Query 044677
Match_columns 250
No_of_seqs 117 out of 201
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:39:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04782 DUF632: Protein of un 100.0 4.1E-42 8.8E-47 316.2 14.4 120 1-120 191-312 (312)
2 cd07599 BAR_Rvs167p The Bin/Am 96.8 0.34 7.3E-06 42.4 21.0 180 27-236 16-197 (216)
3 cd07591 BAR_Rvs161p The Bin/Am 95.8 1.3 2.7E-05 39.5 19.7 158 27-237 25-193 (224)
4 cd07676 F-BAR_FBP17 The F-BAR 93.6 5.4 0.00012 36.1 22.2 185 43-239 28-229 (253)
5 PF03114 BAR: BAR domain; Int 91.5 7.5 0.00016 32.6 22.3 60 179-238 167-226 (229)
6 cd07653 F-BAR_CIP4-like The F- 89.9 13 0.00029 32.8 22.1 60 179-238 167-226 (251)
7 cd07675 F-BAR_FNBP1L The F-BAR 89.8 15 0.00033 33.4 21.7 148 87-240 61-229 (252)
8 cd07657 F-BAR_Fes_Fer The F-BA 87.8 20 0.00043 32.1 21.6 202 24-237 5-225 (237)
9 cd07598 BAR_FAM92 The Bin/Amph 86.9 21 0.00046 31.5 22.1 181 27-246 11-208 (211)
10 cd07680 F-BAR_PACSIN1 The F-BA 82.7 38 0.00083 30.9 20.7 62 173-235 168-229 (258)
11 cd07604 BAR_ASAPs The Bin/Amph 81.9 37 0.00079 30.1 21.8 203 19-240 8-212 (215)
12 cd07593 BAR_MUG137_fungi The B 81.2 39 0.00085 30.0 19.6 179 29-242 9-210 (215)
13 PF09325 Vps5: Vps5 C terminal 77.8 45 0.00098 28.8 22.5 184 24-236 28-233 (236)
14 cd07600 BAR_Gvp36 The Bin/Amph 75.4 63 0.0014 29.2 18.6 103 39-145 35-167 (242)
15 cd07633 BAR_OPHN1 The Bin/Amph 73.0 68 0.0015 28.5 21.9 37 29-65 18-54 (207)
16 KOG4503 Uncharacterized conser 72.9 5.2 0.00011 35.6 4.0 39 83-121 145-186 (230)
17 COG5085 Predicted membrane pro 72.9 5.2 0.00011 35.6 4.0 39 83-121 145-186 (230)
18 cd07627 BAR_Vps5p The Bin/Amph 72.0 67 0.0015 28.0 23.2 187 23-236 7-213 (216)
19 cd07636 BAR_GRAF The Bin/Amphi 70.7 76 0.0017 28.1 21.6 118 26-157 15-132 (207)
20 cd07642 BAR_ASAP2 The Bin/Amph 70.1 81 0.0018 28.2 22.3 198 22-240 11-212 (215)
21 cd07634 BAR_GAP10-like The Bin 69.5 81 0.0018 27.9 22.6 40 27-66 16-55 (207)
22 cd07603 BAR_ACAPs The Bin/Amph 68.0 83 0.0018 27.5 23.1 153 29-235 18-188 (200)
23 cd07655 F-BAR_PACSIN The F-BAR 67.5 94 0.002 27.9 21.5 173 43-235 28-229 (258)
24 cd07590 BAR_Bin3 The Bin/Amphi 67.4 93 0.002 27.8 20.9 181 24-240 15-212 (225)
25 cd07637 BAR_ACAP3 The Bin/Amph 66.5 90 0.0019 27.3 22.4 55 102-156 55-125 (200)
26 smart00721 BAR BAR domain. 64.3 92 0.002 26.6 20.6 198 29-239 29-236 (239)
27 cd07647 F-BAR_PSTPIP The F-BAR 60.9 1.2E+02 0.0026 26.8 21.6 156 42-223 27-202 (239)
28 cd07307 BAR The Bin/Amphiphysi 59.3 91 0.002 24.9 22.2 27 210-236 165-191 (194)
29 cd07620 BAR_SH3BP1 The Bin/Amp 59.0 1.5E+02 0.0032 27.3 18.5 191 45-242 22-239 (257)
30 PF10104 Brr6_like_C_C: Di-sul 57.7 32 0.0007 28.1 5.8 39 84-122 65-106 (135)
31 PF04782 DUF632: Protein of un 55.8 1.8E+02 0.0039 27.3 12.2 53 102-154 72-124 (312)
32 KOG2070 Guanine nucleotide exc 54.8 2.1E+02 0.0045 29.0 11.6 31 41-71 104-134 (661)
33 cd07635 BAR_GRAF2 The Bin/Amph 54.0 1.6E+02 0.0034 26.1 22.9 38 28-65 17-54 (207)
34 cd07596 BAR_SNX The Bin/Amphip 53.8 1.3E+02 0.0028 25.1 20.0 116 24-153 8-138 (218)
35 PF14644 DUF4456: Domain of un 50.2 1.7E+02 0.0038 25.4 12.9 102 130-241 86-187 (208)
36 KOG4657 Uncharacterized conser 48.9 2.1E+02 0.0045 26.0 10.8 84 108-204 41-127 (246)
37 cd07602 BAR_RhoGAP_OPHN1-like 48.8 1.9E+02 0.0042 25.6 23.0 39 27-65 16-54 (207)
38 PF01806 Paramyxo_P: Paramyxov 47.7 78 0.0017 28.2 6.8 66 25-92 71-137 (248)
39 cd07639 BAR_ACAP1 The Bin/Amph 42.2 2.4E+02 0.0052 24.8 21.9 32 29-60 18-49 (200)
40 cd07673 F-BAR_FCHO2 The F-BAR 41.7 2.7E+02 0.0059 25.2 14.9 45 179-224 156-200 (269)
41 cd07589 BAR_DNMBP The Bin/Amph 41.2 2.3E+02 0.005 24.3 19.4 113 91-239 64-177 (195)
42 PF11690 DUF3287: Protein of u 39.6 1.7E+02 0.0037 23.4 7.1 50 99-150 30-79 (109)
43 cd07617 BAR_Endophilin_B2 The 39.1 2.9E+02 0.0062 24.8 13.7 61 88-148 95-156 (220)
44 cd07638 BAR_ACAP2 The Bin/Amph 38.3 2.8E+02 0.006 24.4 21.6 29 29-57 11-39 (200)
45 PF11417 Inhibitor_G39P: Loade 37.8 91 0.002 22.9 4.9 29 87-115 29-57 (71)
