Query 044668
Match_columns 353
No_of_seqs 325 out of 1669
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:19:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 8.3E-48 2.8E-52 382.0 30.6 293 57-349 27-452 (475)
2 3hdi_A Processing protease; CA 100.0 6.2E-47 2.1E-51 369.2 29.1 288 37-341 9-411 (421)
3 3eoq_A Putative zinc protease; 100.0 4E-46 1.4E-50 362.2 27.8 281 38-335 10-405 (406)
4 1pp9_A Ubiquinol-cytochrome C 100.0 3E-45 1E-49 360.3 27.7 303 38-350 22-444 (446)
5 1hr6_B Beta-MPP, mitochondrial 100.0 5.9E-44 2E-48 350.1 29.9 305 37-348 14-442 (443)
6 3ami_A Zinc peptidase; alpha/b 100.0 1.5E-43 5E-48 348.2 24.5 289 37-342 14-430 (445)
7 1pp9_B Ubiquinol-cytochrome C 100.0 6.2E-41 2.1E-45 327.8 28.1 283 57-343 45-439 (439)
8 3cx5_A Cytochrome B-C1 complex 100.0 5.2E-41 1.8E-45 327.3 24.8 306 23-350 6-429 (431)
9 3gwb_A Peptidase M16 inactive 100.0 2.1E-40 7.3E-45 323.5 24.7 286 38-340 22-427 (434)
10 3amj_B Zinc peptidase inactive 100.0 3.4E-39 1.2E-43 314.3 24.6 288 22-339 8-419 (424)
11 1q2l_A Protease III; hydrolase 100.0 2.9E-37 1E-41 329.6 25.3 282 36-336 27-441 (939)
12 3go9_A Insulinase family prote 100.0 1.8E-37 6.1E-42 309.7 21.6 293 21-348 29-462 (492)
13 3d3y_A Uncharacterized protein 100.0 5.8E-35 2E-39 283.8 24.0 263 24-319 9-387 (425)
14 3cx5_B Cytochrome B-C1 complex 100.0 7.7E-36 2.6E-40 284.0 14.3 252 57-343 13-352 (352)
15 2fge_A Atprep2;, zinc metallop 100.0 5.5E-34 1.9E-38 306.3 22.4 259 36-316 44-435 (995)
16 3cww_A Insulysin, insulin-degr 100.0 1.8E-33 6.3E-38 301.9 22.9 259 36-311 41-412 (990)
17 3s5m_A Falcilysin; M16 metallo 100.0 1.6E-32 5.6E-37 296.2 23.3 264 37-319 94-543 (1193)
18 1q2l_A Protease III; hydrolase 99.9 1.4E-21 4.7E-26 208.5 14.5 248 57-319 525-865 (939)
19 2fge_A Atprep2;, zinc metallop 99.8 7.3E-21 2.5E-25 204.3 15.1 278 37-339 560-980 (995)
20 3cww_A Insulysin, insulin-degr 99.7 3E-18 1E-22 183.8 11.5 263 57-337 543-936 (990)
21 3s5m_A Falcilysin; M16 metallo 99.7 4.1E-18 1.4E-22 184.2 6.7 272 38-334 726-1173(1193)
22 3ih6_A Putative zinc protease; 99.4 8.5E-13 2.9E-17 114.7 11.2 104 218-334 36-194 (197)
23 3ih6_A Putative zinc protease; 96.2 0.035 1.2E-06 46.9 10.6 126 58-187 26-192 (197)
24 3hdi_A Processing protease; CA 95.1 0.12 4E-06 49.0 10.6 87 101-189 293-405 (421)
25 3eoq_A Putative zinc protease; 94.7 0.17 5.8E-06 47.7 10.4 85 102-188 294-404 (406)
26 3amj_B Zinc peptidase inactive 94.2 0.14 4.7E-06 48.4 8.5 85 102-187 303-412 (424)
27 3gwb_A Peptidase M16 inactive 93.8 0.13 4.3E-06 48.8 7.6 88 102-190 310-423 (434)
28 1pp9_A Ubiquinol-cytochrome C 91.4 0.67 2.3E-05 44.1 9.0 85 103-189 319-429 (446)
29 1hr6_B Beta-MPP, mitochondrial 91.3 0.54 1.8E-05 44.6 8.2 86 102-189 315-429 (443)
30 3cx5_A Cytochrome B-C1 complex 91.2 0.66 2.3E-05 43.6 8.7 86 102-189 300-414 (431)
31 3ami_A Zinc peptidase; alpha/b 90.7 0.63 2.2E-05 44.3 8.1 86 103-189 311-423 (445)
32 1pp9_B Ubiquinol-cytochrome C 88.4 0.81 2.8E-05 43.2 6.9 84 103-189 321-431 (439)
33 1hr6_A Alpha-MPP, mitochondria 87.6 1.7 6E-05 41.7 8.7 85 102-188 314-437 (475)
34 3d3y_A Uncharacterized protein 83.0 4.6 0.00016 37.5 9.1 125 58-187 256-420 (425)
35 3go9_A Insulinase family prote 82.3 3 0.0001 40.5 7.6 30 158-187 417-446 (492)
36 3cx5_B Cytochrome B-C1 complex 48.4 50 0.0017 29.5 7.8 70 272-347 93-185 (352)
37 3ov5_A VIRB7 (XAC2622), unchar 36.0 34 0.0012 24.3 3.3 45 143-187 30-74 (85)
38 2l4w_A Uncharacterized protein 33.7 36 0.0012 25.6 3.4 45 143-187 60-104 (120)
39 1qez_A Ppase, S-ppase, protein 26.5 40 0.0014 27.8 2.9 49 156-204 119-169 (173)
40 3d53_A Inorganic pyrophosphata 25.5 76 0.0026 26.1 4.4 46 156-201 123-170 (173)
41 2prd_A Pyrophosphate phosphohy 24.7 63 0.0021 26.7 3.7 47 156-202 120-170 (174)
42 1sxv_A Inorganic pyrophosphata 24.4 79 0.0027 26.0 4.2 49 156-204 117-167 (172)
43 3gnn_A Nicotinate-nucleotide p 23.7 67 0.0023 28.9 4.0 38 160-199 235-273 (298)
44 3fq3_A Inorganic pyrophosphata 22.3 50 0.0017 27.9 2.7 50 155-204 143-194 (197)
45 3fhk_A UPF0403 protein YPHP; d 20.4 80 0.0027 25.0 3.3 32 176-208 76-107 (147)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=8.3e-48 Score=382.03 Aligned_cols=293 Identities=31% Similarity=0.432 Sum_probs=258.6
Q ss_pred CceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCcceeEEEeecccCCHHHHHHHHH
Q 044668 57 LPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQMGCSFAALETYVPEMVELLT 123 (353)
Q Consensus 57 v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~t~~~~~~~~~~l~~~l~ll~ 123 (353)
+++.++|++|+++|+++..|++||+|||+|+||++++ .+|++|++|.|+|++++++++++.+|++|+
T Consensus 27 ~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~ 106 (475)
T 1hr6_A 27 SALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMS 106 (475)
T ss_dssp EEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHHHHH
T ss_pred EEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999988 899999999999999999999999999999
Q ss_pred H----------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCC
Q 044668 124 D----------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPECAISRLNSTLIKEFFAENYTAPW 180 (353)
Q Consensus 124 d----------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n 180 (353)
| ++...++|..++.+.+++.+| +|||+++.+|+++.|++++.++|++||++||+|+|
T Consensus 107 d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n 186 (475)
T 1hr6_A 107 ETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186 (475)
T ss_dssp HHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHCCGGG
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhCCccc
Confidence 9 233458999999999999999 68999999999999999999999999999999999
Q ss_pred eEEEEEccCHHHHHHHHHHhhCCCCCCCCC-C--C-----------------Cc----cc-------cCCCCchHHHHHH
Q 044668 181 MVLAASGVEHDQLVSVEEPLLSDLPISILT-K--S-----------------PD----LC-------TLEDKDAMTLTVT 229 (353)
Q Consensus 181 ~~lvivGid~~el~~~v~~~f~~l~~~~~~-~--~-----------------p~----~i-------~~~~~d~~~~~vl 229 (353)
|+|+++|+++++++++++++|++||....+ . . +. +| ...++|++++.|+
T Consensus 187 ~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl 266 (475)
T 1hr6_A 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATL 266 (475)
T ss_dssp EEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCCEEEEEEEECCCTTCTTHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccceEEEEEEecCCCCCccHHHHHHH
Confidence 999999999999999999999999754221 0 0 10 11 2356899999999
Q ss_pred HHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ec----ee----ee-----------------------ecC---
Q 044668 230 QMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV----YF----CG-----------------------ITP--- 274 (353)
Q Consensus 230 ~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~----y~----fg-----------------------l~~--- 274 (353)
+.||||+++|+|||||+|+.||||++||+++|++|+ .+ |. |+ +..
T Consensus 267 ~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 346 (475)
T 1hr6_A 267 QTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKD 346 (475)
T ss_dssp HHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTT
T ss_pred HHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999998 21 21 22 345
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc---------------------cccC----------
Q 044668 275 GEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP---------------------KLIL---------- 323 (353)
Q Consensus 275 ~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~---------------------~~l~---------- 323 (353)
+++|++||++||+++++++...+++...+++.++++++.+|.+.+ +++.
T Consensus 347 ~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~ 426 (475)
T 1hr6_A 347 LRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGK 426 (475)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHhhhccccccccC
Confidence 679999999999999999999999999999999988776787654 5563
Q ss_pred CCceEEEEcCCCCCCCHHHHHHHHhc
Q 044668 324 SPLTMASYGDVINVPSYDAESAASSS 349 (353)
Q Consensus 324 ~~~~~~~vG~~~~~p~~~~~~~~~~~ 349 (353)
.+++++++|+...+|+++++++.+.+
T Consensus 427 ~~~~~~v~g~~~~~~~~~~~~~~~~~ 452 (475)
T 1hr6_A 427 GRATVVMQGDRGSFGDVENVLKAYGL 452 (475)
T ss_dssp CCCEEEEESCGGGGCCHHHHHHHTTC
T ss_pred CCcEEEEECCcccCcCHHHHHHHhcc
Confidence 38999999999999999999988753
No 2
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=6.2e-47 Score=369.22 Aligned_cols=288 Identities=18% Similarity=0.264 Sum_probs=250.3
Q ss_pred CCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCcce
Q 044668 37 TSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQ 103 (353)
Q Consensus 37 ~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~ 103 (353)
||++|+..+.|+.++ +++.++|++|+++|++++.|+|||+|||+|+||++++ .+|++|++|.
T Consensus 9 NGl~v~~~~~~~~~~-----~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~d~ 83 (421)
T 3hdi_A 9 NGVRIITEKMSTVRS-----VSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEY 83 (421)
T ss_dssp TSCEEEEEECTTCSE-----EEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECSSC
T ss_pred CCCEEEEEECCCCCE-----EEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeeccce
Confidence 355555555555555 8999999999999999999999999999999999988 8899999999
Q ss_pred eEEEeecccCCHHHHHHHHHH----------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChHhh
Q 044668 104 MGCSFAALETYVPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPECAI 160 (353)
Q Consensus 104 t~~~~~~~~~~l~~~l~ll~d----------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~l 160 (353)
|.|++++++++++.+|+++++ ++...++|..++.+.+.+.+| +|||+++.+|++++|
T Consensus 84 t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l 163 (421)
T 3hdi_A 84 TCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETL 163 (421)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHH
Confidence 999999999999999999999 334568999999999999999 689999999999999
Q ss_pred cccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCCC---CCc---------------cc-----
Q 044668 161 SRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILTK---SPD---------------LC----- 216 (353)
Q Consensus 161 ~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~~---~p~---------------~i----- 216 (353)
++++.++|++||+++|+|+||+|+++| ++ +++.++++++|++||....+. .|. ++
T Consensus 164 ~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~ 242 (421)
T 3hdi_A 164 NSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLGYP 242 (421)
T ss_dssp HHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCCSEEEEEEEEE
T ss_pred HhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEEEEe
Confidence 999999999999999999999999999 99 999999999999998654321 111 11
Q ss_pred --cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ec----ee----ee--------------
Q 044668 217 --TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV----YF----CG-------------- 271 (353)
Q Consensus 217 --~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~----y~----fg-------------- 271 (353)
..+++|++++.|++.+|||+ ++|||+++|||++|++|+ .+ +. |+
T Consensus 243 ~~~~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~ 311 (421)
T 3hdi_A 243 GLPIGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLV 311 (421)
T ss_dssp CCCTTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHHHH
T ss_pred cCCCCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHHHHHH
Confidence 34569999999999999998 899999999999999998 22 11 22
Q ss_pred ---------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc---------------------cc
Q 044668 272 ---------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP---------------------KL 321 (353)
Q Consensus 272 ---------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~---------------------~~ 321 (353)
++.+++|++||++||+.+++++..+++++..++..++.+.+..|...+ ++
T Consensus 312 ~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~ 391 (421)
T 3hdi_A 312 YSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKIL 391 (421)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567899999999999999999999999999999999888777676543 55
Q ss_pred cCCCceEEEEcCCCCCCCHH
Q 044668 322 ILSPLTMASYGDVINVPSYD 341 (353)
Q Consensus 322 l~~~~~~~~vG~~~~~p~~~ 341 (353)
++++++++++|+...+|+++
T Consensus 392 ~~~~~~~~vvgp~~~ip~~~ 411 (421)
T 3hdi_A 392 LSASPSISLINANGELPKAL 411 (421)
T ss_dssp TTSCCEEEEEESSCSCCSCS
T ss_pred cccCcEEEEECchhcCcchh
Confidence 67789999999999999864
No 3
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=4e-46 Score=362.24 Aligned_cols=281 Identities=18% Similarity=0.179 Sum_probs=241.0
Q ss_pred CCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCccee
Q 044668 38 SSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQM 104 (353)
Q Consensus 38 ~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~t 104 (353)
|++|+..+.|+.++ +++.++|++|+++|++++.|+|||+|||+|+||++++ .+|++|++|+|
T Consensus 10 Gl~v~~~~~~~~~~-----~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~t 84 (406)
T 3eoq_A 10 GLRVIAEVVPGARS-----VALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEAT 84 (406)
T ss_dssp SCEEEEEECTTCSC-----EEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSCE
T ss_pred CCEEEEEECCCCCe-----EEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecCCeE
Confidence 44444444544444 8999999999999999999999999999999999998 88999999999
Q ss_pred EEEeecccCCHHHHHHHHHH---------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChHhhcc
Q 044668 105 GCSFAALETYVPEMVELLTD---------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPECAISR 162 (353)
Q Consensus 105 ~~~~~~~~~~l~~~l~ll~d---------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~l~~ 162 (353)
.|++++++++++.+|++++| ++...++|...+.+.+++.+| +|||+++..|++++|++
T Consensus 85 ~y~~~~~~~~l~~~l~ll~d~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~ 164 (406)
T 3eoq_A 85 VYYGAVLPEFAYDLLGLFAKLLRPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITA 164 (406)
T ss_dssp EEEEEECGGGHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHH
T ss_pred EEEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhh
Confidence 99999999999999999988 334568999999999999999 68999999999999999
Q ss_pred cCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCCC-----CCc--------------cc------
Q 044668 163 LNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILTK-----SPD--------------LC------ 216 (353)
Q Consensus 163 it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~~-----~p~--------------~i------ 216 (353)
++.++|++||++||+|+||+|+++| +|++++.++++++|++||..+.+. .+. ++
T Consensus 165 ~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~ 244 (406)
T 3eoq_A 165 LTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVALFPG 244 (406)
T ss_dssp CCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTTCSSEEEEEEEEC
T ss_pred CCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecCCccceEEEEEecC
Confidence 9999999999999999999999999 999999999999999998653221 010 11
Q ss_pred -cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ec----ee----ee---------------
Q 044668 217 -TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV----YF----CG--------------- 271 (353)
Q Consensus 217 -~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~----y~----fg--------------- 271 (353)
...++|++++.|++.+|||+ ++|||+++||| +|++|+ .+ |. |+
T Consensus 245 ~~~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~ 312 (406)
T 3eoq_A 245 VAYQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLA 312 (406)
T ss_dssp CCTTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcchHHHHHH
Confidence 34568999999999999998 89999999999 999998 22 11 22
Q ss_pred --------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc---------------------ccc
Q 044668 272 --------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP---------------------KLI 322 (353)
Q Consensus 272 --------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~---------------------~~l 322 (353)
++.+++|++||++||+++++++..++|++..++..++.+.+..+.+.. +++
T Consensus 313 ~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l 392 (406)
T 3eoq_A 313 VLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGF 392 (406)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHHhc
Confidence 467899999999999999999999999999999999988887666544 677
Q ss_pred CCCceEEEEcCCC
Q 044668 323 LSPLTMASYGDVI 335 (353)
Q Consensus 323 ~~~~~~~~vG~~~ 335 (353)
..+..++++|+..
