Query 044675
Match_columns 168
No_of_seqs 131 out of 531
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 05:37:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03018 Dirigent: Dirigent-li 100.0 6.5E-44 1.4E-48 278.6 15.3 121 45-167 1-144 (144)
2 PF06351 Allene_ox_cyc: Allene 96.4 0.03 6.5E-07 45.0 8.6 101 43-150 4-127 (176)
3 PLN02343 allene oxide cyclase 92.7 2.5 5.4E-05 35.4 10.9 103 42-150 53-178 (229)
4 PF07172 GRP: Glycine rich pro 33.6 36 0.00077 24.9 2.2 9 18-26 18-26 (95)
5 PF07127 Nodulin_late: Late no 32.7 44 0.00096 21.5 2.3 20 1-20 1-20 (54)
6 PF06347 SH3_4: Bacterial SH3 24.2 53 0.0012 20.6 1.5 17 88-104 6-22 (55)
7 PF08239 SH3_3: Bacterial SH3 22.6 73 0.0016 19.6 2.0 16 88-103 4-19 (55)
8 PF11528 DUF3224: Protein of u 19.2 4.3E+02 0.0094 20.3 7.6 38 124-166 93-132 (134)
9 PF07436 Curto_V3: Curtovirus 18.1 93 0.002 22.3 1.8 16 23-38 17-32 (87)
10 PF06692 MNSV_P7B: Melon necro 13.9 2.6E+02 0.0057 18.8 3.1 36 5-40 14-49 (61)
No 1
>PF03018 Dirigent: Dirigent-like protein; InterPro: IPR004265 This family contains a number of proteins which are induced during disease response in plants.
Probab=100.00 E-value=6.5e-44 Score=278.63 Aligned_cols=121 Identities=49% Similarity=0.872 Sum_probs=108.7
Q ss_pred CeeEEEEEecccCCCCCcceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEeecCCcccc-------
Q 044675 45 KLTHFQIHWHDIQSGQNPTSISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSTKMVGRAQGFYALASQEEVGL------- 117 (168)
Q Consensus 45 ~~t~l~fY~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRAQG~~~~as~~~~~~------- 117 (168)
|++||+|||||+++|||+|+++|+.++.+ ...+||+++|+|||||+||+++||+||||||+|+.+++++.++
T Consensus 1 ~~t~l~fY~H~~~~g~n~t~~~v~~~~~~-~~~~FG~~~V~D~~lt~gp~~~S~~VGraqG~~~~~s~~~~~~~~~~~~v 79 (144)
T PF03018_consen 1 KETHLHFYMHDIVSGPNPTAVVVAEPPGP-SSSGFGTVVVFDDPLTEGPDPDSKLVGRAQGFYVSASLDGSSWFMSFTLV 79 (144)
T ss_pred CceEEEEEeeecCCCCCCCEEEeccCCCC-CCCCCcEEEEEeeceEcCCCCCCccceEEEEEEEeecccCccEEEEEEEE
Confidence 68999999999999999999999998764 3339999999999999999999999999999999999876443
Q ss_pred ----------------ccccCcceeeeEeeccccccceEeEEEEEEeeeCCCCCCeEEEEEEEEEe
Q 044675 118 ----------------NPVFSKVREMPVIGGSGLFRFARGYVQARTHNFDPKTGDATVQYNVYVMH 167 (168)
Q Consensus 118 ----------------~~~~~~~rElaVVGGTG~Fr~ArG~a~~~t~~~~~~~~~~v~e~~v~v~h 167 (168)
+++.+++||||||||||+||||||||+++++ .+.+++++|+||||||+|
T Consensus 80 F~~g~~~GStl~v~G~~~~~~~~~e~~VVGGTG~Fr~ArG~~~~~~~-~~~~~~~~v~e~~v~~~h 144 (144)
T PF03018_consen 80 FEDGEYNGSTLSVMGRDPFFEPVRELAVVGGTGEFRMARGYAKLRTV-FDSSGGNAVLELNVHLFH 144 (144)
T ss_pred EEecccCCCeEEEeCCCcccCcccEEeEecCCCeEcceEEEEEEEEE-eecCCCCEEEEEEEEEEC
Confidence 3456789999999999999999999999999 334578999999999998
No 2
>PF06351 Allene_ox_cyc: Allene oxide cyclase; InterPro: IPR009410 This family consists of several plant specific allene oxide cyclase proteins (5.3.99.6 from EC). The allene oxide cyclase (AOC)-catalysed step in jasmonate (JA) biosynthesis is important in the wound response of tomato [].; GO: 0016853 isomerase activity, 0009507 chloroplast; PDB: 2GIN_A 2DIO_B 2BRJ_B 2Q4I_B 1Z8K_A 1ZVC_A.
