BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044675
         (168 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum GN=PI206
           PE=2 SV=2
          Length = 184

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 34/145 (23%)

Query: 52  HWHDI----QSGQNPTSISVVRPPTNTST-----NGFGIINMIDNPLTAGPEMSTKMVGR 102
           ++HDI    ++  N TS  V  P   + T     + FG I + D+P+T    +S+K VGR
Sbjct: 37  YFHDILYNGKNAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLSSKQVGR 96

Query: 103 AQGFYALASQEE----------------------VGLNPVFSKVREMPVIGGSGLFRFAR 140
           AQGFY   ++                         G +P+ +K R++ V GG+G F   R
Sbjct: 97  AQGFYIYDTKNTYTSWLSFTFVLNSTHHQGTITFAGADPIVAKTRDISVTGGTGDFFMHR 156

Query: 141 GYVQARTHNFDPKTGDATVQYNVYV 165
           G     T  F+   G+A  +  VY+
Sbjct: 157 GIATITTDAFE---GEAYFRLGVYI 178


>sp|Q02773|RPM2_YEAST Ribonuclease P protein component, mitochondrial OS=Saccharomyces
           cerevisiae (strain ATCC 204508 / S288c) GN=RPM2 PE=1
           SV=1
          Length = 1202

 Score = 32.0 bits (71), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 7/54 (12%)

Query: 4   FLPIFATQIIFLLFLLSSF-----TKIQVYGYAKTMNKNLMGLKKEKLTHFQIH 52
           ++P F+ +  +L+F+ +SF     TK ++Y Y   M +NL  LKK+KL+ + +H
Sbjct: 472 WIPEFSYEF-YLVFMANSFQDWNLTK-KIYDYIFPMERNLSPLKKQKLSDYLLH 523


>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
           PE=2 SV=1
          Length = 660

 Score = 30.4 bits (67), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 26/123 (21%)

Query: 18  LLSSFTKIQVYGYAKTMNKNLM------GLKKEKLTHFQIHWHDIQSGQ---NPTSISVV 68
           L   F + ++  + K+   NL        +  EKL      + ++ S +   NP  +S  
Sbjct: 314 LRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS-- 371

Query: 69  RPPTNTSTNGFGIINMIDNP---LTAGPEMSTKMVGRAQGFYALASQEE---VGLNPVFS 122
                    GFG +    NP   L A  EM+ KM+GR   + ALA ++E     L  +FS
Sbjct: 372 --------RGFGFV-AYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFS 422

Query: 123 KVR 125
           ++R
Sbjct: 423 QIR 425


>sp|Q8C1F5|TTC16_MOUSE Tetratricopeptide repeat protein 16 OS=Mus musculus GN=Ttc16 PE=2
           SV=1
          Length = 767

 Score = 30.0 bits (66), Expect = 6.5,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 14/134 (10%)

Query: 32  KTMNKNLMGLKKEKLTHFQI----HWHDIQSGQNPTSISVVRPPTNTSTNGFGIINMIDN 87
           K   +  +G  +E++T +Q         +++ +  TS++       +S + F I+++   
Sbjct: 494 KLWKQERLGTPEEEVTLYQAPQLAEEKKVKTARRRTSLTDSYADQTSSGSVFSIVSIS-- 551

Query: 88  PLTAGPEMSTKMVGRAQGFYALASQEEVGLNPVFSKVREMPVIGGSGLFRFARGYVQART 147
             T+GPEMST    ++    A+   E   L P  S  R+      S    ++   VQA T
Sbjct: 552 --TSGPEMSTSQEYKSSSHTAIEFSESTLLKPQLSVPRK------SQELTWSPKVVQAVT 603

Query: 148 HNFDPKTGDATVQY 161
            N      + T  Y
Sbjct: 604 ENLIQNATEVTPAY 617


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.137    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,432,883
Number of Sequences: 539616
Number of extensions: 2566521
Number of successful extensions: 4932
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4929
Number of HSP's gapped (non-prelim): 9
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)