T Consensus 393 ~~~~~~~vvGp~~ 405 (406)
T 3eoq_A 393 LEKGLYYLVLPHG 405 (406)
T ss_dssp TTSCEEEEEECCC
T ss_pred CcccEEEEECCCC
Confidence 5433399999864
No 4
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=3e-45 Score=360.33 Aligned_cols=303 Identities=23% Similarity=0.318 Sum_probs=255.1
Q ss_pred CCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCccee
Q 044668 38 SSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQM 104 (353)
Q Consensus 38 ~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~t 104 (353)
|++|+..+.|+ ++ +++.++|++|+++|++++.|++||+|||+|+||++++ .+|++|++|.|
T Consensus 22 Gl~v~~~~~~~-~~-----~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~~d~t 95 (446)
T 1pp9_A 22 GLRVASEQSSQ-PT-----CTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHT 95 (446)
T ss_dssp CCEEEEEECSC-SE-----EEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEECSSCE
T ss_pred CCEEEEEeCCC-CE-----EEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEcCCeE
Confidence 44555544443 34 7899999999999999999999999999999999988 88999999999
Q ss_pred EEEeecccCCHHHHHHHHHH----------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChHhhc
Q 044668 105 GCSFAALETYVPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPECAIS 161 (353)
Q Consensus 105 ~~~~~~~~~~l~~~l~ll~d----------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~l~ 161 (353)
.|+++++.++++.+|++++| ++...++|...+.+.+++.+| +|||+++..|+.++|+
T Consensus 96 ~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~ 175 (446)
T 1pp9_A 96 AYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVR 175 (446)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHH
T ss_pred EEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHH
Confidence 99999999999999999999 233558999999999999999 6899999999999999
Q ss_pred ccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCCC------CCc----------------cc--
Q 044668 162 RLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILTK------SPD----------------LC-- 216 (353)
Q Consensus 162 ~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~~------~p~----------------~i-- 216 (353)
+++.++|++||++||+|+||+|+++| ++++++.++++++|++|+....+. .|. +|
T Consensus 176 ~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 255 (446)
T 1pp9_A 176 KLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVAI 255 (446)
T ss_dssp HCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTSSSEEEEE
T ss_pred hCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecCCccceEEEE
Confidence 99999999999999999999999999 999999999999999997543210 110 11
Q ss_pred -----cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ec----ee----ee-----------
Q 044668 217 -----TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV----YF----CG----------- 271 (353)
Q Consensus 217 -----~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~----y~----fg----------- 271 (353)
...++|++++.|++.+|||+.+ +.| +|+|++|||+++||+ .|++|+ .+ |. |+
T Consensus 256 ~~~~~~~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~-~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~ 332 (446)
T 1pp9_A 256 AVEGPGWAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAAT-NKLCQSFQTFNICYADTGLLGAHFVCDHMSID 332 (446)
T ss_dssp EEEECCTTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHH-HTCCSEEEEEEEECSSCEEEEEEEEECTTSHH
T ss_pred EEecCCCCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHh-cCCeEEEEEecccCCCCeEEEEEEEECHHHHH
Confidence 2356899999999999998644 333 456799999999996 589997 11 11 22
Q ss_pred ------------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc--------------------
Q 044668 272 ------------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP-------------------- 319 (353)
Q Consensus 272 ------------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~-------------------- 319 (353)
+.. ++|++||++||+.+++++...++++..+++.++.+++.+|.+.+
T Consensus 333 ~~~~~i~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a 411 (446)
T 1pp9_A 333 DMMFVLQGQWMRLCT-SATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVC 411 (446)
T ss_dssp HHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCHHHHHHHH
Confidence 344 59999999999999999999999999999999988766787654
Q ss_pred -ccc-CCCceEEEEcCCCCCCCHHHHHHHHhcc
Q 044668 320 -KLI-LSPLTMASYGDVINVPSYDAESAASSSQ 350 (353)
Q Consensus 320 -~~l-~~~~~~~~vG~~~~~p~~~~~~~~~~~~ 350 (353)
+++ +++++++++|+...+|.+++|+.+++.+
T Consensus 412 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 444 (446)
T 1pp9_A 412 SKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWL 444 (446)
T ss_dssp HHHTTTCCCEEEEEESCTTSCCHHHHHHTTC--
T ss_pred HHHcCCCCcEEEEECCcccCcCHHHHHhhHHhh
Confidence 556 4689999999999999999999987643
No 5
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=5.9e-44 Score=350.13 Aligned_cols=305 Identities=24% Similarity=0.342 Sum_probs=258.3
Q ss_pred CCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCcce
Q 044668 37 TSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQ 103 (353)
Q Consensus 37 ~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~ 103 (353)
||++|+..+.|..++ +.+.++|++|+++|+++..|++||++||+|+||++++ .+|++|++|+
T Consensus 14 NGl~v~~~~~~~~~~-----~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~~~~ 88 (443)
T 1hr6_B 14 NGLTIATEYIPNTSS-----ATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNAYTSREN 88 (443)
T ss_dssp TSCEEEEEECSSCSE-----EEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEEEECSSE
T ss_pred CCCEEEEEECCCCCE-----EEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEEEECCCe
Confidence 355555555555445 7999999999999999999999999999999999998 8899999999
Q ss_pred eEEEeecccCCHHHHHHHHHH----------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChHhh
Q 044668 104 MGCSFAALETYVPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPECAI 160 (353)
Q Consensus 104 t~~~~~~~~~~l~~~l~ll~d----------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~l 160 (353)
+.|++++++++++.+|+++.+ ++...++|...+.+.+++.+| +|||+++..|+.++|
T Consensus 89 t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i 168 (443)
T 1hr6_B 89 TVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNI 168 (443)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHH
Confidence 999999999999999999999 334558999999999999999 689999999999999
Q ss_pred cccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCC--------CCCc----------------c
Q 044668 161 SRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILT--------KSPD----------------L 215 (353)
Q Consensus 161 ~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~--------~~p~----------------~ 215 (353)
++++.++|++||+++|+|+||+|+++| ++++++.++++++|++||....+ ..|. +
T Consensus 169 ~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (443)
T 1hr6_B 169 KSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTH 248 (443)
T ss_dssp HHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECTTCSEEE
T ss_pred hhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccCCccceE
Confidence 999999999999999999999999999 99999999999999999754211 1110 1
Q ss_pred c-------cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ec----ee----ee--------
Q 044668 216 C-------TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV----YF----CG-------- 271 (353)
Q Consensus 216 i-------~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~----y~----fg-------- 271 (353)
| ..+++|++++.|++.+|||+.+ ..++|++++|||+++|||++|++|+ .+ |. |+
T Consensus 249 v~~~~~~~~~~~~~~~~l~vl~~iLg~~~r--~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~~~~~~~ 326 (443)
T 1hr6_B 249 IAIALEGVSWSAPDYFVALATQAIVGNWDR--AIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMYIVTDSN 326 (443)
T ss_dssp EEEEEECCCTTCTTHHHHHHHHHHHCEEET--TTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEEEEEETT
T ss_pred EEEEEecCCCCCccHHHHHHHHHHhCCCcc--cCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEEEEecCC
Confidence 1 2356899999999999998542 2234567999999999999999998 11 11 11
Q ss_pred -----------------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc---------------
Q 044668 272 -----------------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP--------------- 319 (353)
Q Consensus 272 -----------------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~--------------- 319 (353)
+..+++|++||++||+.+++++...++++..+++.++.+++.+|.+.+
T Consensus 327 ~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~d 406 (443)
T 1hr6_B 327 EHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDD 406 (443)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCHHH
Confidence 456789999999999999999999999999999999987766776554
Q ss_pred ------ccc-CCCceEEEEcCCCCCCCHHHHHHHHh
Q 044668 320 ------KLI-LSPLTMASYGDVINVPSYDAESAASS 348 (353)
Q Consensus 320 ------~~l-~~~~~~~~vG~~~~~p~~~~~~~~~~ 348 (353)
+++ +++++++++|+...+|++++|+.+++
T Consensus 407 v~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 442 (443)
T 1hr6_B 407 IIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442 (443)
T ss_dssp HHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCcEEEEECCcccCccHHHHHHHhc
Confidence 566 46899999999999999999998764
No 6
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=1.5e-43 Score=348.18 Aligned_cols=289 Identities=18% Similarity=0.198 Sum_probs=240.9
Q ss_pred CCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCcce
Q 044668 37 TSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQ 103 (353)
Q Consensus 37 ~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~ 103 (353)
||++|+..|.+..+. +.+.++|++|+++|++++.|+|||+|||+|+||++++ .+|++|++|.
T Consensus 14 NGl~v~~~~~~~~~~-----v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~d~ 88 (445)
T 3ami_A 14 NGLKVVVREDHRAPT-----LVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDY 88 (445)
T ss_dssp TSCEEEEEECTTSSE-----EEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEEECSSC
T ss_pred CCCEEEEEECCCCCe-----EEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccccCCCe
Confidence 345555555544555 8999999999999999999999999999999999988 8999999999
Q ss_pred eEEEeecccCCHHHHHHHHHH-------------------HHH----HhcChHHHHHHHHHHHhc-CCCCCCCCCCChHh
Q 044668 104 MGCSFAALETYVPEMVELLTD-------------------ISE----ATRNPQSLLSEAIFSACY-SVVLANPLLAPECA 159 (353)
Q Consensus 104 t~~~~~~~~~~l~~~l~ll~d-------------------i~~----~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~ 159 (353)
|.|++++++++++.+|+++++ +++ ..++|...+.+.+++.+| +|||+++.+|++++
T Consensus 89 t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~ 168 (445)
T 3ami_A 89 TAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMND 168 (445)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHH
Confidence 999999999999999999999 222 346899999999999999 68999999999999
Q ss_pred hcccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCCC-----CC-----c-----------cc-
Q 044668 160 ISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILTK-----SP-----D-----------LC- 216 (353)
Q Consensus 160 l~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~~-----~p-----~-----------~i- 216 (353)
|++++.++|++||++||+|+||+|+||| +|+++++++++++|++||....+. .| + +|
T Consensus 169 l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 248 (445)
T 3ami_A 169 IQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELPYLA 248 (445)
T ss_dssp HHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEECSSCEEE
T ss_pred HhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCCCccEEE
Confidence 9999999999999999999999999999 999999999999999998643211 11 0 11
Q ss_pred ------c---CC-CCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-----ec-e---e--ee----
Q 044668 217 ------T---LE-DKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-----GV-Y---F--CG---- 271 (353)
Q Consensus 217 ------~---~~-~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-----~~-y---~--fg---- 271 (353)
. .. ++|++++.|++.||||| ++|||+++||+++|++|+ .. + . |+
T Consensus 249 l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~ 317 (445)
T 3ami_A 249 LAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGV 317 (445)
T ss_dssp EEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEE
T ss_pred EEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEE
Confidence 2 34 68899999999999998 899999999999999998 11 1 1 21
Q ss_pred --------------------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc------------
Q 044668 272 --------------------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP------------ 319 (353)
Q Consensus 272 --------------------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~------------ 319 (353)
+..+++|++||++||+++++++..+++++..+++.++.+.+ +|.+.+
T Consensus 318 ~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~v 396 (445)
T 3ami_A 318 PSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEV-LGLSWRDDDRFYQQLRSV 396 (445)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHT-TTCCTTHHHHHHHHHHTC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH-cCCChHHHHHHHHHHHcC
Confidence 45689999999999999999999999999999999997776 453332
Q ss_pred ----------ccc-CCCceEEEEcCCCCCCCHHH
Q 044668 320 ----------KLI-LSPLTMASYGDVINVPSYDA 342 (353)
Q Consensus 320 ----------~~l-~~~~~~~~vG~~~~~p~~~~ 342 (353)
+++ +++++++++|+...+|..++
T Consensus 397 t~~dv~~~a~~~l~~~~~~~~~~~p~~~~~~~~~ 430 (445)
T 3ami_A 397 TAAEVKAAAARLLTDDTLTVANLVPLPPDPKAQQ 430 (445)
T ss_dssp CHHHHHHHHHTTSCSTTEEEEEEEEECC------
T ss_pred CHHHHHHHHHHHcCcCCeEEEEEccCccCccccc
Confidence 567 46899999999888887554
No 7
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=6.2e-41 Score=327.78 Aligned_cols=283 Identities=23% Similarity=0.344 Sum_probs=246.0
Q ss_pred CceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCcceeEEEeecccCCHHHHHHHHH
Q 044668 57 LPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQMGCSFAALETYVPEMVELLT 123 (353)
Q Consensus 57 v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~t~~~~~~~~~~l~~~l~ll~ 123 (353)
+.+.++|++|+++|+++..|++||++||+|+||++++ ++|+++++|.+.|++++++++++.+|+++.
T Consensus 45 ~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~ 124 (439)
T 1pp9_B 45 SRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLL 124 (439)
T ss_dssp EEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEEecceEEEEEEEeehhhHHHHHHHHH
Confidence 7899999999999999999999999999999999987 789999999999999999999999999999
Q ss_pred H----------------------HHHHhcChHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCe
Q 044668 124 D----------------------ISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWM 181 (353)
Q Consensus 124 d----------------------i~~~~~~p~~~~~~~l~~~~f~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~ 181 (353)
+ ++...++|...+.+.+++.+|+|||+++..|+.++|++++.++|++||+++|+|+|+
T Consensus 125 ~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~it~~~l~~f~~~~y~~~~~ 204 (439)
T 1pp9_B 125 NVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHFTSARM 204 (439)
T ss_dssp HHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCCGGGTTTCCHHHHHHHHHHHCSGGGE
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCCHHHHhhcCHHHHHHHHHHhCCCCce
Confidence 9 233457899999999999999889999999999999999999999999999999999
Q ss_pred EEEEEccCHHHHHHHHHHhhCCCCCCCCCC---CC---c-----------cc-------cCCCCchHHHHHHHHhhcCCC
Q 044668 182 VLAASGVEHDQLVSVEEPLLSDLPISILTK---SP---D-----------LC-------TLEDKDAMTLTVTQMLLEGGG 237 (353)
Q Consensus 182 ~lvivGid~~el~~~v~~~f~~l~~~~~~~---~p---~-----------~i-------~~~~~d~~~~~vl~~iLGgg~ 237 (353)
+|+++|-+++++.++++++|+ ||.+..+. .+ . ++ ..+++|++++.|++.+|||++
T Consensus 205 ~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~ 283 (439)
T 1pp9_B 205 ALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGP 283 (439)
T ss_dssp EEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCCSEEEEEEEEECCCTTSHHHHHHHHHHHHHCCSC
T ss_pred EEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCccceEEEEEecCCCCCchHHHHHHHHHHHhCCCc
Confidence 999999888999999999998 97543211 00 0 11 235689999999999999998
Q ss_pred CCCCCCCCCCcccHHHHHHHhhCCceee-ec-e---e----ee-----------------------ecCCCCCHHHHHHH
Q 044668 238 SFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV-Y---F----CG-----------------------ITPGEVNQVQLDRA 285 (353)
Q Consensus 238 s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~-y---~----fg-----------------------l~~~~is~~EL~~a 285 (353)
+|++|+ |++|||+++|||+.|++|+ .+ + . |+ +..+++|++||+++
T Consensus 284 ~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~a 360 (439)
T 1pp9_B 284 HVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAA 360 (439)
T ss_dssp SBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred ccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999887 6999999999999999998 11 1 1 22 45679999999999
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc---------------------cccCCCceEEEEcCCCCCCCHHHH
Q 044668 286 VQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP---------------------KLILSPLTMASYGDVINVPSYDAE 343 (353)
Q Consensus 286 K~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~---------------------~~l~~~~~~~~vG~~~~~p~~~~~ 343 (353)
|+.+++++...++++..+++.++...+..|.+.. +++.++++++++|+.+.+|+++++
T Consensus 361 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~v~g~~~~~~~~~~~ 439 (439)
T 1pp9_B 361 KNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGHTPFIDEL 439 (439)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHHHSCEEEEEEECGGGCCCGGGC
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEECCcccCCccccC
Confidence 9999999999999999999999987776565443 455578999999999999999864
No 8
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=5.2e-41 Score=327.29 Aligned_cols=306 Identities=13% Similarity=0.146 Sum_probs=255.0
Q ss_pred CCCCceecccCCCCCCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC------cCc
Q 044668 23 SSGGFYSWLSGEQSTSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS------NIQ 96 (353)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~------~~~ 96 (353)
-+.|+++|+.+++ ..| . +.+.++|++|+++|++++.|++||++||+|+||.++. ++|
T Consensus 6 L~NGl~v~~~~~~--~~~----------~-----~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~~~~~~~G~~~n 68 (431)
T 3cx5_A 6 LSNGIVVATEHNP--SAH----------T-----ASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENSAVAAKEGLALS 68 (431)
T ss_dssp EESSSEEEEEECT--TCS----------S-----EEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHHHHHHHTTCEEE
T ss_pred CCCCCEEEEEECC--CCC----------E-----EEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCcccHHHcCCeee
Confidence 3567777777665 222 2 7899999999999999999999999999999976544 899
Q ss_pred cccCcceeEEEeecccCCHHHHHHHHHH-------------------------HHHHhcCh-HHHHHHHHHHHhc-CCCC
Q 044668 97 ASPSREQMGCSFAALETYVPEMVELLTD-------------------------ISEATRNP-QSLLSEAIFSACY-SVVL 149 (353)
Q Consensus 97 a~t~~d~t~~~~~~~~~~l~~~l~ll~d-------------------------i~~~~~~p-~~~~~~~l~~~~f-~~p~ 149 (353)
++|++|.+.|++++++++++.+|+++.+ ++...++| ...+.+.+++.+| +|||
T Consensus 69 a~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~ 148 (431)
T 3cx5_A 69 SNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPL 148 (431)
T ss_dssp EEECSSCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGG
T ss_pred eeecCCeEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999887 12234689 9999999999999 6899
Q ss_pred CCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCCC--CC---c---------
Q 044668 150 ANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILTK--SP---D--------- 214 (353)
Q Consensus 150 g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~~--~p---~--------- 214 (353)
+++..|+.++|++++.++|++||+++|+|+|++|+++| +++++++++++++|++||.+..+. .| .