Probab=96.37 E-value=0.03 Score=44.97 Aligned_cols=101 Identities=22% Similarity=0.369 Sum_probs=59.0
Q ss_pred CCCeeEEEEE-ecccCCCCCcceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEeecC----Cc---
Q 044675 43 KEKLTHFQIH-WHDIQSGQNPTSISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSTKMVGRAQGFYALASQ----EE--- 114 (168)
Q Consensus 43 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRAQG~~~~as~----~~--- 114 (168)
..|...|++| +.+.-.|. |.-.++-+ .+....|+.+-+.|+|++|.- -+.+|--+|+-+.-.. .+
T Consensus 4 p~kvqel~vyeiNErdR~S-Pa~L~ls~----k~~nslGDlvpFsNklY~g~l--~~rlGitaG~Cvliq~~p~k~Gdry 76 (176)
T PF06351_consen 4 PTKVQELSVYEINERDRGS-PAYLRLSQ----KSVNSLGDLVPFSNKLYDGDL--QKRLGITAGICVLIQHVPEKKGDRY 76 (176)
T ss_dssp ----EEEEEEEE--S-S---S--B--SS----SSSS-TT-EEEEEEEEEETTS--S-EEEEEEEEEEEEEEECCCTEEEE
T ss_pred ccceEEEEEEEEcccccCC-CcEEEccc----ccchhcccccccccccccchh--hhhhcccceEEEEEEeccccCCceE
Confidence 4556778888 55544432 22233311 234569999999999999976 4889999999775442 11
Q ss_pred ---ccc-----------cccc-CcceeeeEeeccccccceEeEEEEEEeee
Q 044675 115 ---VGL-----------NPVF-SKVREMPVIGGSGLFRFARGYVQARTHNF 150 (168)
Q Consensus 115 ---~~~-----------~~~~-~~~rElaVVGGTG~Fr~ArG~a~~~t~~~ 150 (168)
.++ .+.. -+..-++|.||||-|+.|+|-++++.+-+
T Consensus 77 EaiySfyfGdyGhISvqGpy~t~eDtyLAVTGGtGiF~g~~GqVkL~qivf 127 (176)
T PF06351_consen 77 EAIYSFYFGDYGHISVQGPYLTYEDTYLAVTGGTGIFEGVYGQVKLHQIVF 127 (176)
T ss_dssp EEEEEEE-GGGEEEEEEEEEETTS-EEEEEEEEEETTTT-EEEEEEEEEET
T ss_pred EEEEEEEecccceEEEecccccccceeEEEeccCceeecceEEEEEEEeec
Confidence 111 1111 23457999999999999999999998865
No 3
>PLN02343 allene oxide cyclase
Probab=92.66 E-value=2.5 Score=35.37 Aligned_cols=103 Identities=21% Similarity=0.382 Sum_probs=67.0
Q ss_pred cCCCeeEEEEE-ecccCCCCCcceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEeecC------Cc
Q 044675 42 KKEKLTHFQIH-WHDIQSGQNPTSISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSTKMVGRAQGFYALASQ------EE 114 (168)
Q Consensus 42 ~~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRAQG~~~~as~------~~ 114 (168)
+..|...|.+| +.|.-.|. |.-.+.-+. ......|+++-+.+.|++|.-. |.+|--.|+-+.-.. |-
T Consensus 53 ~p~kvQel~VYEiNErDR~S-Pa~L~ls~k---~~~~sLGDlVPFsNKlY~g~L~--kRlGiTaG~Cvliq~~pek~gDr 126 (229)
T PLN02343 53 RPTKVQELSVYEINERDRGS-PAFLKLSKK---SVENALGDLVPFTNKLYTGDLK--KRLGITAGLCVLIQHVPEKKGDR 126 (229)
T ss_pred CCceeEEEEEEEeccccCCC-cceEEcccC---cccccccceeccccccccchhh--hhhcccceeEEEEEeccccCCce
Confidence 34566777788 44443332 222332222 1225699999999999999543 789999998765443 11
Q ss_pred ----ccc-----------cccc-CcceeeeEeeccccccceEeEEEEEEeee
Q 044675 115 ----VGL-----------NPVF-SKVREMPVIGGSGLFRFARGYVQARTHNF 150 (168)
Q Consensus 115 ----~~~-----------~~~~-~~~rElaVVGGTG~Fr~ArG~a~~~t~~~ 150 (168)
+++ .+.. -+..-++|.||+|-|+.|+|-+++..+-+
T Consensus 127 yEa~ySfyfGDyGHisvqGpyltyeDt~LaiTGGsGiFega~GqvkL~qivf 178 (229)
T PLN02343 127 YEAIYSFYFGDYGHISVQGPYLTYEDTYLAITGGSGIFEGAYGQVKLHQIVF 178 (229)
T ss_pred eEEEEEEEecCcceeEEeccccccccceEEeecCcceeecceeEEEEeeeee
Confidence 122 1111 13457999999999999999999988765
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.59 E-value=36 Score=24.89 Aligned_cols=9 Identities=33% Similarity=0.283 Sum_probs=3.7
Q ss_pred HHhhhhccc
Q 044675 18 LLSSFTKIQ 26 (168)
Q Consensus 18 ~~~~~~~~~ 26 (168)
|+||.+++.