46 cd07606 BAR_SFC_plant The Bin/ 36.8 2.9E+02 0.0063 24.2 21.9 116 25-157 13-128 (202)
47 cd07671 F-BAR_PSTPIP1 The F-BA 35.4 3.3E+02 0.0071 24.4 19.9 142 39-205 24-185 (242)
48 PF07111 HCR: Alpha helical co 34.2 5.8E+02 0.013 26.9 11.5 123 112-240 270-407 (739)
49 PF04065 Not3: Not1 N-terminal 33.2 2.9E+02 0.0062 24.9 8.3 84 104-204 15-98 (233)
50 PRK14153 heat shock protein Gr 31.8 3.1E+02 0.0067 24.0 8.1 38 180-224 61-98 (194)
51 PF10168 Nup88: Nuclear pore c 31.1 6.4E+02 0.014 26.4 14.6 21 130-150 563-583 (717)
52 cd07641 BAR_ASAP1 The Bin/Amph 31.0 3.9E+02 0.0085 23.9 20.4 179 36-240 25-212 (215)
53 KOG0163 Myosin class VI heavy 29.5 4.5E+02 0.0098 28.3 9.8 32 105-136 900-931 (1259)
54 COG5420 Uncharacterized conser 28.8 2E+02 0.0044 20.9 5.3 35 206-240 27-61 (71)
55 cd07613 BAR_Endophilin_A1 The 27.9 4.4E+02 0.0096 23.6 14.5 127 89-242 91-218 (223)
56 KOG0999 Microtubule-associated 27.6 5E+02 0.011 26.8 9.5 44 106-149 565-611 (772)
57 PF05384 DegS: Sensor protein 26.5 4E+02 0.0086 22.6 14.8 132 86-225 17-152 (159)
58 cd07648 F-BAR_FCHO The F-BAR ( 25.7 4.7E+02 0.01 23.2 16.8 42 180-222 150-191 (261)
59 cd07594 BAR_Endophilin_B The B 23.8 5.3E+02 0.011 23.1 17.9 115 28-144 18-152 (229)
60 PF08654 DASH_Dad2: DASH compl 23.5 3.7E+02 0.0079 21.1 7.0 28 207-234 46-73 (103)
61 cd07616 BAR_Endophilin_B1 The 22.7 5.6E+02 0.012 23.0 13.0 59 90-148 97-156 (229)
62 PF07701 HNOBA: Heme NO bindin 22.5 2.1E+02 0.0046 25.2 5.5 65 90-154 134-202 (219)
63 cd07632 BAR_APPL2 The Bin/Amph 21.3 6E+02 0.013 22.7 16.4 25 102-126 59-83 (215)
64 PRK14149 heat shock protein Gr 21.2 3E+02 0.0066 24.0 6.1 39 179-224 63-101 (191)
65 cd07588 BAR_Amphiphysin The Bi 20.6 5.9E+02 0.013 22.4 19.5 81 28-122 27-108 (211)
66 cd07652 F-BAR_Rgd1 The F-BAR ( 20.5 6E+02 0.013 22.4 23.1 51 184-234 169-219 (234)
67 cd07614 BAR_Endophilin_A2 The 20.4 6.2E+02 0.013 22.6 14.4 118 90-241 92-217 (223)
No 1
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=100.00 E-value=4.1e-42 Score=316.23 Aligned_cols=120 Identities=47% Similarity=0.689 Sum_probs=116.4
Q ss_pred CHHHHHHHhccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--ccccccccCCCCC
Q 044677 1 SQSKVVTALKSLDISQSPKETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNL--IPIESSLREKVSS 78 (250)
Q Consensus 1 ~Q~~ii~~~k~l~~~~~~~~tse~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~--~p~e~~~~~~~~s 78 (250)
.|++||+++++|++++++++||++||+||+|||.||++|++||++||++||+||+||||||++|+ .|++++++++|+|
T Consensus 191 ~Q~~ii~~~k~l~~~~~~~~~s~~h~~at~~Le~el~~W~~sF~~~i~~Qk~YV~aLn~WL~~~l~~~~~~~~~~~~~~s 270 (312)
T PF04782_consen 191 KQFQIIQEAKSLDSSPSNEPTSESHRQATLQLEAELQNWHSSFCKWIKAQKSYVKALNGWLKLCLMQEPEETSDGRPPSS 270 (312)
T ss_pred HHHHHHHHHhccCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCCCC
Confidence 49999999999999999999999999999999999999999999999999999999999999999 5778888999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Q 044677 79 PPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTI 120 (250)
Q Consensus 79 P~r~~aPpIf~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i 120 (250)
|+|.++||||+||++|+++||+||+++|++||++|+++||+|
T Consensus 271 p~~~~aPpIf~lC~~W~~aLd~lp~k~v~~AIk~f~~~v~~i 312 (312)
T PF04782_consen 271 PRRSGAPPIFVLCNDWSQALDRLPDKEVSEAIKSFAAVVHHI 312 (312)
T ss_pred ccccCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 2
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=96.76 E-value=0.34 Score=42.39 Aligned_cols=180 Identities=18% Similarity=0.240 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHH
Q 044677 27 ERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIA 106 (250)
Q Consensus 27 ~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v 106 (250)
..+..|-.++..|..+.....++|..+++++.+=.. |..... ..+.+++ ..+....-|.+|...++.|-. .+
T Consensus 16 ~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~----p~~~~~-~~~~~~~--~~~~~~~~~~~y~~~~~~l~~-~~ 87 (216)
T cd07599 16 KSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYD----PIVGPK-ESVGSHP--APESTLARLSRYVKALEELKK-EL 87 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CcCCCC-cCcCCCC--CcHHHHHHHHHHHHHHHHHHH-HH