T Consensus 149 ~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (431)
T 3cx5_A 149 SLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDD 228 (431)
T ss_dssp GSCTTCCHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECT
T ss_pred CCCCCCCHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCC
Confidence 99999999999999999999999999999999999999 999999999999888887543211 11 0
Q ss_pred -----cc-------cCCCCchHHHHHHHHhhcCCCCCCCCCCCCC-cccHHHHHHHhhCCceee-ec----ee----ee-
Q 044668 215 -----LC-------TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKG-VYSRLHRRVLNEIPRVQQ-GV----YF----CG- 271 (353)
Q Consensus 215 -----~i-------~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g-~~SrL~~~lre~~gl~Ys-~~----y~----fg- 271 (353)
.+ ..+++|++++.|++.+|||++ +|+||+| ++|||+++||| +|++|+ .+ +. |+
T Consensus 229 ~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iL~~~~---~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~i 304 (431)
T 3cx5_A 229 TLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYN---AFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWGF 304 (431)
T ss_dssp TSSSEEEEEEEECCCTTCTTHHHHHHHHHHHCEEE---TTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEEE
T ss_pred CCCceEEEEEeecCCCCCccHHHHHHHHHHcCCCc---cCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEEE
Confidence 11 235689999999999999863 4667764 78999999997 499998 11 11 21
Q ss_pred -----------------------ecCCCCCHHHHHHHHHHHHHHHHH--hccCHHHHHHHHHHHHHHcCCCcc-------
Q 044668 272 -----------------------ITPGEVNQVQLDRAVQSTNSAILM--NLESRIVVSEDIDRQVQTHGEMKP------- 319 (353)
Q Consensus 272 -----------------------l~~~~is~~EL~~aK~~l~~~~~~--~~es~~~~a~~l~~~~~~~g~~~~------- 319 (353)
+.. ++|++||+++|+.+++++.. .++++..++..++.+++.+|.+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 383 (431)
T 3cx5_A 305 STATRNVTMIDDLIHFTLKQWNRLTI-SVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKK 383 (431)
T ss_dssp EEEESCTTCHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHH
T ss_pred EEeeCchhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 445 89999999999999999999 999999999999977665676544
Q ss_pred --------------ccc-CCCceEEEEcCCCCCCCHHHHHHHHhcc
Q 044668 320 --------------KLI-LSPLTMASYGDVINVPSYDAESAASSSQ 350 (353)
Q Consensus 320 --------------~~l-~~~~~~~~vG~~~~~p~~~~~~~~~~~~ 350 (353)
+++ +++++++++|+.+.+|++++|+++++.+
T Consensus 384 i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~~~ 429 (431)
T 3cx5_A 384 IDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMSMM 429 (431)
T ss_dssp HHHCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTSCC
T ss_pred HhcCCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHHHhh
Confidence 455 4689999999999999999999987654
No 9
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=2.1e-40 Score=323.50 Aligned_cols=286 Identities=15% Similarity=0.150 Sum_probs=238.2
Q ss_pred CCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCccee
Q 044668 38 SSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQM 104 (353)
Q Consensus 38 ~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~t 104 (353)
|++|+..+.+..++ +.+.+++++|+++| ++..|++||++||+|+||++++ ++|+++++|.+
T Consensus 22 Gl~v~~~~~~~~~~-----~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~~~~~ 95 (434)
T 3gwb_A 22 GAKVLFVEARELPM-----FDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNGAYKDMA 95 (434)
T ss_dssp CCEEEEEECCSSSE-----EEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEEECSSCE
T ss_pred CeEEEEEECCCCCE-----EEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEeeecCCeE
Confidence 34444444444444 89999999999999 8999999999999999999987 88999999999
Q ss_pred EEEeecccCC--HHHHHHHHHH----------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChHh
Q 044668 105 GCSFAALETY--VPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPECA 159 (353)
Q Consensus 105 ~~~~~~~~~~--l~~~l~ll~d----------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~ 159 (353)
.|++++++++ ++.+|+++.+ ++...++|...+.+.+.+.+| +|||+++..|+.++
T Consensus 96 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 175 (434)
T 3gwb_A 96 VASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKS 175 (434)
T ss_dssp EEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTT
T ss_pred EEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHH
Confidence 9999999988 9999999999 334568999999999999999 68999999999999
Q ss_pred hcccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCCCC------Cc-------------cc---
Q 044668 160 ISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILTKS------PD-------------LC--- 216 (353)
Q Consensus 160 l~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~~~------p~-------------~i--- 216 (353)
|++++.++|++||+++|+|+|++|+++| ++++++.++++++|+.||.++.+.. +. .|
T Consensus 176 l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 255 (434)
T 3gwb_A 176 IPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQTSLMLA 255 (434)
T ss_dssp TTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCSSEEEEEEE
T ss_pred HHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCCCceeEEec
Confidence 9999999999999999999999999999 9999999999999999986532211 10 11
Q ss_pred ----cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee--ecee-------ee------------
Q 044668 217 ----TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ--GVYF-------CG------------ 271 (353)
Q Consensus 217 ----~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys--~~y~-------fg------------ 271 (353)
..+++|++++.|++.+|||+ |++||||++|||++|++|+ ..+. |+
T Consensus 256 ~~~~~~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 325 (434)
T 3gwb_A 256 QLGIDRDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEG 325 (434)
T ss_dssp EECCBTTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHH
T ss_pred CcCCCCCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhhHHH
Confidence 34568999999999999986 4899999999999999998 1111 22
Q ss_pred -----------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc---------------------
Q 044668 272 -----------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP--------------------- 319 (353)
Q Consensus 272 -----------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~--------------------- 319 (353)
+..+++|++||+++|+.+++++...++++..++..++...+ +|.+.+
T Consensus 326 ~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~vt~~dv~~~a 404 (434)
T 3gwb_A 326 TLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGF-YNLPLSYLEDFMRQSQELTVEQVKAAM 404 (434)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHhCCHHHHHHHH
Confidence 45679999999999999999999999999999999997654 665543
Q ss_pred -cccC-CCceEEEEcCCCCCCCH
Q 044668 320 -KLIL-SPLTMASYGDVINVPSY 340 (353)
Q Consensus 320 -~~l~-~~~~~~~vG~~~~~p~~ 340 (353)
+++. ++++++++|+...-|-.
T Consensus 405 ~~~l~~~~~~~~vvg~~~~~~~~ 427 (434)
T 3gwb_A 405 NKHLNVDKMVIVSAGPTVAQKPL 427 (434)
T ss_dssp HHHCCGGGCEEEEEECCCCCCC-
T ss_pred HHhcChhhEEEEEEcCccccCcc
Confidence 5664 68999999987665543
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=3.4e-39 Score=314.31 Aligned_cols=288 Identities=16% Similarity=0.199 Sum_probs=238.7
Q ss_pred CCCCCceecccCCCCCCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCC----CCC----
Q 044668 22 SSSGGFYSWLSGEQSTSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTR----DRS---- 93 (353)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~----~~~---- 93 (353)
+-+.|+++|+.+++ . .+. +.+.++|++|+++|+++..|++||++||+|+||+ +++
T Consensus 8 ~L~NGl~v~~~~~~--~----------~~~-----~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~ 70 (424)
T 3amj_B 8 TAPSGAQVYYVENR--T----------LPM-----LDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAI 70 (424)
T ss_dssp ECTTSCEEEEEECC--S----------SSE-----EEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHH
T ss_pred ECCCCcEEEEEECC--C----------CCE-----EEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHH
Confidence 34667777777665 2 223 8899999999999999999999999999999999 887
Q ss_pred ---------cCccccCcceeEEEeecccCCH--HHHHHHHHH----------------------HHHHhcChHHHHHHHH
Q 044668 94 ---------NIQASPSREQMGCSFAALETYV--PEMVELLTD----------------------ISEATRNPQSLLSEAI 140 (353)
Q Consensus 94 ---------~~~a~t~~d~t~~~~~~~~~~l--~~~l~ll~d----------------------i~~~~~~p~~~~~~~l 140 (353)
+++++|+.|.+.|+++++++++ +.+|+++.+ ++...++|...+.+.+
T Consensus 71 ~~~l~~~G~~~~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~ 150 (424)
T 3amj_B 71 ADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRF 150 (424)
T ss_dssp HHHHHHTTCEEEEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHhCCEEEeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 7889999999999999999998 999999999 2334578999999999
Q ss_pred HHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCCC---C---
Q 044668 141 FSACY-SVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILTK---S--- 212 (353)
Q Consensus 141 ~~~~f-~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~~---~--- 212 (353)
.+.+| +|||+++. +.++|++++.++|++||+++|+|+||+|+++| +++++++++++++|++||.+..+. .
T Consensus 151 ~~~~~~~~p~~~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 228 (424)
T 3amj_B 151 TELAYGKHPYGHVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAM 228 (424)
T ss_dssp HHHHHTTSGGGCCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCC
T ss_pred HHhcCCCCCCCCCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Confidence 99999 68999987 89999999999999999999999999999999 999999999999999997543211 0
Q ss_pred Cc-------------cc-------cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ec-ee-
Q 044668 213 PD-------------LC-------TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV-YF- 269 (353)
Q Consensus 213 p~-------------~i-------~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~-y~- 269 (353)
+. .+ ..+++|++++.|++.+|||+ |++|||+++||+++|++|+ .+ +.
T Consensus 229 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~ 298 (424)
T 3amj_B 229 PRATVERIANPATQAHIAIGMPTLKRGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSP 298 (424)
T ss_dssp CCCEEEEEECSSSEEEEEEEEEEEBTTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECC
T ss_pred CCCceEEeeCCCCccEEEeeccCCCCCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeecc
Confidence 11 11 34568999999999999986 4899999999999999998 11 11
Q ss_pred ------ee-----------------------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc-
Q 044668 270 ------CG-----------------------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP- 319 (353)
Q Consensus 270 ------fg-----------------------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~- 319 (353)
|+ +..+++|++||+++|+.+++++....+++..++..++... .+|.+.+
T Consensus 299 ~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 377 (424)
T 3amj_B 299 QKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIG-YYGLPLDY 377 (424)
T ss_dssp BSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHH-HTTCCTTT
T ss_pred CCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHH-HcCCChhH
Confidence 21 4567999999999999999999999999999999998554 4565533
Q ss_pred ---------------------cccC-CCceEEEEcCCCCCCC
Q 044668 320 ---------------------KLIL-SPLTMASYGDVINVPS 339 (353)
Q Consensus 320 ---------------------~~l~-~~~~~~~vG~~~~~p~ 339 (353)
+++. ++++++++|+...+.+
T Consensus 378 ~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~~ 419 (424)
T 3amj_B 378 LDHYTERVQAVTVEQVREAFARHVKRENLITVVVGGKASLEH 419 (424)
T ss_dssp TTSHHHHHHTCCHHHHHHHHHHHCCGGGCEEEEEECC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhcCccceEEEEECChhhhhh
Confidence 5664 6899999998866544
No 11
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.9e-37 Score=329.55 Aligned_cols=282 Identities=11% Similarity=0.027 Sum_probs=234.4
Q ss_pred CCCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC--------------cCccccCc
Q 044668 36 STSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS--------------NIQASPSR 101 (353)
Q Consensus 36 ~~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~--------------~~~a~t~~ 101 (353)
.||++|+..+.|..+. +++.++|++||++|+++..|+|||+|||+|+||++++ .+||+|+.
T Consensus 27 ~NGl~v~~~~~~~~~~-----~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~ 101 (939)
T 1q2l_A 27 DNGMVVLLVSDPQAVK-----SLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHNASTAP 101 (939)
T ss_dssp TTSCEEEEEECTTCSS-----EEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEEEEECS
T ss_pred cCCCEEEEEECCCCCc-----eEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcceEEECC
Confidence 4577777777777766 8999999999999999999999999999999999986 77999999
Q ss_pred ceeEEEeecccCCHHHHHHHHHH----------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 044668 102 EQMGCSFAALETYVPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPEC 158 (353)
Q Consensus 102 d~t~~~~~~~~~~l~~~l~ll~d----------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e 158 (353)
|+|+|++++++++++.+|++|+| ++...++|..++.+.+.+.+| +|||+++.+|+.+
T Consensus 102 d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~ 181 (939)
T 1q2l_A 102 YRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLE 181 (939)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHH
T ss_pred CcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHH
Confidence 99999999999999999999999 334567888899999999999 6899999999999
Q ss_pred hhcc----cCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCCC----CC----c-----------
Q 044668 159 AISR----LNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILTK----SP----D----------- 214 (353)
Q Consensus 159 ~l~~----it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~~----~p----~----------- 214 (353)
+|.+ ++.++|++||++||+|+||+|+|+| +|+++++++++++|++||.+..+. .| .
