Query 044675
Match_columns 168
No_of_seqs 131 out of 531
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 09:29:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2brj_A Arabidopsis thaliana ge 97.8 0.00029 1E-08 56.1 11.7 112 43-166 13-147 (188)
2 4h6b_A Allene oxide cyclase; B 97.4 0.001 3.6E-08 53.1 9.3 105 43-150 14-144 (195)
3 2krs_A Probable enterotoxin; a 16.5 61 0.0021 20.8 1.6 49 88-150 12-61 (74)
4 2kq8_A Cell WALL hydrolase; GF 13.0 57 0.0019 20.7 0.7 16 88-103 13-28 (70)
5 2kt8_A Probable surface protei 11.5 89 0.003 20.2 1.3 49 88-150 14-63 (76)
6 2q03_A Uncharacterized protein 9.9 4E+02 0.014 19.5 4.6 37 124-164 98-136 (138)
7 3ozb_A Methylthioadenosine pho 8.9 1.2E+02 0.004 24.5 1.3 20 121-140 12-31 (259)
8 1fjk_A Cardiac phospholamban; 5.9 3.2E+02 0.011 16.8 2.0 10 9-18 36-45 (52)
9 1yr1_A Divib, FTSQ, cell-divis 5.8 2.5E+02 0.0087 19.6 1.7 23 34-56 68-90 (119)
10 1g2o_A Purine nucleoside phosp 5.4 2.3E+02 0.0077 22.9 1.4 18 124-141 27-44 (268)
No 1
>2brj_A Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone\:K13N2; cyclase, jasmonate synthesis, allene oxide cyclase, beta barrel; 1.5A {Arabidopsis thaliana} SCOP: b.159.1.1 PDB: 2dio_A* 2gin_A 1z8k_A* 2q4i_A 1zvc_A
Probab=97.82 E-value=0.00029 Score=56.07 Aligned_cols=112 Identities=19% Similarity=0.326 Sum_probs=74.1
Q ss_pred CCCeeEEEEE-ecccCCCCCcceEEEecCCCCCCCCCceeEEEEecccccCCCCCCcceEeEEEEEEeecC----Cc---
Q 044675 43 KEKLTHFQIH-WHDIQSGQNPTSISVVRPPTNTSTNGFGIINMIDNPLTAGPEMSTKMVGRAQGFYALASQ----EE--- 114 (168)
Q Consensus 43 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~~~~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRAQG~~~~as~----~~--- 114 (168)
..|...|.+| +.+.-.+. |.-.++-+ ++....|..+.++++|.+|.. -+.||.-+|+-+.... .+
T Consensus 13 ~~~vq~l~vye~NE~dr~s-Pa~L~l~~----k~~~slGDlvpFsNkLydg~l--~~rvG~taG~Cv~~~~~p~~~gdry 85 (188)
T 2brj_A 13 PSKVQELSVYEINELDRHS-PKILKNAF----SLMFGLGDLVPFTNKLYTGDL--KKRVGITAGLCVVIEHVPEKKGERF 85 (188)
T ss_dssp --CCEEEEEEEECCSCSCC-CCCBCCCS----SSSSCTTCEEEECCEEEETTS--SCEEEEEEEEEEEEEEEGGGTEEEE
T ss_pred ccceEEEEEEEecccccCC-CceEEccc----ccCcCcccEEeeccccccccc--ceeccccceEEEEEEecCCCCCcEE
Confidence 4556777788 54443322 22122211 123469999999999998865 4889999999776642 11
Q ss_pred ---ccc-----------ccc-cCcceeeeEeeccccccceEeEEEEEEeeeCCCCCCeEEEEEEEEE
Q 044675 115 ---VGL-----------NPV-FSKVREMPVIGGSGLFRFARGYVQARTHNFDPKTGDATVQYNVYVM 166 (168)
Q Consensus 115 ---~~~-----------~~~-~~~~rElaVVGGTG~Fr~ArG~a~~~t~~~~~~~~~~v~e~~v~v~ 166 (168)
+++ .+. .-+...+||.||||.|+.|+|.+++++..+. ..++|.+|+.