Confidence 356788889999999999999999999887766443 432221 1111111 134577889999999988843 33
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhh-hccccccccccccccchHHHHHHHHHH
Q 044677 107 RSAIGNFAALINTIMHHQEEEM-KLKERCEETKKELSRKTRQFEDWYNKYIT-RRTQEELDADDTTLKDAVTERKFVVDV 184 (250)
Q Consensus 107 ~~AIk~f~~~v~~i~~~Q~eE~-~~k~k~e~~~Kelekk~~~l~~~~~k~~~-~~~~~~~~~~~~~~~~~~~ekk~~le~ 184 (250)
..-+..|-..|- .-..+. .+=..+..+-+..++|.-.+++...++.. .... .. .-......|..
T Consensus 88 ~~~l~~i~~~V~----~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k--------~~--~~~kd~~kl~k 153 (216)
T cd07599 88 LEELEFFEERVI----LPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKK--------KE--LSLKDEKQLAK 153 (216)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--------CC--CChhHHHHHHH
Confidence 333333322111 111111 11112222334444555555555554322 1000 00 00223446777
Q ss_pred HHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 044677 185 LKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDL 236 (250)
Q Consensus 185 ~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l 236 (250)
.+++++..++.|. .-.+.|+.-||.+|....+|-..++.+|=-+
T Consensus 154 ae~~l~~a~~~y~--------~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ 197 (216)
T cd07599 154 LERKLEEAKEEYE--------ALNELLKSELPKLLALADEFLPPLFKSFYYI 197 (216)
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888886 2345699999999999999999988876443
No 3
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=95.82 E-value=1.3 Score=39.46 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHH-
Q 044677 27 ERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEI- 105 (250)
Q Consensus 27 ~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~- 105 (250)
..+..|..++..|..++....++|....++|.+ -+.|+.+. ....+|..|...++.|.+..
T Consensus 25 ~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~----lY~p~~~~--------------~~~~~~~~y~~~v~~l~~~~~ 86 (224)
T cd07591 25 KASTKLQKEAKGYLDSLRALTSSQARIAETISS----FYGDAGDK--------------DGAMLSQEYKQAVEELDAETV 86 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCCCc--------------cHhHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999999999876 12343221 11468888888887764332
Q ss_pred ----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchH
Q 044677 106 ----------ARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAV 175 (250)
Q Consensus 106 ----------v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~ 175 (250)
|+.=|..|.+.+-.|-. +-+..++|...+++...++-.-. ....+++
T Consensus 87 ~el~~~~~~~V~~Pl~~~~~~~~~i~k--------------~IkKR~~KllDYD~~~~k~~kl~--------~K~~kd~- 143 (224)
T cd07591 87 KELDGPYRQTVLDPIGRFNSYFPEINE--------------AIKKRNHKLLDYDAARAKVRKLI--------DKPSEDP- 143 (224)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhhHHH--------------HHHHHHhhHhhHHHHHHHHHHHH--------hcccCCH-
Confidence 22233333333333321 22222333333343333321000 0011111
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 044677 176 TERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLK 237 (250)
Q Consensus 176 ~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~ 237 (250)
..|......++..++.|.. -.+.|+.-||.++..-..|-..|++++-.+.
T Consensus 144 ----~kL~kae~el~~a~~~Ye~--------lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ 193 (224)
T cd07591 144 ----TKLPRAEKELDEAKEVYET--------LNDQLKTELPQLVDLRIPYLDPSFEAFVKIQ 193 (224)
T ss_pred ----HHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577788888888888862 3456899999999988888887777765543
No 4
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.62 E-value=5.4 Score=36.11 Aligned_cols=185 Identities=13% Similarity=0.130 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHHHHHHHHHHH-------
Q 044677 43 FCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARSAIGNFAA------- 115 (250)
Q Consensus 43 F~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v~~AIk~f~~------- 115 (250)
|..=-.--++|-..|..|-++.. |-- ...+. ..|.|..|..|...|..+- .+...=..|+.