T Consensus 182 ~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (939)
T 1q2l_A 182 TLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPA 261 (939)
T ss_dssp HHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEEEECCS
T ss_pred HHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEEEEEeC
Confidence 9999 9999999999999999999999999 999999999999999997643211 01 0
Q ss_pred ----cc--------cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ece------e----ee
Q 044668 215 ----LC--------TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GVY------F----CG 271 (353)
Q Consensus 215 ----~i--------~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~y------~----fg 271 (353)
++ ..++.+..++.+++.+||++ ..|+|+++||+ +||+|+ .++ . |+
T Consensus 262 ~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~-----------~~s~L~~~L~~-~gl~~~~~a~~~~~~~~~~g~f~ 329 (939)
T 1q2l_A 262 LPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNR-----------SPGTLSDWLQK-QGLVEGISANSDPIVNGNSGVLA 329 (939)
T ss_dssp SCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCC-----------CTTSHHHHHHH-TTCEEEEEEEEESSTTSSEEEEE
T ss_pred CCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCC-----------CCCcHHHHHHH-cCCchheeeccccccCCCceEEE
Confidence 01 11223667899999999997 78999999996 699998 211 1 21
Q ss_pred --------------------------ecCCCCCHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHcCCCcc-----
Q 044668 272 --------------------------ITPGEVNQVQLDRAVQSTNSAILMNL-ESRIVVSEDIDRQVQTHGEMKP----- 319 (353)
Q Consensus 272 --------------------------l~~~~is~~EL~~aK~~l~~~~~~~~-es~~~~a~~l~~~~~~~g~~~~----- 319 (353)
+...+++++||+++|+.++.++.... ++....++.++.+++ +.+.+
T Consensus 330 i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~ 407 (939)
T 1q2l_A 330 ISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI--RVPVEHTLDA 407 (939)
T ss_dssp EEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT--TSCGGGTTTT
T ss_pred EEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh--cCCHHHHhcC
Confidence 45679999999999999999998876 778888999987754 22211
Q ss_pred -----------------cccCCCceEEEEcCCCC
Q 044668 320 -----------------KLILSPLTMASYGDVIN 336 (353)
Q Consensus 320 -----------------~~l~~~~~~~~vG~~~~ 336 (353)
++..++++++++|+...
T Consensus 408 ~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~~~ 441 (939)
T 1q2l_A 408 VNIADRYDAKAVKERLAMMTPQNARIWYISPKEP 441 (939)
T ss_dssp TTCCCCCCHHHHHHHHHHCSGGGCEEEEECTTCC
T ss_pred chhhhccCHHHHHHHHHhcCHHHcEEEEEcCCCC
Confidence 33356889999997654
No 12
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1.8e-37 Score=309.67 Aligned_cols=293 Identities=15% Similarity=0.087 Sum_probs=226.6
Q ss_pred cCCCCCceecccCCCCCCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------
Q 044668 21 SSSSGGFYSWLSGEQSTSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS------- 93 (353)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~------- 93 (353)
.+-+.|+++|+++.+....|+ +++.++|++||++|++++.|+|||+|||+|+||++++
T Consensus 29 ~~L~NGl~v~~~~~~~~~~~~---------------v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~ 93 (492)
T 3go9_A 29 GKLDNGFSWQLLATPQRPSDR---------------IELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSL 93 (492)
T ss_dssp EECTTSCEEEEEECTTSTTSC---------------EEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred EECCCCCEEEEEECCCCCCCe---------------EEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 455788888887665112222 7899999999999999999999999999999999987
Q ss_pred ----------cCccccCcceeEEEeeccc---CCHHHHHHHHHH-----------HHHH-----------hcChHHHHHH
Q 044668 94 ----------NIQASPSREQMGCSFAALE---TYVPEMVELLTD-----------ISEA-----------TRNPQSLLSE 138 (353)
Q Consensus 94 ----------~~~a~t~~d~t~~~~~~~~---~~l~~~l~ll~d-----------i~~~-----------~~~p~~~~~~ 138 (353)
.+|++|++|+|+|++++++ ++++.+|++|+| ++.. .++|....+
T Consensus 94 ~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~- 172 (492)
T 3go9_A 94 WQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW- 172 (492)
T ss_dssp HHTCSCSSSCCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH-
T ss_pred HHHHHHhcCCCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH-
Confidence 4799999999999999999 579999999999 2221 124544332
Q ss_pred HHHHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCC-C-CC--
Q 044668 139 AIFSACY-SVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISIL-T-KS-- 212 (353)
Q Consensus 139 ~l~~~~f-~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~-~-~~-- 212 (353)
...+| .++++++..+ ++|++++.+||++||++||+|+||+|+++| +|+++++++++++|++||.+.. + ..
T Consensus 173 --~~~~~~~~~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~ 248 (492)
T 3go9_A 173 --RYRLKGSSLIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVAT 248 (492)
T ss_dssp --HHHTTTSTTTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCC
T ss_pred --HHHhccCCcccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCC
Confidence 23456 4577777654 579999999999999999999999999999 9999999999999999986532 1 10
Q ss_pred --Cc---------------cc-------cCCCCchHHH------HHHHHhhcCCCCCCCCCCCCCcccHHHHHHHh--hC
Q 044668 213 --PD---------------LC-------TLEDKDAMTL------TVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLN--EI 260 (353)
Q Consensus 213 --p~---------------~i-------~~~~~d~~~~------~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre--~~ 260 (353)
|. +| +..++|+.++ .|++.+||| ||+.++|| ++
T Consensus 249 ~~~~~~~~~~~~~~~~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg~---------------~L~~~lre~~~~ 313 (492)
T 3go9_A 249 LAPLPPEPVSLMNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALFW---------------HIKQVLEKNNQK 313 (492)
T ss_dssp CCCCCSSCEEEEESSCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHSCCT
T ss_pred CCCCCCCceEEEcCCCCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhhcc
Confidence 10 11 3455776665 799999864 68889999 89
Q ss_pred Cceee-ece-e-------e--e-------------------ecCCCCCHHHHHHHHHHHHHHHHHhccC-----HHHHHH
Q 044668 261 PRVQQ-GVY-F-------C--G-------------------ITPGEVNQVQLDRAVQSTNSAILMNLES-----RIVVSE 305 (353)
Q Consensus 261 gl~Ys-~~y-~-------f--g-------------------l~~~~is~~EL~~aK~~l~~~~~~~~es-----~~~~a~ 305 (353)
|++|+ .++ . | + +..+++|++||+++|+++++++...+++ +..+++
T Consensus 314 gl~y~~~s~~~~~~~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~ 393 (492)
T 3go9_A 314 NLKLGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMS 393 (492)
T ss_dssp TCEEEEEEEEETTEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHH
T ss_pred ccccccCchhhhhhcceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 99998 221 1 1 1 5678999999999999999999988664 678888
Q ss_pred HHHHHHHHcCCCc---c----------------------cccCCCceEEEEcCCCCCC-CHHHHHHHHh
Q 044668 306 DIDRQVQTHGEMK---P----------------------KLILSPLTMASYGDVINVP-SYDAESAASS 348 (353)
Q Consensus 306 ~l~~~~~~~g~~~---~----------------------~~l~~~~~~~~vG~~~~~p-~~~~~~~~~~ 348 (353)
.+.+..+...... + +++..++.+++||+...+. ..+++++.+.
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~~ 462 (492)
T 3go9_A 394 QRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIYN 462 (492)
T ss_dssp HHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHHH
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHHH
Confidence 8886665433221 1 5777778999999888876 4788887664
No 13
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=5.8e-35 Score=283.78 Aligned_cols=263 Identities=13% Similarity=0.111 Sum_probs=218.4
Q ss_pred CCCceecccCCCCCCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCC-C---------
Q 044668 24 SGGFYSWLSGEQSTSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDR-S--------- 93 (353)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~-~--------- 93 (353)
+.|+++|+.+++ ..| . +.+.++|++|+.+|+ .|++||++||+|+||+++ +
T Consensus 9 ~nG~~v~~~~~~--~~~----------~-----~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~ 68 (425)
T 3d3y_A 9 VKGVNLHVIPTE--KYK----------T-----VRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLA 68 (425)
T ss_dssp ETTEEEEEEECS--SCS----------E-----EEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHH
T ss_pred cCCcEEEEEecC--ccc----------e-----EEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHH
Confidence 467777776665 323 3 788999999998765 699999999999999998 4
Q ss_pred -----cCccccCcce----eEEEeecccC-------CHHHHHHHHHH---------------------------HHHHhc
Q 044668 94 -----NIQASPSREQ----MGCSFAALET-------YVPEMVELLTD---------------------------ISEATR 130 (353)
Q Consensus 94 -----~~~a~t~~d~----t~~~~~~~~~-------~l~~~l~ll~d---------------------------i~~~~~ 130 (353)
.+|++++.|. +.|+++++++ +++.+|+++.+ ++...+
T Consensus 69 ~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~ 148 (425)
T 3d3y_A 69 ELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVE 148 (425)
T ss_dssp HTTSCEEEEEEEEETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCceEeeeeeecCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 4778888888 4899999887 69999999988 233457
Q ss_pred ChHHHHHHHHHHHhc-C-CCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCC
Q 044668 131 NPQSLLSEAIFSACY-S-VVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPIS 207 (353)
Q Consensus 131 ~p~~~~~~~l~~~~f-~-~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~ 207 (353)
+|...+.+.+.+.+| + |||+++..|+.++|++++.++|++||+++|.|+|++|+++| ++++++.+++ ++|+ ||..
T Consensus 149 ~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~ 226 (425)
T 3d3y_A 149 DKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPR 226 (425)
T ss_dssp SHHHHHHHHHHHHHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCC
T ss_pred CHHHHHHHHHHHHhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCcc
Confidence 899999999999999 5 79999999999999999999999999999999999999999 9999999999 9999 9754
Q ss_pred CCCC------CCc----------------cc--------cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHH
Q 044668 208 ILTK------SPD----------------LC--------TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVL 257 (353)
Q Consensus 208 ~~~~------~p~----------------~i--------~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lr 257 (353)
..+. .|. .+ ..+++|++++.|++.||||| ++||||++||
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lR 295 (425)
T 3d3y_A 227 EEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGF-----------PHSKLFMNVR 295 (425)
T ss_dssp CCCCCCSCCCCCCCSSCEEEEEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTS-----------TTSHHHHHTT
T ss_pred ccccccccccccCCCcceeEEecCCccccEEEEEeecCCCCCCchHHHHHHHHHHhCCC-----------hhhHHHHHHH
Confidence 3210 110 01 23568999999999999997 8999999999
Q ss_pred hhCCceee--ecee-----ee-----------------------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Q 044668 258 NEIPRVQQ--GVYF-----CG-----------------------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDI 307 (353)
Q Consensus 258 e~~gl~Ys--~~y~-----fg-----------------------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l 307 (353)
|++|++|+ ..+. |+ +..+++|++||+++|+.+++++....+++..++..+
T Consensus 296 e~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~ 375 (425)
T 3d3y_A 296 EKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKE 375 (425)
T ss_dssp TTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HhcCeEEEEeccccccCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHH
Confidence 99999998 2121 22 456799999999999999999999999999999999
Q ss_pred HHHHHHcCCCcc
Q 044668 308 DRQVQTHGEMKP 319 (353)
Q Consensus 308 ~~~~~~~g~~~~ 319 (353)
+...+.+|.+.+
T Consensus 376 ~~~~~~~g~~~~ 387 (425)
T 3d3y_A 376 YLNELMPQTMLT 387 (425)
T ss_dssp HHHHHSTTSCCC
T ss_pred HHHHhhcCCCCC
Confidence 877664365443
No 14
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=7.7e-36 Score=284.04 Aligned_cols=252 Identities=22% Similarity=0.228 Sum_probs=208.0
Q ss_pred CceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC-------------cCccccCcceeEEEeecccCCHHHHHHHHH
Q 044668 57 LPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS-------------NIQASPSREQMGCSFAALETYVPEMVELLT 123 (353)
Q Consensus 57 v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~-------------~~~a~t~~d~t~~~~~~~~~~l~~~l~ll~ 123 (353)
+++.+++++|+++| ++.|++||+|||+|+||++++ ++|++|++|++.|++++++++++.+|++|+
T Consensus 13 v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~ 90 (352)
T 3cx5_B 13 STLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALA 90 (352)
T ss_dssp EEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHHHHH
Confidence 79999999999997 489999999999999999998 899999999999999999999999999999
Q ss_pred H-----------H------------HHHhcChHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCC
Q 044668 124 D-----------I------------SEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPW 180 (353)
Q Consensus 124 d-----------i------------~~~~~~p~~~~~~~l~~~~f~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n 180 (353)
+ + +...++|...+.+.+++.+|+|||+++.. .++|++++.++|++||+++|+|+|
T Consensus 91 d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l~~f~~~~y~~~n 168 (352)
T 3cx5_B 91 DVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDIKDFADKVYTKEN 168 (352)
T ss_dssp HHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHHHHHHHHHCCGGG
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHHHHHHHHhCCcCc
Confidence 9 2 22357899999999999999899999875 689999999999999999999999
Q ss_pred eEEEEEccCHHHHHHHH-HHhhCCCCCCCCCC----C----Cc--c--------c----cCCCCchHHHHHHHHhhcCCC
Q 044668 181 MVLAASGVEHDQLVSVE-EPLLSDLPISILTK----S----PD--L--------C----TLEDKDAMTLTVTQMLLEGGG 237 (353)
Q Consensus 181 ~~lvivGid~~el~~~v-~~~f~~l~~~~~~~----~----p~--~--------i----~~~~~d~~~~~vl~~iLGgg~ 237 (353)
++|+++|++++++.+++ +++|++||.+..+. . +. + + ..+++|++++.|++.+|||
T Consensus 169 ~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vl~~iLg~-- 246 (352)
T 3cx5_B 169 LEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRFIGDSVAAIGIPVNKASLAQYEVLANYLTS-- 246 (352)
T ss_dssp EEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEECSSSEEEEEEEEECTTTHHHHHHHHHHHHS--
T ss_pred EEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEecCCCceEEEecCCCChhHHHHHHHHHHhCc--
Confidence 99999999999999999 89999998543211 1 10 0 1 2456899999999999975
Q ss_pred CCCCCCCCCCcccHHHHHHHhhCCce-ee--ecee----ee-----------------ecCCCCCHHHHHHHHHHHHHHH
Q 044668 238 SFSAGGPGKGVYSRLHRRVLNEIPRV-QQ--GVYF----CG-----------------ITPGEVNQVQLDRAVQSTNSAI 293 (353)
Q Consensus 238 s~~~g~pg~g~~SrL~~~lre~~gl~-Ys--~~y~----fg-----------------l~~~~is~~EL~~aK~~l~~~~ 293 (353)
+|||+.|++ |+ ..|. |+ +..+++|++||++||+.+++++
T Consensus 247 -----------------~lre~~gl~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~i~~~l~~~~t~~el~~ak~~~~~~~ 309 (352)
T 3cx5_B 247 -----------------ALSELSGLISSAKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVADLKKGKDLSPAINYTKLKN 309 (352)
T ss_dssp -----------------TTSTTGGGCSEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHHHHHHSCEECGGGHHHHHHHH
T ss_pred -----------------chhcccCceEEEeecCcCcceeEEEEEEeCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 357788874 44 1121 22 2345799999999999999999
Q ss_pred HHhccCHHHHHHHHHHHHHHcCCCcc-----cccCCCceEEEEcCCCCCCCHHHH
Q 044668 294 LMNLESRIVVSEDIDRQVQTHGEMKP-----KLILSPLTMASYGDVINVPSYDAE 343 (353)
Q Consensus 294 ~~~~es~~~~a~~l~~~~~~~g~~~~-----~~l~~~~~~~~vG~~~~~p~~~~~ 343 (353)
..++++....... .++ + + ++++++++|+...+|+++++
T Consensus 310 ~~~~~~~~~~~~~----------~i~~vt~~~-~-~~~~~~~~G~~~~~~~~~~~ 352 (352)
T 3cx5_B 310 AVQNESVSSPIEL----------NFDAVKDFK-L-GKFNYVAVGDVSNLPYLDEL 352 (352)
T ss_dssp HHHCCSTTCCCCS----------CGGGCCEEC-C-CSCEEEEEESGGGSCCGGGC
T ss_pred HhhhhccCCccce----------eeeeeeHhh-c-CCceEEEEccccccCccccC
Confidence 9999984322111 122 4 4 89999999999999998863
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=5.5e-34 Score=306.25 Aligned_cols=259 Identities=12% Similarity=0.034 Sum_probs=210.6
Q ss_pred CCCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC---------------cCccccC
Q 044668 36 STSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS---------------NIQASPS 100 (353)
Q Consensus 36 ~~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~---------------~~~a~t~ 100 (353)
.||++|+..+.|+.+. +|.+|++.|+++..|+|||+|||+|+||++++ .+||+|+
T Consensus 44 ~nGl~v~~~~~~~~~~----------~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~ 113 (995)
T 2fge_A 44 KTGCEVMSVSNEDENK----------VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTY 113 (995)
T ss_dssp TTCCEEEEEECSCSSE----------EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEEC
T ss_pred CCCCEEEEEEcCCCcc----------EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeEC
Confidence 3577777777665543 57899999999999999999999999999987 5899999
Q ss_pred cceeEEEeecc-cCCHHHHHHHHHH------H-------HH--------------------------HhcChHHHHHHHH
Q 044668 101 REQMGCSFAAL-ETYVPEMVELLTD------I-------SE--------------------------ATRNPQSLLSEAI 140 (353)
Q Consensus 101 ~d~t~~~~~~~-~~~l~~~l~ll~d------i-------~~--------------------------~~~~p~~~~~~~l 140 (353)
.|+|+|++.+. .++++.+|+++.| + ++ ..++|..++.+.+
T Consensus 114 ~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~ 193 (995)
T 2fge_A 114 PDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIA 193 (995)
T ss_dssp SSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHH
Confidence 99999999875 5689999998888 2 11 2367999999999
Q ss_pred HHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCC--CCC----CCC-
Q 044668 141 FSACY-SVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLP--ISI----LTK- 211 (353)
Q Consensus 141 ~~~~f-~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~--~~~----~~~- 211 (353)
++.+| +|||+++.+|++++|.+++.++|++||++||+|+||+|+++| +|++++.++|+++|++|+ ... .+.