T Consensus 18 lisSevaa~ 26 (95)
T PF07172_consen 18 LISSEVAAR 26 (95)
T ss_pred HHHhhhhhH
Confidence 444444443
No 5
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=32.66 E-value=44 Score=21.53 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=12.6
Q ss_pred CCCccchhHHHHHHHHHHHh
Q 044675 1 MARFLPIFATQIIFLLFLLS 20 (168)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (168)
|+|.+-+.-..+||+++++.
T Consensus 1 Ma~ilKFvY~mIiflslflv 20 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLV 20 (54)
T ss_pred CccchhhHHHHHHHHHHHHh
Confidence 78866666566666666443
No 6
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=24.16 E-value=53 Score=20.64 Aligned_cols=17 Identities=29% Similarity=0.579 Sum_probs=14.4
Q ss_pred ccccCCCCCCcceEeEE
Q 044675 88 PLTAGPEMSTKMVGRAQ 104 (168)
Q Consensus 88 ~lt~Gp~~~Sk~VGRAQ 104 (168)
+|+.+|+.+|+++.+++
T Consensus 6 ~lr~~P~~~~~vv~~l~ 22 (55)
T PF06347_consen 6 NLRSGPSSNSPVVARLE 22 (55)
T ss_pred EEEcCCCCCCCEEEEEC
Confidence 67899999999998763
No 7
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=22.58 E-value=73 Score=19.61 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=13.4
Q ss_pred ccccCCCCCCcceEeE
Q 044675 88 PLTAGPEMSTKMVGRA 103 (168)
Q Consensus 88 ~lt~Gp~~~Sk~VGRA 103 (168)
.|+.+|+.+|+.++.+
T Consensus 4 nvR~~p~~~s~~i~~l 19 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQL 19 (55)
T ss_dssp EEESSSSTTSTEEEEE
T ss_pred EEEeCCCCCChhhEEE
Confidence 3688999999999975
No 8
>PF11528 DUF3224: Protein of unknown function (DUF3224); InterPro: IPR021607 This bacterial family of proteins has no known function. ; PDB: 2OOJ_B 2Q03_B.
Probab=19.23 E-value=4.3e+02 Score=20.31 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=25.8
Q ss_pred ceeeeEe--eccccccceEeEEEEEEeeeCCCCCCeEEEEEEEEE
Q 044675 124 VREMPVI--GGSGLFRFARGYVQARTHNFDPKTGDATVQYNVYVM 166 (168)
Q Consensus 124 ~rElaVV--GGTG~Fr~ArG~a~~~t~~~~~~~~~~v~e~~v~v~ 166 (168)
..+|-|| -|||++...+|-..++... . .-.++|+..+-
T Consensus 93 ~~~~~VVPgSGTGeL~Gl~Gsg~~~~~~-g----~h~y~f~y~l~ 132 (134)
T PF11528_consen 93 SSSFTVVPGSGTGELAGLSGSGTITIDE-G----QHAYDFEYTLP 132 (134)
T ss_dssp EEEEEE-TT--EETTTTEEEEEEEEEET-T----CEEEEEEEEEE
T ss_pred eEEEEEeCCCCchhhcCCEEEEEEEECC-C----CceeeEEEECC
Confidence 3579999 9999999999999877655 2 23667766654
No 9
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=18.07 E-value=93 Score=22.32 Aligned_cols=16 Identities=6% Similarity=-0.099 Sum_probs=9.8
Q ss_pred hcccccceeeeccccc
Q 044675 23 TKIQVYGYAKTMNKNL 38 (168)
Q Consensus 23 ~~~~~~~~~~~~~~~~ 38 (168)
+...+.+||++.-..+
T Consensus 17 llQsgtNfYGTfqSgs 32 (87)
T PF07436_consen 17 LLQSGTNFYGTFQSGS 32 (87)
T ss_pred HHhcCCceeeeeccch
Confidence 3445578888775543
No 10
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=13.93 E-value=2.6e+02 Score=18.84 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHhhhhcccccceeeeccccccC
Q 044675 5 LPIFATQIIFLLFLLSSFTKIQVYGYAKTMNKNLMG 40 (168)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (168)
+...+.++|.+.+++.++.+.+...|+-..+..+.+
T Consensus 14 ~~~lLiliis~~f~lI~~l~qq~~~y~HH~d~Ss~K 49 (61)
T PF06692_consen 14 SGPLLILIISFVFFLITSLGQQGNTYVHHFDNSSVK 49 (61)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeeEEeecCccce
Done!