T Consensus 28 ~kERa~IEkeYakkL~~L~kKy~-~kk----~~~~~-----~~~~~t~~~aw~~~l~e~~--~~A~~H~~~~~~L~~~v~ 95 (253)
T cd07676 28 VKERTEIELSYAKQLRNLSKKYQ-PKK----NSKEE-----EEYKYTSCRAFLMTLNEMN--DYAGQHEVISENLASQII 95 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hhc----ccccc-----ccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 33344567999999999999843 210 00011 2356788999997665432 11111122222
Q ss_pred -HHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhhhhcc--------ccccccccccccchHHHHHHHHHHH
Q 044677 116 -LINTIMHHQEEEMK-LKERCEETKKELSRKTRQFEDWYNKYITRRT--------QEELDADDTTLKDAVTERKFVVDVL 185 (250)
Q Consensus 116 -~v~~i~~~Q~eE~~-~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~--------~~~~~~~~~~~~~~~~ekk~~le~~ 185 (250)
-|..+......+++ .--....+.+++++....|+..-++|...-- ..-.+.+....+..+..=+..++..
T Consensus 96 ~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~ 175 (253)
T cd07676 96 VELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIR 175 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHH
Confidence 22222222222222 1112344566666666666654444432100 0000011111223333344455555
Q ss_pred HHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044677 186 KKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI 239 (250)
Q Consensus 186 rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~ 239 (250)
..-.+.-+..|...+..++...-.-....||.||+.|-+|-..-+....++...
T Consensus 176 ~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~ 229 (253)
T cd07676 176 HQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKT 229 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677888999999988877767888999999988887776666555554443
No 5
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=91.52 E-value=7.5 Score=32.64 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 044677 179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKN 238 (250)
Q Consensus 179 k~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~ 238 (250)
..+++..+...+.....+...+...-+.....|...|..++++...|...+.+.+++|..
T Consensus 167 ~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~ 226 (229)
T PF03114_consen 167 EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQP 226 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455566666666777777777777777666654
No 6
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=89.90 E-value=13 Score=32.78 Aligned_cols=60 Identities=17% Similarity=0.219 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHH
Q 044677 179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKN 238 (250)
Q Consensus 179 k~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~ 238 (250)
+..+.......+.-+..|..++..++..--.-....||.+|+.|..|=...+....++..
T Consensus 167 ~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~ 226 (251)
T cd07653 167 KANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLL 226 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344444455556677888888887765545556789999999887777666666555443
No 7
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=89.80 E-value=15 Score=33.37 Aligned_cols=148 Identities=13% Similarity=0.165 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhccC----------Ch---HHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhHHHH---
Q 044677 87 IQRLLLAWHDLLQKL----------PD---EIARSAIGNFAALINTIMHHQEEEMK-LKERCEETKKELSRKTRQFE--- 149 (250)
Q Consensus 87 If~lC~~W~~~ld~l----------p~---k~v~~AIk~f~~~v~~i~~~Q~eE~~-~k~k~e~~~Kelekk~~~l~--- 149 (250)
.|..|-.|..-|..+ .+ ..|+..|..++..+...-..+-.+.+ .+.-.+..-++++|=-+.++
T Consensus 61 ~~t~~~s~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~~~~leksKk~Y~~ac 140 (252)
T cd07675 61 RFTSCLSFYNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMCWKQMDNSKKKFEREC 140 (252)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466665555544 22 23556667787777776666643322 22222333333333222222
Q ss_pred ----HHHHHhhhhccccccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHH
Q 044677 150 ----DWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEI 225 (250)
Q Consensus 150 ----~~~~k~~~~~~~~~~~~~~~~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~F 225 (250)
...+++.. . +.+....+..+..=+..++....-.|+-+..|...+..++...-.--..-||.||+.|-+|
T Consensus 141 ke~E~A~~k~~k----a--~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~l 214 (252)
T cd07675 141 REAEKAQQSYER----L--DNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEM 214 (252)
T ss_pred HHHHHHHHHHHh----c--ccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 22222110 0 1111222333433344555555556778889999998887666666677799999999888
Q ss_pred HHHHHHHHHHHHHHh
Q 044677 226 SFACSGMYRDLKNIA 240 (250)
Q Consensus 226 s~~s~~~ye~l~~~~ 240 (250)
-..-+.-..++...+
T Consensus 215 eE~Ri~~l~e~~~~~ 229 (252)
T cd07675 215 DERRTVKLSECYRGF 229 (252)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766666665544
No 8
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=87.82 E-value=20 Score=32.14 Aligned_cols=202 Identities=10% Similarity=0.101 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhc
Q 044677 24 HHHERTIQLWAVVQEWNSQFCKLI----DHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQ 99 (250)
Q Consensus 24 ~h~~at~qLe~el~~W~~sF~~wi----~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld 99 (250)
..|.|.+.+-.-=..|-..+.+|+ ..-++|-+.|..=-+. + ..+ .+|. ..|.+.+|..|...|+
T Consensus 5 ~~h~~l~~~~~~ei~lLe~i~~F~reRa~iE~EYA~~L~~L~kq---~---~k~---~~~~---~~~~s~~~~sW~~iL~ 72 (237)
T cd07657 5 SGHEALLKRQDAELRLLETMKKYMAKRAKSDREYASTLGSLANQ---G---LKI---EAGD---DLQGSPISKSWKEIMD 72 (237)
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h---CcC---CCcc---cCCcChHHHHHHHHHH
Confidence 345555555554445555555554 5678999988754433 1 111 1222 2346677888999888
Q ss_pred cCChHH-------------HHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcc-cccc
Q 044677 100 KLPDEI-------------ARSAIGNFAALINTIMHHQEEEM-KLKERCEETKKELSRKTRQFEDWYNKYITRRT-QEEL 164 (250)
Q Consensus 100 ~lp~k~-------------v~~AIk~f~~~v~~i~~~Q~eE~-~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~-~~~~ 164 (250)
.+-+-. |.+.|..+......+..+..++. +.....+.+.+|++|-.+.++...+.+...+. -+..
