BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044676
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 88/154 (57%), Gaps = 11/154 (7%)
Query: 14 MNGGNGAHSYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGP 73
M GG G +SY+ NSF Q+Q + K I+A ++ + +ADLGCS GP
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTV----TTRLAIADLGCSSGP 64
Query: 74 NTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLP----QDRQY 129
N + A+ ++ ++ + G +S P++Q+F ND NDFN +FR LP D
Sbjct: 65 NALFAVTELIKTVEELRKKMGRENS---PEYQIFLNDLPGNDFNAIFRSLPIENDVDGVC 121
Query: 130 FAAGVAGSFYCRLFPESSIHFVYSSTALHWLSRV 163
F GV GSFY RLFP +++HF++SS +L WLS+V
Sbjct: 122 FINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQV 155
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 103 bits (256), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 85/167 (50%), Gaps = 26/167 (15%)
Query: 14 MNGGNGAHSYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGP 73
M GG G SY+ NS Q A + + E + +V S S PFT DLGCS G
Sbjct: 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEETLE---NVHLNSSASPPPFTAVDLGCSSGA 65
Query: 74 NTVIAMQNFMEAIKLKYQDQG--PAHSQILPQFQVFFNDQVLNDFNTLFRYLP------- 124
NTV + ++ I ++ G P P+F FF+D NDFNTLF+ LP
Sbjct: 66 NTVHIIDFIVKHISKRFDAAGIDP------PEFTAFFSDLPSNDFNTLFQLLPPLVSNTC 119
Query: 125 --------QDRQYFAAGVAGSFYCRLFPESSIHFVYSSTALHWLSRV 163
+R YF AGV GSFY RLFP +I F +S+ +LHWLS+V
Sbjct: 120 MEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQV 166
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/165 (35%), Positives = 88/165 (53%), Gaps = 23/165 (13%)
Query: 14 MNGGNGAHSYSKNSFYQK---QFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCS 70
MNGG G SY+KNS Y + +++ I E++ A L + C F + DLGC+
Sbjct: 9 MNGGEGDTSYAKNSSYNLFLIRVKPVLEQCIQELLRANLPNINKC------FKVGDLGCA 62
Query: 71 VGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLP------ 124
GPNT +++ +++I Q++ + P Q+F ND NDFN++F+ LP
Sbjct: 63 SGPNTFSTVRDIVQSIDKVGQEKKNELER--PTIQIFLNDLFQNDFNSVFKLLPSFYRNL 120
Query: 125 ---QDRQY---FAAGVAGSFYCRLFPESSIHFVYSSTALHWLSRV 163
R+ + GSFY RLFPE S+HF++S LHWLS+V
Sbjct: 121 EKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQV 165
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 24/166 (14%)
Query: 14 MNGGNGAHSYSKNSFYQK----QFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGC 69
MNGG G SY+KNS Y + + +++ + E++ A L + C +ADLGC
Sbjct: 9 MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKC------IKVADLGC 62
Query: 70 SVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLP----- 124
+ GPNT++ +++ +++I Q++ + P Q+F ND NDFN++F+ LP
Sbjct: 63 ASGPNTLLTVRDIVQSIDKVGQEKKNELER--PTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 125 ----QDRQY---FAAGVAGSFYCRLFPESSIHFVYSSTALHWLSRV 163
R+ + GSFY RLFPE S+HF++S L WLS+V
Sbjct: 121 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQV 166
>pdb|3K2Q|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
pdb|3K2Q|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Marinobacter Aquaeolei,
Northeast Structural Genomics Consortium Target Mqr88
Length = 420
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 19/106 (17%)
Query: 33 FADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQD 92
F + K + A LD+KS+C S+ F L +G G A L Q
Sbjct: 156 FGSVAKYIATSTLEASLDIKSMCETSTKVFILEVMGRHAG--------WIAAAGGLAGQS 207
Query: 93 QG-PAHSQILPQFQVFFN--------DQVLNDFNTLFRYLPQDRQY 129
+G P H + P ++ FN DQ + D+ + QY
Sbjct: 208 EGEPPHVILFP--EIPFNREKFLERVDQCVRDYGYCVVVASEGAQY 251
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 115 DFNTL-FRYLPQDRQYFAAGVAGSFYCRLFPESS-IHFVYSSTALHWLSRVFK 165
D++TL F Y+ D +Y A G + E + IH STALH+ + F+
Sbjct: 25 DWSTLGFSYIRTDLRYLAHWKDGEWDAGTLTEDNQIHLAEGSTALHYGQQCFE 77
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 27.7 bits (60), Expect = 3.1, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 71 VGPNT--VIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQ 128
V PN V+ Q F++ + + D A Q++ F++ D+ + L R LP D+
Sbjct: 770 VDPNRMGVVTFQAFIDFMSRETADTDTA-DQVMASFKILAGDKNYITVDELRRELPPDQA 828
Query: 129 YFAAGVAGSFYCRLFPESSIHFVYSSTALH 158
+ + R ++ ++ STAL+
Sbjct: 829 EYCIARMAPYNGRDAVPGALDYMSFSTALY 858
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,742,213
Number of Sequences: 62578
Number of extensions: 173153
Number of successful extensions: 448
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 429
Number of HSP's gapped (non-prelim): 9
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)