Query 044676
Match_columns 166
No_of_seqs 109 out of 384
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 05:38:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 1.5E-57 3.2E-62 400.5 14.8 154 4-166 12-181 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 1.1E-48 2.3E-53 338.8 8.6 118 41-166 1-126 (334)
3 TIGR02072 BioC biotin biosynth 97.6 0.00023 4.9E-09 56.7 7.1 107 21-162 7-113 (240)
4 PRK01683 trans-aconitate 2-met 96.9 0.0026 5.7E-08 52.3 6.1 102 20-162 6-108 (258)
5 PRK10258 biotin biosynthesis p 96.8 0.0038 8.3E-08 51.2 6.8 100 22-162 19-118 (251)
6 PRK14103 trans-aconitate 2-met 96.4 0.013 2.7E-07 48.4 6.9 100 21-162 5-104 (255)
7 PRK06202 hypothetical protein; 96.4 0.025 5.3E-07 46.0 8.5 85 59-162 59-144 (232)
8 TIGR02752 MenG_heptapren 2-hep 95.9 0.014 3E-07 47.0 4.9 81 61-162 46-129 (231)
9 PF13847 Methyltransf_31: Meth 95.7 0.076 1.6E-06 40.2 8.0 81 60-162 3-88 (152)
10 TIGR03587 Pse_Me-ase pseudamin 95.5 0.066 1.4E-06 43.4 7.4 102 23-161 17-119 (204)
11 PF12847 Methyltransf_18: Meth 95.3 0.15 3.2E-06 36.0 7.9 45 62-111 3-61 (112)
12 PF13489 Methyltransf_23: Meth 95.3 0.017 3.6E-07 43.0 3.1 71 59-162 21-93 (161)
13 PF08241 Methyltransf_11: Meth 94.8 0.048 1E-06 36.7 4.0 73 65-160 1-73 (95)
14 PRK11207 tellurite resistance 94.5 0.13 2.8E-06 41.1 6.3 19 61-79 31-49 (197)
15 KOG2940 Predicted methyltransf 94.2 0.037 8E-07 47.3 2.7 27 137-165 129-155 (325)
16 PRK07580 Mg-protoporphyrin IX 94.2 0.45 9.8E-06 37.9 9.0 19 61-79 64-82 (230)
17 PRK00216 ubiE ubiquinone/menaq 93.9 0.11 2.3E-06 41.4 4.7 83 61-163 52-137 (239)
18 PRK12335 tellurite resistance 93.5 0.19 4.1E-06 42.5 5.8 18 63-80 123-140 (287)
19 PF13649 Methyltransf_25: Meth 93.2 0.24 5.3E-06 34.8 5.2 18 64-81 1-18 (101)
20 PRK06922 hypothetical protein; 93.1 0.2 4.3E-06 48.0 5.8 19 142-160 482-500 (677)
21 smart00138 MeTrc Methyltransfe 92.9 0.29 6.3E-06 41.2 6.1 19 143-161 199-217 (264)
22 PRK05785 hypothetical protein; 92.8 0.21 4.6E-06 40.9 5.0 75 61-163 52-126 (226)
23 PRK11188 rrmJ 23S rRNA methylt 92.6 0.26 5.5E-06 40.0 5.1 72 61-161 52-131 (209)
24 TIGR02021 BchM-ChlM magnesium 92.3 2.3 4.9E-05 34.0 10.3 20 60-79 55-74 (219)
25 PRK00121 trmB tRNA (guanine-N( 92.2 0.21 4.5E-06 40.1 4.1 46 29-79 14-59 (202)
26 TIGR00477 tehB tellurite resis 92.2 0.2 4.4E-06 39.9 4.0 19 61-79 31-49 (195)
27 TIGR01934 MenG_MenH_UbiE ubiqu 91.5 0.51 1.1E-05 37.0 5.6 83 60-162 39-121 (223)
28 PLN02244 tocopherol O-methyltr 91.5 1.9 4.1E-05 37.5 9.6 21 60-80 118-138 (340)
29 PRK15451 tRNA cmo(5)U34 methyl 91.5 1.1 2.4E-05 36.9 7.8 19 61-79 57-75 (247)
30 TIGR00740 methyltransferase, p 91.4 0.29 6.2E-06 39.9 4.2 81 61-161 54-136 (239)
31 PRK08317 hypothetical protein; 91.3 1.1 2.3E-05 35.3 7.2 82 60-162 19-102 (241)
32 PTZ00098 phosphoethanolamine N 91.0 1.1 2.4E-05 37.5 7.4 79 60-161 52-131 (263)
33 COG2226 UbiE Methylase involve 91.0 0.51 1.1E-05 39.7 5.3 86 60-164 51-136 (238)
34 PLN02490 MPBQ/MSBQ methyltrans 90.8 0.8 1.7E-05 40.4 6.6 79 61-161 114-192 (340)
35 TIGR02081 metW methionine bios 90.7 0.31 6.7E-06 38.5 3.6 20 143-162 71-90 (194)
36 PLN02233 ubiquinone biosynthes 90.4 1.5 3.4E-05 36.5 7.8 20 143-162 141-160 (261)
37 TIGR03438 probable methyltrans 90.0 1.2 2.5E-05 38.1 6.8 38 39-82 48-85 (301)
38 PLN02336 phosphoethanolamine N 89.7 0.79 1.7E-05 41.2 5.8 81 61-162 267-347 (475)
39 PLN02336 phosphoethanolamine N 89.6 0.71 1.5E-05 41.5 5.4 20 143-162 99-118 (475)
40 COG4106 Tam Trans-aconitate me 89.5 0.46 1E-05 40.2 3.8 23 140-162 85-107 (257)
41 PRK11036 putative S-adenosyl-L 89.2 0.77 1.7E-05 37.8 4.9 78 60-162 44-127 (255)
42 PRK11873 arsM arsenite S-adeno 89.1 0.82 1.8E-05 37.8 5.1 26 136-161 135-160 (272)
43 PF08242 Methyltransf_12: Meth 88.8 0.63 1.4E-05 32.3 3.6 77 65-161 1-80 (99)
44 smart00828 PKS_MT Methyltransf 88.7 1.2 2.6E-05 35.6 5.6 17 63-79 2-18 (224)
45 TIGR02716 C20_methyl_CrtF C-20 86.9 3.4 7.4E-05 34.9 7.6 76 60-158 149-226 (306)
46 TIGR00091 tRNA (guanine-N(7)-) 86.6 1.7 3.7E-05 34.4 5.3 19 62-80 18-36 (194)
47 PF01209 Ubie_methyltran: ubiE 86.0 0.46 9.9E-06 39.4 1.8 81 60-162 47-131 (233)
48 cd02440 AdoMet_MTases S-adenos 85.8 1.9 4.1E-05 28.1 4.5 17 63-79 1-17 (107)
49 PRK00312 pcm protein-L-isoaspa 85.5 6.7 0.00015 31.2 8.3 19 60-78 78-96 (212)
50 PF00891 Methyltransf_2: O-met 85.3 2.9 6.4E-05 33.9 6.2 70 60-158 100-169 (241)
51 PF03848 TehB: Tellurite resis 84.8 1.8 3.9E-05 35.3 4.7 46 61-113 31-88 (192)
52 PRK14121 tRNA (guanine-N(7)-)- 84.6 2.5 5.4E-05 38.1 5.9 19 62-80 124-142 (390)
53 PHA03412 putative methyltransf 84.3 0.57 1.2E-05 39.6 1.6 84 61-154 50-171 (241)
54 PRK11088 rrmA 23S rRNA methylt 83.3 4.4 9.5E-05 33.8 6.6 19 61-79 86-104 (272)
55 PRK15068 tRNA mo(5)U34 methylt 82.9 1.6 3.5E-05 37.8 3.9 76 62-161 124-203 (322)
56 PLN02396 hexaprenyldihydroxybe 81.4 3.7 8E-05 35.8 5.6 20 143-162 194-213 (322)
57 KOG3010 Methyltransferase [Gen 80.0 0.53 1.2E-05 40.2 -0.1 17 144-160 97-113 (261)
58 KOG1541 Predicted protein carb 75.1 2.4 5.1E-05 36.2 2.4 45 21-75 21-65 (270)
59 PRK07402 precorrin-6B methylas 75.0 16 0.00034 28.7 7.1 18 62-79 42-59 (196)
60 PRK08287 cobalt-precorrin-6Y C 74.8 4.6 9.9E-05 31.5 3.9 20 61-80 32-51 (187)
61 TIGR02469 CbiT precorrin-6Y C5 74.1 5.6 0.00012 27.9 3.9 19 62-80 21-39 (124)
62 PF05175 MTS: Methyltransferas 73.8 12 0.00027 28.8 6.1 19 62-80 33-51 (170)
63 PF05148 Methyltransf_8: Hypot 73.3 2.9 6.2E-05 35.0 2.4 63 58-158 70-133 (219)
64 PRK00107 gidB 16S rRNA methylt 71.4 10 0.00022 30.4 5.2 19 61-79 46-64 (187)
65 PRK00274 ksgA 16S ribosomal RN 71.2 6.3 0.00014 33.1 4.1 48 62-118 44-103 (272)
66 PF01728 FtsJ: FtsJ-like methy 70.6 4.5 9.8E-05 31.3 2.9 21 59-79 22-42 (181)
67 TIGR00080 pimt protein-L-isoas 70.0 6.9 0.00015 31.4 4.0 20 61-80 78-97 (215)
68 PRK09489 rsmC 16S ribosomal RN 69.4 5.8 0.00013 34.8 3.7 17 63-79 199-215 (342)
69 TIGR00478 tly hemolysin TlyA f 69.3 6.5 0.00014 32.7 3.7 22 60-81 75-96 (228)
70 TIGR03533 L3_gln_methyl protei 69.1 6.3 0.00014 33.4 3.7 21 61-81 122-142 (284)
71 PRK04266 fibrillarin; Provisio 68.9 3.2 6.8E-05 34.3 1.8 20 62-81 74-93 (226)
72 COG2813 RsmC 16S RNA G1207 met 68.2 7.9 0.00017 33.8 4.1 20 63-82 161-180 (300)
73 PTZ00146 fibrillarin; Provisio 62.5 5.5 0.00012 34.6 2.1 21 62-82 134-154 (293)
74 KOG2904 Predicted methyltransf 62.3 4.1 9E-05 35.7 1.3 54 62-120 150-217 (328)
75 COG2230 Cfa Cyclopropane fatty 62.2 36 0.00077 29.5 7.0 57 61-124 73-142 (283)
76 TIGR00138 gidB 16S rRNA methyl 61.9 5.7 0.00012 31.4 2.0 19 61-79 43-61 (181)
77 PRK13944 protein-L-isoaspartat 61.4 11 0.00024 30.1 3.6 19 62-80 74-92 (205)
78 PF13679 Methyltransf_32: Meth 61.1 16 0.00034 27.4 4.2 23 58-80 23-45 (141)
79 KOG3045 Predicted RNA methylas 60.3 4.8 0.0001 35.1 1.4 19 58-76 178-196 (325)
80 PF03291 Pox_MCEL: mRNA cappin 58.7 27 0.00057 30.6 5.7 40 34-75 38-77 (331)
81 PRK13942 protein-L-isoaspartat 58.3 14 0.0003 29.8 3.6 19 61-79 77-95 (212)
82 COG2263 Predicted RNA methylas 57.2 6.2 0.00014 32.5 1.4 53 62-123 47-112 (198)
83 TIGR00438 rrmJ cell division p 56.3 8.5 0.00019 30.0 2.1 19 61-79 33-51 (188)
84 TIGR00536 hemK_fam HemK family 56.1 14 0.0003 31.1 3.5 20 62-81 116-135 (284)
85 PRK09328 N5-glutamine S-adenos 55.9 13 0.00028 30.5 3.1 22 60-81 108-129 (275)
86 TIGR00452 methyltransferase, p 54.8 18 0.0004 31.4 4.1 19 61-79 122-140 (314)
87 KOG4589 Cell division protein 54.7 16 0.00035 30.5 3.4 23 60-82 69-91 (232)
88 TIGR03704 PrmC_rel_meth putati 54.0 16 0.00036 30.3 3.5 20 61-80 87-106 (251)
89 TIGR00537 hemK_rel_arch HemK-r 53.4 7.7 0.00017 30.0 1.4 19 62-80 21-39 (179)
90 COG1189 Predicted rRNA methyla 53.3 16 0.00034 31.2 3.3 34 41-81 67-100 (245)
91 TIGR03534 RF_mod_PrmC protein- 52.5 13 0.00029 29.7 2.7 20 61-80 88-107 (251)
92 PRK11805 N5-glutamine S-adenos 51.7 19 0.0004 31.0 3.6 20 62-81 135-154 (307)
93 PRK03522 rumB 23S rRNA methylu 50.9 20 0.00044 30.6 3.7 19 62-80 175-193 (315)
94 smart00650 rADc Ribosomal RNA 49.4 11 0.00023 29.0 1.6 20 62-81 15-34 (169)
95 TIGR01983 UbiG ubiquinone bios 49.4 12 0.00027 29.5 2.0 20 60-79 45-64 (224)
96 COG2242 CobL Precorrin-6B meth 49.4 88 0.0019 25.6 6.9 46 62-113 36-95 (187)
97 PF06325 PrmA: Ribosomal prote 49.2 25 0.00055 30.4 4.0 18 63-80 164-181 (295)
98 PF12147 Methyltransf_20: Puta 49.0 54 0.0012 28.9 6.0 17 58-74 133-149 (311)
99 PRK14966 unknown domain/N5-glu 48.8 48 0.001 30.3 5.9 45 62-113 253-311 (423)
100 PRK14896 ksgA 16S ribosomal RN 48.7 69 0.0015 26.5 6.5 20 62-81 31-50 (258)
101 PF05401 NodS: Nodulation prot 47.8 35 0.00075 28.2 4.4 68 58-161 41-120 (201)
102 TIGR00406 prmA ribosomal prote 47.6 11 0.00024 31.9 1.5 17 62-78 161-177 (288)
103 PRK00517 prmA ribosomal protei 47.3 9.2 0.0002 31.5 1.0 18 62-79 121-138 (250)
104 PRK10909 rsmD 16S rRNA m(2)G96 46.7 21 0.00046 28.9 3.0 19 62-80 55-73 (199)
105 PRK04148 hypothetical protein; 46.3 76 0.0016 24.4 5.9 45 60-117 16-73 (134)
106 TIGR03439 methyl_EasF probable 46.0 61 0.0013 28.3 5.9 25 59-83 75-99 (319)
107 PRK15001 SAM-dependent 23S rib 45.6 13 0.00029 33.2 1.8 19 62-80 230-248 (378)
108 PF07021 MetW: Methionine bios 45.5 11 0.00024 30.9 1.1 12 62-73 15-26 (193)
109 COG2264 PrmA Ribosomal protein 45.4 24 0.00053 30.8 3.3 20 60-79 162-181 (300)
110 PRK14902 16S rRNA methyltransf 44.3 48 0.001 29.7 5.2 20 62-81 252-271 (444)
111 PF13659 Methyltransf_26: Meth 44.1 21 0.00045 25.0 2.3 21 62-82 2-22 (117)
112 PRK14903 16S rRNA methyltransf 43.6 46 0.001 30.0 5.0 20 62-81 239-258 (431)
113 PRK14968 putative methyltransf 43.5 15 0.00034 27.8 1.7 18 62-79 25-42 (188)
114 PLN02585 magnesium protoporphy 43.3 16 0.00034 31.8 1.8 20 61-80 145-164 (315)
115 PRK00377 cbiT cobalt-precorrin 42.3 39 0.00085 26.6 3.9 19 61-79 41-59 (198)
116 PRK14967 putative methyltransf 42.2 12 0.00026 30.1 0.9 19 62-80 38-56 (223)
117 PF08003 Methyltransf_9: Prote 42.1 15 0.00032 32.4 1.5 20 61-80 116-135 (315)
118 PTZ00338 dimethyladenosine tra 42.0 87 0.0019 26.9 6.2 50 62-116 38-99 (294)
119 PRK13943 protein-L-isoaspartat 41.5 33 0.00072 29.9 3.6 19 62-80 82-100 (322)
120 PRK11760 putative 23S rRNA C24 41.2 30 0.00065 31.0 3.3 21 60-80 211-231 (357)
121 PF02353 CMAS: Mycolic acid cy 41.1 47 0.001 28.1 4.4 45 62-111 64-121 (273)
122 TIGR00755 ksgA dimethyladenosi 41.0 37 0.0008 27.9 3.7 20 61-80 30-49 (253)
123 PLN02232 ubiquinone biosynthes 40.8 18 0.0004 27.7 1.7 20 143-162 40-59 (160)
124 TIGR03840 TMPT_Se_Te thiopurin 40.5 18 0.0004 29.4 1.8 20 62-81 36-55 (213)
125 PF05185 PRMT5: PRMT5 arginine 39.2 29 0.00062 31.8 3.0 74 60-145 186-278 (448)
126 PRK05134 bifunctional 3-demeth 38.8 58 0.0013 25.9 4.4 19 61-79 49-67 (233)
127 PRK11705 cyclopropane fatty ac 38.6 55 0.0012 29.1 4.6 19 62-80 169-187 (383)
128 TIGR00095 RNA methyltransferas 37.3 42 0.00091 26.7 3.3 20 62-81 51-70 (189)
129 PRK13255 thiopurine S-methyltr 36.8 46 0.001 27.1 3.6 20 62-81 39-58 (218)
130 KOG2361 Predicted methyltransf 36.5 47 0.001 28.6 3.6 112 23-156 31-153 (264)
131 PRK13168 rumA 23S rRNA m(5)U19 36.1 60 0.0013 29.1 4.5 19 62-80 299-317 (443)
132 KOG3191 Predicted N6-DNA-methy 35.8 65 0.0014 26.8 4.2 38 38-83 29-66 (209)
133 TIGR00987 himA integration hos 34.9 51 0.0011 23.3 3.1 41 24-71 12-52 (96)
134 cd07378 MPP_ACP5 Homo sapiens 34.5 1.3E+02 0.0027 24.6 5.9 40 62-112 4-43 (277)
135 PRK10901 16S rRNA methyltransf 33.0 29 0.00062 31.1 1.9 20 62-81 246-265 (427)
136 PHA02734 coat protein; Provisi 33.0 29 0.00064 26.9 1.7 42 73-115 49-90 (149)
137 TIGR01444 fkbM_fam methyltrans 32.6 23 0.00051 25.8 1.1 18 63-80 1-18 (143)
138 cd00591 HU_IHF Integration hos 32.4 65 0.0014 21.8 3.3 40 25-71 11-50 (87)
139 TIGR00446 nop2p NOL1/NOP2/sun 32.0 29 0.00064 28.9 1.7 20 62-81 73-92 (264)
140 PLN03075 nicotianamine synthas 31.2 36 0.00078 29.6 2.2 20 60-79 123-142 (296)
141 PRK14904 16S rRNA methyltransf 31.1 35 0.00076 30.7 2.2 19 62-80 252-270 (445)
142 PRK14901 16S rRNA methyltransf 30.9 39 0.00084 30.3 2.4 19 62-80 254-272 (434)
143 COG4123 Predicted O-methyltran 29.4 30 0.00064 29.4 1.3 23 59-81 43-65 (248)
144 COG0293 FtsJ 23S rRNA methylas 29.1 94 0.002 25.7 4.2 24 59-82 44-67 (205)
145 PRK01544 bifunctional N5-gluta 28.7 34 0.00074 31.6 1.7 20 61-80 139-158 (506)
146 COG2890 HemK Methylase of poly 28.7 28 0.0006 29.6 1.0 21 63-83 113-133 (280)
147 cd07945 DRE_TIM_CMS Leptospira 28.5 1.7E+02 0.0037 24.9 5.8 58 25-88 101-158 (280)
148 PRK02289 4-oxalocrotonate taut 28.1 72 0.0016 20.5 2.7 40 72-116 11-51 (60)
149 PF03514 GRAS: GRAS domain fam 28.0 2E+02 0.0043 25.5 6.3 46 58-115 108-153 (374)
150 TIGR02085 meth_trns_rumB 23S r 27.7 78 0.0017 27.9 3.7 20 62-81 235-254 (374)
151 PHA03411 putative methyltransf 27.2 38 0.00082 29.3 1.6 19 62-80 66-84 (279)
152 PRK00811 spermidine synthase; 26.4 1.1E+02 0.0024 25.8 4.3 22 59-80 75-96 (283)