T Consensus 73 ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a 152 (237)
T cd07657 73 STDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEA 152 (237)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643221 23345555666666655544442 23334445555666555555433222111100 0000
Q ss_pred ccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 044677 165 DADDTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLK 237 (250)
Q Consensus 165 ~~~~~~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~ 237 (250)
+.......-.+...+........++..-+..|.-++..++..--.-...-||.||+.|-++-......-.++.
T Consensus 153 ~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l 225 (237)
T cd07657 153 VVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKIL 225 (237)
T ss_pred HhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001112333334444444445566677777777777766677778899999999888777766655543
No 9
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.87 E-value=21 Score=31.48 Aligned_cols=181 Identities=12% Similarity=0.140 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCC---h
Q 044677 27 ERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLP---D 103 (250)
Q Consensus 27 ~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp---~ 103 (250)
+..-.||.-+...|..|..++...+.+-.+.-.--+-+..=-+. ..|++-.-...+...+.++. +
T Consensus 11 ~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~------------E~~~L~~~L~~lae~~~~i~d~~q 78 (211)
T cd07598 11 ERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADT------------ENPSLKQGLKNFAECLAALQDYRQ 78 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc------------cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999988876655532110000 13666666777777777666 2
Q ss_pred -------HHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccc
Q 044677 104 -------EIARSAIGNFAALINTIM-------HHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDT 169 (250)
Q Consensus 104 -------k~v~~AIk~f~~~v~~i~-------~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~ 169 (250)
..|++-|+.|...+.+.- ..|..+.+++. .+++...+. |.. .....
T Consensus 79 ~qv~~l~~~v~epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~--------------~leklk~~~-----~~d-~~~i~ 138 (211)
T cd07598 79 AEVERLEAKVVQPLALYGTICKHARDDLKNTFTARNKELKQLK--------------QLEKLRQKN-----PSD-RQIIS 138 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhcC-----Cch-hhHHH
Confidence 334555555555543322 12333333222 222221110 000 00000
Q ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 044677 170 TLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQHKNPS 246 (250)
Q Consensus 170 ~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~~~~~~~ 246 (250)
.....|..=+...+...+.+++|+.++.+. -+..|+..|.....++..|....++.|..+.....+-|..
T Consensus 139 eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~-------k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~~~~ 208 (211)
T cd07598 139 QAESELQKASVDANRSTKELEEQMDNFEKQ-------KIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQNIDEE 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 111122223334555566677777777522 3567999999999999999999999999988877765543
No 10
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=82.69 E-value=38 Score=30.88 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 044677 173 DAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRD 235 (250)
Q Consensus 173 ~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~ 235 (250)
..+..-+..++.++..++.-+..|..++..+... -..--.-+|.||+.+-.|=..=+.-+.+
T Consensus 168 ~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~-~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~ 229 (258)
T cd07680 168 EQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKT-TPQYMENMEQVFEQCQQFEEKRLVFLKE 229 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555678888888999999999999998766 5667788999999877665444444333
No 11
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=81.89 E-value=37 Score=30.12 Aligned_cols=203 Identities=12% Similarity=0.083 Sum_probs=103.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHh
Q 044677 19 KETSEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLL 98 (250)
Q Consensus 19 ~~tse~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~l 98 (250)
+...+.|+.....|-.-+...+.+=..++++++.|+.+|..-=.-|+-+.+.. ++ -.|.-+-.=...|
T Consensus 8 ee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~----------i~--~~l~kF~~~l~El 75 (215)
T cd07604 8 EESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEED----------LG--AAFLKFSVFTKEL 75 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHH----------HH--HHHHHHHHHHHHH
Confidence 44556777777777777777778888888888888888887322222111100 00 1122222222333
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHH
Q 044677 99 QKLPDEIARSAIGNFAALINTIMHHQEEEM--KLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVT 176 (250)
Q Consensus 99 d~lp~k~v~~AIk~f~~~v~~i~~~Q~eE~--~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 176 (250)
..+-+.-+..+-..+..-+.+++.-+-..- -.|+++|..++++|+....+++.-.+ +..+++...+.-...
T Consensus 76 ~~~~~~L~~~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~-------~~~~~~~~r~e~~~~ 148 (215)
T cd07604 76 AALFKNLMQNLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQ-------LAKEAGMIRTEITGA 148 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-------hhhhhhhcchhhhhh
Confidence 333344444444444455555554444331 24556666666666665544432111 000000000000012
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044677 177 ERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIA 240 (250)
Q Consensus 177 ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~ 240 (250)
+=...|+.-|+......-.|.-.+..+...---.+-..|...|+|...|-....++.+++.-..