T Consensus 194 ~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~ 273 (995)
T 2fge_A 194 QQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIKFQ 273 (995)
T ss_dssp HHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCCCC
T ss_pred HHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccCCC
Confidence 99999 789999999999999999999999999999999999999999 999999999999999998 321 000
Q ss_pred ----CC------------c------cc--------cC-CCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhC
Q 044668 212 ----SP------------D------LC--------TL-EDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEI 260 (353)
Q Consensus 212 ----~p------------~------~i--------~~-~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~ 260 (353)
.| . ++ .. +++|++++.|++++|||+ ++|||+++||++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~-----------~~S~L~~~l~e~- 341 (995)
T 2fge_A 274 KLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGT-----------PASPLRKILLES- 341 (995)
T ss_dssp CCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSS-----------TTSHHHHHHHHT-
T ss_pred CCCCCCceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCC-----------CCCHHHHHHHhc-
Confidence 01 0 11 12 347899999999999987 899999999996
Q ss_pred Cceee-e-c-ee-------ee------------------------ecCCCCCHHHHHHHHHHHHHHHHHhc--cCHH--H
Q 044668 261 PRVQQ-G-V-YF-------CG------------------------ITPGEVNQVQLDRAVQSTNSAILMNL--ESRI--V 302 (353)
Q Consensus 261 gl~Ys-~-~-y~-------fg------------------------l~~~~is~~EL~~aK~~l~~~~~~~~--es~~--~ 302 (353)
||+|+ . . |. |+ +..+|++++||+++|++++.++.... +++. .
T Consensus 342 gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~ 421 (995)
T 2fge_A 342 GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLS 421 (995)
T ss_dssp TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHH
T ss_pred CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHH
Confidence 99987 2 2 22 21 46789999999999999999998654 2334 4
Q ss_pred HHHHHHHHHHHcCC
Q 044668 303 VSEDIDRQVQTHGE 316 (353)
Q Consensus 303 ~a~~l~~~~~~~g~ 316 (353)
++..++...++.|.
T Consensus 422 ~~~~~~~~~~~~~~ 435 (995)
T 2fge_A 422 LMLQSISKWIYDMD 435 (995)
T ss_dssp HHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhcCCC
Confidence 56777766654443
No 16
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.8e-33 Score=301.88 Aligned_cols=259 Identities=13% Similarity=0.031 Sum_probs=214.8
Q ss_pred CCCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC--------------cCccccCc
Q 044668 36 STSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS--------------NIQASPSR 101 (353)
Q Consensus 36 ~~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~--------------~~~a~t~~ 101 (353)
.||++|+..+.|..+. +++.++|++|+++||++..|+|||+|||+|+||++++ .+||+|+.
T Consensus 41 ~NGl~v~~~~~~~~~~-----~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~ 115 (990)
T 3cww_A 41 ANGIKVLLISDPTTDK-----SSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSG 115 (990)
T ss_dssp TTCCEEEEEECTTCSE-----EEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEEEEECS
T ss_pred CCCCEEEEEECCCCCc-----EEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCceeEEECC
Confidence 3577787777777777 8999999999999999999999999999999999986 78999999
Q ss_pred ceeEEEeecccCCHHHHHHHHHH----------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChH
Q 044668 102 EQMGCSFAALETYVPEMVELLTD----------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPEC 158 (353)
Q Consensus 102 d~t~~~~~~~~~~l~~~l~ll~d----------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e 158 (353)
|+|+|+++++.++++.+|+++++ ++...++|...+.+.+.+.+| +|||+++..|+++
T Consensus 116 d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~ 195 (990)
T 3cww_A 116 EHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKY 195 (990)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHH
T ss_pred CceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCCHH
Confidence 99999999999999999999999 223457888888888888888 6899999999999
Q ss_pred hhccc-------CHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCCCCCCCC----C-Cc-----------
Q 044668 159 AISRL-------NSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLPISILTK----S-PD----------- 214 (353)
Q Consensus 159 ~l~~i-------t~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~~~~~~~----~-p~----------- 214 (353)
+|.++ +.++|++||++||+|+||+|+++| +|+++++++++++|++||.+..+. . |.
T Consensus 196 ~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (990)
T 3cww_A 196 TLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLKQLYKI 275 (990)
T ss_dssp HHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSSEEEEE
T ss_pred HHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcCeEEEE
Confidence 99999 999999999999999999999999 999999999999999997643211 0 10
Q ss_pred -------cc---c-----CCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ec-e----e----
Q 044668 215 -------LC---T-----LEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV-Y----F---- 269 (353)
Q Consensus 215 -------~i---~-----~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~-y----~---- 269 (353)
++ | .++.+..++.+++++||++ |.+| |+.+||+ +|++|+ .+ + .
T Consensus 276 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~----------~~~s-l~~~Lr~-~g~~~~~~a~~~~~~~~~~~ 343 (990)
T 3cww_A 276 VPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHE----------GPGS-LLSELKS-KGWVNTLVGGQKAGARGFMF 343 (990)
T ss_dssp CCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCC----------STTC-HHHHHHH-TTSCSCEEEEEEEEETTEEE
T ss_pred EECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCC----------CCCc-HHHHHHH-CCCcceeeeccccCCCCccE
Confidence 01 1 1235678999999999985 2455 6679997 599987 11 1 1
Q ss_pred ee--------------------------ecCCCCCHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Q 044668 270 CG--------------------------ITPGEVNQVQLDRAVQSTNSAILMN-LESRIVVSEDIDRQV 311 (353)
Q Consensus 270 fg--------------------------l~~~~is~~EL~~aK~~l~~~~~~~-~es~~~~a~~l~~~~ 311 (353)
|. ++..|++++|++++|......+... .+++..++..++..+
T Consensus 344 f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 412 (990)
T 3cww_A 344 FIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGIL 412 (990)
T ss_dssp EEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHT
T ss_pred EEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHH
Confidence 21 4578999999999999888887764 567888888887554
No 17
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=1.6e-32 Score=296.21 Aligned_cols=264 Identities=12% Similarity=0.070 Sum_probs=210.4
Q ss_pred CCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC---------------cCccccCc
Q 044668 37 TSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS---------------NIQASPSR 101 (353)
Q Consensus 37 ~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~---------------~~~a~t~~ 101 (353)
||++++..+.+.... +. .+|.+|++.||+++.|+|||+|||+|+||++++ .+||+|+.
T Consensus 94 nGl~vl~i~~~~~~~-----~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~ 166 (1193)
T 3s5m_A 94 AKTQVISLGTNDPLD-----VE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFN 166 (1193)
T ss_dssp TCCEEEEEEECCTTC-----CC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECS
T ss_pred CCCEEEEEECCCCCe-----EE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcC
Confidence 455555555544321 22 457789999999999999999999999999987 67999999
Q ss_pred ceeEEEeeccc-CCHHHHHHHHHH------H--------HH---------------------------------------
Q 044668 102 EQMGCSFAALE-TYVPEMVELLTD------I--------SE--------------------------------------- 127 (353)
Q Consensus 102 d~t~~~~~~~~-~~l~~~l~ll~d------i--------~~--------------------------------------- 127 (353)
|+|+|+++++. ++++.+|++++| + ++
T Consensus 167 D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~ 246 (1193)
T 3s5m_A 167 DRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKG 246 (1193)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHH
T ss_pred CeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHH
Confidence 99999999887 899999999998 1 11
Q ss_pred HhcChHHHHHHHHHHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHHhhCCCC
Q 044668 128 ATRNPQSLLSEAIFSACY-SVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEPLLSDLP 205 (353)
Q Consensus 128 ~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~~f~~l~ 205 (353)
..++|..++.+.+.+.+| +|||+++..|++++|.++|.+||++||++||+|+|++|+++| +|++++.++++++|++|+
T Consensus 247 ~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~ 326 (1193)
T 3s5m_A 247 ALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLD 326 (1193)
T ss_dssp HTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHHhccCC
Confidence 236899999999999999 789999999999999999999999999999999999999999 999999999999999997
Q ss_pred CCCC--------CCC-----Cc---------------cc---cC---------C--------------------------
Q 044668 206 ISIL--------TKS-----PD---------------LC---TL---------E-------------------------- 219 (353)
Q Consensus 206 ~~~~--------~~~-----p~---------------~i---~~---------~-------------------------- 219 (353)
.++. +.. |+ ++ |. +
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~ 406 (1193)
T 3s5m_A 327 YSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLS 406 (1193)
T ss_dssp GGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTC
T ss_pred CCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 4321 000 10 11 21 2
Q ss_pred ---CCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-e--cee-------e----------------
Q 044668 220 ---DKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-G--VYF-------C---------------- 270 (353)
Q Consensus 220 ---~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~--~y~-------f---------------- 270 (353)
++|++++.|+++||||| .+||||++||| .||+|+ . .|. |
T Consensus 407 ~~~~~d~~al~vL~~iLggg-----------~sSrL~~~L~e-~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~ 474 (1193)
T 3s5m_A 407 LENPTDYFVLLIINNLLIHT-----------PESVLYKALTD-CGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKN 474 (1193)
T ss_dssp CCSHHHHHHHHHHHHHHHSS-----------TTSHHHHHHHH-HCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSC
T ss_pred ccCccHHHHHHHHHHHHCCC-----------CCCHHHHHHHh-cCCeeeecccccccccCCcEEEEEEecCChhhccccc
Confidence 37899999999999998 89999999998 599987 2 222 1
Q ss_pred -----e------------ecCCCCCHHHHHHHHHHHHHHHHHh-ccCHHH--HHHHHHHHHHHcCCCcc
Q 044668 271 -----G------------ITPGEVNQVQLDRAVQSTNSAILMN-LESRIV--VSEDIDRQVQTHGEMKP 319 (353)
Q Consensus 271 -----g------------l~~~~is~~EL~~aK~~l~~~~~~~-~es~~~--~a~~l~~~~~~~g~~~~ 319 (353)
. ++.+||+++||+++|+++..++... .+++.. ++..++..+++.|.+..
T Consensus 475 ~~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~ 543 (1193)
T 3s5m_A 475 FDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLL 543 (1193)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHH
Confidence 1 3456899999999999999998773 444443 34455556666666654
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.86 E-value=1.4e-21 Score=208.51 Aligned_cols=248 Identities=8% Similarity=-0.039 Sum_probs=196.9
Q ss_pred CceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC--------cCccccCcceeEEEeecccCCHHHHHHHHHH----
Q 044668 57 LPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS--------NIQASPSREQMGCSFAALETYVPEMVELLTD---- 124 (353)
Q Consensus 57 v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~--------~~~a~t~~d~t~~~~~~~~~~l~~~l~ll~d---- 124 (353)
..+.+.+.+|...++..+.|+++++.+|+..|+..+. +++.++ .+.+.+++++.+++++.+|+++.+
T Consensus 525 ~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~ 603 (939)
T 1q2l_A 525 ADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFS 603 (939)
T ss_dssp EEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhC
Confidence 6788899999998887888999999999999886554 666667 888999999999999999999998
Q ss_pred ------------------HHHH-hcChHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEE
Q 044668 125 ------------------ISEA-TRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAA 185 (353)
Q Consensus 125 ------------------i~~~-~~~p~~~~~~~l~~~~f~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvi 185 (353)
++.. .++|...+.+.+.+.+|++ + .+..++.+.|++++.++|++||+++|.+.++.++|
T Consensus 604 p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~-~-~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~v 681 (939)
T 1q2l_A 604 YTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP-Y-FSRDERRKILPSITLKEVLAYRDALKSGARPEFMV 681 (939)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS-C-CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC-C-CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEE
Confidence 2233 3468888999998887753 3 45557899999999999999999999999999999
Q ss_pred Ec-cCHHHHHHHHHHhhCCCCCCCCCC-C------Cc---------------cc----cCCCCchHHHHHHHHhhcCCCC
Q 044668 186 SG-VEHDQLVSVEEPLLSDLPISILTK-S------PD---------------LC----TLEDKDAMTLTVTQMLLEGGGS 238 (353)
Q Consensus 186 vG-id~~el~~~v~~~f~~l~~~~~~~-~------p~---------------~i----~~~~~d~~~~~vl~~iLGgg~s 238 (353)
+| ++++++.++++++|+.|+...... . +. .+ +....+.....++..+||++
T Consensus 682 vGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~-- 759 (939)
T 1q2l_A 682 IGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQI-- 759 (939)
T ss_dssp EESCCHHHHHHHHHHHHHHHTCCCSCCCCCEEECCCSCEEEEEEECCSSSCEEEEEEEECSSCCHHHHHHHHHHHHHH--
T ss_pred EcCCCHHHHHHHHHHHHHHHccCCccccccceEEeCCCceEEEecCCCCCCceeEEEEEecCCCCHHHHHHHHHHHHH--
Confidence 99 999999999999988776432211 0 10 01 22223456677788899987
Q ss_pred CCCCCCCCCcccHHHHHHHhhCCceee-ec-ee---------e-----e-------------------ecCCCCCHHHHH
Q 044668 239 FSAGGPGKGVYSRLHRRVLNEIPRVQQ-GV-YF---------C-----G-------------------ITPGEVNQVQLD 283 (353)
Q Consensus 239 ~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~-y~---------f-----g-------------------l~~~~is~~EL~ 283 (353)
+++|||++||++.|++|+ .+ +. | + +. .++|++||+
T Consensus 760 ---------~~s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~-~~~t~~el~ 829 (939)
T 1q2l_A 760 ---------VQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKL-RAMKPDEFA 829 (939)
T ss_dssp ---------HHHHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHH-HTCCHHHHH
T ss_pred ---------HHHHHHHHHHHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH-HhCCHHHHH
Confidence 999999999999999998 11 10 1 1 22 469999999
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc
Q 044668 284 RAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP 319 (353)
Q Consensus 284 ~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~ 319 (353)
++|+.++.++....++....+..+..+++..+...+
T Consensus 830 ~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d 865 (939)
T 1q2l_A 830 QIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFD 865 (939)
T ss_dssp HHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCC
Confidence 999999999999999998888888767665554433
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.84 E-value=7.3e-21 Score=204.31 Aligned_cols=278 Identities=9% Similarity=-0.019 Sum_probs=205.0
Q ss_pred CCCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcc-cCCCCC-------------cCcc-----
Q 044668 37 TSSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFR-STRDRS-------------NIQA----- 97 (353)
Q Consensus 37 ~~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~-gt~~~~-------------~~~a----- 97 (353)
||++|+..+.+..++ +.+.+++++|+. +++..|.++++.++++. ||++++ .+++
T Consensus 560 nG~~v~~~~~~~~~~-----v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~~~~~ 632 (995)
T 2fge_A 560 NGVKVLRHDLFTNDI-----IYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTS 632 (995)
T ss_dssp SSSEEEEEECCCSSE-----EEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEEEEEE
T ss_pred CCceEEEEecCCCCe-----EEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEeecccc
Confidence 466666666666666 889999999886 55778999999999886 999998 3344
Q ss_pred ccCc-----ceeEEEeecccCCHHHHHHHHHH-----------------------HHHH-hcChHHHHHHHHHHHhc-CC
Q 044668 98 SPSR-----EQMGCSFAALETYVPEMVELLTD-----------------------ISEA-TRNPQSLLSEAIFSACY-SV 147 (353)
Q Consensus 98 ~t~~-----d~t~~~~~~~~~~l~~~l~ll~d-----------------------i~~~-~~~p~~~~~~~l~~~~f-~~ 147 (353)
+++. +.+.++++++.++++.+|+++.+ ++.. .+++..++.+.+.+.++ .+
T Consensus 633 ~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~ 712 (995)
T 2fge_A 633 SVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAG 712 (995)
T ss_dssp EETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCHHH
T ss_pred ccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhCChhH
Confidence 4443 88999999999999999999998 1122 24566667777765533 24
Q ss_pred CCCCCCCC-----Ch--------HhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cCH-HHHHHHHHHhhCCC-CCCCCCC
Q 044668 148 VLANPLLA-----PE--------CAISRLNSTLIKEFFAENYTAPWMVLAASG-VEH-DQLVSVEEPLLSDL-PISILTK 211 (353)
Q Consensus 148 p~g~~~~G-----~~--------e~l~~it~edL~~f~~~~y~p~n~~lvivG-id~-~el~~~v~~~f~~l-~~~~~~~ 211 (353)
+|+....| .. +.++.+ .++|++||+++|++++++++++| +++ +++.++++++|+.| |....+.
