BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044677
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFR|A Chain A, Solution Structure Of The Conserved Hypothetical Protein
Tt1886, Possibly Sterol Carrier Protein, From Thermus
Thermophilus Hb8
Length = 143
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 37 QEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTP-PIQRLLLAWH 95
+ W +C+ ++ +AY KA ++W E SL V P+ P + +L WH
Sbjct: 13 EAWAQAYCRKLNESEAYRKAASTW--------EGSLALAVRPDPKAGFPKGVAVVLDLWH 64
Query: 96 D 96
Sbjct: 65 G 65
>pdb|2CX7|A Chain A, Crystal Structure Of Sterol Carrier Protein 2
pdb|2CX7|B Chain B, Crystal Structure Of Sterol Carrier Protein 2
Length = 130
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 37 QEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTP-PIQRLLLAWH 95
+ W +C+ ++ +AY KA ++W E SL V P+ P + +L WH
Sbjct: 6 EAWAQAYCRKLNESEAYRKAASTW--------EGSLALAVRPDPKAGFPKGVAVVLDLWH 57
Query: 96 D 96
Sbjct: 58 G 58
>pdb|1QPP|A Chain A, Crystal Structures Of Self Capping Papd Chaperone
Homodimers
pdb|1QPP|B Chain B, Crystal Structures Of Self Capping Papd Chaperone
Homodimers
Length = 218
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 68 IESSLREKVSSPPRIQTPPIQRL 90
IE+ +EK+ + P I TPP+QRL
Sbjct: 37 IENENQEKIITGPVIATPPVQRL 59
>pdb|1QPX|A Chain A, Crystal Structures Of Self-Capping Papd Chaperone
Homodimers
pdb|1QPX|B Chain B, Crystal Structures Of Self-Capping Papd Chaperone
Homodimers
Length = 218
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 68 IESSLREKVSSPPRIQTPPIQRL 90
IE+ +EK+ + P I TPP+QRL
Sbjct: 37 IENENQEKIITGPVIATPPVQRL 59
>pdb|2J7L|A Chain A, E.Coli P Pilus Chaperone Papd In Complex With A Pilus
Biogenesis Inhibitor, Pilicide 2c
pdb|3DPA|A Chain A, Crystal Structure Of Chaperone Protein Papd Reveals An
Immunoglobulin Fold
Length = 218
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 68 IESSLREKVSSPPRIQTPPIQRL 90
IE+ +EK+ + P I TPP+QRL
Sbjct: 37 IENENQEKIITGPVIATPPVQRL 59
>pdb|2WMP|A Chain A, Structure Of The E. Coli Chaperone Papd In Complex With
The Pilin Domain Of The Papgii Adhesin
Length = 224
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 68 IESSLREKVSSPPRIQTPPIQRL 90
IE+ +EK+ + P I TPP+QRL
Sbjct: 37 IENENQEKIITGPVIATPPVQRL 59
>pdb|1PDK|A Chain A, Papd-Papk Chaperone-Pilus Subunit Complex From E.Coli P
Pilus
pdb|2J2Z|A Chain A, X-Ray Structure Of The Chaperone Papd In Complex With
The Pilus Terminator Subunit Paph At 2.3 Angstrom
Resolution
pdb|2UY6|A Chain A, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2UY7|A Chain A, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2UY7|C Chain C, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2UY7|E Chain E, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2UY7|G Chain G, Crystal Structure Of The P Pilus Rod Subunit Papa
pdb|2W07|A Chain A, Structural Determinants Of Polymerization Reactivity Of
The P Pilus Adaptor Subunit Papf
pdb|2XG4|A Chain A, E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph
Bound To Pilus Biogenesis Inhibitor, Pilicide 2c
pdb|2XG5|A Chain A, E. Coli P Pilus Chaperone-Subunit Complex Papd-Paph
Bound To Pilus Biogenesis Inhibitor, Pilicide 5d
Length = 218
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 68 IESSLREKVSSPPRIQTPPIQRL 90
IE+ +EK+ + P I TPP+QRL
Sbjct: 37 IENENQEKIITGPVIATPPVQRL 59
>pdb|3ME0|A Chain A, Structure Of The E. Coli Chaperone Papd In Complex With
The Pilin Domain Of The Papgii Adhesin
Length = 218
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 68 IESSLREKVSSPPRIQTPPIQRL 90
IE+ +EK+ + P I TPP+QRL
Sbjct: 37 IENENQEKIITGPVIATPPVQRL 59
>pdb|1N0L|A Chain A, Crystal Structure Of The Papd Chaperone (C-Terminally 6x
Histidine-Tagged) Bound To The Pape Pilus Subunit (N-
Terminal-Deleted) From Uropathogenic E. Coli
pdb|1N0L|C Chain C, Crystal Structure Of The Papd Chaperone (C-Terminally 6x
Histidine-Tagged) Bound To The Pape Pilus Subunit (N-
Terminal-Deleted) From Uropathogenic E. Coli
Length = 224
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 68 IESSLREKVSSPPRIQTPPIQRL 90
IE+ +EK+ + P I TPP+QRL
Sbjct: 37 IENENQEKIITGPVIATPPVQRL 59
>pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|B Chain B, Rnap At 3.2ang
pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 1131
Score = 26.9 bits (58), Expect = 10.0, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 153 NKYITRRTQEELDADDTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLR 212
N +TR E+LD+ T D V + K ++ L EEEE AY A+ LT
Sbjct: 589 NPLVTREDIEKLDSGSITFDDLVRQGK--IEYLDA--EEEENAYV----ALEPSDLTPEH 640
Query: 213 NHL 215
HL
Sbjct: 641 THL 643
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,602,810
Number of Sequences: 62578
Number of extensions: 229000
Number of successful extensions: 796
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 787
Number of HSP's gapped (non-prelim): 19
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)