T Consensus 149 e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 149 EIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344566666666666555554444444333333444566777777777777777777765443
No 12
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=81.15 E-value=39 Score=29.98 Aligned_cols=179 Identities=15% Similarity=0.223 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccc--------ccC------CCCCCCCCCCChHHHHHHH
Q 044677 29 TIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPI-ESS--------LRE------KVSSPPRIQTPPIQRLLLA 93 (250)
Q Consensus 29 t~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~-e~~--------~~~------~~~sP~r~~aPpIf~lC~~ 93 (250)
-.+||.++..++....+.+.+=..||+ ||.+-. |. +.. ++. .-+.|.-. --.....|.+
T Consensus 9 f~~le~~~d~~~~~~~~l~~~~~~y~~----~l~k~~-~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~-~G~aL~~~G~ 82 (215)
T cd07593 9 FLELEKEIELRKEGMERLHRSTEAYVE----YLSKKK-PLLDDKDKCLPVEALGLVMINHGEEFPQDSE-YGSCLSKLGR 82 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccC-ccccccccCChHHHHHHHHHHHHhhCCCCCh-HHHHHHHHHH
Confidence 568999999999999999999999998 555422 21 100 000 00111100 0123345555
Q ss_pred HHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcccccccccccccc
Q 044677 94 WHDLLQKLPDEIARSAIGNFAALINTIMHHQEEE-MKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLK 172 (250)
Q Consensus 94 W~~~ld~lp~k~v~~AIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~ 172 (250)
=...|..+-+.=+..+-.+|...|+.... +..+ ++.|+|++. +...++..-.++-..+..
T Consensus 83 a~~kia~~q~~f~~~~~~~~l~pL~~~l~-~~k~i~k~RKkLe~-------rRLdyD~~ksk~~kak~~----------- 143 (215)
T cd07593 83 AHCKIGTLQEEFADRLSDTFLANIERSLA-EMKEYHSARKKLES-------RRLAYDAALTKSQKAKKE----------- 143 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcccc-----------
Confidence 55666666556566667777777776654 3333 334444444 444444333332111100
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhh-------chHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044677 173 DAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRN-------HLPELFKAMSEISFACSGMYRDLKNIAQH 242 (250)
Q Consensus 173 ~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~-------gL~~vF~aL~~Fs~~s~~~ye~l~~~~~~ 242 (250)
+ ..++..++....+|..+...+... +-++.. .|..+.+|-.+|=..|.+..++|...+-.
T Consensus 144 ~---------~~~eeElr~Ae~kfees~E~a~~~-M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~~ 210 (215)
T cd07593 144 D---------SRLEEELRRAKAKYEESSEDVEAR-MVAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQSWPS 210 (215)
T ss_pred c---------hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 0 112333444455555555555422 223333 47777778888888889998888877644
No 13
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=77.77 E-value=45 Score=28.75 Aligned_cols=184 Identities=13% Similarity=0.221 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccccccccCCCCCCCCCCCChHHHHHHHHHHHhccC
Q 044677 24 HHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLN--LIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKL 101 (250)
Q Consensus 24 ~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~--~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~l 101 (250)
..++-.-.||.-|...+..+..+++.++++..++..-=.-. +-..|.. +++-..|..-..+.+++
T Consensus 28 ~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~-------------~~l~~~l~~l~~~~~~~ 94 (236)
T PF09325_consen 28 EIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE-------------KSLSEALSQLAEAFEKI 94 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-------------chhHHHHHHHHHHHHHH
Confidence 34555788999999999999999999999999887654432 1122221 12222222222222222
Q ss_pred C----------hHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcccccccccc
Q 044677 102 P----------DEIARSAIGNF---AALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADD 168 (250)
Q Consensus 102 p----------~k~v~~AIk~f---~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~ 168 (250)
. .....+.|+.+ +.+|+.++.+-. +...-.+.+.+++.|+...+++.....
T Consensus 95 ~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~---~~~~~~~~a~~~l~kkk~~~~kl~~~~------------- 158 (236)
T PF09325_consen 95 SELLEEQANQEEETLGEPLREYLRYIESVKEALNRRD---KKLIEYQNAEKELQKKKAQLEKLKASG------------- 158 (236)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcccccc-------------
Confidence 1 11223334333 333444443322 223344567778888877776543321
Q ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HhcHhhhhhchHHHHHHHHHHHHHHHHHHHHH
Q 044677 169 TTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVR-------EKSLTSLRNHLPELFKAMSEISFACSGMYRDL 236 (250)
Q Consensus 169 ~~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r-------~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l 236 (250)
..+.+-+..-..+++.+.++++.-..+|......++ .--...|+..|-...+....+...++++++.+
T Consensus 159 ~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 159 KNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETF 233 (236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 011122333334444444444443333332222221 12344566666666666666666666666654
No 14
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=75.39 E-value=63 Score=29.19 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccc--cc--CCCCCCCCCC----------------------CChHHHHHH
Q 044677 39 WNSQFCKLIDHQKAYIKALNSWLKLNLIPIESS--LR--EKVSSPPRIQ----------------------TPPIQRLLL 92 (250)
Q Consensus 39 W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~--~~--~~~~sP~r~~----------------------aPpIf~lC~ 92 (250)
...||+.|=.. |..--+||.....|.+.. .. +.+..||+.. ..|+-....