T Consensus 713 ~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~ 791 (995)
T 2fge_A 713 WMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGL 791 (995)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSCSSCS
T ss_pred HHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccCCCCC
Confidence 55332211 11 557889 99999999999999999999999 995 99999999999999 7533211
Q ss_pred C----C---c-----------cc-------cCCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-
Q 044668 212 S----P---D-----------LC-------TLEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ- 265 (353)
Q Consensus 212 ~----p---~-----------~i-------~~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys- 265 (353)
. | . .+ ..+++|++++.|++.|||++ +|+++||+ +|++|+
T Consensus 792 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~al~vl~~iLg~~--------------~L~~~iRe-~g~aYg~ 856 (995)
T 2fge_A 792 VTWDGRLPLRNEAIVIPTQVNYVGKAGNIYSTGYELDGSAYVISKHISNT--------------WLWDRVRV-SGGAYGG 856 (995)
T ss_dssp CCCCCCCCCCCEEEECSCSSBEEEEEEEGGGGTCCCCTHHHHHHHHHHHT--------------HHHHHTTT-TTCCSEE
T ss_pred CcccccCCccceEEEecCceEEEEEecCCCCCCCcccHHHHHHHHHHCCC--------------ccHHHhhh-cCCCccc
Confidence 0 1 0 01 24579999999999999864 69999999 899998
Q ss_pred -ecee----ee-----------------------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCC
Q 044668 266 -GVYF----CG-----------------------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEM 317 (353)
Q Consensus 266 -~~y~----fg-----------------------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~ 317 (353)
..+. |+ +...++|++||++||..+++++ ...++...++....... ..|.+
T Consensus 857 ~s~~~~~G~~~~~~s~~dp~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~-~~~~~~~~~~~~~~~~~-~~g~~ 934 (995)
T 2fge_A 857 FCDFDSHSGVFSYLSYRDPNLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDV-DSYQLPDAKGYSSLLRH-LLGVT 934 (995)
T ss_dssp EEEEETTTTEEEEEEESBSCSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHH-HTTCC
T ss_pred ceEeCCCccEEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHH-HcCcC
Confidence 1111 11 4567899999999999999998 45677777776665444 36764
Q ss_pred cc----------------------cccC--CCceEEEEcCCCCCCC
Q 044668 318 KP----------------------KLIL--SPLTMASYGDVINVPS 339 (353)
Q Consensus 318 ~~----------------------~~l~--~~~~~~~vG~~~~~p~ 339 (353)
.+ +++. +++++++||+...++.
T Consensus 935 ~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~~ 980 (995)
T 2fge_A 935 DEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDA 980 (995)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCHHHHHh
Confidence 43 4553 4899999998765443
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.74 E-value=3e-18 Score=183.75 Aligned_cols=263 Identities=10% Similarity=0.035 Sum_probs=198.1
Q ss_pred CceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCCC--------cCccccCcceeEEEeecccCCHHHHHHHHHH----
Q 044668 57 LPDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDRS--------NIQASPSREQMGCSFAALETYVPEMVELLTD---- 124 (353)
Q Consensus 57 v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~~--------~~~a~t~~d~t~~~~~~~~~~l~~~l~ll~d---- 124 (353)
..+.+.+.++...++++..|+++|+..|+..+-.... +++++++.+.+.++++++.++++.+|+++.+
T Consensus 543 ~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~ 622 (990)
T 3cww_A 543 ANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMAT 622 (990)
T ss_dssp EEEEEEEECGGGTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHT
T ss_pred EEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHhCCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhc
Confidence 4556667777777888888999999999876532111 6777788889999999999999999999998
Q ss_pred ------------------HHHHhc-ChHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEE
Q 044668 125 ------------------ISEATR-NPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAA 185 (353)
Q Consensus 125 ------------------i~~~~~-~p~~~~~~~l~~~~f~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvi 185 (353)
++.... +|...+.+.+.+.+++++|. ..++.+.|++++.++|++|++++|.+.++.+++
T Consensus 623 p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~~~~~--~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v 700 (990)
T 3cww_A 623 FEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTEVAWT--KDELKEALADVTLPRLKAFIPQLLSRLHIEALL 700 (990)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBSSCCC--HHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCCCCCC--HHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEE
Confidence 112223 79999999998888865554 235789999999999999999999999999999
Q ss_pred Ec-cCHHHHHHH---HHHhhCCCCCCC-CC----------CCCc---------------c---c-----cCCCCchHHHH
Q 044668 186 SG-VEHDQLVSV---EEPLLSDLPISI-LT----------KSPD---------------L---C-----TLEDKDAMTLT 227 (353)
Q Consensus 186 vG-id~~el~~~---v~~~f~~l~~~~-~~----------~~p~---------------~---i-----~~~~~d~~~~~ 227 (353)
+| ++++++.++ ++++|+.+|... .+ ..|. . + ..++++.+++.
T Consensus 701 ~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 780 (990)
T 3cww_A 701 HGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLE 780 (990)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEECCHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEEeCCCCCHHHHHHHH
Confidence 99 999999888 667776554210 00 0010 0 1 24557889999
Q ss_pred HHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee--ecee-----ee---------------------------ec
Q 044668 228 VTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ--GVYF-----CG---------------------------IT 273 (353)
Q Consensus 228 vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys--~~y~-----fg---------------------------l~ 273 (353)
|++.+ ++++||.+|||+.|++|+ ..+. +| +.
T Consensus 781 ll~~i---------------l~~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~ 845 (990)
T 3cww_A 781 LFAQI---------------ISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSI 845 (990)
T ss_dssp HHHHH---------------HHHHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---------------HHHHHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999 588999999999999998 1111 11 33
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc----------------------cccC------CC
Q 044668 274 PGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP----------------------KLIL------SP 325 (353)
Q Consensus 274 ~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~----------------------~~l~------~~ 325 (353)
. ++|++||+++|..+++++....++....+......++..+...+ +++. .+
T Consensus 846 ~-~~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~ 924 (990)
T 3cww_A 846 E-DMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHK 924 (990)
T ss_dssp H-HSCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEE
T ss_pred H-hcCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCE
Confidence 4 79999999999999999999888888877766656654442322 4553 57
Q ss_pred ceEEEEcCCCCC
Q 044668 326 LTMASYGDVINV 337 (353)
Q Consensus 326 ~~~~~vG~~~~~ 337 (353)
++++++|+....
T Consensus 925 ~~v~v~g~~~~~ 936 (990)
T 3cww_A 925 VSVHVLAREMDS 936 (990)
T ss_dssp EEEEEECTTC--
T ss_pred EEEEEECCCCcc
Confidence 899999987644
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.71 E-value=4.1e-18 Score=184.22 Aligned_cols=272 Identities=11% Similarity=0.054 Sum_probs=181.8
Q ss_pred CCCcccccCCCCcccCCCCCceeEEEccccCCCCCCCCcHHHHHHHHhcc-cCCCCC-------------cCcccc----
Q 044668 38 SSPSLDFPLPGICLSHPSSLPDYFYVDCGSIYESPISFVKTDLLERMAFR-STRDRS-------------NIQASP---- 99 (353)
Q Consensus 38 ~~~~l~~~~p~~~~~~~~~v~~~~~v~~Gs~~E~~~~~G~ahlle~llf~-gt~~~~-------------~~~a~t---- 99 (353)
++|++..+.|...+ +.+.++|+.|.. +.+..+...|+..++.+ ||++++ .+++++
T Consensus 726 gv~v~~~~~~TNGI-----vY~~l~fdl~~l--~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~ 798 (1193)
T 3s5m_A 726 NVPILVYEMPTTGI-----VYLQFVFSLDHL--TVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYS 798 (1193)
T ss_dssp CEEEEEEECCCTTE-----EEEEEEEECTTC--CHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEEC
T ss_pred CeEEEEEECCCCCe-----EEEEEEEECCCC--CHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeec
Confidence 45555555555555 899999999864 45677888888888866 999998 333322
Q ss_pred --------C----cceeEEEeecccCCHHHHHHHHHH------------HH----H--------HhcChHHHHHHHHHHH
Q 044668 100 --------S----REQMGCSFAALETYVPEMVELLTD------------IS----E--------ATRNPQSLLSEAIFSA 143 (353)
Q Consensus 100 --------~----~d~t~~~~~~~~~~l~~~l~ll~d------------i~----~--------~~~~p~~~~~~~l~~~ 143 (353)
+ .+.+.+++.++.++++.+++|+.+ ++ + ..++...++...+.+.
T Consensus 799 ~~~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~ 878 (1193)
T 3s5m_A 799 KDDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAH 878 (1193)
T ss_dssp CCBTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTT
T ss_pred ccccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHh
Confidence 1 455789999999999999999999 11 1 1122233333333222
Q ss_pred hc-CCCCCCCCCCChHhhcccC-------------HHHHHHHHHhhcCCCCeEEEEEc-cC-HHHHHHHHHHhhCCCCC-
Q 044668 144 CY-SVVLANPLLAPECAISRLN-------------STLIKEFFAENYTAPWMVLAASG-VE-HDQLVSVEEPLLSDLPI- 206 (353)
Q Consensus 144 ~f-~~p~g~~~~G~~e~l~~it-------------~edL~~f~~~~y~p~n~~lvivG-id-~~el~~~v~~~f~~l~~- 206 (353)
+. .++|.....| .+.+..++ .++|+++|++.|+++|+++.++| .+ .+++.+.++++|++|+.
T Consensus 879 ~s~~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~ 957 (1193)
T 3s5m_A 879 LNSKHYAHNIIYG-YENYLKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSY 957 (1193)
T ss_dssp TCHHHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHH
T ss_pred cCcchhhhhhhCC-hHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhc
Confidence 22 1233222222 22333222 68999999999999999999999 86 46666655555543320
Q ss_pred ---C------------C--------------CC-C-CCc-----------c-------ccCCCCchHHHHHHHHhhcCCC
Q 044668 207 ---S------------I--------------LT-K-SPD-----------L-------CTLEDKDAMTLTVTQMLLEGGG 237 (353)
Q Consensus 207 ---~------------~--------------~~-~-~p~-----------~-------i~~~~~d~~~~~vl~~iLGgg~ 237 (353)
. . .. . .++ . +...++|++++.|++.|||++
T Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~~~~~d~~al~Vl~~iLg~~- 1036 (1193)
T 3s5m_A 958 FEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNS- 1036 (1193)
T ss_dssp HHHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSCTTCBCCTHHHHHHHHHHHT-
T ss_pred cccccccccccccccccccccccccccccccccccccccceeEecCCcceEEEEEecCCCCCCCchHHHHHHHHHHCcc-
Confidence 0 0 00 0 010 1 145679999999999999853
Q ss_pred CCCCCCCCCCcccHHHHHHHhhCCceee--ecee----ee----------------------ecC--CCCCHHHHHHHHH
Q 044668 238 SFSAGGPGKGVYSRLHRRVLNEIPRVQQ--GVYF----CG----------------------ITP--GEVNQVQLDRAVQ 287 (353)
Q Consensus 238 s~~~g~pg~g~~SrL~~~lre~~gl~Ys--~~y~----fg----------------------l~~--~~is~~EL~~aK~ 287 (353)
||+++||||.| +|+ ..|. |. +.. +++|++||++||.
T Consensus 1037 -------------~L~~eIREkgG-AYg~~s~~~~~G~f~~~syrdp~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~ 1102 (1193)
T 3s5m_A 1037 -------------YLWDTVRGLNG-AYGVFADIEYDGSVVFLSARDPNLEKTLATFRESAKGLRKMADTMTENDLLRYII 1102 (1193)
T ss_dssp -------------HHHHHHTTTTC-CSEEEEEECTTSEEEEEEESBSCSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHH
T ss_pred -------------HHHHHHHhcCC-eeEEEEeccCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 79999999876 999 2232 21 334 5899999999999
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc----------------------cccC----CCceEEEEcCC
Q 044668 288 STNSAILMNLESRIVVSEDIDRQVQTHGEMKP----------------------KLIL----SPLTMASYGDV 334 (353)
Q Consensus 288 ~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~----------------------~~l~----~~~~~~~vG~~ 334 (353)
.+++++- ...++..++..++. ...+|.+.+ +++. .++++++||+.
T Consensus 1103 ~~~~~~d-~p~~p~~~a~~~~~-~~~~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvvG~~ 1173 (1193)
T 3s5m_A 1103 NTIGTID-KPRRGIELSKLSFL-RLISNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVIITTK 1173 (1193)
T ss_dssp HHHHHHS-CCCCTHHHHHHHHH-HHHTTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEEECH
T ss_pred HHHhccc-ccCChHHHHHHHHH-HHHcCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceEEEEcCH
Confidence 9999964 56777778887775 455888775 5553 36999999974
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.42 E-value=8.5e-13 Score=114.73 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=86.1
Q ss_pred CCCCchHHHHHHHHhhcCCCCCCCCCCCCCcccHHHHHHHhhCCceee-ecee--------ee-----------------
Q 044668 218 LEDKDAMTLTVTQMLLEGGGSFSAGGPGKGVYSRLHRRVLNEIPRVQQ-GVYF--------CG----------------- 271 (353)
Q Consensus 218 ~~~~d~~~~~vl~~iLGgg~s~~~g~pg~g~~SrL~~~lre~~gl~Ys-~~y~--------fg----------------- 271 (353)
..++|++++.|++.+|||| ++||||++|||+ |++|+ .++. |+
T Consensus 36 ~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 103 (197)
T 3ih6_A 36 AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQT 103 (197)
T ss_dssp TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSSCEEEEEEECCTTSCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCCeEEEEEEEECCCCCHHHHHHH
Confidence 3568999999999999998 899999999996 99998 2211 22
Q ss_pred -------ecCCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc---------------------cccC
Q 044668 272 -------ITPGEVNQVQLDRAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP---------------------KLIL 323 (353)
Q Consensus 272 -------l~~~~is~~EL~~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~---------------------~~l~ 323 (353)
+..+++|++||++||+++++++..+++++..++..++.+.+ +|.+.. ++|.
T Consensus 104 i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~~~~~~~~~~i~~vT~~dv~~~a~~~l~ 182 (197)
T 3ih6_A 104 LTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQRDRVREAKLDDVQRAAVAYLV 182 (197)
T ss_dssp HHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHHHHHHHHTCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999998776 575433 5664
Q ss_pred -CCceEEEEcCC
Q 044668 324 -SPLTMASYGDV 334 (353)
Q Consensus 324 -~~~~~~~vG~~ 334 (353)
++.+++++|+.
