E R+ + E +F + +
Sbjct: 93 AKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITY 152
Query: 149 ----LANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSD 203
L +L P I + T +K++ +NY MVLA +G V+H++LV +
Sbjct: 153 KDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGH 212
Query: 204 LPIS 207
+P S
Sbjct: 213 VPKS 216
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 254 RRVLNEIPRVQQGVYFCGITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQT 313
R ++NEI + + I G+++ +++RA +A+L++L+ + EDI RQV T
Sbjct: 331 RLIVNEILK-----EWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVT 385
Query: 314 HGE-MKPKLILSPLTMASYGDVINVPSY 340
G+ + P+ + + + D+I +Y
Sbjct: 386 TGKRLSPEEVFEQVDKITKDDIIMWANY 413
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 120 ELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAP 179
+L D + A +NPQ+ + E + +A Y LA+ L P+ I ++ S + +F ++T+
Sbjct: 126 QLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFTSA 185
Query: 180 WMVLAASGVEHDQLVSVEEPLLS 202
M L GV H L +V E LL+
Sbjct: 186 RMALVGLGVSHPVLKNVAEQLLN 208
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 120 ELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAP 179
+L D + A +NPQ+ + E + +A Y LA+ L P+ I ++ S + +F ++T+
Sbjct: 126 QLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFTSA 185
Query: 180 WMVLAASGVEHDQLVSVEEPLLS 202
M L GV H L +V E LL+
Sbjct: 186 RMALVGLGVSHPVLKNVAEQLLN 208
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 120 ELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAP 179
+L D + A +NPQ+ + E + +A Y LAN L P+ I ++ + ++ ++T+
Sbjct: 157 QLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSA 216
Query: 180 WMVLAASGVEHDQLVSVEEPLLS 202
M L GV H L V E L+
Sbjct: 217 RMALIGLGVSHPVLKQVAEQFLN 239
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 37/178 (20%)
Query: 61 FYVDCGSIYESPISFVKTDLLERMA----------FRSTRD----RSNIQASPSREQMGC 106
++ GS YE+ + + LL R+A F+ TR + + +RE M
Sbjct: 49 LFIKAGSRYENSNNLGTSHLL-RLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAY 107
Query: 107 SFAALETYVPEMVELLTDISEA----------------------TRNPQSLLSEAIFSAC 144
+ L V ++E L +++ A +NPQ+ + E + +A
Sbjct: 108 TVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAA 167
Query: 145 YSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLVSVEEPLLS 202
Y LAN L P+ I ++ + ++ ++T+ M L GV H L V E L+
Sbjct: 168 YRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN 225
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 120 ELLTDISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAP 179
+L D + A +NPQ+ + E + +A Y LAN L P+ I ++ + ++ ++T+
Sbjct: 127 QLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSA 186
Query: 180 WMVLAASGVEHDQLVSVEEPLLS 202
M L GV H L V E L+
Sbjct: 187 RMALIGLGVSHPVLKQVAEQFLN 209
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 38/170 (22%)
Query: 62 YVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQMGCSF 108
+V GS YES + LE M F+ T RS + A S+E C +
Sbjct: 29 WVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYT-CYY 87
Query: 109 A-ALETYVPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACY 145
A L+ + + ++ L+D I P ++ + + SA Y
Sbjct: 88 AKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATY 147
Query: 146 SV-VLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASGVEHDQLV 194
L P+L ++ N +++ + YT ++V++ +G HD+L+
Sbjct: 148 GKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVHDELI 197
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 37/183 (20%)
Query: 62 YVDCGSIYESPISFVKTDLLERMAFRSTRDR-------------SNIQASPSREQMGCSF 108
++ GS YE+ + +E +AF+ T+ R ++ SREQ
Sbjct: 40 WIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPCAAFEKEVESMGAHFNGYTSREQTAFYI 99
Query: 109 AALETYVPEMVELLTDI--------SEATRNPQSLLSE----------AIFSACYSVVLA 150
AL +P++VELL D+ S+ + +L E F ++
Sbjct: 100 KALSKDMPKVVELLADVVQNCALEESQIEKERGVILQELKEMDNDMTNVTFDYLHATAFQ 159
Query: 151 NPLLAPECA-----ISRLNSTLIKEFFAENYTAPWMVLAAS-GVEHDQLVSVEEPLLSDL 204
LA I L + + ++ AP MVLAA+ G+ H +LV S +
Sbjct: 160 GTALARTVEGTTENIKHLTRADLASYIDTHFKAPRMVLAAAGGISHKELVDAARQHFSGV 219
Query: 205 PIS 207
+
Sbjct: 220 SFT 222
>pdb|3EO2|A Chain A, Crystal Structure Of The Rhogef Domain Of Human
Neuroepithelial Cell- Transforming Gene 1 Protein
Length = 231
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 67 SIYESPISFVKTDLLE--RMAFRSTRDRSNIQASPSREQMGCSFAALETYVPEMVELLTD 124
+IYE +S + DL+E ++A ++ D + S E++ F L++Y+P +LLT
Sbjct: 36 AIYE--MSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDSYIPLHEDLLTR 93
Query: 125 ISEATR 130
I EAT+
Sbjct: 94 IGEATK 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,120,420
Number of Sequences: 62578
Number of extensions: 268904
Number of successful extensions: 852
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 25
length of query: 353
length of database: 14,973,337
effective HSP length: 100
effective length of query: 253
effective length of database: 8,715,537
effective search space: 2205030861
effective search space used: 2205030861
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)