T Consensus 35 ~~es~~~~~~~----~~~k~~~l~~~t~~~e~~~~l~~~~~~~~~pkTl~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~ 110 (242)
T cd07600 35 LTESISDFSKT----IGSKVSELSKATSPTEAQKVLLGTPAPAKLPKTLNHALSRAALASSLELKSLEPEDEDPLSKALG 110 (242)
T ss_pred chHHHHHHHHh----hHHHHHHHhhcCChhhhhhhhcCCCCCCCCCCcHHHHHHHHHHHHHHHhCccCCCCCCHHHHHHH
Confidence 34566666555 777788998866665543 11 1111222221 134444555
Q ss_pred HHHHHhccCCh---HHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHh
Q 044677 93 AWHDLLQKLPD---EIARSAIGNFAALINTIMHHQEEE-MKLKERCEETKKELSRKT 145 (250)
Q Consensus 93 ~W~~~ld~lp~---k~v~~AIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~Kelekk~ 145 (250)
.|..+..+|-+ .--....++|..-++.+...+-.+ ++.|+|++..+=+|+-..
T Consensus 111 ~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~k~i~k~RKkle~~RLd~D~~K 167 (242)
T cd07600 111 KYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSFQKAHKARKKVEDKRLQLDTAR 167 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655 333445677777788777766555 445555555444444433
No 15
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=72.99 E-value=68 Score=28.49 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044677 29 TIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNL 65 (250)
Q Consensus 29 t~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~ 65 (250)
.-.|.........+...+..+||.|+.+|+.-=.-|+
T Consensus 18 IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~i 54 (207)
T cd07633 18 IKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFI 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4456666777778899999999999999998777665
No 16
>KOG4503 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=72.92 E-value=5.2 Score=35.56 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHHHhccCChHHH---HHHHHHHHHHHHHHH
Q 044677 83 QTPPIQRLLLAWHDLLQKLPDEIA---RSAIGNFAALINTIM 121 (250)
Q Consensus 83 ~aPpIf~lC~~W~~~ld~lp~k~v---~~AIk~f~~~v~~i~ 121 (250)
+.|.|+.+|..|.+.|++-.--.| .=+-+-|+.+|....
T Consensus 145 rvPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi 186 (230)
T KOG4503|consen 145 RVPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFI 186 (230)
T ss_pred CCccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999322211 123445555555554
No 17
>COG5085 Predicted membrane protein [Function unknown]
Probab=72.92 E-value=5.2 Score=35.56 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHHHhccCChHHH---HHHHHHHHHHHHHHH
Q 044677 83 QTPPIQRLLLAWHDLLQKLPDEIA---RSAIGNFAALINTIM 121 (250)
Q Consensus 83 ~aPpIf~lC~~W~~~ld~lp~k~v---~~AIk~f~~~v~~i~ 121 (250)
+.|.|+.+|..|.+.|++-.--.| .=+-+-|+.+|....
T Consensus 145 rvPAi~E~C~kwkqcm~~~~~~~vg~tkl~A~vFgdvIdaFi 186 (230)
T COG5085 145 RVPAIEELCSKWKQCMKNNGYRSVGYTKLIAEVFGDVIDAFI 186 (230)
T ss_pred CCccHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 369999999999999999322211 123445555555554
No 18
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=71.98 E-value=67 Score=28.00 Aligned_cols=187 Identities=13% Similarity=0.174 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccccccccCCCCCCCCCCCChHHHHHH-------H
Q 044677 23 EHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLN--LIPIESSLREKVSSPPRIQTPPIQRLLL-------A 93 (250)
Q Consensus 23 e~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~--~~p~e~~~~~~~~sP~r~~aPpIf~lC~-------~ 93 (250)
+.++.-.-+||.-|..-+.+-..+++.+++-..++..-=.-+ |.+.|. .|++-..+. .
T Consensus 7 ~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~-------------~~~l~~~l~~~a~~~~~ 73 (216)
T cd07627 7 IEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLEL-------------SKSLSDLLAALAEVQKR 73 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------------chHhHHHHHHHHHHHHH
Confidence 356777889999999999999999999999988887755432 223231 122222222 2
Q ss_pred HHHHhccCChHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcccccccccccc
Q 044677 94 WHDLLQKLPDEIARS---AIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTT 170 (250)
Q Consensus 94 W~~~ld~lp~k~v~~---AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~ 170 (250)
=...+.+..+.++.. .|+.++..+.++-.-=..-.+.....+.+.++|+|+...+++.... +.+
T Consensus 74 ~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~-------------~~s 140 (216)
T cd07627 74 IKESLERQALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQ-------------GKT 140 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CCC
Confidence 333444555555554 6666666555554333333455667788999999998888875421 111
Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHh--------hhhhchHHHHHHHHHHHHHHHHHHHHH
Q 044677 171 LKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLT--------SLRNHLPELFKAMSEISFACSGMYRDL 236 (250)
Q Consensus 171 ~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~--------~Lq~gL~~vF~aL~~Fs~~s~~~ye~l 236 (250)
+.+-+......|..+..+++.-..+|......++ .-+. .++..|-...+++..|...+.+.++..