153 smart00400 ZnF_CHCC zinc finge 26.4 60 0.0013 20.5 2.1 20 63-82 23-42 (55)
154 TIGR00563 rsmB ribosomal RNA s 26.0 42 0.00092 30.0 1.8 19 62-80 240-258 (426)
155 PLN03065 isocitrate dehydrogen 25.7 1.4E+02 0.0031 27.9 5.1 44 38-90 425-477 (483)
156 PF01135 PCMT: Protein-L-isoas 25.6 89 0.0019 25.4 3.5 45 61-111 73-132 (209)
157 PF06080 DUF938: Protein of un 25.5 1.9E+02 0.0041 23.9 5.4 102 33-161 6-116 (204)
158 KOG1541 Predicted protein carb 25.1 40 0.00086 28.9 1.3 20 143-162 108-127 (270)
159 PF04816 DUF633: Family of unk 24.9 39 0.00085 27.5 1.2 17 64-80 1-17 (205)
160 TIGR00479 rumA 23S rRNA (uraci 24.1 1.1E+02 0.0025 27.1 4.1 19 62-80 294-312 (431)
161 PF00216 Bac_DNA_binding: Bact 24.1 60 0.0013 22.0 1.9 40 23-69 10-49 (90)
162 PRK05416 glmZ(sRNA)-inactivati 23.8 4.7E+02 0.01 22.4 8.3 72 22-113 212-285 (288)
163 COG4976 Predicted methyltransf 23.6 83 0.0018 27.2 3.0 16 61-76 126-141 (287)
164 PRK06850 hypothetical protein; 23.6 3.6E+02 0.0079 25.3 7.4 44 59-111 34-77 (507)
165 PF03676 UPF0183: Uncharacteri 22.4 64 0.0014 29.2 2.2 48 68-123 1-60 (394)
166 TIGR00988 hip integration host 22.3 94 0.002 21.6 2.6 38 27-71 15-52 (94)
167 COG1942 Uncharacterized protei 22.2 1.2E+02 0.0026 20.6 3.1 41 69-116 8-52 (69)
168 PLN02781 Probable caffeoyl-CoA 22.1 52 0.0011 27.0 1.4 22 60-81 68-89 (234)
169 KOG1528 Salt-sensitive 3'-phos 21.9 1.5E+02 0.0032 26.5 4.2 48 22-69 2-51 (351)
170 PF04648 MF_alpha: Yeast matin 21.6 32 0.00069 16.4 0.1 8 157-164 1-8 (13)
171 smart00411 BHL bacterial (prok 20.9 1.4E+02 0.003 20.3 3.2 40 25-71 12-51 (90)
172 PRK01544 bifunctional N5-gluta 20.8 1.4E+02 0.0029 27.7 4.0 106 27-159 322-429 (506)
173 PRK10333 5-formyltetrahydrofol 20.6 41 0.00089 26.6 0.5 34 131-165 126-163 (182)
174 PF03668 ATP_bind_2: P-loop AT 20.5 5.7E+02 0.012 22.2 8.7 75 22-114 209-284 (284)
175 PRK04457 spermidine synthase; 20.2 2E+02 0.0044 23.9 4.7 20 60-79 66-85 (262)
176 TIGR00417 speE spermidine synt 20.2 1.9E+02 0.0041 24.0 4.5 20 61-80 73-92 (270)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=1.5e-57 Score=400.48 Aligned_cols=154 Identities=42% Similarity=0.661 Sum_probs=138.4
Q ss_pred cccccCccccccCCCCCCchHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHH
Q 044676 4 EMETHSDSAPMNGGNGAHSYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFM 83 (166)
Q Consensus 4 ~~~~~~~~~~M~gg~G~~sY~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii 83 (166)
||+ +++++||+||+|++||++||.+|++++..++|+|++||+++.. . . ...++++|||||||+|+||+.+|++||
T Consensus 12 ~m~-~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~-~-~--~p~~~~~iaDlGcs~G~ntl~~vs~iI 86 (386)
T PLN02668 12 NMK-LEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHL-N-S--SPEVPFTAVDLGCSSGSNTIHIIDVIV 86 (386)
T ss_pred cce-eccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-c-c--CCCcceeEEEecCCCCccHHHHHHHHH
Confidence 577 5789999999999999999999999999999999999988642 1 1 023689999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCC----------------CccEEeeecccccccccCCCc
Q 044676 84 EAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQD----------------RQYFAAGVAGSFYCRLFPESS 147 (166)
Q Consensus 84 ~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~----------------~~~f~~gvpgSFY~rlfP~~S 147 (166)
++|+++|.+.+.. +|||||||||||+||||+||++||++ ++||++|||||||+||||++|
T Consensus 87 ~~i~~~~~~~~~~----~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~S 162 (386)
T PLN02668 87 KHMSKRYESAGLD----PPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARS 162 (386)
T ss_pred HHHHHHhhhcCCC----CCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCc
Confidence 9999999865433 78999999999999999999999853 249999999999999999999
Q ss_pred eeEEEecccccccccCCCC
Q 044676 148 IHFVYSSTALHWLSRVFKT 166 (166)
Q Consensus 148 vh~~~Ss~alHWLS~vP~~ 166 (166)
|||+||+||||||||+|++
T Consensus 163 lh~~~Ss~slHWLS~vP~~ 181 (386)
T PLN02668 163 IDVFHSAFSLHWLSQVPES 181 (386)
T ss_pred eEEEEeeccceecccCchh
Confidence 9999999999999999984
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.1e-48 Score=338.80 Aligned_cols=118 Identities=50% Similarity=0.871 Sum_probs=93.9
Q ss_pred HHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcC-CCCCCCCCceEEEecCCCCCchHHH
Q 044676 41 IVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQG-PAHSQILPQFQVFFNDQVLNDFNTL 119 (166)
Q Consensus 41 l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~-~~~~~~~~eiqv~~nDLP~NDFntL 119 (166)
|++||++++... ..+++|+|||||||+|+||+.+|+.||++|+++|++.. ++ +|||||||||||+||||+|
T Consensus 1 ~~~ai~~~~~~~----~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~----~~e~~v~~nDlP~NDFn~l 72 (334)
T PF03492_consen 1 LEEAIKELYNSS----NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQP----PPEFQVFFNDLPSNDFNTL 72 (334)
T ss_dssp -HHHHHHHHHST----TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS------EEEEEEEE-TTS-HHHH
T ss_pred ChHHHHHHHhcC----CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCC----CCeEEEEeCCCCCccHHHH
Confidence 588999987532 26889999999999999999999999999999998664 33 7899999999999999999
Q ss_pred hhhCCCC-------CccEEeeecccccccccCCCceeEEEecccccccccCCCC
Q 044676 120 FRYLPQD-------RQYFAAGVAGSFYCRLFPESSIHFVYSSTALHWLSRVFKT 166 (166)
Q Consensus 120 F~~L~~~-------~~~f~~gvpgSFY~rlfP~~Svh~~~Ss~alHWLS~vP~~ 166 (166)
|++|+.+ ++||++|||||||+||||++||||+||+||||||||+|++
T Consensus 73 F~~l~~~~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~ 126 (334)
T PF03492_consen 73 FKSLPSFQQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEE 126 (334)
T ss_dssp HHCHHHHHHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CC
T ss_pred HHhChhhhhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcc
Confidence 9999976 7999999999999999999999999999999999999975
No 3
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.61 E-value=0.00023 Score=56.70 Aligned_cols=107 Identities=21% Similarity=0.322 Sum_probs=69.5
Q ss_pred CchHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCC
Q 044676 21 HSYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQI 100 (166)
Q Consensus 21 ~sY~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~ 100 (166)
.+|.+.+..|+.......+.+... . ..++.+|.|+||.+|..+..+.. ..
T Consensus 7 ~~y~~~~~~q~~~~~~l~~~~~~~----~--------~~~~~~vLDlG~G~G~~~~~l~~--------~~---------- 56 (240)
T TIGR02072 7 KTYDRHAKIQREMAKRLLALLKEK----G--------IFIPASVLDIGCGTGYLTRALLK--------RF---------- 56 (240)
T ss_pred hchhHHHHHHHHHHHHHHHHhhhh----c--------cCCCCeEEEECCCccHHHHHHHH--------hC----------
Confidence 468888888987665554444311 0 13347899999999987654322 11
Q ss_pred CCceEEEecCCCCCchHHHhhhCCCCCccEEeeecccccccccCCCceeEEEeccccccccc
Q 044676 101 LPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFYCRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 101 ~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
+..++..-|......+..-+.+++ +-.| +-+.+-...+|+++.|++++..++||+..
T Consensus 57 -~~~~~~~~D~~~~~~~~~~~~~~~-~~~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 57 -PQAEFIALDISAGMLAQAKTKLSE-NVQF---ICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred -CCCcEEEEeChHHHHHHHHHhcCC-CCeE---EecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 235678888766555555555542 1112 23466666788999999999999999853
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.87 E-value=0.0026 Score=52.26 Aligned_cols=102 Identities=19% Similarity=0.317 Sum_probs=58.1
Q ss_pred CCchHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCC
Q 044676 20 AHSYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQ 99 (166)
Q Consensus 20 ~~sY~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~ 99 (166)
...|.+++..|.+... .++. . +. ....-+|.|+||.+|..+..+.. .+
T Consensus 6 ~~~Y~~~~~~~~~~~~---~ll~----~-~~-------~~~~~~vLDiGcG~G~~~~~la~--------~~--------- 53 (258)
T PRK01683 6 PSLYLKFEDERTRPAR---DLLA----R-VP-------LENPRYVVDLGCGPGNSTELLVE--------RW--------- 53 (258)
T ss_pred HHHHHHHHHHhhcHHH---HHHh----h-CC-------CcCCCEEEEEcccCCHHHHHHHH--------HC---------
Confidence 3569888887755433 2221 1 21 12346899999999988765432 11
Q ss_pred CCCceEEEecCCCCCchHHHhhhCCCCCcc-EEeeecccccccccCCCceeEEEeccccccccc
Q 044676 100 ILPQFQVFFNDQVLNDFNTLFRYLPQDRQY-FAAGVAGSFYCRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 100 ~~~eiqv~~nDLP~NDFntLF~~L~~~~~~-f~~gvpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
+.-+|+..|+... .=...+... ..+ |.. +.+ ..+.|+++.|+++|..++||+..
T Consensus 54 --~~~~v~gvD~s~~-~i~~a~~~~--~~~~~~~---~d~-~~~~~~~~fD~v~~~~~l~~~~d 108 (258)
T PRK01683 54 --PAARITGIDSSPA-MLAEARSRL--PDCQFVE---ADI-ASWQPPQALDLIFANASLQWLPD 108 (258)
T ss_pred --CCCEEEEEECCHH-HHHHHHHhC--CCCeEEE---Cch-hccCCCCCccEEEEccChhhCCC
Confidence 2346777775432 222222111 111 222 233 23457789999999999999854
No 5
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=96.84 E-value=0.0038 Score=51.16 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=54.9
Q ss_pred chHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 044676 22 SYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQIL 101 (166)
Q Consensus 22 sY~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~ 101 (166)
.|.+....|+.........+ . ....-+|.|+||.+|..+..+ .+.
T Consensus 19 ~Y~~~~~~q~~~a~~l~~~l--------~-------~~~~~~vLDiGcG~G~~~~~l--------~~~------------ 63 (251)
T PRK10258 19 HYEQHAELQRQSADALLAML--------P-------QRKFTHVLDAGCGPGWMSRYW--------RER------------ 63 (251)
T ss_pred hHhHHHHHHHHHHHHHHHhc--------C-------ccCCCeEEEeeCCCCHHHHHH--------HHc------------
Confidence 57777777766554433222 1 122356999999999766543 111
Q ss_pred CceEEEecCCCCCchHHHhhhCCCCCccEEeeecccccccccCCCceeEEEeccccccccc
Q 044676 102 PQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFYCRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 102 ~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
..+|+-.|+-.. .-...+.... ...|.. +..-.--+|+++.|+++|..++||...
T Consensus 64 -~~~v~~~D~s~~-~l~~a~~~~~-~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~~d 118 (251)
T PRK10258 64 -GSQVTALDLSPP-MLAQARQKDA-ADHYLA---GDIESLPLATATFDLAWSNLAVQWCGN 118 (251)
T ss_pred -CCeEEEEECCHH-HHHHHHhhCC-CCCEEE---cCcccCcCCCCcEEEEEECchhhhcCC
Confidence 135666665331 1111111100 112322 333333478899999999999999754
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=96.38 E-value=0.013 Score=48.44 Aligned_cols=100 Identities=17% Similarity=0.165 Sum_probs=58.5
Q ss_pred CchHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCC
Q 044676 21 HSYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQI 100 (166)
Q Consensus 21 ~sY~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~ 100 (166)
..|.+++..|.+.+.. ++ +. +. ....-+|.|+||.+|..+..+ .++.
T Consensus 5 ~~y~~~~~~~~~~~~~---ll----~~-l~-------~~~~~~vLDlGcG~G~~~~~l--------~~~~---------- 51 (255)
T PRK14103 5 DVYLAFADHRGRPFYD---LL----AR-VG-------AERARRVVDLGCGPGNLTRYL--------ARRW---------- 51 (255)
T ss_pred HHHHHHHhHhhCHHHH---HH----Hh-CC-------CCCCCEEEEEcCCCCHHHHHH--------HHHC----------
Confidence 4699999888765432 22 11 21 223468999999999765432 2221
Q ss_pred CCceEEEecCCCCCchHHHhhhCCCCCccEEeeecccccccccCCCceeEEEeccccccccc
Q 044676 101 LPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFYCRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 101 ~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
|..+|+--|+- -+.-...+.- .--|. -+.+ ..+.|+++.|+++|..++||+..
T Consensus 52 -p~~~v~gvD~s-~~~~~~a~~~---~~~~~---~~d~-~~~~~~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 52 -PGAVIEALDSS-PEMVAAARER---GVDAR---TGDV-RDWKPKPDTDVVVSNAALQWVPE 104 (255)
T ss_pred -CCCEEEEEECC-HHHHHHHHhc---CCcEE---EcCh-hhCCCCCCceEEEEehhhhhCCC
Confidence 23466666753 2222223221 11122 2343 35667889999999999999864
No 7
>PRK06202 hypothetical protein; Provisional
Probab=96.37 E-value=0.025 Score=45.98 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=49.0
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCcc-EEeeeccc
Q 044676 59 SVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQY-FAAGVAGS 137 (166)
Q Consensus 59 ~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~-f~~gvpgS 137 (166)
.+..+|.|+||.+|..+..+.. ..++ . .+..+|.--|+-. +.-...+......++ +..+....
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~----~~~~----~-------g~~~~v~gvD~s~-~~l~~a~~~~~~~~~~~~~~~~~~ 122 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLAR----WARR----D-------GLRLEVTAIDPDP-RAVAFARANPRRPGVTFRQAVSDE 122 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHH----HHHh----C-------CCCcEEEEEcCCH-HHHHHHHhccccCCCeEEEEeccc
Confidence 4457999999999987764322 2221 1 1345777777633 333333332211111 22222222
Q ss_pred ccccccCCCceeEEEeccccccccc
Q 044676 138 FYCRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 138 FY~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
+ -+++++.|+++++.+|||+..