T Consensus 86 E~tyS~yfgd~GhISvQGpy~t~~Dt~LAITGGTGif~gA~G~Vkl~~i~~P-----~k~~yTf~L~ 147 (188)
T 2brj_A 86 EATYSFYFGDYGHLSVQGPYLTYEDSFLAITGGAGIFEGAYGQVKLQQLVYP-----TKLFYTFYLK 147 (188)
T ss_dssp EEEEEEECGGGEEEEEEEEEETTBCEEEEEEEEEETTTTCEEEEEEEEEETT-----TEEEEEEEEE
T ss_pred EEEEEEEeCCCceEEEeccccccccceeeEecCcceEcceEEEEEEEeeccC-----ceEEEEEEEe
Confidence 111 221 1234679999999999999999999999863 2578888874
No 2
>4h6b_A Allene oxide cyclase; B-barrel, oxylipins, fatty acid, metabolites, allene-oxide C activity, isomerase; HET: 10X 10Y; 1.35A {Physcomitrella patens} PDB: 4h6c_A 4h6a_A* 4h69_A*
Probab=97.38 E-value=0.001 Score=53.10 Aligned_cols=105 Identities=17% Similarity=0.286 Sum_probs=66.6
Q ss_pred CCCeeEEEEE-ecccCCCCCcceEEEecCC--CC-CCCCCceeEEEEecccccCCCCCCcceEeEEEEEEeec----CCc
Q 044675 43 KEKLTHFQIH-WHDIQSGQNPTSISVVRPP--TN-TSTNGFGIINMIDNPLTAGPEMSTKMVGRAQGFYALAS----QEE 114 (168)
Q Consensus 43 ~~~~t~l~fY-~Hd~~sg~n~t~~~v~~~~--~~-~~~~~FG~~~V~Dd~lt~Gp~~~Sk~VGRAQG~~~~as----~~~ 114 (168)
..|...|++| +.|.-.|. |.-.++-+-. .+ ..-...|+++.++++|++|.. -+-||-..|+-+.-. ..+
T Consensus 14 p~~vqel~VyEiNE~dr~s-Pa~l~l~~k~~~~~~~~~~slGDLvpFsnkLydg~l--~~RiGitaG~Cv~i~~~~~k~G 90 (195)
T 4h6b_A 14 PGHVQELFVYEINERDRGS-PVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSL--KTRLGITAGLCTLISHSDQKNG 90 (195)
T ss_dssp --CCEEEEEEEECCSCSCC-CCCBCTTCCBCTTTCCBCCCTTCEEEECCEEEETTS--CCEEEEEEEEEEEEEEETTTTE
T ss_pred CceeEEEEEEEecccccCC-cceeecccccCccccccccccccccccccccccccc--cccccccccEEEEEeecCCCCC
Confidence 4566778888 55544332 2112221111 00 112469999999999999987 478999999976553 111
Q ss_pred ------ccc-----------cccc-CcceeeeEeeccccccceEeEEEEEEeee
Q 044675 115 ------VGL-----------NPVF-SKVREMPVIGGSGLFRFARGYVQARTHNF 150 (168)
Q Consensus 115 ------~~~-----------~~~~-~~~rElaVVGGTG~Fr~ArG~a~~~t~~~ 150 (168)
.++ .+.. -+..-+||+||||.|+.|+|-+++..+-+
T Consensus 91 dryEci~Tf~fGD~GhIsvqGpy~t~eDs~lAITGGTGiF~Ga~GqVkl~qiv~ 144 (195)
T 4h6b_A 91 DRYEALYSFYFGDYGHISVQGPYITYEDSYLAITGGSGIFAGCYGQAKLHQIIF 144 (195)
T ss_dssp EEEEEEEEEECGGGCEEEEEEEEETTBCEEEEEEEESGGGTTCEEEEEEEEEET
T ss_pred ceEEEEEEEEecCCceEEEecceeccCceeEEEecCcceEcccEEEEEEeEeee
Confidence 111 1111 23356999999999999999999998876
No 3
>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}
Probab=16.48 E-value=61 Score=20.82 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=28.4
Q ss_pred ccccCCCCCCcceEeEE-EEEEeecCCccccccccCcceeeeEeeccccccceEeEEEEEEeee
Q 044675 88 PLTAGPEMSTKMVGRAQ-GFYALASQEEVGLNPVFSKVREMPVIGGSGLFRFARGYVQARTHNF 150 (168)
Q Consensus 88 ~lt~Gp~~~Sk~VGRAQ-G~~~~as~~~~~~~~~~~~~rElaVVGGTG~Fr~ArG~a~~~t~~~ 150 (168)
.|+.||+.++++|+.+. |..+. +.+...+|-=|-- ....||+..+-+..