T Consensus 183 ~~~~~~~~~~P~ 194 (197)
T 3ih6_A 183 RSNRTEGRYIPT 194 (197)
T ss_dssp GGGCEEEEECC-
T ss_pred ccCeEEEEEeCC
Confidence 67888888864
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=96.20 E-value=0.035 Score=46.90 Aligned_cols=126 Identities=6% Similarity=-0.119 Sum_probs=76.8
Q ss_pred ceeEEEccccCCCCCCCCcHHHHHHHHhcccCCCC--------C-------cCccccCcceeEEEeecccC-CHHHHHHH
Q 044668 58 PDYFYVDCGSIYESPISFVKTDLLERMAFRSTRDR--------S-------NIQASPSREQMGCSFAALET-YVPEMVEL 121 (353)
Q Consensus 58 ~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~~--------~-------~~~a~t~~d~t~~~~~~~~~-~l~~~l~l 121 (353)
.+.+.+.+.+..++ + .=...++..+|..|...+ . ......+...+.+++.+.++ +.+.+++.
T Consensus 26 ~v~~~~~~~~~~~~-d-~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 103 (197)
T 3ih6_A 26 LVAAMYHLPAAGSP-D-FVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQT 103 (197)
T ss_dssp EEEEEEECCCTTST-T-HHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEecCCCCCC-c-HHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCCHHHHHHH
Confidence 45566666655442 2 224466777766543211 0 11122233455667777766 68888877
Q ss_pred HHH-------------------------HHHHhcChHHHHHHHHHHHhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhc
Q 044668 122 LTD-------------------------ISEATRNPQSLLSEAIFSACYSVVLANPLLAPECAISRLNSTLIKEFFAENY 176 (353)
Q Consensus 122 l~d-------------------------i~~~~~~p~~~~~~~l~~~~f~~p~g~~~~G~~e~l~~it~edL~~f~~~~y 176 (353)
+.+ +....+++..++.......+++.+ ....-..+.|+++|.+|++++.++++
T Consensus 104 i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~--~~~~~~~~~i~~vT~~dv~~~a~~~l 181 (197)
T 3ih6_A 104 LTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDW--RLFFLQRDRVREAKLDDVQRAAVAYL 181 (197)
T ss_dssp HHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCT--THHHHHHHHHHTCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 765 112335677666665544444321 11122357889999999999999999
Q ss_pred CCCCeEEEEEc
Q 044668 177 TAPWMVLAASG 187 (353)
Q Consensus 177 ~p~n~~lvivG 187 (353)
.+++.+++++|
T Consensus 182 ~~~~~~~~~~~ 192 (197)
T 3ih6_A 182 VRSNRTEGRYI 192 (197)
T ss_dssp SGGGCEEEEEC
T ss_pred CccCeEEEEEe
Confidence 99999999988
No 24
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=95.11 E-value=0.12 Score=49.03 Aligned_cols=87 Identities=7% Similarity=-0.089 Sum_probs=57.4
Q ss_pred cceeEEEeecccCCHHHHHHHHHH-HH------------------------HHhcChHHHHHHHHHHHhcCCCCCCCCCC
Q 044668 101 REQMGCSFAALETYVPEMVELLTD-IS------------------------EATRNPQSLLSEAIFSACYSVVLANPLLA 155 (353)
Q Consensus 101 ~d~t~~~~~~~~~~l~~~l~ll~d-i~------------------------~~~~~p~~~~~~~l~~~~f~~p~g~~~~G 155 (353)
...+.+++.+.+++.+++++.+.+ ++ ...+++...+.......++.+.. .+..-
T Consensus 293 ~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~~~~ 371 (421)
T 3hdi_A 293 SGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKH-RSLDE 371 (421)
T ss_dssp CEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-CCHHH
T ss_pred CceEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-CCHHH
Confidence 344566777777788888887766 11 12244555555444444442211 11112
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cC
Q 044668 156 PECAISRLNSTLIKEFFAENYTAPWMVLAASG-VE 189 (353)
Q Consensus 156 ~~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id 189 (353)
..+.|+++|.+||+++.++++ |++++++++| .+
T Consensus 372 ~~~~i~~vt~~dv~~~a~~~~-~~~~~~~vvgp~~ 405 (421)
T 3hdi_A 372 MIEQINAVQKQDVSRLAKILL-SASPSISLINANG 405 (421)
T ss_dssp HHHHHHHCCHHHHHHHHHHHT-TSCCEEEEEESSC
T ss_pred HHHHHHcCCHHHHHHHHHHHc-ccCcEEEEECchh
Confidence 357789999999999999999 9999999999 64
No 25
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=94.66 E-value=0.17 Score=47.72 Aligned_cols=85 Identities=12% Similarity=0.075 Sum_probs=58.9
Q ss_pred ceeEEEeecccCCHHHHHHHHHH-------------------------HHHHhcChHHHHHHHHHHHhcCCCCCCCCCCC
Q 044668 102 EQMGCSFAALETYVPEMVELLTD-------------------------ISEATRNPQSLLSEAIFSACYSVVLANPLLAP 156 (353)
Q Consensus 102 d~t~~~~~~~~~~l~~~l~ll~d-------------------------i~~~~~~p~~~~~~~l~~~~f~~p~g~~~~G~ 156 (353)
..+.+++.+.+++.+++++.+.+ +....+++..++.......++..+.. ...-.
T Consensus 294 g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~~~ 372 (406)
T 3eoq_A 294 GTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYL-SLEEV 372 (406)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCC-CHHHH
T ss_pred eEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-CHHHH
Confidence 44566777777888888887766 11123567776666655555532211 11223
Q ss_pred hHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-c
Q 044668 157 ECAISRLNSTLIKEFFAENYTAPWMVLAASG-V 188 (353)
Q Consensus 157 ~e~l~~it~edL~~f~~~~y~p~n~~lvivG-i 188 (353)
.+.|+++|.+||+++.++++.++++ ++++| .
T Consensus 373 ~~~i~~vt~~dv~~~a~~~l~~~~~-~~vvGp~ 404 (406)
T 3eoq_A 373 KARVQRVTSREVNALLERGFLEKGL-YYLVLPH 404 (406)
T ss_dssp HHHHHHCCHHHHHHHHHTTTTTSCE-EEEEECC
T ss_pred HHHHHhCCHHHHHHHHHHhcCcccE-EEEECCC
Confidence 5778999999999999999999999 99999 5
No 26
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=94.16 E-value=0.14 Score=48.44 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=57.5
Q ss_pred ceeEEEeecccCCHHHHHHHHHH--------------HHH-----------HhcChHHHHHHHHHHHhcCCCCCCCCCCC
Q 044668 102 EQMGCSFAALETYVPEMVELLTD--------------ISE-----------ATRNPQSLLSEAIFSACYSVVLANPLLAP 156 (353)
Q Consensus 102 d~t~~~~~~~~~~l~~~l~ll~d--------------i~~-----------~~~~p~~~~~~~l~~~~f~~p~g~~~~G~ 156 (353)
..+.+++.+.+++.+++++.+.+ ++. ..+++..++........++.++.. ..-.
T Consensus 303 g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 381 (424)
T 3amj_B 303 GLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDY-LDHY 381 (424)
T ss_dssp EEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTT-TTSH
T ss_pred eeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhH-HHHH
Confidence 34566777777788887776655 111 124566555554433333334322 2223
Q ss_pred hHhhcccCHHHHHHHHHhhcCCCCeEEEEEc
Q 044668 157 ECAISRLNSTLIKEFFAENYTAPWMVLAASG 187 (353)
Q Consensus 157 ~e~l~~it~edL~~f~~~~y~p~n~~lvivG 187 (353)
.+.|+++|.+||+++.++++.|++++++++|
T Consensus 382 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~ 412 (424)
T 3amj_B 382 TERVQAVTVEQVREAFARHVKRENLITVVVG 412 (424)
T ss_dssp HHHHHTCCHHHHHHHHHHHCCGGGCEEEEEE
T ss_pred HHHHHcCCHHHHHHHHHHhcCccceEEEEEC
Confidence 6789999999999999999999999999999
No 27
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=93.85 E-value=0.13 Score=48.82 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=58.0
Q ss_pred ceeEEEeecccCCHHHHHHHHHH-HH------------------------HHhcChHHHHHHHHHHHhcCCCCCCCCCCC
Q 044668 102 EQMGCSFAALETYVPEMVELLTD-IS------------------------EATRNPQSLLSEAIFSACYSVVLANPLLAP 156 (353)
Q Consensus 102 d~t~~~~~~~~~~l~~~l~ll~d-i~------------------------~~~~~p~~~~~~~l~~~~f~~p~g~~~~G~ 156 (353)
..+.+++.+.+++.+++++.+.+ ++ ...+++...+........++.++.. ..-.
T Consensus 310 g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 388 (434)
T 3gwb_A 310 GPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSY-LEDF 388 (434)
T ss_dssp CEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTH-HHHH
T ss_pred eeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccH-HHHH
Confidence 45567777777778877776655 11 1123556555555443333322211 1122
Q ss_pred hHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cCH
Q 044668 157 ECAISRLNSTLIKEFFAENYTAPWMVLAASG-VEH 190 (353)
Q Consensus 157 ~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id~ 190 (353)
.+.|+++|.+||+++.++++.+++++++++| ...
T Consensus 389 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~vvg~~~~ 423 (434)
T 3gwb_A 389 MRQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTVA 423 (434)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGCEEEEEECCCC
T ss_pred HHHHHhCCHHHHHHHHHHhcChhhEEEEEEcCccc
Confidence 5778999999999999999999999999999 543
No 28
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=91.38 E-value=0.67 Score=44.09 Aligned_cols=85 Identities=14% Similarity=0.208 Sum_probs=57.2
Q ss_pred eeEEEeecccCCHHHHHHHHHH-------------H-----------HHHhcChHHHHHHHHHHHhc-CCCCCCCCCCCh
Q 044668 103 QMGCSFAALETYVPEMVELLTD-------------I-----------SEATRNPQSLLSEAIFSACY-SVVLANPLLAPE 157 (353)
Q Consensus 103 ~t~~~~~~~~~~l~~~l~ll~d-------------i-----------~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~ 157 (353)
.+.+++.+.+++.+++++.+.+ + ....++|..++.......++ +.+.. ..-..
T Consensus 319 ~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~ 396 (446)
T 1pp9_A 319 LLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIP--LAEWE 396 (446)
T ss_dssp EEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCC--HHHHH
T ss_pred EEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCC--HHHHH
Confidence 4566666777788888877665 1 11225666665554444323 33321 11224
Q ss_pred HhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cC
Q 044668 158 CAISRLNSTLIKEFFAENYTAPWMVLAASG-VE 189 (353)
Q Consensus 158 e~l~~it~edL~~f~~~~y~p~n~~lvivG-id 189 (353)
+.|.++|.+||+++.++++.+++.+++++| .+
T Consensus 397 ~~i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~ 429 (446)
T 1pp9_A 397 SRIAEVDARVVREVCSKYFYDQCPAVAGFGPIE 429 (446)
T ss_dssp HHHHTCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHcCCHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 678999999999999999999999999999 64
No 29
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=91.29 E-value=0.54 Score=44.61 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=57.1
Q ss_pred ceeEEEeecc--cCCHHHHHHHHHH-H-------------H--------H---HhcChHHHHHHHHHHHh-cCCCCCCCC
Q 044668 102 EQMGCSFAAL--ETYVPEMVELLTD-I-------------S--------E---ATRNPQSLLSEAIFSAC-YSVVLANPL 153 (353)
Q Consensus 102 d~t~~~~~~~--~~~l~~~l~ll~d-i-------------~--------~---~~~~p~~~~~~~l~~~~-f~~p~g~~~ 153 (353)
..+.+++.+. +++.+++++.+.+ + + . ..++|..++.......+ ++.+.. .
T Consensus 315 g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 392 (443)
T 1hr6_B 315 GLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLS--P 392 (443)
T ss_dssp EEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCC--H
T ss_pred eEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCC--H
Confidence 3456667777 7788888887766 1 1 1 11456555544443332 333322 1
Q ss_pred CCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cC
Q 044668 154 LAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VE 189 (353)
Q Consensus 154 ~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id 189 (353)
.-..+.|.++|.+||+++.++++.+++.+++++| ..
T Consensus 393 ~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 429 (443)
T 1hr6_B 393 EEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTS 429 (443)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhccCCcEEEEECCcc
Confidence 1234678999999999999999999999999999 53
No 30
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=91.18 E-value=0.66 Score=43.62 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=57.7
Q ss_pred ceeEEEeeccc-CCHHHHHHHHHH------------------------HHH--HhcChHHHHHHHHHHHh-cCCCCCCCC
Q 044668 102 EQMGCSFAALE-TYVPEMVELLTD------------------------ISE--ATRNPQSLLSEAIFSAC-YSVVLANPL 153 (353)
Q Consensus 102 d~t~~~~~~~~-~~l~~~l~ll~d------------------------i~~--~~~~p~~~~~~~l~~~~-f~~p~g~~~ 153 (353)
..+.+++.+.+ ++.+++++.+.+ +.. ..+++...+.......+ ++.+.. .
T Consensus 300 g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~ 377 (431)
T 3cx5_A 300 GLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLS--L 377 (431)
T ss_dssp EEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCC--H
T ss_pred ceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCC--H
Confidence 34556677777 788888877655 111 23455555555444433 343321 1
Q ss_pred CCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cC
Q 044668 154 LAPECAISRLNSTLIKEFFAENYTAPWMVLAASG-VE 189 (353)
Q Consensus 154 ~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id 189 (353)
.-..+.|+++|.+||+++.++++.+++.+++++| .+
T Consensus 378 ~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~ 414 (431)
T 3cx5_A 378 GEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIE 414 (431)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchh
Confidence 2235678999999999999999999999999999 64
No 31
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=90.67 E-value=0.63 Score=44.28 Aligned_cols=86 Identities=6% Similarity=-0.142 Sum_probs=54.5
Q ss_pred eeEEEeecccC-CHHHHHHHHHH--------------H-----------HHHhcChHHHHHHHHHHHhcCCCCCCCCCCC
Q 044668 103 QMGCSFAALET-YVPEMVELLTD--------------I-----------SEATRNPQSLLSEAIFSACYSVVLANPLLAP 156 (353)
Q Consensus 103 ~t~~~~~~~~~-~l~~~l~ll~d--------------i-----------~~~~~~p~~~~~~~l~~~~f~~p~g~~~~G~ 156 (353)
.+.+++.+.++ +.+++++.+.+ + ....+++..++........++.+.. ...-.
T Consensus 311 ~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ 389 (445)
T 3ami_A 311 LFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWR-DDDRF 389 (445)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTT-HHHHH
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChH-HHHHH
Confidence 44556666655 58888776655 1 1112455555544443333332221 11122
Q ss_pred hHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cC
Q 044668 157 ECAISRLNSTLIKEFFAENYTAPWMVLAASG-VE 189 (353)
Q Consensus 157 ~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id 189 (353)
.+.|+++|.+||+++.++++.+++++++++| ..
T Consensus 390 ~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~ 423 (445)
T 3ami_A 390 YQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLP 423 (445)
T ss_dssp HHHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEEC
T ss_pred HHHHHcCCHHHHHHHHHHHcCcCCeEEEEEccCc
Confidence 5678999999999999999999999999999 54
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=88.44 E-value=0.81 Score=43.17 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=56.0
Q ss_pred eeEEEeecccCCHHHHHHHHHH-------------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCC
Q 044668 103 QMGCSFAALETYVPEMVELLTD-------------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAP 156 (353)
Q Consensus 103 ~t~~~~~~~~~~l~~~l~ll~d-------------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~ 156 (353)
.+.+++.+.+++++++++.+.+ +....+++...+........+ +.+. ...-.