T Consensus 123 l---~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 123 L---VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred c---cccCCCccEEEECCeeecCCh
Confidence 2 136789999999999999864
No 8
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.93 E-value=0.014 Score=47.04 Aligned_cols=81 Identities=16% Similarity=0.101 Sum_probs=46.5
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhh-CCC--CCccEEeeeccc
Q 044676 61 PFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRY-LPQ--DRQYFAAGVAGS 137 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~-L~~--~~~~f~~gvpgS 137 (166)
.-+|.|+||.+|..+..+... . .+..+|+--|+..+ .-...+. +.. ..+ +.-+.+.
T Consensus 46 ~~~vLDiGcG~G~~~~~la~~--------~----------~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~--v~~~~~d 104 (231)
T TIGR02752 46 GTSALDVCCGTADWSIALAEA--------V----------GPEGHVIGLDFSEN-MLSVGRQKVKDAGLHN--VELVHGN 104 (231)
T ss_pred CCEEEEeCCCcCHHHHHHHHH--------h----------CCCCEEEEEECCHH-HHHHHHHHHHhcCCCc--eEEEEec
Confidence 368999999999976644321 1 12346677776432 2112211 111 111 1223334
Q ss_pred ccccccCCCceeEEEeccccccccc
Q 044676 138 FYCRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 138 FY~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
...--+|+++.|++++.+++||++.
T Consensus 105 ~~~~~~~~~~fD~V~~~~~l~~~~~ 129 (231)
T TIGR02752 105 AMELPFDDNSFDYVTIGFGLRNVPD 129 (231)
T ss_pred hhcCCCCCCCccEEEEecccccCCC
Confidence 4443468899999999999999754
No 9
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=95.71 E-value=0.076 Score=40.17 Aligned_cols=81 Identities=17% Similarity=0.166 Sum_probs=44.2
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCC---chHHHhhhCCCCCccEEeeecc
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLN---DFNTLFRYLPQDRQYFAAGVAG 136 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~N---DFntLF~~L~~~~~~f~~gvpg 136 (166)
+..+|.|+||.+|..++.+.. +. .+..+++.-|+-.. --+..++.+.-.+--|.. +
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~-------~~-----------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~---~ 61 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK-------EL-----------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQ---G 61 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH-------HS-----------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEE---S
T ss_pred CCCEEEEecCcCcHHHHHHHH-------hc-----------CCCCEEEEEECcHHHHHHhhcccccccccccceEE---e
Confidence 357899999999999877653 10 12345555554321 122233333222111222 2
Q ss_pred cccc--cccCCCceeEEEeccccccccc
Q 044676 137 SFYC--RLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 137 SFY~--rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
..-+ +.++ +..|++++..++||+..
T Consensus 62 d~~~l~~~~~-~~~D~I~~~~~l~~~~~ 88 (152)
T PF13847_consen 62 DIEDLPQELE-EKFDIIISNGVLHHFPD 88 (152)
T ss_dssp BTTCGCGCSS-TTEEEEEEESTGGGTSH
T ss_pred ehhccccccC-CCeeEEEEcCchhhccC
Confidence 3332 2244 89999999999998753
No 10
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.50 E-value=0.066 Score=43.37 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=54.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q 044676 23 YSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILP 102 (166)
Q Consensus 23 Y~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~ 102 (166)
|.+....+.. +.....++.+++.. + +..-+|.|+||.+|..+..+... . +
T Consensus 17 ~~~rn~~~~~-~~~~~~~~~~~l~~-~---------~~~~~VLDiGCG~G~~~~~L~~~--------~-----------~ 66 (204)
T TIGR03587 17 YIDRNSRQSL-VAAKLAMFARALNR-L---------PKIASILELGANIGMNLAALKRL--------L-----------P 66 (204)
T ss_pred hhhccccHHH-HHHHHHHHHHHHHh-c---------CCCCcEEEEecCCCHHHHHHHHh--------C-----------C
Confidence 5555554433 33345555555543 1 22356999999999876654321 0 1
Q ss_pred ceEEEecCCCCCchHHHhhh-CCCCCccEEeeecccccccccCCCceeEEEecccccccc
Q 044676 103 QFQVFFNDQVLNDFNTLFRY-LPQDRQYFAAGVAGSFYCRLFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 103 eiqv~~nDLP~NDFntLF~~-L~~~~~~f~~gvpgSFY~rlfP~~Svh~~~Ss~alHWLS 161 (166)
..+++--|+-..=.. ..+. ++. .. + +.++... -+|+++.|++++..+||+++
T Consensus 67 ~~~v~giDiS~~~l~-~A~~~~~~-~~-~---~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 67 FKHIYGVEINEYAVE-KAKAYLPN-IN-I---IQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCeEEEEECCHHHHH-HHHhhCCC-Cc-E---EEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 234444443222111 1111 221 11 1 2244445 67899999999999998774
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.34 E-value=0.15 Score=35.96 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=34.7
Q ss_pred eEEEeecCCCCcccHHHHH--------------HHHHHHHHHHhhcCCCCCCCCCceEEEecCC
Q 044676 62 FTLADLGCSVGPNTVIAMQ--------------NFMEAIKLKYQDQGPAHSQILPQFQVFFNDQ 111 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~--------------~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDL 111 (166)
-+|.|+||.+|..++.+.. ..++..+++...... .+.++++..|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECcc
Confidence 4699999999999999888 678888877733221 35688888776
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=95.31 E-value=0.017 Score=43.04 Aligned_cols=71 Identities=20% Similarity=0.218 Sum_probs=43.7
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCccEEeeecccc
Q 044676 59 SVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSF 138 (166)
Q Consensus 59 ~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSF 138 (166)
...-+|.|+||..|.++..+ ++. . .++...|.-...-.. ...++..|
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l--------~~~-----------~--~~~~g~D~~~~~~~~------------~~~~~~~~ 67 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL--------AKR-----------G--FEVTGVDISPQMIEK------------RNVVFDNF 67 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH--------HHT-----------T--SEEEEEESSHHHHHH------------TTSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHH--------HHh-----------C--CEEEEEECCHHHHhh------------hhhhhhhh
Confidence 44578999999999764332 211 1 266666653322222 11112233
Q ss_pred c--ccccCCCceeEEEeccccccccc
Q 044676 139 Y--CRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 139 Y--~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
. ...+|+++.|+++++.+|||+..
T Consensus 68 ~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 68 DAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp ECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred hhhhhhccccchhhHhhHHHHhhccc
Confidence 2 44468899999999999999974
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=94.84 E-value=0.048 Score=36.70 Aligned_cols=73 Identities=22% Similarity=0.197 Sum_probs=41.3
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCccEEeeecccccccccC
Q 044676 65 ADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFYCRLFP 144 (166)
Q Consensus 65 ADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY~rlfP 144 (166)
.|+||..|..+..+.+. +...|+-.|.-.. .-...+........- -+-+++..--||
T Consensus 1 LdiG~G~G~~~~~l~~~--------------------~~~~v~~~D~~~~-~~~~~~~~~~~~~~~--~~~~d~~~l~~~ 57 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------------------GGASVTGIDISEE-MLEQARKRLKNEGVS--FRQGDAEDLPFP 57 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------------------TTCEEEEEES-HH-HHHHHHHHTTTSTEE--EEESBTTSSSS-
T ss_pred CEecCcCCHHHHHHHhc--------------------cCCEEEEEeCCHH-HHHHHHhcccccCch--heeehHHhCccc
Confidence 49999999987765433 0134444453222 112222221111211 333467777899
Q ss_pred CCceeEEEeccccccc
Q 044676 145 ESSIHFVYSSTALHWL 160 (166)
Q Consensus 145 ~~Svh~~~Ss~alHWL 160 (166)
++|+|++++..++||+
T Consensus 58 ~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 58 DNSFDVVFSNSVLHHL 73 (95)
T ss_dssp TT-EEEEEEESHGGGS
T ss_pred cccccccccccceeec
Confidence 9999999999999998
No 14
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=94.45 E-value=0.13 Score=41.11 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=16.2
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
.-+|.|+||..|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~La 49 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA 49 (197)
T ss_pred CCcEEEECCCCCHHHHHHH
Confidence 3579999999999988764
No 15
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=94.23 E-value=0.037 Score=47.31 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=23.2
Q ss_pred cccccccCCCceeEEEecccccccccCCC
Q 044676 137 SFYCRLFPESSIHFVYSSTALHWLSRVFK 165 (166)
Q Consensus 137 SFY~rlfP~~Svh~~~Ss~alHWLS~vP~ 165 (166)
-|-. |-++|+|+++||.++||...+|.
T Consensus 129 E~Ld--f~ens~DLiisSlslHW~NdLPg 155 (325)
T KOG2940|consen 129 EFLD--FKENSVDLIISSLSLHWTNDLPG 155 (325)
T ss_pred hccc--ccccchhhhhhhhhhhhhccCch
Confidence 3444 78899999999999999999885
No 16
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.22 E-value=0.45 Score=37.91 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=16.2
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
..+|.|+||.+|..+..+.
T Consensus 64 ~~~vLDvGcG~G~~~~~l~ 82 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLA 82 (230)
T ss_pred CCEEEEEeCCCCHHHHHHH
Confidence 4689999999999887765
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=93.88 E-value=0.11 Score=41.38 Aligned_cols=83 Identities=17% Similarity=0.081 Sum_probs=48.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCC---CCccEEeeeccc
Q 044676 61 PFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQ---DRQYFAAGVAGS 137 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~---~~~~f~~gvpgS 137 (166)
..+|+|+||..|..+..+.... ++..+++.-|+..+-....=+.+.. ...+ .-+-++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~------------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~--~~~~~d 111 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV------------------GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNV--EFVQGD 111 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc------------------CCCCeEEEEeCCHHHHHHHHHhhcccccccCe--EEEecc
Confidence 4789999999998766543221 1134666777644322221111111 1111 112235
Q ss_pred ccccccCCCceeEEEecccccccccC
Q 044676 138 FYCRLFPESSIHFVYSSTALHWLSRV 163 (166)
Q Consensus 138 FY~rlfP~~Svh~~~Ss~alHWLS~v 163 (166)
+....+++.+.|++++++.+|++...
T Consensus 112 ~~~~~~~~~~~D~I~~~~~l~~~~~~ 137 (239)
T PRK00216 112 AEALPFPDNSFDAVTIAFGLRNVPDI 137 (239)
T ss_pred cccCCCCCCCccEEEEecccccCCCH
Confidence 55555677899999999999987653
No 18
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.48 E-value=0.19 Score=42.48 Aligned_cols=18 Identities=33% Similarity=0.593 Sum_probs=15.9
Q ss_pred EEEeecCCCCcccHHHHH
Q 044676 63 TLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 63 ~IADlGCS~G~Nsl~~~~ 80 (166)
+|.|+||.+|.|++.+..
T Consensus 123 ~vLDlGcG~G~~~~~la~ 140 (287)
T PRK12335 123 KALDLGCGQGRNSLYLAL 140 (287)
T ss_pred CEEEeCCCCCHHHHHHHH
Confidence 799999999999987753
No 19
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=93.24 E-value=0.24 Score=34.77 Aligned_cols=18 Identities=33% Similarity=0.591 Sum_probs=13.7
Q ss_pred EEeecCCCCcccHHHHHH
Q 044676 64 LADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 64 IADlGCS~G~Nsl~~~~~ 81 (166)
|.|+||.+|..+..+...
T Consensus 1 ILDlgcG~G~~~~~l~~~ 18 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR 18 (101)
T ss_dssp -EEET-TTSHHHHHHHHH
T ss_pred CEEeecCCcHHHHHHHHH
Confidence 789999999998877655
No 20
>PRK06922 hypothetical protein; Provisional
Probab=93.11 E-value=0.2 Score=48.01 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=16.9
Q ss_pred ccCCCceeEEEeccccccc
Q 044676 142 LFPESSIHFVYSSTALHWL 160 (166)
Q Consensus 142 lfP~~Svh~~~Ss~alHWL 160 (166)
.||++++|++++++++||+
T Consensus 482 ~fedeSFDvVVsn~vLH~L 500 (677)
T PRK06922 482 SFEKESVDTIVYSSILHEL 500 (677)
T ss_pred ccCCCCEEEEEEchHHHhh
Confidence 4788999999999999975
No 21
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=92.95 E-value=0.29 Score=41.17 Aligned_cols=19 Identities=11% Similarity=0.394 Sum_probs=17.0
Q ss_pred cCCCceeEEEecccccccc
Q 044676 143 FPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 143 fP~~Svh~~~Ss~alHWLS 161 (166)
+|.++.|+++|...|||++
T Consensus 199 ~~~~~fD~I~crnvl~yf~ 217 (264)
T smart00138 199 PPLGDFDLIFCRNVLIYFD 217 (264)
T ss_pred CccCCCCEEEechhHHhCC
Confidence 4688999999999999986
No 22
>PRK05785 hypothetical protein; Provisional
Probab=92.81 E-value=0.21 Score=40.93 Aligned_cols=75 Identities=23% Similarity=0.223 Sum_probs=44.4
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCccEEeeecccccc
Q 044676 61 PFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFYC 140 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY~ 140 (166)
.-+|.|+||.+|..+..+.... ..+|+--|+ +-+.=.+.+.- .-++ -+++-.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--------------------~~~v~gvD~-S~~Ml~~a~~~----~~~~---~~d~~~ 103 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--------------------KYYVVALDY-AENMLKMNLVA----DDKV---VGSFEA 103 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--------------------CCEEEEECC-CHHHHHHHHhc----cceE---Eechhh
Confidence 4689999999998876543221 124444453 22222222211 1122 234444
Q ss_pred cccCCCceeEEEecccccccccC
Q 044676 141 RLFPESSIHFVYSSTALHWLSRV 163 (166)
Q Consensus 141 rlfP~~Svh~~~Ss~alHWLS~v 163 (166)
-=||++|.|.++++++|||+...
T Consensus 104 lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 104 LPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred CCCCCCCEEEEEecChhhccCCH
Confidence 44789999999999999998653
No 23
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=92.58 E-value=0.26 Score=40.03 Aligned_cols=72 Identities=19% Similarity=0.149 Sum_probs=42.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCccEEeeecccccc
Q 044676 61 PFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFYC 140 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY~ 140 (166)
.-+|+|+||++|.-+..+... . .+.-+|+--|+-. . ..++ .+ ..+-|.+..
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~--------~----------~~~~~V~aVDi~~--~----~~~~---~v--~~i~~D~~~ 102 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQ--------I----------GDKGRVIACDILP--M----DPIV---GV--DFLQGDFRD 102 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHH--------c----------CCCceEEEEeccc--c----cCCC---Cc--EEEecCCCC
Confidence 358999999999876654421 1 1123555556522 1 1111 22 222345655
Q ss_pred c--------ccCCCceeEEEecccccccc
Q 044676 141 R--------LFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 141 r--------lfP~~Svh~~~Ss~alHWLS 161 (166)
. -+++.++|+++|..+.||.-
T Consensus 103 ~~~~~~i~~~~~~~~~D~V~S~~~~~~~g 131 (209)
T PRK11188 103 ELVLKALLERVGDSKVQVVMSDMAPNMSG 131 (209)
T ss_pred hHHHHHHHHHhCCCCCCEEecCCCCccCC
Confidence 2 26788999999999999853
No 24
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=92.28 E-value=2.3 Score=34.02 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=16.5
Q ss_pred CceEEEeecCCCCcccHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~ 79 (166)
+.-+|.|+||.+|..+..+.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la 74 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA 74 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH
Confidence 35789999999999877664
No 25
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=92.21 E-value=0.21 Score=40.13 Aligned_cols=46 Identities=9% Similarity=-0.041 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHH
Q 044676 29 YQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 29 ~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~ 79 (166)
+|+.+.....|.+-....+...+- ....-+|.|+||.+|..++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~VLDiGcGtG~~~~~la 59 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELF-----GNDAPIHLEIGFGKGEFLVEMA 59 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHc-----CCCCCeEEEEccCCCHHHHHHH
Confidence 455666666666533332222210 1245789999999999988654
No 26
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=92.15 E-value=0.2 Score=39.90 Aligned_cols=19 Identities=37% Similarity=0.695 Sum_probs=16.5
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
+-+|.|+||.+|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la 49 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLS 49 (195)
T ss_pred CCcEEEeCCCCCHHHHHHH
Confidence 4689999999999998765
No 27
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=91.50 E-value=0.51 Score=37.04 Aligned_cols=83 Identities=11% Similarity=-0.024 Sum_probs=46.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCccEEeeeccccc
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFY 139 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY 139 (166)
...+|.|+||..|..+..+.... +...+++.-|+...-....=+.+....++- -+.+.+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~------------------~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~--~~~~d~~ 98 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA------------------PDRGKVTGVDFSSEMLEVAKKKSELPLNIE--FIQADAE 98 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc------------------CCCceEEEEECCHHHHHHHHHHhccCCCce--EEecchh
Confidence 45789999999998766543211 112456666653221111111121111121 1224555
Q ss_pred ccccCCCceeEEEeccccccccc
Q 044676 140 CRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 140 ~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
+..++++++|++++++.+|+...
T Consensus 99 ~~~~~~~~~D~i~~~~~~~~~~~ 121 (223)
T TIGR01934 99 ALPFEDNSFDAVTIAFGLRNVTD 121 (223)
T ss_pred cCCCCCCcEEEEEEeeeeCCccc
Confidence 55577889999999999998754
No 28
>PLN02244 tocopherol O-methyltransferase
Probab=91.50 E-value=1.9 Score=37.49 Aligned_cols=21 Identities=24% Similarity=0.594 Sum_probs=17.0
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~ 80 (166)
..-+|.|+||..|..+..+..