T Consensus 12 nvRs~P~~~~~vi~~l~~G~~v~----------v~~~~~~W~kV~~----~g~~GwV~~~yl~~ 61 (74)
T 2krs_A 12 NMRSGPGSNYGVIGTLRNNDKVE----------IIKEVDGWYEIRF----NGKVGYASKSYITI 61 (74)
T ss_dssp EEESSSSTTTCEEEEEETTCEEE----------EEEEETTEEEEEE----TTEEEEECSSSEEE
T ss_pred EEEcCCCCCChHHEEECCCCEEE----------EEEEeCCEEEEEE----CCeEEEEEhHHcCC
Confidence 68899999999999752 22221 1222345653321 13578887665554
No 4
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=13.03 E-value=57 Score=20.70 Aligned_cols=16 Identities=13% Similarity=0.389 Sum_probs=13.8
Q ss_pred ccccCCCCCCcceEeE
Q 044675 88 PLTAGPEMSTKMVGRA 103 (168)
Q Consensus 88 ~lt~Gp~~~Sk~VGRA 103 (168)
.|+.||+.+++++|++
T Consensus 13 nvRsgP~~~~~ii~~l 28 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGAL 28 (70)
T ss_dssp CSSSSSSSCTTSCCCC
T ss_pred EEEcCCCCCCceEEEE
Confidence 5789999999999874
No 5
>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A
Probab=11.53 E-value=89 Score=20.25 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=28.3
Q ss_pred ccccCCCCCCcceEeEE-EEEEeecCCccccccccCcceeeeEeeccccccceEeEEEEEEeee
Q 044675 88 PLTAGPEMSTKMVGRAQ-GFYALASQEEVGLNPVFSKVREMPVIGGSGLFRFARGYVQARTHNF 150 (168)
Q Consensus 88 ~lt~Gp~~~Sk~VGRAQ-G~~~~as~~~~~~~~~~~~~rElaVVGGTG~Fr~ArG~a~~~t~~~ 150 (168)
.|+.||+.+++++|.+. |..+. +.++..+|-=|- +....||+..+-+..
T Consensus 14 nvR~~Ps~~~~ii~~l~~G~~v~----------vl~~~~~W~kV~----~~g~~GwV~~~yl~~ 63 (76)
T 2kt8_A 14 NVREGASTSSKVIGSLSGNTKVT----------IVGEEGAFYKIE----YKGSHGYVAKEYIKD 63 (76)
T ss_dssp EEESSSSTTSCEEEEECTTCEEE----------EEEEETTEEEEE----ETTEEEEEEGGGEEE
T ss_pred EEEcCCCCCChhhEEECCCCEEE----------EEEEeCCEEEEE----ECCEEEEEEhHHhCc
Confidence 57899999999998752 22221 122334566442 224578886554443
No 6
>2q03_A Uncharacterized protein; YP_563039.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.80A {Shewanella denitrificans OS217} SCOP: b.159.2.1
Probab=9.89 E-value=4e+02 Score=19.53 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=26.3
Q ss_pred ceeeeEee--ccccccceEeEEEEEEeeeCCCCCCeEEEEEEE
Q 044675 124 VREMPVIG--GSGLFRFARGYVQARTHNFDPKTGDATVQYNVY 164 (168)
Q Consensus 124 ~rElaVVG--GTG~Fr~ArG~a~~~t~~~~~~~~~~v~e~~v~ 164 (168)
...|-||- |||++...+|-..+.... ++..-++++..