T Consensus 321 ~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 398 (439)
T 1pp9_B 321 LFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYT--PPSTV 398 (439)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCC--CHHHH
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCC--CHHHH
Confidence 3456666767788888777655 111235666666555544444 3222 12223
Q ss_pred hHhhcccCHHHHHHHHHhhcCCCCeEEEEEc-cC
Q 044668 157 ECAISRLNSTLIKEFFAENYTAPWMVLAASG-VE 189 (353)
Q Consensus 157 ~e~l~~it~edL~~f~~~~y~p~n~~lvivG-id 189 (353)
.+.|+++|.+||+++.++++. ++.+++++| .+
T Consensus 399 ~~~i~~vt~~dv~~~a~~~~~-~~~~~~v~g~~~ 431 (439)
T 1pp9_B 399 LQQIDAVADADVINAAKKFVS-GRKSMAASGNLG 431 (439)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH-SCEEEEEEECGG
T ss_pred HHHHhcCCHHHHHHHHHHHhc-CCceEEEECCcc
Confidence 567899999999999999998 899999999 53
No 33
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=87.57 E-value=1.7 Score=41.66 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=55.1
Q ss_pred ceeEEEeecccCCHHHHHHHHHH-HHH---------------------------HhcChHHHHHHHHHHHhc-CCCCCCC
Q 044668 102 EQMGCSFAALETYVPEMVELLTD-ISE---------------------------ATRNPQSLLSEAIFSACY-SVVLANP 152 (353)
Q Consensus 102 d~t~~~~~~~~~~l~~~l~ll~d-i~~---------------------------~~~~p~~~~~~~l~~~~f-~~p~g~~ 152 (353)
..+.+++.+.+++++++++.+.+ ++. ..+++...+.+.....++ +.+. +
T Consensus 314 g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~ 391 (475)
T 1hr6_A 314 GIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKI--P 391 (475)
T ss_dssp EEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCC--C
T ss_pred ceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC--C
Confidence 44566777777788887776554 111 123455544444433333 3332 1
Q ss_pred CCCChHhhcccCHHHHHHHHHhhcCC---------CCeEEEEEc-c
Q 044668 153 LLAPECAISRLNSTLIKEFFAENYTA---------PWMVLAASG-V 188 (353)
Q Consensus 153 ~~G~~e~l~~it~edL~~f~~~~y~p---------~n~~lvivG-i 188 (353)
..-..+.|+++|.+||+++.++++.+ ++.+++++| .
T Consensus 392 ~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~ 437 (475)
T 1hr6_A 392 VNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDR 437 (475)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCc
Confidence 11224678999999999999999998 689999999 6
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=83.01 E-value=4.6 Score=37.51 Aligned_cols=125 Identities=10% Similarity=0.019 Sum_probs=68.3
Q ss_pred ceeEEEccccCCCCCCCCcHHHHHHHHhcccCCC---------CC---cCcc--ccCcceeEEEeecccCCHHHHHHHHH
Q 044668 58 PDYFYVDCGSIYESPISFVKTDLLERMAFRSTRD---------RS---NIQA--SPSREQMGCSFAALETYVPEMVELLT 123 (353)
Q Consensus 58 ~~~~~v~~Gs~~E~~~~~G~ahlle~llf~gt~~---------~~---~~~a--~t~~d~t~~~~~~~~~~l~~~l~ll~ 123 (353)
.+.+.+.++..... .......++.+++..|... .. .+.+ ......+.+++.+.+++++++++.+.
T Consensus 256 ~v~~~~~~~~~~~~-~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 334 (425)
T 3d3y_A 256 KLNLAYNTDIYYGD-SYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLIS 334 (425)
T ss_dssp EEEEEEECCCCTTS-TTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECGGGHHHHHHHHH
T ss_pred EEEEEeecCCCCCC-chHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCHhhHHHHHHHHH
Confidence 34555665422222 2344556777777543211 01 1111 11233456666777778888887766
Q ss_pred H-------------------------HHHHhcChHHHHHHHHHHHhc-CCCCCCCCCCChHhhcccCHHHHHHHHHhhcC
Q 044668 124 D-------------------------ISEATRNPQSLLSEAIFSACY-SVVLANPLLAPECAISRLNSTLIKEFFAENYT 177 (353)
Q Consensus 124 d-------------------------i~~~~~~p~~~~~~~l~~~~f-~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~ 177 (353)
+ +....++|...+........+ +.+. ...-..+.|+++|.+||+++.+++ .
T Consensus 335 ~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~i~~vt~edv~~~a~~~-~ 411 (425)
T 3d3y_A 335 TELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTML--TAEEWIARINAVTIPEIQEVAKRL-E 411 (425)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCC--CHHHHHHHHHHCCHHHHHHHHHHC-E
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCCC--CHHHHHHHHHhCCHHHHHHHHHhc-c
Confidence 5 111235666666655444444 2222 122235678899999999999986 4
Q ss_pred CCCeEEEEEc
Q 044668 178 APWMVLAASG 187 (353)
Q Consensus 178 p~n~~lvivG 187 (353)
+++.. +++|
T Consensus 412 ~~~~~-~v~g 420 (425)
T 3d3y_A 412 LQAIF-FLEG 420 (425)
T ss_dssp EEEEE-EEEE
T ss_pred CceEE-EEeC
Confidence 66554 5555
No 35
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=82.31 E-value=3 Score=40.48 Aligned_cols=30 Identities=7% Similarity=0.039 Sum_probs=24.1
Q ss_pred HhhcccCHHHHHHHHHhhcCCCCeEEEEEc
Q 044668 158 CAISRLNSTLIKEFFAENYTAPWMVLAASG 187 (353)
Q Consensus 158 e~l~~it~edL~~f~~~~y~p~n~~lvivG 187 (353)
+.|.++|.+||+++.++++.+++.++++.+
T Consensus 417 ~~i~~vT~edV~~~a~~~l~~~~~~vvvg~ 446 (492)
T 3go9_A 417 AFLSGLTLAELNRELKQQLSQDTTLVLMQP 446 (492)
T ss_dssp HHHHHCCHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCeEEEEcC
Confidence 448899999999999999998755555544
No 36
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=48.40 E-value=50 Score=29.53 Aligned_cols=70 Identities=9% Similarity=-0.012 Sum_probs=49.6
Q ss_pred ecCCCCCHHHHH-HHHHHHHHHHHHhccCHHHHHHHHHHHHHHcCCCcc---------------------ccc-CCCceE
Q 044668 272 ITPGEVNQVQLD-RAVQSTNSAILMNLESRIVVSEDIDRQVQTHGEMKP---------------------KLI-LSPLTM 328 (353)
Q Consensus 272 l~~~~is~~EL~-~aK~~l~~~~~~~~es~~~~a~~l~~~~~~~g~~~~---------------------~~l-~~~~~~ 328 (353)
+..-.+++++++ +.|..++..+....+++..++.......++ +.+.. +++ ++++++
T Consensus 93 ~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~-~~p~~~~~~~~~l~~it~~~l~~f~~~~y~~~n~~l 171 (352)
T 3cx5_B 93 LYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITF-RKGLGNPLLYDGVERVSLQDIKDFADKVYTKENLEV 171 (352)
T ss_dssp HHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTTTSCSSCCSSSCCCHHHHHHHHHHHCCGGGEEE
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCccchhhhccCCHHHHHHHHHHhCCcCcEEE
Confidence 345568999998 999999999998788888888766656554 33211 344 468899
Q ss_pred EEEcCCCCCCCHHHHHHHH
Q 044668 329 ASYGDVINVPSYDAESAAS 347 (353)
Q Consensus 329 ~~vG~~~~~p~~~~~~~~~ 347 (353)
+++| . ..+++.+.+
T Consensus 172 ~v~G-~----~~~~~~~~i 185 (352)
T 3cx5_B 172 SGEN-V----VEADLKRFV 185 (352)
T ss_dssp EEES-S----CHHHHHHHH
T ss_pred EEeC-C----CHHHHHHHH
Confidence 9999 5 345555544
No 37
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=36.05 E-value=34 Score=24.35 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=40.2
Q ss_pred HhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc
Q 044668 143 ACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG 187 (353)
Q Consensus 143 ~~f~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG 187 (353)
..|++++-...++....|++.+.++...-..+.|....+++.++|
T Consensus 30 l~Y~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~ 74 (85)
T 3ov5_A 30 LSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 74 (85)
T ss_dssp EEECSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEET
T ss_pred eEecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 346777778888999999999999999999999999999999998
No 38
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=33.68 E-value=36 Score=25.63 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=40.7
Q ss_pred HhcCCCCCCCCCCChHhhcccCHHHHHHHHHhhcCCCCeEEEEEc
Q 044668 143 ACYSVVLANPLLAPECAISRLNSTLIKEFFAENYTAPWMVLAASG 187 (353)
Q Consensus 143 ~~f~~p~g~~~~G~~e~l~~it~edL~~f~~~~y~p~n~~lvivG 187 (353)
..|++++-...++..+.|+..+.++...-..+.|....+++.++|
T Consensus 60 l~Y~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~ 104 (120)
T 2l4w_A 60 LSYNLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSA 104 (120)
T ss_dssp EEECCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECS
T ss_pred eeecCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEEC
Confidence 457888888899999999999999999999999999999999987
No 39
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=26.54 E-value=40 Score=27.81 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=38.2
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCC-CeEEEEEc-cCHHHHHHHHHHhhCCC
Q 044668 156 PECAISRLNSTLIKEFFAENYTAP-WMVLAASG-VEHDQLVSVEEPLLSDL 204 (353)
Q Consensus 156 ~~e~l~~it~edL~~f~~~~y~p~-n~~lvivG-id~~el~~~v~~~f~~l 204 (353)
+.+.|.....++++.|++.|-.++ +=.+.+-| .+.+++.+.|++....|
T Consensus 119 di~Dl~~~~l~~i~~fF~~YK~le~gK~v~~~gw~~~~~A~~~I~~~~~~~ 169 (173)
T 1qez_A 119 DINDLPQATKNKIVHFFEHYKELEPGKYVKISGWGSATEAKNRIQLAIKRV 169 (173)
T ss_dssp SGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred ChHHCCHHHHHHHHHHHHHhccccCCCceEEccccCHHHHHHHHHHHHHHH
Confidence 456677777899999999887776 45567788 99999999998765444
No 40
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=25.45 E-value=76 Score=26.14 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=36.5
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCC-CeEEEEEc-cCHHHHHHHHHHhh
Q 044668 156 PECAISRLNSTLIKEFFAENYTAP-WMVLAASG-VEHDQLVSVEEPLL 201 (353)
Q Consensus 156 ~~e~l~~it~edL~~f~~~~y~p~-n~~lvivG-id~~el~~~v~~~f 201 (353)
+.+.|.....++++.|++.|-.++ +=.+.+-| .+.+++.+.|++..
T Consensus 123 di~Dl~~~~l~~i~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~ 170 (173)
T 3d53_A 123 ELDDLCEMLKKRIVHFFEHYKDLEKGKWVKVTGWGDKVKAETLIKEGI 170 (173)
T ss_dssp SGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHH
T ss_pred ChhHCCHHHHHHHHHHHHHHcCccCCCcEEEccCcCHHHHHHHHHHHH
Confidence 456677778899999999888776 45567788 99999999988753
No 41
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=24.66 E-value=63 Score=26.68 Aligned_cols=47 Identities=9% Similarity=0.055 Sum_probs=37.1
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCC---CeEEEEEc-cCHHHHHHHHHHhhC
Q 044668 156 PECAISRLNSTLIKEFFAENYTAP---WMVLAASG-VEHDQLVSVEEPLLS 202 (353)
Q Consensus 156 ~~e~l~~it~edL~~f~~~~y~p~---n~~lvivG-id~~el~~~v~~~f~ 202 (353)
+.+.|.....++++.|++.|-.++ +-.+.+-| .+.+++.+.|++...
T Consensus 120 di~Dl~~~~l~~i~~fF~~YK~le~k~gK~v~~~gw~~~~~A~~~I~~~~~ 170 (174)
T 2prd_A 120 DIGDVPEGVKQEIQHFFETYKALEAKKGKWVKVTGWRDRKAALEEVRACIA 170 (174)
T ss_dssp SGGGSCHHHHHHHHHHHHHTTGGGGGGTCCEEEEEEECHHHHHHHHHHHHH
T ss_pred ChHHCCHHHHHHHHHHHHHhcCccccCCCceEECcccCHHHHHHHHHHHHH
Confidence 456677777899999999887776 66677789 999999999887543
No 42
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=24.38 E-value=79 Score=26.01 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=37.7
Q ss_pred ChHhhcccCHHHHHHHHHhhcCCC-CeEEEEEc-cCHHHHHHHHHHhhCCC
Q 044668 156 PECAISRLNSTLIKEFFAENYTAP-WMVLAASG-VEHDQLVSVEEPLLSDL 204 (353)
Q Consensus 156 ~~e~l~~it~edL~~f~~~~y~p~-n~~lvivG-id~~el~~~v~~~f~~l 204 (353)
+.++|.....++++.|++.|-.++ +-.+.+-| .+.+++.+.|++....|
T Consensus 117 di~Dlp~~~l~~I~~fF~~YK~le~gK~v~v~gw~~~~~A~~~I~~~~~~~ 167 (172)
T 1sxv_A 117 DIGDVPAFELDAIKHFFVHYKDLEPGKFVKAADWVDRAEAEAEVQRSVERF 167 (172)
T ss_dssp SGGGSCHHHHHHHHHHHHHTTTTSTTCCEEEEEEECHHHHHHHHHHHHHHH
T ss_pred ChHHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 456667778899999999887776 44466778 89999999988765444
No 43
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=23.72 E-value=67 Score=28.95 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=30.3
Q ss_pred hcccCHHHHHHHHHhhcCCCCeEEEEEc-cCHHHHHHHHHH
Q 044668 160 ISRLNSTLIKEFFAENYTAPWMVLAASG-VEHDQLVSVEEP 199 (353)
Q Consensus 160 l~~it~edL~~f~~~~y~p~n~~lvivG-id~~el~~~v~~ 199 (353)
+++++.+++++..+.. ..++.|.++| |+++.+.++++.
T Consensus 235 LDn~~~~~l~~av~~i--~~~v~ieaSGGI~~~~i~~~a~t 273 (298)
T 3gnn_A 235 LDNFTLDMMRDAVRVT--EGRAVLEVSGGVNFDTVRAIAET 273 (298)
T ss_dssp EESCCHHHHHHHHHHH--TTSEEEEEESSCSTTTHHHHHHT
T ss_pred ECCCCHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHHc
Confidence 4578888888887765 4678899999 999998888764
No 44
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=22.31 E-value=50 Score=27.86 Aligned_cols=50 Identities=8% Similarity=-0.002 Sum_probs=37.8
Q ss_pred CChHhhcccCHHHHHHHHHhhcCCC-CeEEEEEc-cCHHHHHHHHHHhhCCC
Q 044668 155 APECAISRLNSTLIKEFFAENYTAP-WMVLAASG-VEHDQLVSVEEPLLSDL 204 (353)
Q Consensus 155 G~~e~l~~it~edL~~f~~~~y~p~-n~~lvivG-id~~el~~~v~~~f~~l 204 (353)
-+.+.|.....++++.|++.|=.++ +-.+.+.| .+.+++.+.|++....|
T Consensus 143 ~di~Dlp~~~l~~I~~fF~~YK~le~~K~v~v~~~~~~~~A~~~I~~~~~~~ 194 (197)
T 3fq3_A 143 HDYTDMPEITLKQIAHFFEHYKDLEPGKWVKIGDWGDEDYARKFIVEAIERA 194 (197)
T ss_dssp CSGGGSCHHHHHHHHHHHHHTTTTSTTCCEEECCCBCHHHHHHHHHHHHHHH
T ss_pred CchHHCCHHHHHHHHHHHHHhcCcCCCCeEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3456666677899999999876765 55566777 89999999998765544
No 45
>3fhk_A UPF0403 protein YPHP; disulfide isomerase, thioredoxin superfamily, CXC motif, structural genomics, surface entropy reduction, Ser, PSI-2; 2.30A {Bacillus subtilis}
Probab=20.39 E-value=80 Score=25.05 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=25.8
Q ss_pred cCCCCeEEEEEccCHHHHHHHHHHhhCCCCCCC
Q 044668 176 YTAPWMVLAASGVEHDQLVSVEEPLLSDLPISI 208 (353)
Q Consensus 176 y~p~n~~lvivGid~~el~~~v~~~f~~l~~~~ 208 (353)
-.|++++=|+.|.|.+.. +..+.||...|+.+
T Consensus 76 kkPD~lvTVFAGqDkEAt-~~aR~yf~~~pPSS 107 (147)
T 3fhk_A 76 KTPDNTVTVFAGQDKEAT-AKMREYFTGAAPSS 107 (147)
T ss_dssp SCCSEEEEEETTTSHHHH-HHHHTTSTTCCCCS
T ss_pred CCCCceEEeccCCCHHHH-HHHHHhcCCCCCCC
Confidence 479999999999997665 56788998887654
Done!