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~ 138 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLAR 138 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHH
Confidence 456899999999998876654
No 29
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=91.45 E-value=1.1 Score=36.86 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=15.3
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
.-+|.|+||.+|.+++.+.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~ 75 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVR 75 (247)
T ss_pred CCEEEEEcccCCHHHHHHH
Confidence 3679999999999876543
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=91.45 E-value=0.29 Score=39.87 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=43.1
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhh-CCCCC-ccEEeeecccc
Q 044676 61 PFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRY-LPQDR-QYFAAGVAGSF 138 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~-L~~~~-~~f~~gvpgSF 138 (166)
.-+|.|+||.+|..+..+...+ . .|..+|+--|+-. +.=...+. +.... ..-+.-+-+.+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~----~-------------~p~~~v~gvD~s~-~ml~~a~~~~~~~~~~~~v~~~~~d~ 115 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNI----N-------------QPNVKIIGIDNSQ-PMVERCRQHIAAYHSEIPVEILCNDI 115 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhc----C-------------CCCCeEEEEeCCH-HHHHHHHHHHHhcCCCCCeEEEECCh
Confidence 3579999999998776544221 0 1345666666532 22222221 11110 00112233455
Q ss_pred cccccCCCceeEEEecccccccc
Q 044676 139 YCRLFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 139 Y~rlfP~~Svh~~~Ss~alHWLS 161 (166)
..--+| ..|++++.+++||+.
T Consensus 116 ~~~~~~--~~d~v~~~~~l~~~~ 136 (239)
T TIGR00740 116 RHVEIK--NASMVILNFTLQFLP 136 (239)
T ss_pred hhCCCC--CCCEEeeecchhhCC
Confidence 443334 467899999999985
No 31
>PRK08317 hypothetical protein; Provisional
Probab=91.29 E-value=1.1 Score=35.28 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=43.6
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCC-CCcc-EEeeeccc
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQ-DRQY-FAAGVAGS 137 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~-~~~~-f~~gvpgS 137 (166)
...+|.|+||..|..+..+.... .+.-+++--|+...-....-+.... ...+ |.. +.
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~------------------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~---~d 77 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV------------------GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR---GD 77 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc------------------CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEe---cc
Confidence 34689999999998766543322 0123455555533222211111000 0111 111 23
Q ss_pred ccccccCCCceeEEEeccccccccc
Q 044676 138 FYCRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 138 FY~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
+...-+++.+.|++++..++||+..
T Consensus 78 ~~~~~~~~~~~D~v~~~~~~~~~~~ 102 (241)
T PRK08317 78 ADGLPFPDGSFDAVRSDRVLQHLED 102 (241)
T ss_pred cccCCCCCCCceEEEEechhhccCC
Confidence 3333367788999999999988765
No 32
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=90.98 E-value=1.1 Score=37.49 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=46.4
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhh-CCCCCccEEeeecccc
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRY-LPQDRQYFAAGVAGSF 138 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~-L~~~~~~f~~gvpgSF 138 (166)
...+|.|+||..|..+..+.. .. ..+|+--|+..+-- ...+. ...... +.-+.+++
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~--------~~------------~~~v~giD~s~~~~-~~a~~~~~~~~~--i~~~~~D~ 108 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINE--------KY------------GAHVHGVDICEKMV-NIAKLRNSDKNK--IEFEANDI 108 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHh--------hc------------CCEEEEEECCHHHH-HHHHHHcCcCCc--eEEEECCc
Confidence 346899999999997765431 11 13566666543221 12222 111111 22234566
Q ss_pred cccccCCCceeEEEecccccccc
Q 044676 139 YCRLFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 139 Y~rlfP~~Svh~~~Ss~alHWLS 161 (166)
...-||+++.|++++..++++++
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~ 131 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLS 131 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCC
Confidence 66668899999999988876653
No 33
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=90.96 E-value=0.51 Score=39.69 Aligned_cols=86 Identities=16% Similarity=0.079 Sum_probs=53.0
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCccEEeeeccccc
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFY 139 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY 139 (166)
...+|.|+||-+|--++.+...+ ++-+|..-|...+=.+.-=+.+.......+.=|=|..-
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~-------------------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe 111 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV-------------------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAE 111 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc-------------------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechh
Confidence 46899999999998777654322 13455555644433333333232211111222223555
Q ss_pred ccccCCCceeEEEecccccccccCC
Q 044676 140 CRLFPESSIHFVYSSTALHWLSRVF 164 (166)
Q Consensus 140 ~rlfP~~Svh~~~Ss~alHWLS~vP 164 (166)
+=-||++|.|++.++|.|||+.+.+
T Consensus 112 ~LPf~D~sFD~vt~~fglrnv~d~~ 136 (238)
T COG2226 112 NLPFPDNSFDAVTISFGLRNVTDID 136 (238)
T ss_pred hCCCCCCccCEEEeeehhhcCCCHH
Confidence 5559999999999999999998765
No 34
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=90.82 E-value=0.8 Score=40.38 Aligned_cols=79 Identities=14% Similarity=0.092 Sum_probs=45.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCccEEeeecccccc
Q 044676 61 PFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFYC 140 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY~ 140 (166)
..+|.|+||.+|..++.+.... +..+|..-|+..+ .-...+......++ .-+.|+...
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~-------------------~~~~VtgVD~S~~-mL~~A~~k~~~~~i--~~i~gD~e~ 171 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV-------------------DAKNVTILDQSPH-QLAKAKQKEPLKEC--KIIEGDAED 171 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC-------------------CCCEEEEEECCHH-HHHHHHHhhhccCC--eEEeccHHh
Confidence 4789999999998776543211 1235666665332 22222221111111 113445544
Q ss_pred cccCCCceeEEEecccccccc
Q 044676 141 RLFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 141 rlfP~~Svh~~~Ss~alHWLS 161 (166)
--||+++.|++++..++|++.
T Consensus 172 lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 172 LPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCCCCceeEEEEcChhhhCC
Confidence 446788999999999998764
No 35
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=90.73 E-value=0.31 Score=38.51 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.8
Q ss_pred cCCCceeEEEeccccccccc
Q 044676 143 FPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 143 fP~~Svh~~~Ss~alHWLS~ 162 (166)
+++++.|++++..+|||+..
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcC
Confidence 67899999999999999854
No 36
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=90.44 E-value=1.5 Score=36.55 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=17.8
Q ss_pred cCCCceeEEEeccccccccc
Q 044676 143 FPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 143 fP~~Svh~~~Ss~alHWLS~ 162 (166)
||++|.|++++++++||+..
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d 160 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVD 160 (261)
T ss_pred CCCCCEeEEEEecccccCCC
Confidence 78899999999999999753
No 37
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=90.02 E-value=1.2 Score=38.06 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=25.2
Q ss_pred HHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHH
Q 044676 39 DKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNF 82 (166)
Q Consensus 39 ~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~i 82 (166)
.++++..+++... .+...+|.|+||.+|.-|..++...
T Consensus 48 ~il~~~~~~ia~~------~~~~~~iLELGcGtG~~t~~Ll~~l 85 (301)
T TIGR03438 48 AILERHADEIAAA------TGAGCELVELGSGSSRKTRLLLDAL 85 (301)
T ss_pred HHHHHHHHHHHHh------hCCCCeEEecCCCcchhHHHHHHhh
Confidence 4555555543321 2234679999999999998877664
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.69 E-value=0.79 Score=41.16 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=46.9
Q ss_pred ceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCccEEeeecccccc
Q 044676 61 PFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFYC 140 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY~ 140 (166)
.-+|.|+||.+|..++.+. +.. ..+|+--|+.. +.-...+.-......-+.-+-+.+..
T Consensus 267 ~~~vLDiGcG~G~~~~~la--------~~~------------~~~v~gvDiS~-~~l~~A~~~~~~~~~~v~~~~~d~~~ 325 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMA--------ENF------------DVHVVGIDLSV-NMISFALERAIGRKCSVEFEVADCTK 325 (475)
T ss_pred CCEEEEEeccCCHHHHHHH--------Hhc------------CCEEEEEECCH-HHHHHHHHHhhcCCCceEEEEcCccc
Confidence 4689999999998655432 111 23566667642 22222221100111111222346666
Q ss_pred cccCCCceeEEEeccccccccc
Q 044676 141 RLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 141 rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
..+|+++.|+++|..+++|+..
T Consensus 326 ~~~~~~~fD~I~s~~~l~h~~d 347 (475)
T PLN02336 326 KTYPDNSFDVIYSRDTILHIQD 347 (475)
T ss_pred CCCCCCCEEEEEECCcccccCC
Confidence 6788999999999999999854
No 39
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.58 E-value=0.71 Score=41.47 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=17.9
Q ss_pred cCCCceeEEEeccccccccc
Q 044676 143 FPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 143 fP~~Svh~~~Ss~alHWLS~ 162 (166)
+|+++.|++++..++||++.
T Consensus 99 ~~~~~fD~I~~~~~l~~l~~ 118 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYLSD 118 (475)
T ss_pred CCCCCEEEEehhhhHHhCCH
Confidence 68899999999999999863
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=89.51 E-value=0.46 Score=40.22 Aligned_cols=23 Identities=22% Similarity=0.585 Sum_probs=19.3
Q ss_pred ccccCCCceeEEEeccccccccc
Q 044676 140 CRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 140 ~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
...-|+...|+.|+.-+||||..
T Consensus 85 ~~w~p~~~~dllfaNAvlqWlpd 107 (257)
T COG4106 85 RTWKPEQPTDLLFANAVLQWLPD 107 (257)
T ss_pred hhcCCCCccchhhhhhhhhhccc
Confidence 45668899999999999999864
No 41
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=89.16 E-value=0.77 Score=37.84 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=42.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhh-CCC---CCcc-EEeee
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRY-LPQ---DRQY-FAAGV 134 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~-L~~---~~~~-f~~gv 134 (166)
++.+|.|+||.+|..++.+... ..+|+.-|+.. +.-...+. +.. ..++ |+.
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~---------------------g~~v~~vD~s~-~~l~~a~~~~~~~g~~~~v~~~~-- 99 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL---------------------GHQVILCDLSA-EMIQRAKQAAEAKGVSDNMQFIH-- 99 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc---------------------CCEEEEEECCH-HHHHHHHHHHHhcCCccceEEEE--
Confidence 3569999999999877665321 12455555432 12112221 111 0111 222
Q ss_pred ccccccc-ccCCCceeEEEeccccccccc
Q 044676 135 AGSFYCR-LFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 135 pgSFY~r-lfP~~Svh~~~Ss~alHWLS~ 162 (166)
++..+- -+++++.|++++...|||+..
T Consensus 100 -~d~~~l~~~~~~~fD~V~~~~vl~~~~~ 127 (255)
T PRK11036 100 -CAAQDIAQHLETPVDLILFHAVLEWVAD 127 (255)
T ss_pred -cCHHHHhhhcCCCCCEEEehhHHHhhCC
Confidence 233221 146788999999999999864
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=89.11 E-value=0.82 Score=37.84 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=19.2
Q ss_pred ccccccccCCCceeEEEecccccccc
Q 044676 136 GSFYCRLFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 136 gSFY~rlfP~~Svh~~~Ss~alHWLS 161 (166)
|.+-.--+|++++|++++...+||..
T Consensus 135 ~d~~~l~~~~~~fD~Vi~~~v~~~~~ 160 (272)
T PRK11873 135 GEIEALPVADNSVDVIISNCVINLSP 160 (272)
T ss_pred cchhhCCCCCCceeEEEEcCcccCCC
Confidence 34433336788999999999999864
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=88.78 E-value=0.63 Score=32.29 Aligned_cols=77 Identities=18% Similarity=0.133 Sum_probs=32.1
Q ss_pred EeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCC---ccEEeeeccccccc
Q 044676 65 ADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDR---QYFAAGVAGSFYCR 141 (166)
Q Consensus 65 ADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~---~~f~~gvpgSFY~r 141 (166)
.|+||.+|..+..++... +..++..-|....=....=+.+.... .-............
T Consensus 1 LdiGcG~G~~~~~l~~~~-------------------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------------------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY 61 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------------------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C
T ss_pred CEeCccChHHHHHHHHhC-------------------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc
Confidence 389999999987765432 24566666654332211001111000 11222222222221
Q ss_pred ccCCCceeEEEecccccccc
Q 044676 142 LFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 142 lfP~~Svh~~~Ss~alHWLS 161 (166)
. +.++.|+++++..|||+.
T Consensus 62 ~-~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 62 D-PPESFDLVVASNVLHHLE 80 (99)
T ss_dssp C-C----SEEEEE-TTS--S
T ss_pred c-cccccceehhhhhHhhhh
Confidence 1 227999999999999993
No 44
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=88.66 E-value=1.2 Score=35.56 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=13.9
Q ss_pred EEEeecCCCCcccHHHH
Q 044676 63 TLADLGCSVGPNTVIAM 79 (166)
Q Consensus 63 ~IADlGCS~G~Nsl~~~ 79 (166)
+|.|+||..|..+..+.
T Consensus 2 ~vLDiGcG~G~~~~~la 18 (224)
T smart00828 2 RVLDFGCGYGSDLIDLA 18 (224)
T ss_pred eEEEECCCCCHHHHHHH
Confidence 58999999999766554
No 45
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=86.88 E-value=3.4 Score=34.90 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=45.3
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhh-hCCCCC-ccEEeeeccc
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFR-YLPQDR-QYFAAGVAGS 137 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~-~L~~~~-~~f~~gvpgS 137 (166)
+.-+|.|+||.+|.-++.+. ++ -|+.++..-|+|. --.+.+ .+.... .=-+..++|+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~--------~~-----------~p~~~~~~~D~~~--~~~~a~~~~~~~gl~~rv~~~~~d 207 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAML--------KH-----------FPELDSTILNLPG--AIDLVNENAAEKGVADRMRGIAVD 207 (306)
T ss_pred CCCEEEEeCCchhHHHHHHH--------HH-----------CCCCEEEEEecHH--HHHHHHHHHHhCCccceEEEEecC
Confidence 34689999999997655432 11 1346777778862 222222 111110 0024557789
Q ss_pred ccccccCCCceeEEEeccccc
Q 044676 138 FYCRLFPESSIHFVYSSTALH 158 (166)
Q Consensus 138 FY~rlfP~~Svh~~~Ss~alH 158 (166)
|++.-+|.. |+++.+..+|
T Consensus 208 ~~~~~~~~~--D~v~~~~~lh 226 (306)
T TIGR02716 208 IYKESYPEA--DAVLFCRILY 226 (306)
T ss_pred ccCCCCCCC--CEEEeEhhhh
Confidence 997667764 8888888888
No 46
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=86.57 E-value=1.7 Score=34.44 Aligned_cols=19 Identities=16% Similarity=0.261 Sum_probs=15.5
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|+|+||.+|.-++.+..
T Consensus 18 ~~ilDiGcG~G~~~~~la~ 36 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAK 36 (194)
T ss_pred ceEEEeCCCccHHHHHHHH
Confidence 4899999999998776553
No 47
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=86.04 E-value=0.46 Score=39.42 Aligned_cols=81 Identities=21% Similarity=0.147 Sum_probs=38.8
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhh-CCC--CCcc-EEeeec
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRY-LPQ--DRQY-FAAGVA 135 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~-L~~--~~~~-f~~gvp 135 (166)
...+|.|+||.+|-.++.+. ++. .+..+|+--|+.. +--.+.+. +.. ..++ |+.|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~--------~~~----------~~~~~v~~vD~s~-~ML~~a~~k~~~~~~~~i~~v~~-- 105 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELA--------RRV----------GPNGKVVGVDISP-GMLEVARKKLKREGLQNIEFVQG-- 105 (233)
T ss_dssp S--EEEEET-TTSHHHHHHG--------GGS----------S---EEEEEES-H-HHHHHHHHHHHHTT--SEEEEE---
T ss_pred CCCEEEEeCCChHHHHHHHH--------HHC----------CCccEEEEecCCH-HHHHHHHHHHHhhCCCCeeEEEc--
Confidence 34699999999998766542 111 2344666666422 22222221 111 1122 3333
Q ss_pred ccccccccCCCceeEEEeccccccccc
Q 044676 136 GSFYCRLFPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 136 gSFY~rlfP~~Svh~~~Ss~alHWLS~ 162 (166)
..-.==||++|.|.+.++++||-+..
T Consensus 106 -da~~lp~~d~sfD~v~~~fglrn~~d 131 (233)
T PF01209_consen 106 -DAEDLPFPDNSFDAVTCSFGLRNFPD 131 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG-SS
T ss_pred -CHHHhcCCCCceeEEEHHhhHHhhCC
Confidence 44444489999999999999998764
No 48
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=85.78 E-value=1.9 Score=28.08 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=13.6
Q ss_pred EEEeecCCCCcccHHHH
Q 044676 63 TLADLGCSVGPNTVIAM 79 (166)
Q Consensus 63 ~IADlGCS~G~Nsl~~~ 79 (166)
+|+|+||..|..+..+.
T Consensus 1 ~ildig~G~G~~~~~~~ 17 (107)
T cd02440 1 RVLDLGCGTGALALALA 17 (107)
T ss_pred CeEEEcCCccHHHHHHh
Confidence 48999999998766553
No 49
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=85.48 E-value=6.7 Score=31.19 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=15.7
Q ss_pred CceEEEeecCCCCcccHHH
Q 044676 60 VPFTLADLGCSVGPNTVIA 78 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~ 78 (166)
...+|.|+||.+|..+..+
T Consensus 78 ~~~~VLeiG~GsG~~t~~l 96 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVL 96 (212)
T ss_pred CCCEEEEECCCccHHHHHH
Confidence 3478999999999998743
No 50
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=85.34 E-value=2.9 Score=33.89 Aligned_cols=70 Identities=17% Similarity=0.183 Sum_probs=45.9
Q ss_pred CceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCCccEEeeeccccc
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDRQYFAAGVAGSFY 139 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~~~f~~gvpgSFY 139 (166)
+.-+|+|+|+.+|..++.+ .++ -|.+++..=|||.. ........+ +.-+||.|+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l--------~~~-----------~P~l~~~v~Dlp~v-----~~~~~~~~r--v~~~~gd~f 153 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIAL--------ARA-----------YPNLRATVFDLPEV-----IEQAKEADR--VEFVPGDFF 153 (241)
T ss_dssp TSSEEEEET-TTSHHHHHH--------HHH-----------STTSEEEEEE-HHH-----HCCHHHTTT--EEEEES-TT
T ss_pred CccEEEeccCcchHHHHHH--------HHH-----------CCCCcceeeccHhh-----hhccccccc--cccccccHH
Confidence 3357999999999776543 222 35688999999863 111111223 344889999
Q ss_pred ccccCCCceeEEEeccccc
Q 044676 140 CRLFPESSIHFVYSSTALH 158 (166)
Q Consensus 140 ~rlfP~~Svh~~~Ss~alH 158 (166)
.=+|. -|+++-...||
T Consensus 154 -~~~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 154 -DPLPV--ADVYLLRHVLH 169 (241)
T ss_dssp -TCCSS--ESEEEEESSGG
T ss_pred -hhhcc--ccceeeehhhh
Confidence 77888 89999999998
No 51
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=84.78 E-value=1.8 Score=35.27 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=28.6
Q ss_pred ceEEEeecCCCCcccHHHHH------------HHHHHHHHHHhhcCCCCCCCCCceEEEecCCCC
Q 044676 61 PFTLADLGCSVGPNTVIAMQ------------NFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVL 113 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~------------~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~ 113 (166)
+-++.|+||..|+||+.+.+ ..|+.+.+..... ..+|+...-|+-.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~-------~l~i~~~~~Dl~~ 88 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEE-------GLDIRTRVADLND 88 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHT-------T-TEEEEE-BGCC
T ss_pred CCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhc-------CceeEEEEecchh
Confidence 46899999999999998764 3555555543332 2246666666643
No 52
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=84.58 E-value=2.5 Score=38.12 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.6
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-.++|+||.+|..++.+..
