BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044677
         (250 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q15032|R3HD1_HUMAN R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3
          Length = 1099

 Score = 33.9 bits (76), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 28/126 (22%)

Query: 80  PRIQTPPI---QRLLL----AWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEEMKLKE 132
           PR + PP+    R+LL    A+  L   + D+  +S I      +N   + +  + K  E
Sbjct: 188 PRKKFPPMTSYHRMLLHRVAAYFGLDHNV-DQSGKSVI------VNKTSNTRIPDQKFNE 240

Query: 133 RCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLKKRLEEE 192
             ++ K E         D+  +YI +R     D DD  ++  + +     D   K +EE 
Sbjct: 241 HIKDDKGE---------DFQKRYILKRDNSSFDKDDNQMRIRLKD-----DRRSKSIEER 286

Query: 193 EEAYQR 198
           EE YQR
Sbjct: 287 EEEYQR 292


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.127    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,178,282
Number of Sequences: 539616
Number of extensions: 3344126
Number of successful extensions: 16689
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 314
Number of HSP's that attempted gapping in prelim test: 16135
Number of HSP's gapped (non-prelim): 823
length of query: 250
length of database: 191,569,459
effective HSP length: 115
effective length of query: 135
effective length of database: 129,513,619
effective search space: 17484338565
effective search space used: 17484338565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)