T Consensus 98 ~~~~~VVPgSGTGeLaGl~G~g~~~~~~----~G~h~Y~~~y~ 136 (138)
T 2q03_A 98 SSEFELVERSATGDFVHLVGKGHFVSTE----NGQANYQITLQ 136 (138)
T ss_dssp EEEEEECTTCCEETTTTEEEEEEEEECS----TTEEEEEEEEE
T ss_pred eEEEEEeCCCccccccCcEEEEEEEEec----CCceEEEEEEe
Confidence 35788999 999999999999886432 24444555443
No 7
>3ozb_A Methylthioadenosine phosphorylase; 5'-methylthioinosine,phosphorylase, transferase; HET: HPA; 2.80A {Pseudomonas aeruginosa}
Probab=8.87 E-value=1.2e+02 Score=24.52 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=14.5
Q ss_pred cCcceeeeEeeccccccceE
Q 044675 121 FSKVREMPVIGGSGLFRFAR 140 (168)
Q Consensus 121 ~~~~rElaVVGGTG~Fr~Ar 140 (168)
+....+++|+||||-..++.
T Consensus 12 ~~~~p~igiI~GSGl~~l~~ 31 (259)
T 3ozb_A 12 FQGMSVYAIIGGTGLTQLEG 31 (259)
T ss_dssp ---CCCEEEEECTTSTTCTT
T ss_pred ccCCCCEEEEccCCcchhhh
Confidence 44456899999999888775
No 8
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=5.93 E-value=3.2e+02 Score=16.78 Aligned_cols=10 Identities=40% Similarity=0.796 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 044675 9 ATQIIFLLFL 18 (168)
Q Consensus 9 ~~~~~~~~~~ 18 (168)
+.++|||+++
T Consensus 36 clilicllli 45 (52)
T 1fjk_A 36 CLILIFLLLI 45 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455665554
No 9
>1yr1_A Divib, FTSQ, cell-division initiation protein; divisome, cell cycle; NMR {Geobacillus stearothermophilus} PDB: 2alj_A
Probab=5.76 E-value=2.5e+02 Score=19.57 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=15.0
Q ss_pred ccccccCccCCCeeEEEEEeccc
Q 044675 34 MNKNLMGLKKEKLTHFQIHWHDI 56 (168)
Q Consensus 34 ~~~~~~~~~~~~~t~l~fY~Hd~ 56 (168)
++-....+.+.+..++.|||+|-
T Consensus 68 IseI~~~p~~~~~~~i~L~M~DG 90 (119)
T 1yr1_A 68 MSEIHYKPTREYEDRVIVYMNDG 90 (119)
T ss_dssp CSEEEECCCSSCTTEEEEECTTS
T ss_pred ccEEEcCCCCCCCCeEEEEEcCC
Confidence 33333333456678999999984
No 10
>1g2o_A Purine nucleoside phosphorylase; trimer, transition-state complex, transferase; HET: IMH; 1.75A {Mycobacterium tuberculosis} SCOP: c.56.2.1 PDB: 1i80_A* 1n3i_A* 3iom_A*
Probab=5.43 E-value=2.3e+02 Score=22.89 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=14.8
Q ss_pred ceeeeEeeccccccceEe
Q 044675 124 VREMPVIGGSGLFRFARG 141 (168)
Q Consensus 124 ~rElaVVGGTG~Fr~ArG 141 (168)
.-+++|+||||-..++..
T Consensus 27 ~~~igiI~GSGl~~~~~~ 44 (268)
T 1g2o_A 27 EHDVAVVLGSGWLPAVAA 44 (268)
T ss_dssp CCSEEEEECTTCGGGSGG
T ss_pred CCCEEEEcCCchhhhHHh
Confidence 457999999999888754
Done!