T Consensus 124 p~vLEIGcGsG~~ll~lA~ 142 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAK 142 (390)
T ss_pred CeEEEEcCcccHHHHHHHH
Confidence 4799999999988776553
No 53
>PHA03412 putative methyltransferase; Provisional
Probab=84.26 E-value=0.57 Score=39.64 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=49.3
Q ss_pred ceEEEeecCCCCcccHHHHHHHHH-------------HHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCCCC
Q 044676 61 PFTLADLGCSVGPNTVIAMQNFME-------------AIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQDR 127 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~ii~-------------~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~~ 127 (166)
.-+|+|+||-+|.-++.+...+.. ..-+..+. + .+.+.+...|+-..+++.-|..+=..+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~-n------~~~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKR-I------VPEATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHh-h------ccCCEEEEcchhcccccCCccEEEECC
Confidence 358999999999988876654210 00011111 1 234677778876555544455543223
Q ss_pred ccEE-------------------------eeecccccccccCCCceeEEEec
Q 044676 128 QYFA-------------------------AGVAGSFYCRLFPESSIHFVYSS 154 (166)
Q Consensus 128 ~~f~-------------------------~gvpgSFY~rlfP~~Svh~~~Ss 154 (166)
+|+. ..-||.| ++|+.++.|.+|.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~---ILP~~~~~~~y~~ 171 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF---IIPQMSANFRYSG 171 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE---EeCcccccCcccC
Confidence 3321 2236777 8899999888875
No 54
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=83.29 E-value=4.4 Score=33.77 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.2
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
.-+|.|+||.+|..+..+.
T Consensus 86 ~~~vLDiGcG~G~~~~~l~ 104 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALA 104 (272)
T ss_pred CCeEEEECCcCCHHHHHHH
Confidence 4679999999998776554
No 55
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=82.92 E-value=1.6 Score=37.78 Aligned_cols=76 Identities=18% Similarity=0.103 Sum_probs=42.2
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhC----CCCCccEEeeeccc
Q 044676 62 FTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYL----PQDRQYFAAGVAGS 137 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L----~~~~~~f~~gvpgS 137 (166)
-+|+|+||.+|..++.+.. . + +. +|+--| |+-.+-.-++.+ ....++- -+++.
T Consensus 124 ~~VLDIGCG~G~~~~~la~--------~----g-------~~-~V~GiD-~S~~~l~q~~a~~~~~~~~~~i~--~~~~d 180 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLG--------A----G-------AK-LVVGID-PSQLFLCQFEAVRKLLGNDQRAH--LLPLG 180 (322)
T ss_pred CEEEEeccCCcHHHHHHHH--------c----C-------CC-EEEEEc-CCHHHHHHHHHHHHhcCCCCCeE--EEeCC
Confidence 5899999999998765321 1 1 11 466667 444443333221 1112221 12333
Q ss_pred ccccccCCCceeEEEecccccccc
Q 044676 138 FYCRLFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 138 FY~rlfP~~Svh~~~Ss~alHWLS 161 (166)
+-.--+ +++.|+++|..+|||+.
T Consensus 181 ~e~lp~-~~~FD~V~s~~vl~H~~ 203 (322)
T PRK15068 181 IEQLPA-LKAFDTVFSMGVLYHRR 203 (322)
T ss_pred HHHCCC-cCCcCEEEECChhhccC
Confidence 322112 67889999999998864
No 56
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=81.36 E-value=3.7 Score=35.81 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=17.2
Q ss_pred cCCCceeEEEeccccccccc
Q 044676 143 FPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 143 fP~~Svh~~~Ss~alHWLS~ 162 (166)
+++++.|++++...|||+..
T Consensus 194 ~~~~~FD~Vi~~~vLeHv~d 213 (322)
T PLN02396 194 DEGRKFDAVLSLEVIEHVAN 213 (322)
T ss_pred hccCCCCEEEEhhHHHhcCC
Confidence 56789999999999999864
No 57
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=80.02 E-value=0.53 Score=40.16 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=15.8
Q ss_pred CCCceeEEEeccccccc
Q 044676 144 PESSIHFVYSSTALHWL 160 (166)
Q Consensus 144 P~~Svh~~~Ss~alHWL 160 (166)
+++|||++.+.-|+||.
T Consensus 97 ~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHWF 113 (261)
T ss_pred CCcceeeehhhhhHHhh
Confidence 39999999999999995
No 58
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=75.13 E-value=2.4 Score=36.16 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=27.5
Q ss_pred CchHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCccc
Q 044676 21 HSYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNT 75 (166)
Q Consensus 21 ~sY~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Ns 75 (166)
.-|+.||++|.-- .++.+.|++ ++.+ + .+++--|.|+||-+|--+
T Consensus 21 ~kYt~nsri~~IQ----~em~eRaLE-LLal--p---~~~~~~iLDIGCGsGLSg 65 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQ----AEMAERALE-LLAL--P---GPKSGLILDIGCGSGLSG 65 (270)
T ss_pred hhccccceeeeeh----HHHHHHHHH-HhhC--C---CCCCcEEEEeccCCCcch
Confidence 3599999864322 233444442 2333 2 446788999999998653
No 59
>PRK07402 precorrin-6B methylase; Provisional
Probab=75.03 E-value=16 Score=28.72 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.6
Q ss_pred eEEEeecCCCCcccHHHH
Q 044676 62 FTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~ 79 (166)
-+|.|+||.+|..++.+.
T Consensus 42 ~~VLDiG~G~G~~~~~la 59 (196)
T PRK07402 42 SVLWDIGAGTGTIPVEAG 59 (196)
T ss_pred CEEEEeCCCCCHHHHHHH
Confidence 579999999999988764
No 60
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=74.76 E-value=4.6 Score=31.51 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.6
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~ 80 (166)
.-+|.|+||.+|.-++.+..
T Consensus 32 ~~~vLDiG~G~G~~~~~la~ 51 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAAL 51 (187)
T ss_pred CCEEEEECCcCCHHHHHHHH
Confidence 45799999999999887654
No 61
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=74.07 E-value=5.6 Score=27.91 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=16.1
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||..|..+..+..
T Consensus 21 ~~vldlG~G~G~~~~~l~~ 39 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAAR 39 (124)
T ss_pred CEEEEeCCCCCHHHHHHHH
Confidence 4899999999999887654
No 62
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=73.78 E-value=12 Score=28.83 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=16.1
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|+|+||.+|.-++.+..
T Consensus 33 ~~vLDlG~G~G~i~~~la~ 51 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAK 51 (170)
T ss_dssp CEEEEETSTTSHHHHHHHH
T ss_pred CeEEEecCChHHHHHHHHH
Confidence 4699999999998887654
No 63
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=73.25 E-value=2.9 Score=34.99 Aligned_cols=63 Identities=22% Similarity=0.236 Sum_probs=27.0
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCC-CchHHHhhhCCCCCccEEeeecc
Q 044676 58 SSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVL-NDFNTLFRYLPQDRQYFAAGVAG 136 (166)
Q Consensus 58 ~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~-NDFntLF~~L~~~~~~f~~gvpg 136 (166)
.+...+|||+||.++.-+ +++.+ .+.|+-=||-. ||+-+ .+=++-||
T Consensus 70 ~~~~~viaD~GCGdA~la--------~~~~~--------------~~~V~SfDLva~n~~Vt---------acdia~vP- 117 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA--------KAVPN--------------KHKVHSFDLVAPNPRVT---------ACDIANVP- 117 (219)
T ss_dssp S-TTS-EEEES-TT-HHH--------HH--S-----------------EEEEESS-SSTTEE---------ES-TTS-S-
T ss_pred cCCCEEEEECCCchHHHH--------Hhccc--------------CceEEEeeccCCCCCEE---------EecCccCc-
Confidence 355789999999997554 22221 24455555543 22111 11123445
Q ss_pred cccccccCCCceeEEEeccccc
Q 044676 137 SFYCRLFPESSIHFVYSSTALH 158 (166)
Q Consensus 137 SFY~rlfP~~Svh~~~Ss~alH 158 (166)
++++|||++...-||+
T Consensus 118 ------L~~~svDv~VfcLSLM 133 (219)
T PF05148_consen 118 ------LEDESVDVAVFCLSLM 133 (219)
T ss_dssp --------TT-EEEEEEES---
T ss_pred ------CCCCceeEEEEEhhhh
Confidence 4889999998887775
No 64
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=71.37 E-value=10 Score=30.37 Aligned_cols=19 Identities=16% Similarity=0.142 Sum_probs=16.4
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
.-+|.|+||.+|..++.+.
T Consensus 46 g~~VLDiGcGtG~~al~la 64 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLA 64 (187)
T ss_pred CCeEEEEcCCCCHHHHHHH
Confidence 5789999999999888665
No 65
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=71.17 E-value=6.3 Score=33.08 Aligned_cols=48 Identities=10% Similarity=0.204 Sum_probs=31.9
Q ss_pred eEEEeecCCCCcccHHHHH------------HHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ------------NFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNT 118 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~------------~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFnt 118 (166)
-+|.|+||.+|.-|..+.. ..++.++++.. .+.++++..|...-++..
T Consensus 44 ~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~---------~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 44 DNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA---------EDNLTIIEGDALKVDLSE 103 (272)
T ss_pred CeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc---------cCceEEEEChhhcCCHHH
Confidence 4799999999999988877 34444444331 134777777766555543
No 66
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=70.59 E-value=4.5 Score=31.31 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=16.3
Q ss_pred CCceEEEeecCCCCcccHHHH
Q 044676 59 SVPFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 59 ~~~~~IADlGCS~G~Nsl~~~ 79 (166)
.+..++.|+|||.|+-|-.++
T Consensus 22 ~~~~~vlDlG~aPGGws~~~~ 42 (181)
T PF01728_consen 22 GKGFTVLDLGAAPGGWSQVLL 42 (181)
T ss_dssp TTTEEEEEET-TTSHHHHHHH
T ss_pred ccccEEEEcCCcccceeeeee
Confidence 367999999999999876544
No 67
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=70.03 E-value=6.9 Score=31.37 Aligned_cols=20 Identities=10% Similarity=0.326 Sum_probs=16.6
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~ 80 (166)
.-+|.|+||.+|..+..+..
T Consensus 78 ~~~VLDiG~GsG~~a~~la~ 97 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAE 97 (215)
T ss_pred cCEEEEECCCccHHHHHHHH
Confidence 45899999999999976544
No 68
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=69.43 E-value=5.8 Score=34.77 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=13.9
Q ss_pred EEEeecCCCCcccHHHH
Q 044676 63 TLADLGCSVGPNTVIAM 79 (166)
Q Consensus 63 ~IADlGCS~G~Nsl~~~ 79 (166)
+|+|+||..|..++.+.
T Consensus 199 ~VLDlGCG~G~ls~~la 215 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLA 215 (342)
T ss_pred eEEEeccCcCHHHHHHH
Confidence 69999999998766543
No 69
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=69.26 E-value=6.5 Score=32.69 Aligned_cols=22 Identities=32% Similarity=0.283 Sum_probs=17.7
Q ss_pred CceEEEeecCCCCcccHHHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ 81 (166)
+.-+++|+||++|.-|..+...
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ 96 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK 96 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc
Confidence 3458999999999998876554
No 70
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=69.05 E-value=6.3 Score=33.41 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=17.5
Q ss_pred ceEEEeecCCCCcccHHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~ 81 (166)
+.+|.|+||.+|..++.+...
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~ 142 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYA 142 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHH
Confidence 458999999999998877653
No 71
>PRK04266 fibrillarin; Provisional
Probab=68.94 E-value=3.2 Score=34.30 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=16.8
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|+|+||.+|..++.+...
T Consensus 74 ~~VlD~G~G~G~~~~~la~~ 93 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDI 93 (226)
T ss_pred CEEEEEccCCCHHHHHHHHh
Confidence 58999999999998876543
No 72
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=68.18 E-value=7.9 Score=33.83 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.0
Q ss_pred EEEeecCCCCcccHHHHHHH
Q 044676 63 TLADLGCSVGPNTVIAMQNF 82 (166)
Q Consensus 63 ~IADlGCS~G~Nsl~~~~~i 82 (166)
+|+|+||--|.-.+.+...-
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~ 180 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKS 180 (300)
T ss_pred cEEEeCCCccHHHHHHHHhC
Confidence 89999999999988776544
No 73
>PTZ00146 fibrillarin; Provisional
Probab=62.49 E-value=5.5 Score=34.61 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=17.0
Q ss_pred eEEEeecCCCCcccHHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQNF 82 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~i 82 (166)
.+|+|+||++|..|..+.+.+
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiV 154 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLV 154 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHh
Confidence 589999999999887665443
No 74
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=62.35 E-value=4.1 Score=35.67 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=36.7
Q ss_pred eEEEeecCCCCcccHHHHHH--------------HHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHh
Q 044676 62 FTLADLGCSVGPNTVIAMQN--------------FMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLF 120 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~--------------ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF 120 (166)
-.|+|+||.+|.-|+.++.. .|+...+.+....- ..-|.|.++|+-+-=|+..-
T Consensus 150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----~g~i~v~~~~me~d~~~~~~ 217 (328)
T KOG2904|consen 150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----SGRIEVIHNIMESDASDEHP 217 (328)
T ss_pred ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----cCceEEEecccccccccccc
Confidence 47999999999999988753 34444444443221 34689999988776666553
No 75
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=62.20 E-value=36 Score=29.50 Aligned_cols=57 Identities=23% Similarity=0.414 Sum_probs=39.0
Q ss_pred ceEEEeecCCCCcccHHHHHHH-------------HHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCC
Q 044676 61 PFTLADLGCSVGPNTVIAMQNF-------------MEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLP 124 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~~i-------------i~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~ 124 (166)
-.+|.|+||.-|..++.++... .+..+++..+.+. +..++|.+-|. +||+.-|..+-
T Consensus 73 G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~--rd~~e~fDrIv 142 (283)
T COG2230 73 GMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDY--RDFEEPFDRIV 142 (283)
T ss_pred CCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEeccc--cccccccceee
Confidence 3889999999999999988875 2333444444432 23589998886 45655566654
No 76
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=61.93 E-value=5.7 Score=31.42 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=15.8
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
.-+|.|+||.+|..++.+.
T Consensus 43 ~~~vLDiGcGtG~~s~~la 61 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLA 61 (181)
T ss_pred CCeEEEecCCCCccHHHHH
Confidence 4689999999998888653
No 77
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=61.39 E-value=11 Score=30.08 Aligned_cols=19 Identities=11% Similarity=0.401 Sum_probs=15.7
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||.+|..+..+..
T Consensus 74 ~~VLDiG~GsG~~~~~la~ 92 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAE 92 (205)
T ss_pred CEEEEECcCccHHHHHHHH
Confidence 5799999999998866543
No 78
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=61.07 E-value=16 Score=27.45 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=19.3
Q ss_pred CCCceEEEeecCCCCcccHHHHH
Q 044676 58 SSVPFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 58 ~~~~~~IADlGCS~G~Nsl~~~~ 80 (166)
..+..+|.|+||-.|.-++.+..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH
Confidence 35679999999999999887665
No 79
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=60.30 E-value=4.8 Score=35.08 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=15.6
Q ss_pred CCCceEEEeecCCCCcccH
Q 044676 58 SSVPFTLADLGCSVGPNTV 76 (166)
Q Consensus 58 ~~~~~~IADlGCS~G~Nsl 76 (166)
-+..+.|||+||..+.-+.
T Consensus 178 r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred CcCceEEEecccchhhhhh
Confidence 3678999999999987654
No 80
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=58.69 E-value=27 Score=30.65 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCccc
Q 044676 34 ADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNT 75 (166)
Q Consensus 34 i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Ns 75 (166)
+..---|+...+-..+.-. ........+|.||||.-|+=.
T Consensus 38 lR~fNNwvKs~LI~~~~~~--~~~~~~~~~VLDl~CGkGGDL 77 (331)
T PF03291_consen 38 LRNFNNWVKSVLIQKYAKK--VKQNRPGLTVLDLCCGKGGDL 77 (331)
T ss_dssp HHHHHHHHHHHHHHHHCHC--CCCTTTT-EEEEET-TTTTTH
T ss_pred HHHHhHHHHHHHHHHHHHh--hhccCCCCeEEEecCCCchhH
Confidence 4444445555554433211 101226799999999999853
No 81
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=58.31 E-value=14 Score=29.82 Aligned_cols=19 Identities=11% Similarity=0.345 Sum_probs=15.9
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
.-+|.|+||.+|..|..+.
T Consensus 77 g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred cCEEEEECCcccHHHHHHH
Confidence 3689999999999996554
No 82
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=57.17 E-value=6.2 Score=32.53 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=36.8
Q ss_pred eEEEeecCCCCcccHHHH-------------HHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhC
Q 044676 62 FTLADLGCSVGPNTVIAM-------------QNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYL 123 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~-------------~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L 123 (166)
-+|+|+||-+|.-++.+. ...+++.++.+.+. .-.+.++-.|. -||+.-|.++
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------~g~v~f~~~dv--~~~~~~~dtv 112 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------LGDVEFVVADV--SDFRGKFDTV 112 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------CCceEEEEcch--hhcCCccceE
Confidence 469999999999888653 35677777776543 23577777775 4666666653
No 83
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=56.31 E-value=8.5 Score=30.04 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=14.9
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
.-+|+|+||.+|.-+..+.
T Consensus 33 g~~VLDiG~GtG~~~~~l~ 51 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAV 51 (188)
T ss_pred CCEEEEecCCCCHHHHHHH
Confidence 3589999999998665544
No 84
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=56.07 E-value=14 Score=31.09 Aligned_cols=20 Identities=20% Similarity=0.286 Sum_probs=16.7
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
.+|.|+||.+|.-++.+...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~ 135 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE 135 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH
Confidence 58999999999988876653
No 85
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=55.87 E-value=13 Score=30.46 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.8
Q ss_pred CceEEEeecCCCCcccHHHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ 81 (166)
+..+|.|+||.+|..++.+...
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~ 129 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKE 129 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHH
Confidence 3568999999999988876644
No 86
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=54.77 E-value=18 Score=31.42 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=15.0
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
.-+|+|+||.+|..++.++
T Consensus 122 g~~VLDvGCG~G~~~~~~~ 140 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRML 140 (314)
T ss_pred CCEEEEeccCCcHHHHHHH
Confidence 3589999999999766543
No 87
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=54.69 E-value=16 Score=30.53 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.6
Q ss_pred CceEEEeecCCCCcccHHHHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNF 82 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~i 82 (166)
.--+|.|.|||-|.=|-.+++.+
T Consensus 69 p~~~VlD~G~APGsWsQVavqr~ 91 (232)
T KOG4589|consen 69 PEDTVLDCGAAPGSWSQVAVQRV 91 (232)
T ss_pred CCCEEEEccCCCChHHHHHHHhh
Confidence 35789999999998776655443
No 88
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=53.96 E-value=16 Score=30.32 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=16.9
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~ 80 (166)
..+|.|+||.+|.-++.+..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred CCEEEEecCchHHHHHHHHH
Confidence 45899999999999987664
No 89
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=53.43 E-value=7.7 Score=29.98 Aligned_cols=19 Identities=11% Similarity=0.158 Sum_probs=16.0
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|+|+||.+|..++.+..
T Consensus 21 ~~vLdlG~G~G~~~~~l~~ 39 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKG 39 (179)
T ss_pred CeEEEeCCChhHHHHHHHh
Confidence 4699999999998887664
No 90
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=53.28 E-value=16 Score=31.16 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=24.8
Q ss_pred HHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHH
Q 044676 41 IVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 41 l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ 81 (166)
|++|+++ ..+ ..+--++.|+|.|+|+-|-.+++.
T Consensus 67 L~~ale~-F~l------~~k~kv~LDiGsSTGGFTd~lLq~ 100 (245)
T COG1189 67 LEKALEE-FEL------DVKGKVVLDIGSSTGGFTDVLLQR 100 (245)
T ss_pred HHHHHHh-cCc------CCCCCEEEEecCCCccHHHHHHHc
Confidence 5666655 333 345578999999999999887765
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=52.49 E-value=13 Score=29.68 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=16.6
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~ 80 (166)
..+|.|+||.+|..++.+..
T Consensus 88 ~~~ilDig~G~G~~~~~l~~ 107 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAK 107 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHH
Confidence 45899999999988877664
No 92
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=51.65 E-value=19 Score=31.04 Aligned_cols=20 Identities=15% Similarity=0.105 Sum_probs=16.7
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
.+|.|+||.+|..++.+...
T Consensus 135 ~~VLDlG~GsG~iai~la~~ 154 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA 154 (307)
T ss_pred CEEEEEechhhHHHHHHHHH
Confidence 57999999999988876543
No 93
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=50.86 E-value=20 Score=30.59 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.6
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||.+|..++.+..
T Consensus 175 ~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CEEEEccCCCCHHHHHHHh
Confidence 5799999999999987764
No 94
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=49.43 E-value=11 Score=28.98 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.6
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|.|+||..|..+..+.+.
T Consensus 15 ~~vLEiG~G~G~lt~~l~~~ 34 (169)
T smart00650 15 DTVLEIGPGKGALTEELLER 34 (169)
T ss_pred CEEEEECCCccHHHHHHHhc
Confidence 47999999999999988764
No 95
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=49.40 E-value=12 Score=29.49 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=16.4
Q ss_pred CceEEEeecCCCCcccHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~ 79 (166)
...+|.|+||.+|..+..+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~ 64 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA 64 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH
Confidence 46789999999998877654
No 96
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=49.36 E-value=88 Score=25.57 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=33.6
Q ss_pred eEEEeecCCCCcccHHHH--------------HHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCC
Q 044676 62 FTLADLGCSVGPNTVIAM--------------QNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVL 113 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~--------------~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~ 113 (166)
-++.|.||-+|.-++.++ .+.++.+++.+.+-+ .+-++|.--|=|.
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg------~~n~~vv~g~Ap~ 95 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG------VDNLEVVEGDAPE 95 (187)
T ss_pred CEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC------CCcEEEEeccchH
Confidence 489999999999999888 346777777776654 2356776666553
No 97
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=49.20 E-value=25 Score=30.37 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=14.9
Q ss_pred EEEeecCCCCcccHHHHH
Q 044676 63 TLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 63 ~IADlGCS~G~Nsl~~~~ 80 (166)
+|.|+||-+|--++.+..
T Consensus 164 ~vLDvG~GSGILaiaA~k 181 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAK 181 (295)
T ss_dssp EEEEES-TTSHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHHHH
Confidence 899999999999887764
No 98
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=48.99 E-value=54 Score=28.87 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=15.3
Q ss_pred CCCceEEEeecCCCCcc
Q 044676 58 SSVPFTLADLGCSVGPN 74 (166)
Q Consensus 58 ~~~~~~IADlGCS~G~N 74 (166)
..++++|.|+-|-+|+-
T Consensus 133 ~g~pvrIlDIAaG~GRY 149 (311)
T PF12147_consen 133 QGRPVRILDIAAGHGRY 149 (311)
T ss_pred cCCceEEEEeccCCcHH
Confidence 57899999999999975
No 99
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=48.77 E-value=48 Score=30.31 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=28.8
Q ss_pred eEEEeecCCCCcccHHHHH--------------HHHHHHHHHHhhcCCCCCCCCCceEEEecCCCC
Q 044676 62 FTLADLGCSVGPNTVIAMQ--------------NFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVL 113 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~--------------~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~ 113 (166)
-+|.|+||.+|..++.+.. ..++..++.....+ ..+.+...|+..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g-------~rV~fi~gDl~e 311 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG-------ARVEFAHGSWFD 311 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEcchhc
Confidence 3899999999999886653 34555555443221 246777777643
No 100
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=48.73 E-value=69 Score=26.51 Aligned_cols=20 Identities=15% Similarity=0.079 Sum_probs=17.7
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|.|+||..|.-|..+...
T Consensus 31 ~~VLEIG~G~G~lt~~L~~~ 50 (258)
T PRK14896 31 DPVLEIGPGKGALTDELAKR 50 (258)
T ss_pred CeEEEEeCccCHHHHHHHHh
Confidence 57999999999999988874
No 101
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=47.85 E-value=35 Score=28.24 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=41.4
Q ss_pred CCCceEEEeecCCCCcccHHHH------------HHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhhhCCC
Q 044676 58 SSVPFTLADLGCSVGPNTVIAM------------QNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFRYLPQ 125 (166)
Q Consensus 58 ~~~~~~IADlGCS~G~Nsl~~~------------~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~ 125 (166)
.+..-++.|+|||.|-.|..+. ...|+.-++++.. .+.+++..-|+|.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--------~~~V~~~~~dvp~------------ 100 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--------LPHVEWIQADVPE------------ 100 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT------------
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--------CCCeEEEECcCCC------------
Confidence 3556779999999999998764 5667777776642 3467888888753
Q ss_pred CCccEEeeecccccccccCCCceeEEEecccccccc
Q 044676 126 DRQYFAAGVAGSFYCRLFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 126 ~~~~f~~gvpgSFY~rlfP~~Svh~~~Ss~alHWLS 161 (166)
..|....|+++-+=-+++|+
T Consensus 101 ----------------~~P~~~FDLIV~SEVlYYL~ 120 (201)
T PF05401_consen 101 ----------------FWPEGRFDLIVLSEVLYYLD 120 (201)
T ss_dssp -------------------SS-EEEEEEES-GGGSS
T ss_pred ----------------CCCCCCeeEEEEehHhHcCC
Confidence 13556666666666666665
No 102
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=47.62 E-value=11 Score=31.91 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=14.2
Q ss_pred eEEEeecCCCCcccHHH
Q 044676 62 FTLADLGCSVGPNTVIA 78 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~ 78 (166)
-+|.|+||.+|..++.+
T Consensus 161 ~~VLDvGcGsG~lai~a 177 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAA 177 (288)
T ss_pred CEEEEeCCChhHHHHHH
Confidence 57999999999877654
No 103
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=47.28 E-value=9.2 Score=31.51 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=14.4
Q ss_pred eEEEeecCCCCcccHHHH
Q 044676 62 FTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~ 79 (166)
-+|.|+||.+|..++.+.
T Consensus 121 ~~VLDiGcGsG~l~i~~~ 138 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAA 138 (250)
T ss_pred CEEEEeCCcHHHHHHHHH
Confidence 579999999998776543
No 104
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=46.74 E-value=21 Score=28.86 Aligned_cols=19 Identities=16% Similarity=0.002 Sum_probs=16.2
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||.+|.-++.+++
T Consensus 55 ~~vLDl~~GsG~l~l~~ls 73 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALS 73 (199)
T ss_pred CEEEEcCCCccHHHHHHHH
Confidence 4899999999999987654
No 105
>PRK04148 hypothetical protein; Provisional
Probab=46.30 E-value=76 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=27.9
Q ss_pred CceEEEeecCCCCc-ccHHHHH------------HHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchH
Q 044676 60 VPFTLADLGCSVGP-NTVIAMQ------------NFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFN 117 (166)
Q Consensus 60 ~~~~IADlGCS~G~-Nsl~~~~------------~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFn 117 (166)
+..+|+|.||..|. -+..+.+ ..++..++ .-++++..|+-..|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-------------~~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKK-------------LGLNAFVDDLFNPNLE 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-------------hCCeEEECcCCCCCHH
Confidence 34789999999986 3333332 11111111 1368899999888876
No 106
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=45.98 E-value=61 Score=28.32 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=19.9
Q ss_pred CCceEEEeecCCCCcccHHHHHHHH
Q 044676 59 SVPFTLADLGCSVGPNTVIAMQNFM 83 (166)
Q Consensus 59 ~~~~~IADlGCS~G~Nsl~~~~~ii 83 (166)
+...+|.||||.+|.-+-.+++.+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~ 99 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALE 99 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHH
Confidence 3345899999999999888777664
No 107
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=45.61 E-value=13 Score=33.21 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=15.5
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||.+|.-++.+..
T Consensus 230 ~~VLDLGCGtGvi~i~la~ 248 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLD 248 (378)
T ss_pred CeEEEEeccccHHHHHHHH
Confidence 3899999999998776554
No 108
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=45.51 E-value=11 Score=30.95 Aligned_cols=12 Identities=42% Similarity=0.778 Sum_probs=10.9
Q ss_pred eEEEeecCCCCc
Q 044676 62 FTLADLGCSVGP 73 (166)
Q Consensus 62 ~~IADlGCS~G~ 73 (166)
-+|.|+||.+|.
T Consensus 15 srVLDLGCGdG~ 26 (193)
T PF07021_consen 15 SRVLDLGCGDGE 26 (193)
T ss_pred CEEEecCCCchH
Confidence 679999999986
No 109
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=45.36 E-value=24 Score=30.77 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.7
Q ss_pred CceEEEeecCCCCcccHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~ 79 (166)
+.-++.|+||-||--++...
T Consensus 162 ~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred CCCEEEEecCChhHHHHHHH
Confidence 35789999999999888765
No 110
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=44.27 E-value=48 Score=29.73 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=17.2
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|.|+||++|.-|+.+...
T Consensus 252 ~~VLDlgaG~G~~t~~la~~ 271 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAEL 271 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999877654
No 111
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=44.09 E-value=21 Score=24.96 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.5
Q ss_pred eEEEeecCCCCcccHHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQNF 82 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~i 82 (166)
.+|.|.||-+|.-.+.+....
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~ 22 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG 22 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC
T ss_pred CEEEEcCcchHHHHHHHHHHC
Confidence 579999999999888777554
No 112
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=43.58 E-value=46 Score=30.01 Aligned_cols=20 Identities=15% Similarity=0.140 Sum_probs=16.8
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|.|+||+.|.-|+.+...
T Consensus 239 ~~VLD~cagpGgkt~~la~~ 258 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAEL 258 (431)
T ss_pred CEEEEeCCCccHHHHHHHHH
Confidence 47999999999999876654
No 113
>PRK14968 putative methyltransferase; Provisional
Probab=43.53 E-value=15 Score=27.81 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=15.2
Q ss_pred eEEEeecCCCCcccHHHH
Q 044676 62 FTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~ 79 (166)
-+|.|+||.+|..++.+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~ 42 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAA 42 (188)
T ss_pred CEEEEEccccCHHHHHHH
Confidence 479999999999877654
No 114
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=43.30 E-value=16 Score=31.82 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=17.4
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~ 80 (166)
..+|.|+||.+|..++.+..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~ 164 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLAL 164 (315)
T ss_pred CCEEEEecCCCCHHHHHHHH
Confidence 46899999999999987765
No 115
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=42.26 E-value=39 Score=26.58 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=15.7
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
.-+|+|+||.+|.-++.+.
T Consensus 41 ~~~vlDlG~GtG~~s~~~a 59 (198)
T PRK00377 41 GDMILDIGCGTGSVTVEAS 59 (198)
T ss_pred cCEEEEeCCcCCHHHHHHH
Confidence 4589999999998888653
No 116
>PRK14967 putative methyltransferase; Provisional
Probab=42.24 E-value=12 Score=30.09 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=15.7
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||.+|..++.+..
T Consensus 38 ~~vLDlGcG~G~~~~~la~ 56 (223)
T PRK14967 38 RRVLDLCTGSGALAVAAAA 56 (223)
T ss_pred CeEEEecCCHHHHHHHHHH
Confidence 5799999999998876543
No 117
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=42.06 E-value=15 Score=32.42 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.2
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~ 80 (166)
--+|+|+||..|.-++.+..
T Consensus 116 gk~VLDIGC~nGY~~frM~~ 135 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLG 135 (315)
T ss_pred CCEEEEecCCCcHHHHHHhh
Confidence 35899999999998876553
No 118
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=42.04 E-value=87 Score=26.85 Aligned_cols=50 Identities=20% Similarity=0.310 Sum_probs=34.1
Q ss_pred eEEEeecCCCCcccHHHHHH------------HHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCch
Q 044676 62 FTLADLGCSVGPNTVIAMQN------------FMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDF 116 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~------------ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDF 116 (166)
-+|.|+||..|.-|..++.. .++.++++....+. ...++++..|.-.-|+
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-----~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-----ASKLEVIEGDALKTEF 99 (294)
T ss_pred CEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-----CCcEEEEECCHhhhcc
Confidence 47999999999999887753 45666665533210 2357888888765554
No 119
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=41.52 E-value=33 Score=29.92 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=16.4
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||.+|..++.+..
T Consensus 82 ~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CEEEEEeCCccHHHHHHHH
Confidence 5799999999999987664
No 120
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=41.16 E-value=30 Score=31.00 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=17.1
Q ss_pred CceEEEeecCCCCcccHHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~ 80 (166)
.-.++.|+|||.|+-|-.+++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~ 231 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVR 231 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHH
Confidence 457899999999999876553
No 121
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=41.13 E-value=47 Score=28.14 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=29.2
Q ss_pred eEEEeecCCCCcccHHHHHH-------------HHHHHHHHHhhcCCCCCCCCCceEEEecCC
Q 044676 62 FTLADLGCSVGPNTVIAMQN-------------FMEAIKLKYQDQGPAHSQILPQFQVFFNDQ 111 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~-------------ii~~i~~~~~~~~~~~~~~~~eiqv~~nDL 111 (166)
-+|.|+||.-|..++.+... -.+.++++....+- +..++|.+-|-
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v~v~~~D~ 121 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----EDRVEVRLQDY 121 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----SSTEEEEES-G
T ss_pred CEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEeec
Confidence 68999999999999988877 23444555544432 23578888774
No 122
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=41.02 E-value=37 Score=27.93 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.2
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~ 80 (166)
.-+|.|+||..|.-|..+..
T Consensus 30 ~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 30 GDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred cCEEEEeCCCCCHHHHHHHH
Confidence 35799999999999988765
No 123
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=40.83 E-value=18 Score=27.67 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.3
Q ss_pred cCCCceeEEEeccccccccc
Q 044676 143 FPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 143 fP~~Svh~~~Ss~alHWLS~ 162 (166)
+++++.|++++.+++||+..
T Consensus 40 ~~~~~fD~v~~~~~l~~~~d 59 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNVVD 59 (160)
T ss_pred CCCCCeeEEEecchhhcCCC
Confidence 57889999999999999753
No 124
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=40.46 E-value=18 Score=29.39 Aligned_cols=20 Identities=5% Similarity=-0.074 Sum_probs=17.4
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|.|+||-.|+|++.+.+.
T Consensus 36 ~rvLd~GCG~G~da~~LA~~ 55 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQ 55 (213)
T ss_pred CeEEEeCCCchhHHHHHHhC
Confidence 48999999999999987654
No 125
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=39.23 E-value=29 Score=31.76 Aligned_cols=74 Identities=23% Similarity=0.319 Sum_probs=38.4
Q ss_pred CceEEEeecCCCCcccHHHHHHH------------------HHHHHHHHhhcCCCCCCCCCceEEEecCCCCCchHHHhh
Q 044676 60 VPFTLADLGCSVGPNTVIAMQNF------------------MEAIKLKYQDQGPAHSQILPQFQVFFNDQVLNDFNTLFR 121 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~i------------------i~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDFntLF~ 121 (166)
+..+|.|.||..|+-+..++... +.+++++....+- ...|+|+..|.-. +.
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~--v~---- 254 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMRE--VE---- 254 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTT--SC----
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccC--CC----
Confidence 46899999999999988777653 3333333222221 2358898888411 10
Q ss_pred hCCCCCccEEeeecccc-cccccCC
Q 044676 122 YLPQDRQYFAAGVAGSF-YCRLFPE 145 (166)
Q Consensus 122 ~L~~~~~~f~~gvpgSF-Y~rlfP~ 145 (166)
+|..-.+-++=.=||| ++.+.|+
T Consensus 255 -lpekvDIIVSElLGsfg~nEl~pE 278 (448)
T PF05185_consen 255 -LPEKVDIIVSELLGSFGDNELSPE 278 (448)
T ss_dssp -HSS-EEEEEE---BTTBTTTSHHH
T ss_pred -CCCceeEEEEeccCCccccccCHH
Confidence 1112356666666777 3445554
No 126
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=38.75 E-value=58 Score=25.90 Aligned_cols=19 Identities=21% Similarity=0.258 Sum_probs=15.0
Q ss_pred ceEEEeecCCCCcccHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~ 79 (166)
..+|.|+||..|..+..+.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~ 67 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMA 67 (233)
T ss_pred CCeEEEeCCCCCHHHHHHH
Confidence 4679999999998766543
No 127
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=38.60 E-value=55 Score=29.06 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=16.2
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||..|..++.+..
T Consensus 169 ~rVLDIGcG~G~~a~~la~ 187 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAE 187 (383)
T ss_pred CEEEEeCCCccHHHHHHHH
Confidence 5899999999999886654
No 128
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=37.30 E-value=42 Score=26.66 Aligned_cols=20 Identities=20% Similarity=0.047 Sum_probs=17.5
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-++.|++|.+|.-++.+++.
T Consensus 51 ~~vLDLfaGsG~lglea~sr 70 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSR 70 (189)
T ss_pred CEEEEecCCCcHHHHHHHhC
Confidence 57999999999999988863
No 129
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=36.84 E-value=46 Score=27.11 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=17.3
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|.|.||..|.|++.+.+.
T Consensus 39 ~rvL~~gCG~G~da~~LA~~ 58 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQ 58 (218)
T ss_pred CeEEEeCCCChHhHHHHHhC
Confidence 58999999999999977654
No 130
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=36.48 E-value=47 Score=28.58 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=61.0
Q ss_pred hHHhhHHHHHHHHH--------HHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcC
Q 044676 23 YSKNSFYQKQFADL--------VKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQG 94 (166)
Q Consensus 23 Y~~nS~~Q~~~i~~--------~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~ 94 (166)
|.+++..+....-+ -..||.+...+++..+ ...+-+|-..||.-|.+.+.++...
T Consensus 31 y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~-----~~~~~~ilEvGCGvGNtvfPll~~~------------ 93 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD-----EKSAETILEVGCGVGNTVFPLLKTS------------ 93 (264)
T ss_pred hhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc-----ccChhhheeeccCCCcccchhhhcC------------
Confidence 55555554444322 4678888888766532 2223489999999987777654211
Q ss_pred CCCCCCCCceEEEecCCCCCchHHHhhhCCCC-Cc--cEEeeecccccccccCCCceeEEEeccc
Q 044676 95 PAHSQILPQFQVFFNDQVLNDFNTLFRYLPQD-RQ--YFAAGVAGSFYCRLFPESSIHFVYSSTA 156 (166)
Q Consensus 95 ~~~~~~~~eiqv~~nDLP~NDFntLF~~L~~~-~~--~f~~gvpgSFY~rlfP~~Svh~~~Ss~a 156 (166)
+ .+.+.||..|...+--+-+=++-.-. .. -|+.-.-++=-..-++.+|||++..-+.
T Consensus 94 -~----n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 94 -P----NNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred -C----CCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 1 33478887776554333222221111 11 1333332222455667788888765554
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=36.05 E-value=60 Score=29.14 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.5
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||.+|..++.+..
T Consensus 299 ~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CEEEEEeccCCHHHHHHHH
Confidence 5799999999999987764
No 132
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=35.78 E-value=65 Score=26.76 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHH
Q 044676 38 KDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFM 83 (166)
Q Consensus 38 ~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii 83 (166)
++.||++.+++- ...+-..+++||.+|--|-.+.+.+.
T Consensus 29 lDaLekd~~eL~--------~~~~~i~lEIG~GSGvvstfL~~~i~ 66 (209)
T KOG3191|consen 29 LDALEKDAAELK--------GHNPEICLEIGCGSGVVSTFLASVIG 66 (209)
T ss_pred HHHHHHHHHHHh--------hcCceeEEEecCCcchHHHHHHHhcC
Confidence 566666665522 12267789999999998888877776
No 133
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=34.91 E-value=51 Score=23.29 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=27.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCC
Q 044676 24 SKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSV 71 (166)
Q Consensus 24 ~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~ 71 (166)
++.+.+.+..++.+...+.++|.+.+. ....+.|.+||--.
T Consensus 12 a~~~~~s~~~v~~vv~~~~~~i~~~L~-------~g~~V~l~gfG~F~ 52 (96)
T TIGR00987 12 FDELGLSKREAKELVELFFEEIRRALE-------NGEQVKLSGFGNFD 52 (96)
T ss_pred HHHhCcCHHHHHHHHHHHHHHHHHHHH-------cCCeEEecCCEEEE
Confidence 344445566667777777777776553 35579999999653
No 134
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=34.51 E-value=1.3e+02 Score=24.57 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=23.6
Q ss_pred eEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCC
Q 044676 62 FTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQV 112 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP 112 (166)
..+.|.|+...++--. +.++|.+.+.+. .|+|-|+.-|+-
T Consensus 4 ~~~gD~g~~~~~~~~~----~~~~~~~~~~~~-------~~dfvv~~GD~~ 43 (277)
T cd07378 4 LALGDWGGGGTAGQKA----VAKAMAKVAAEL-------GPDFILSLGDNF 43 (277)
T ss_pred EEEeecCCCCCHHHHH----HHHHHHHHHHhc-------CCCEEEeCCCcc
Confidence 6789999883233323 333333333221 468999999984
No 135
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=33.00 E-value=29 Score=31.09 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=16.9
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|.|+||++|.-|+.+...
T Consensus 246 ~~VLDlgaG~G~~t~~la~~ 265 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILEL 265 (427)
T ss_pred CEEEEeCCCCChHHHHHHHH
Confidence 57999999999999877654
No 136
>PHA02734 coat protein; Provisional
Probab=32.95 E-value=29 Score=26.89 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=28.1
Q ss_pred cccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCc
Q 044676 73 PNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLND 115 (166)
Q Consensus 73 ~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~ND 115 (166)
.|+-.+|.+||++|++...-......- -.|.+|||+..|.|-
T Consensus 49 e~~k~aIHeiIK~IreA~kp~rn~g~g-fkeawvyfsqvpena 90 (149)
T PHA02734 49 ANAKAAIHAIIKMIKDAMKPLRNKGKG-FKEAWVYFSQVPENA 90 (149)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCc-hhHHHHhhhcCcccC
Confidence 466789999999999865321000000 247889999999884
No 137
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=32.64 E-value=23 Score=25.76 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=14.5
Q ss_pred EEEeecCCCCcccHHHHH
Q 044676 63 TLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 63 ~IADlGCS~G~Nsl~~~~ 80 (166)
+|.|+||..|.-++.+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~ 18 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFAR 18 (143)
T ss_pred CEEEccCCccHHHHHHHH
Confidence 489999999988776553
No 138
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=32.42 E-value=65 Score=21.76 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=25.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCC
Q 044676 25 KNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSV 71 (166)
Q Consensus 25 ~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~ 71 (166)
+++.+.+..+......+.+.|.+.+. ....+.|-|||.=.
T Consensus 11 ~~~~~~~~~v~~vl~~~~~~i~~~L~-------~g~~V~l~~~G~F~ 50 (87)
T cd00591 11 EKTGLSKKDAEAAVDAFLDVITEALA-------KGEKVELPGFGTFE 50 (87)
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHh-------CCCeEEEeCCEEEE
Confidence 34445556666667777777766553 45578999998644
No 139
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=32.00 E-value=29 Score=28.88 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=16.7
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|.|+||+.|.-|+.+...
T Consensus 73 ~~VLDl~ag~G~kt~~la~~ 92 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISAL 92 (264)
T ss_pred CEEEEECCCchHHHHHHHHH
Confidence 57999999999999876543
No 140
>PLN03075 nicotianamine synthase; Provisional
Probab=31.24 E-value=36 Score=29.59 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=15.6
Q ss_pred CceEEEeecCCCCcccHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~ 79 (166)
.+=+|+|+||..|+-|..++
T Consensus 123 ~p~~VldIGcGpgpltaiil 142 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVL 142 (296)
T ss_pred CCCEEEEECCCCcHHHHHHH
Confidence 45679999999988766544
No 141
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=31.10 E-value=35 Score=30.69 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.9
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||++|..|+.+..
T Consensus 252 ~~VLDlgaG~G~kt~~la~ 270 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAE 270 (445)
T ss_pred CEEEEECCCCCHHHHHHHH
Confidence 5799999999999876654
No 142
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=30.93 E-value=39 Score=30.33 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=16.3
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||+.|..|+.+..
T Consensus 254 ~~VLDl~ag~G~kt~~la~ 272 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAE 272 (434)
T ss_pred CEEEEeCCCCchhHHHHHH
Confidence 5799999999999987654
No 143
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=29.41 E-value=30 Score=29.42 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=19.8
Q ss_pred CCceEEEeecCCCCcccHHHHHH
Q 044676 59 SVPFTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 59 ~~~~~IADlGCS~G~Nsl~~~~~ 81 (166)
+..-+|+|+||-.|.-+|.+.+.
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r 65 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQR 65 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhcc
Confidence 34788999999999999988776
No 144
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=29.08 E-value=94 Score=25.67 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=17.9
Q ss_pred CCceEEEeecCCCCcccHHHHHHH
Q 044676 59 SVPFTLADLGCSVGPNTVIAMQNF 82 (166)
Q Consensus 59 ~~~~~IADlGCS~G~Nsl~~~~~i 82 (166)
..-.+|.|||||-|.=|-.+...+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~ 67 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKL 67 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHh
Confidence 445889999999999876554433
No 145
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=28.73 E-value=34 Score=31.57 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=16.8
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~ 80 (166)
..+|.|+||.+|..++.+..
T Consensus 139 ~~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC 158 (506)
T ss_pred CCEEEEccCchhHHHHHHHH
Confidence 46899999999999886654
No 146
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=28.70 E-value=28 Score=29.65 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.1
Q ss_pred EEEeecCCCCcccHHHHHHHH
Q 044676 63 TLADLGCSVGPNTVIAMQNFM 83 (166)
Q Consensus 63 ~IADlGCS~G~Nsl~~~~~ii 83 (166)
+|.|+||.||.-++.+....-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~ 133 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP 133 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc
Confidence 899999999999988776654
No 147
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.49 E-value=1.7e+02 Score=24.85 Aligned_cols=58 Identities=12% Similarity=0.043 Sum_probs=33.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHH
Q 044676 25 KNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKL 88 (166)
Q Consensus 25 ~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~ 88 (166)
.+........+.++..+.+.|+..-..+ ..-.+.+.|+||+. ..+...+.++++.+.+
T Consensus 101 h~~~~~~~t~~e~l~~~~~~i~~a~~~G-----~~v~~~~~d~~~~~-r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 101 HCTEQLRKTPEEHFADIREVIEYAIKNG-----IEVNIYLEDWSNGM-RDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHhCC-----CEEEEEEEeCCCCC-cCCHHHHHHHHHHHHH
Confidence 3333333444555555555555433211 23368899999987 5667777777776654
No 148
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=28.05 E-value=72 Score=20.45 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=25.0
Q ss_pred CcccHHHHHHHHHHHHHHHhhc-CCCCCCCCCceEEEecCCCCCch
Q 044676 72 GPNTVIAMQNFMEAIKLKYQDQ-GPAHSQILPQFQVFFNDQVLNDF 116 (166)
Q Consensus 72 G~Nsl~~~~~ii~~i~~~~~~~-~~~~~~~~~eiqv~~nDLP~NDF 116 (166)
|. |-.--.++++.|.+...+. +.+ +..+.|+++|.|..+|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~~p----~~~v~V~i~ev~~~~~ 51 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAKAP----KEAIHVFINDMPEGTY 51 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhCcC----cceEEEEEEEeChhhe
Confidence 55 6666666666666654432 111 4479999999886543
No 149
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=28.01 E-value=2e+02 Score=25.51 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=33.8
Q ss_pred CCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCCCCc
Q 044676 58 SSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQVLND 115 (166)
Q Consensus 58 ~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP~ND 115 (166)
..+.+.|.|||...|- -+-.+|+++.++. .+ +|.+.+.--+.|...
T Consensus 108 g~~~vHIID~~i~~G~----QW~~LiqaLa~R~--~g------pp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 108 GERRVHIIDFGIGFGV----QWPSLIQALASRP--GG------PPSLRITGIGPPNSG 153 (374)
T ss_pred cCcceEEEeccCCcch----HHHHHHHHHhcCC--CC------CCeEEEEeccCCCCC
Confidence 3467999999999884 5677788887653 11 578888888887653
No 150
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=27.68 E-value=78 Score=27.87 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.0
Q ss_pred eEEEeecCCCCcccHHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~~ 81 (166)
-+|+|+||-+|..++.+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~ 254 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP 254 (374)
T ss_pred CEEEEccCCccHHHHHHhhc
Confidence 37999999999999987654
No 151
>PHA03411 putative methyltransferase; Provisional
Probab=27.20 E-value=38 Score=29.30 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=15.1
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||.+|..++.+..
T Consensus 66 grVLDLGcGsGilsl~la~ 84 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLH 84 (279)
T ss_pred CeEEEcCCCCCHHHHHHHH
Confidence 4799999999987766543
No 152
>PRK00811 spermidine synthase; Provisional
Probab=26.42 E-value=1.1e+02 Score=25.83 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=17.6
Q ss_pred CCceEEEeecCCCCcccHHHHH
Q 044676 59 SVPFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 59 ~~~~~IADlGCS~G~Nsl~~~~ 80 (166)
+++-+|.|+||.+|..+..++.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~ 96 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK 96 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc
Confidence 4456899999999998876654
No 153
>smart00400 ZnF_CHCC zinc finger.
Probab=26.38 E-value=60 Score=20.50 Aligned_cols=20 Identities=20% Similarity=0.532 Sum_probs=15.8
Q ss_pred EEEeecCCCCcccHHHHHHH
Q 044676 63 TLADLGCSVGPNTVIAMQNF 82 (166)
Q Consensus 63 ~IADlGCS~G~Nsl~~~~~i 82 (166)
..=++||..|.+.|.++..+
T Consensus 23 ~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 23 FFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred EEEEeCCCCCCCHHHHHHHH
Confidence 35679999999988777655
No 154
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=26.02 E-value=42 Score=29.97 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=16.3
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||+.|.-|+.+..
T Consensus 240 ~~VLDlcag~G~kt~~la~ 258 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILE 258 (426)
T ss_pred CeEEEeCCCccHHHHHHHH
Confidence 5899999999999987654
No 155
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=25.73 E-value=1.4e+02 Score=27.86 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhcccccCCCCCCceEEEeec-CCCC--------cccHHHHHHHHHHHHHHH
Q 044676 38 KDKIVEVISAKLDVKSLCSVSSVPFTLADLG-CSVG--------PNTVIAMQNFMEAIKLKY 90 (166)
Q Consensus 38 ~~~l~~ai~~~~~~~~~~~~~~~~~~IADlG-CS~G--------~Nsl~~~~~ii~~i~~~~ 90 (166)
...|++||.+.+. .+ +.=.||| |..| .+|-.+.+.|++.++++.
T Consensus 425 A~~Le~Av~~tie-------~G--~~T~DLg~~~~G~~~~~~~~~~T~ef~daV~~~L~~~~ 477 (483)
T PLN03065 425 VHKLESACIETVE-------SG--KMTKDLAILIHGPKVSREFYLNTEEFIDAVAQTLATKR 477 (483)
T ss_pred HHHHHHHHHHHHH-------cC--CcccccccccCCCcccCCCCcCHHHHHHHHHHHHHHHh
Confidence 4467777776553 12 2246896 6656 578899999999987765
No 156
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=25.58 E-value=89 Score=25.45 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=27.4
Q ss_pred ceEEEeecCCCCcccHHHHH---------------HHHHHHHHHHhhcCCCCCCCCCceEEEecCC
Q 044676 61 PFTLADLGCSVGPNTVIAMQ---------------NFMEAIKLKYQDQGPAHSQILPQFQVFFNDQ 111 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~---------------~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDL 111 (166)
-.+|.|+||.+|..|-.+-. .+++.-++.....+ ...+++.+.|.
T Consensus 73 g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~------~~nv~~~~gdg 132 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG------IDNVEVVVGDG 132 (209)
T ss_dssp T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT------THSEEEEES-G
T ss_pred CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc------cCceeEEEcch
Confidence 37899999999999886653 23444455544433 23578888884
No 157
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=25.53 E-value=1.9e+02 Score=23.86 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCCC
Q 044676 33 FADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQV 112 (166)
Q Consensus 33 ~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDLP 112 (166)
+.+..++-|.+++++.++ .... +|.++||-+|--+..+.. . -|.++.-=+|+.
T Consensus 6 AaeRNk~pIl~vL~~~l~-------~~~~-~vLEiaSGtGqHa~~FA~--------~-----------lP~l~WqPSD~~ 58 (204)
T PF06080_consen 6 AAERNKDPILEVLKQYLP-------DSGT-RVLEIASGTGQHAVYFAQ--------A-----------LPHLTWQPSDPD 58 (204)
T ss_pred hhhhCHhHHHHHHHHHhC-------ccCc-eEEEEcCCccHHHHHHHH--------H-----------CCCCEEcCCCCC
Confidence 345566777778877664 1222 899999999977554321 1 346788888999
Q ss_pred CCchHHHhhhCCC-----CCccEEeeeccccccc----ccCCCceeEEEecccccccc
Q 044676 113 LNDFNTLFRYLPQ-----DRQYFAAGVAGSFYCR----LFPESSIHFVYSSTALHWLS 161 (166)
Q Consensus 113 ~NDFntLF~~L~~-----~~~~f~~gvpgSFY~r----lfP~~Svh~~~Ss~alHWLS 161 (166)
.+-+.++-.-+.. -..-...-|...--.- -++..++|.+++...+|-.+
T Consensus 59 ~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p 116 (204)
T PF06080_consen 59 DNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISP 116 (204)
T ss_pred hHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcC
Confidence 9998887664332 1111111111110000 12678899999999999654
No 158
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=25.09 E-value=40 Score=28.90 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=18.0
Q ss_pred cCCCceeEEEeccccccccc
Q 044676 143 FPESSIHFVYSSTALHWLSR 162 (166)
Q Consensus 143 fP~~Svh~~~Ss~alHWLS~ 162 (166)
|++.+.|=++|-.|++||=.
T Consensus 108 frpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCCCccceEEEeeeeeeecc
Confidence 78899999999999999954
No 159
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=24.88 E-value=39 Score=27.54 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=12.8
Q ss_pred EEeecCCCCcccHHHHH
Q 044676 64 LADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 64 IADlGCS~G~Nsl~~~~ 80 (166)
|||.||=+|.-.+.++.
T Consensus 1 vaDIGtDHgyLpi~L~~ 17 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLK 17 (205)
T ss_dssp EEEET-STTHHHHHHHH
T ss_pred CceeccchhHHHHHHHh
Confidence 79999999988776553
No 160
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=24.10 E-value=1.1e+02 Score=27.11 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=16.4
Q ss_pred eEEEeecCCCCcccHHHHH
Q 044676 62 FTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 62 ~~IADlGCS~G~Nsl~~~~ 80 (166)
-+|.|+||.+|.-++.+..
T Consensus 294 ~~vLDl~cG~G~~sl~la~ 312 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAK 312 (431)
T ss_pred CEEEEcCCCcCHHHHHHHH
Confidence 5799999999999988654
No 161
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=24.05 E-value=60 Score=22.04 Aligned_cols=40 Identities=20% Similarity=0.296 Sum_probs=23.5
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecC
Q 044676 23 YSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGC 69 (166)
Q Consensus 23 Y~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGC 69 (166)
+++++.+-+.-+..+...+.+.|.+.+. .++.+.|-+||-
T Consensus 10 ia~~~~~s~~~v~~vl~~~~~~i~~~L~-------~g~~V~l~g~G~ 49 (90)
T PF00216_consen 10 IAEKTGLSKKDVEAVLDALFDVIKEALK-------EGESVKLPGFGT 49 (90)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHHHH-------TT-EEEETTTEE
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHh-------cCCeEEeeceeE
Confidence 3444445455556666666666666553 355677777774
No 162
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=23.76 E-value=4.7e+02 Score=22.40 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=46.8
Q ss_pred chHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCC-ceEEEeecCCCCcc-cHHHHHHHHHHHHHHHhhcCCCCCC
Q 044676 22 SYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSV-PFTLADLGCSVGPN-TVIAMQNFMEAIKLKYQDQGPAHSQ 99 (166)
Q Consensus 22 sY~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~-~~~IADlGCS~G~N-sl~~~~~ii~~i~~~~~~~~~~~~~ 99 (166)
.|-.+...-++-++....+++..+..... .++ .++| -+||.-|.- |..+...+-+.+++
T Consensus 212 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~i-~igCtGG~HRSV~~~e~l~~~l~~----------- 272 (288)
T PRK05416 212 DYVLAQPEVEEFLDKIRDLLEFWLPGYER-------EGKSYLTI-AIGCTGGQHRSVAIAERLAERLSK----------- 272 (288)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHH-------cCCCEEEE-EEecCCCcccHHHHHHHHHHHHhC-----------
Confidence 46666666667777778888777765332 343 4555 799999865 55666666666521
Q ss_pred CCCceEEEecCCCC
Q 044676 100 ILPQFQVFFNDQVL 113 (166)
Q Consensus 100 ~~~eiqv~~nDLP~ 113 (166)
--.+++.|-|+..
T Consensus 273 -~~~v~~~Hrd~~~ 285 (288)
T PRK05416 273 -GYNVQVRHRDLER 285 (288)
T ss_pred -CCcEEEEeCcccc
Confidence 1258999999853
No 163
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.62 E-value=83 Score=27.18 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=12.5
Q ss_pred ceEEEeecCCCCcccH
Q 044676 61 PFTLADLGCSVGPNTV 76 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl 76 (166)
--++.||||.+|=.--
T Consensus 126 F~~~lDLGCGTGL~G~ 141 (287)
T COG4976 126 FRRMLDLGCGTGLTGE 141 (287)
T ss_pred cceeeecccCcCcccH
Confidence 4579999999996643
No 164
>PRK06850 hypothetical protein; Provisional
Probab=23.60 E-value=3.6e+02 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=31.8
Q ss_pred CCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecCC
Q 044676 59 SVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFNDQ 111 (166)
Q Consensus 59 ~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nDL 111 (166)
..++. .|-|-|.-|..++.-+.+++.+.-.. +. ...+.|+++|.
T Consensus 34 ~~P~v---V~fSGGKDStavL~Lv~~Al~~lp~e-~r-----~k~v~Vi~~DT 77 (507)
T PRK06850 34 NRPWV---IGYSGGKDSTAVLQLVWNALAGLPPE-KR-----TKPVYVISSDT 77 (507)
T ss_pred CCCeE---EeCCCCchHHHHHHHHHHHHHhcchh-cc-----CCcEEEEECCC
Confidence 44554 68899999999999998887642111 11 34799999996
No 165
>PF03676 UPF0183: Uncharacterised protein family (UPF0183); InterPro: IPR005373 Members of this family are proteins of unknown function.
Probab=22.43 E-value=64 Score=29.18 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=35.3
Q ss_pred cCCCCcccH-HHHHHHHHHHHHHHhhcCCCCCCCCCceEEEecC-----------CCCCchHHHhhhC
Q 044676 68 GCSVGPNTV-IAMQNFMEAIKLKYQDQGPAHSQILPQFQVFFND-----------QVLNDFNTLFRYL 123 (166)
Q Consensus 68 GCS~G~Nsl-~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv~~nD-----------LP~NDFntLF~~L 123 (166)
||+.|+-.| ..+.++|..|+...+. -+.++|.++| ||.|-+.-+|...
T Consensus 1 ~~~~g~f~LG~~l~~vl~~lk~~~~~--------~~~v~~~Y~~~~P~~~~ivi~l~~~GirL~Fd~~ 60 (394)
T PF03676_consen 1 GNSLGEFVLGMSLHQVLTILKSEPQT--------FPKVDLIYSDQDPLSSDIVINLPENGIRLRFDGP 60 (394)
T ss_pred CCccceEEcCCcHHHHHHHHHhcccc--------CCceEEEECCCCCCcCCEEEEcCCCCeEEEECCC
Confidence 889999998 7889999999976531 3456777665 6677777776653
No 166
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=22.26 E-value=94 Score=21.62 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCC
Q 044676 27 SFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSV 71 (166)
Q Consensus 27 S~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~ 71 (166)
+.+-+..+..+...+.++|.+.+. ....+.|.+||.-.
T Consensus 15 ~~~s~~~v~~vv~~~~~~i~~~L~-------~g~~V~l~gfG~F~ 52 (94)
T TIGR00988 15 SHLPAKDVEDAVKTMLEHMASALA-------QGDRIEIRGFGSFS 52 (94)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-------cCCeEEEcCcEEEE
Confidence 344455666666667777766553 35578899998654
No 167
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=22.16 E-value=1.2e+02 Score=20.64 Aligned_cols=41 Identities=5% Similarity=-0.023 Sum_probs=24.7
Q ss_pred CCCCcccHHHHHHHHH----HHHHHHhhcCCCCCCCCCceEEEecCCCCCch
Q 044676 69 CSVGPNTVIAMQNFME----AIKLKYQDQGPAHSQILPQFQVFFNDQVLNDF 116 (166)
Q Consensus 69 CS~G~Nsl~~~~~ii~----~i~~~~~~~~~~~~~~~~eiqv~~nDLP~NDF 116 (166)
|..|..+-..=.++++ ++.+...+ + +.-+.|+++|.|-.|+
T Consensus 8 ~~~g~~~~~~K~~la~~vT~~~~~~lg~---~----~~~i~Viieev~~~~w 52 (69)
T COG1942 8 LFEGRLDEEQKAELAAEVTEVTVETLGK---D----PSAIHVIIEEVPPENW 52 (69)
T ss_pred ecCCCCCHHHHHHHHHHHHHHHHHHhCC---C----cccEEEEEEecChhhe
Confidence 4446666654444444 44444432 2 4579999999987664
No 168
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=22.10 E-value=52 Score=27.02 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=17.3
Q ss_pred CceEEEeecCCCCcccHHHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAMQN 81 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~~~ 81 (166)
++-+|.|+||.+|.-++.+...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~ 89 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALA 89 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHh
Confidence 3568999999999988866543
No 169
>KOG1528 consensus Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1 [Nucleotide transport and metabolism; Inorganic ion transport and metabolism]
Probab=21.94 E-value=1.5e+02 Score=26.45 Aligned_cols=48 Identities=29% Similarity=0.308 Sum_probs=26.9
Q ss_pred chHHhhHHHHHHHHHHHHHHHHHHHhhhcccc--cCCCCCCceEEEeecC
Q 044676 22 SYSKNSFYQKQFADLVKDKIVEVISAKLDVKS--LCSVSSVPFTLADLGC 69 (166)
Q Consensus 22 sY~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~--~~~~~~~~~~IADlGC 69 (166)
+|-+-=....++...|.-+-++.-++++.-+. ..-.+..|++|||||.
T Consensus 2 syekEl~~A~~AV~lAsrL~~~Vq~~L~~~~~~v~~K~D~SPVTvaDyG~ 51 (351)
T KOG1528|consen 2 SYEKELDAAKKAVRLASRLCVKVQKSLLSSKEKVWSKSDKSPVTVADYGS 51 (351)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccCCCCCcchhhhhH
Confidence 34444445556666666665555555443210 0002567999999994
No 170
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=21.61 E-value=32 Score=16.36 Aligned_cols=8 Identities=38% Similarity=0.680 Sum_probs=5.7
Q ss_pred ccccccCC
Q 044676 157 LHWLSRVF 164 (166)
Q Consensus 157 lHWLS~vP 164 (166)
.|||+=-|
T Consensus 1 WhWL~~~~ 8 (13)
T PF04648_consen 1 WHWLRLSP 8 (13)
T ss_pred CcceeccC
Confidence 39998654
No 171
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=20.89 E-value=1.4e+02 Score=20.28 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=23.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCC
Q 044676 25 KNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSV 71 (166)
Q Consensus 25 ~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~ 71 (166)
+++.+=+..+..+...+.+.|.+.+. .+..+.|-+||.-.
T Consensus 12 ~~~~~~~~~v~~vl~~l~~~i~~~L~-------~g~~V~i~g~G~F~ 51 (90)
T smart00411 12 EKAGLSKKDAKAAVDAFLEIITEALK-------KGEKVELRGFGTFE 51 (90)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHh-------CCCeEEEeCcEEEE
Confidence 33434344555555566666655453 35578999998654
No 172
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=20.79 E-value=1.4e+02 Score=27.67 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=54.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcccHHHHHHHHHHHHHHHhhcCCCCCCCCCceEE
Q 044676 27 SFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPNTVIAMQNFMEAIKLKYQDQGPAHSQILPQFQV 106 (166)
Q Consensus 27 S~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~~~~eiqv 106 (166)
+..|++.++...|.+.=.-+. + + ....-.+.|+||..|...+..... .|+..+
T Consensus 322 ~~~q~~~~e~~~p~~~i~~ek-l-f------~~~~p~~lEIG~G~G~~~~~~A~~-------------------~p~~~~ 374 (506)
T PRK01544 322 SGVQQNLLDNELPKYLFSKEK-L-V------NEKRKVFLEIGFGMGEHFINQAKM-------------------NPDALF 374 (506)
T ss_pred CHHHHHHHHhhhhhhCCCHHH-h-C------CCCCceEEEECCCchHHHHHHHHh-------------------CCCCCE
Confidence 347888888888877522211 1 1 234567899999999876543211 233334
Q ss_pred EecCCCCCchHHHhhhCCC--CCccEEeeecccccccccCCCceeEEEecccccc
Q 044676 107 FFNDQVLNDFNTLFRYLPQ--DRQYFAAGVAGSFYCRLFPESSIHFVYSSTALHW 159 (166)
Q Consensus 107 ~~nDLP~NDFntLF~~L~~--~~~~f~~gvpgSFY~rlfP~~Svh~~~Ss~alHW 159 (166)
+--|.-.+=...+.+.... ..++.+..---.+..+.||++||+-+|-.+.=-|
T Consensus 375 iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW 429 (506)
T PRK01544 375 IGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW 429 (506)
T ss_pred EEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCC
Confidence 4434333322222222111 1233222111233456677777777776666555
No 173
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=20.63 E-value=41 Score=26.59 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=22.7
Q ss_pred EeeecccccccccCCCc----eeEEEecccccccccCCC
Q 044676 131 AAGVAGSFYCRLFPESS----IHFVYSSTALHWLSRVFK 165 (166)
Q Consensus 131 ~~gvpgSFY~rlfP~~S----vh~~~Ss~alHWLS~vP~ 165 (166)
=.|-||.||+|.++.-+ .-+|. +|..+.+.++|.
T Consensus 126 RLG~GgGyYDR~L~~~~~~~~~~igl-a~~~Q~~~~ip~ 163 (182)
T PRK10333 126 RLGMGGGFYDRTLQNWQHYKTQPVGY-AHDCQLVEKLPV 163 (182)
T ss_pred cccCCcchHHHHHHHhcccCCcEEEE-eeeeEEeCCcCC
Confidence 36779999999999622 23454 455566666764
No 174
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=20.53 E-value=5.7e+02 Score=22.19 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=44.8
Q ss_pred chHHhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCceEEEeecCCCCcc-cHHHHHHHHHHHHHHHhhcCCCCCCC
Q 044676 22 SYSKNSFYQKQFADLVKDKIVEVISAKLDVKSLCSVSSVPFTLADLGCSVGPN-TVIAMQNFMEAIKLKYQDQGPAHSQI 100 (166)
Q Consensus 22 sY~~nS~~Q~~~i~~~~~~l~~ai~~~~~~~~~~~~~~~~~~IADlGCS~G~N-sl~~~~~ii~~i~~~~~~~~~~~~~~ 100 (166)
.|-.+...-+.-++....+++-.+..... .++.....-+||.-|.- |..+.+.+-+.++++.
T Consensus 209 ~yv~~~~~~~~f~~~~~~~l~~~lp~y~~-------egk~~ltIaiGCTGG~HRSV~iae~La~~L~~~~---------- 271 (284)
T PF03668_consen 209 DYVLSDPEAQEFLEKIEDLLDFLLPRYEK-------EGKSYLTIAIGCTGGQHRSVAIAERLAERLREKG---------- 271 (284)
T ss_pred HHHHcChhHHHHHHHHHHHHHHHHHHHHh-------cCCceEEEEEEcCCCcCcHHHHHHHHHHHHHhcC----------
Confidence 46566555556677777777766654221 34444444599999965 4455555555555432
Q ss_pred CCceEEEecCCCCC
Q 044676 101 LPQFQVFFNDQVLN 114 (166)
Q Consensus 101 ~~eiqv~~nDLP~N 114 (166)
..+.|.|-|+--|
T Consensus 272 -~~v~v~HRdl~k~ 284 (284)
T PF03668_consen 272 -YTVVVRHRDLEKN 284 (284)
T ss_pred -CcceEEcCCCCCC
Confidence 2467899888543
No 175
>PRK04457 spermidine synthase; Provisional
Probab=20.20 E-value=2e+02 Score=23.94 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=15.5
Q ss_pred CceEEEeecCCCCcccHHHH
Q 044676 60 VPFTLADLGCSVGPNTVIAM 79 (166)
Q Consensus 60 ~~~~IADlGCS~G~Nsl~~~ 79 (166)
.+-+|.|+||..|.-+..+.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~ 85 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIY 85 (262)
T ss_pred CCCEEEEECCCHhHHHHHHH
Confidence 34579999999998776554
No 176
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=20.15 E-value=1.9e+02 Score=24.05 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=15.6
Q ss_pred ceEEEeecCCCCcccHHHHH
Q 044676 61 PFTLADLGCSVGPNTVIAMQ 80 (166)
Q Consensus 61 ~~~IADlGCS~G~Nsl~~~~ 80 (166)
+-+|.|+||.+|..+..++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~ 92 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLK 92 (270)
T ss_pred CCEEEEEcCCchHHHHHHHh
Confidence 44999999999987765543
Done!