T Consensus 141 ~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k-~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 141 QQEKLNSLLSELEEAERRASELKKEFEEVSELIK-SELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444555555555555555555543333322 2233 344445555555555555555544443
No 19
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=70.68 E-value=76 Score=28.10 Aligned_cols=118 Identities=12% Similarity=0.067 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHH
Q 044677 26 HERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEI 105 (250)
Q Consensus 26 ~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~ 105 (250)
.+....|.........+...+.++||.|+.+|+.-=.-|+--..+++.. ..++.+.=+.+=...|..--+.-
T Consensus 15 ~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~--------~I~~~L~kF~~~L~ei~~~r~~L 86 (207)
T cd07636 15 NKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEI--------CIARSLQEFAAVLRNLEDERTRM 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888889999999999999999877665321122110 01122222222222233323333
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 044677 106 ARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYIT 157 (250)
Q Consensus 106 v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~ 157 (250)
+..|-.++..-+..++.-+-. ++-...|.|+|-...++....|+.+
T Consensus 87 ~~qa~~~l~~~L~~F~kedi~------~~Ke~kK~FdK~se~~~~al~k~~~ 132 (207)
T cd07636 87 IENASEVLITPLEKFRKEQIG------AAKEAKKKYDKETEKYCAVLEKHLN 132 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHhhhHhhhhhHHHHHHHHHhc
Confidence 444444455555554433332 2346678888888888887777664
No 20
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=70.13 E-value=81 Score=28.17 Aligned_cols=198 Identities=10% Similarity=0.060 Sum_probs=104.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccC
Q 044677 22 SEHHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKL 101 (250)
Q Consensus 22 se~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~l 101 (250)
-|.-+-....+..-+..-+.+=..+|.+++.|+++|..-=..|+.+.+.. ..-.|.-+-.=..
T Consensus 11 l~~d~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~------------~~~~l~kf~~~~~----- 73 (215)
T cd07642 11 LDVDRTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPD------------LGSAFLKFSVFTK----- 73 (215)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHH------------HHHHHHHHHHHHH-----
Confidence 34445666778888888999999999999999999988666676432211 1123333333333
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHH-HHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccch-HHH
Q 044677 102 PDEIARSAIGNFAALINTIMHHQEEEMK--LKERC-EETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDA-VTE 177 (250)
Q Consensus 102 p~k~v~~AIk~f~~~v~~i~~~Q~eE~~--~k~k~-e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~-~~e 177 (250)
++..-.+.+...+..++..+-+-.- --+++ +.+.|.+||....++....|..+.+.......+ ....+. -.|
T Consensus 74 ---El~~l~~~L~~~~~~~I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~-~~~~e~~~~E 149 (215)
T cd07642 74 ---ELTALFKNLVQNMNNIITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHG-MIRTEISGAE 149 (215)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccc-cchhccchhh
Confidence 4444444445555544444443311 11223 345555555555555443332211100000000 000000 023
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044677 178 RKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIA 240 (250)
Q Consensus 178 kk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~ 240 (250)
--..|++-|+-...++-.|.-.+..+...---.|-..|...|+|-..|-..-++..++|....
T Consensus 150 ~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~ 212 (215)
T cd07642 150 IAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334566666666666666654444444433344445667777777777777777777765543
No 21
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=69.51 E-value=81 Score=27.94 Aligned_cols=40 Identities=8% Similarity=-0.090 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 044677 27 ERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLI 66 (250)
Q Consensus 27 ~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~ 66 (250)
+..-.|-........+...+.++|+.|+.+|+.-=.-|+-
T Consensus 16 ~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~ig 55 (207)
T cd07634 16 KFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIG 55 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3455677777888889999999999999999998776653
No 22
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.04 E-value=83 Score=27.47 Aligned_cols=153 Identities=10% Similarity=0.164 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChHHHHH
Q 044677 29 TIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDEIARS 108 (250)
Q Consensus 29 t~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k~v~~ 108 (250)
...|-......+.+...++++|+.|+.+|+.-=.-| ..|..+..
T Consensus 18 l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~------------------------------------~~d~~i~~ 61 (200)
T cd07603 18 LEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYF------------------------------------RDDSLVQN 61 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------------------------------CCcHHHHH
Confidence 344444555556666777777777777777322211 12234557
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH----------------HHHHHHHHHHHHHHhHHHHHHHHHhhhhcccccccccccccc
Q 044677 109 AIGNFAALINTIMHHQEEEMKL----------------KERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLK 172 (250)
Q Consensus 109 AIk~f~~~v~~i~~~Q~eE~~~----------------k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~ 172 (250)
+++.|+..+..||.....=..+ -+.+-.+.|.|||-...++....||.+-. ....
T Consensus 62 ~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k~~~~~---------K~K~ 132 (200)
T cd07603 62 CLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVKNAQAP---------RSKP 132 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccC---------CCCH
Confidence 7777877777777665433321 13355788888888888887777765321 1111
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhcHhhhhhch-HHHHHHHHHHHHHHHHHHHH
Q 044677 173 DAVTERKFVVDVLKKRLEEEEEAY-QRQCGAVREKSLTSLRNHL-PELFKAMSEISFACSGMYRD 235 (250)
Q Consensus 173 ~~~~ekk~~le~~rkrle~E~~~~-~~~~~~~r~~tl~~Lq~gL-~~vF~aL~~Fs~~s~~~ye~ 235 (250)
+.+.|= ...|..++..| +.+++.+- .++.+|+.= ..+++.|-+|-.+..--|..
T Consensus 133 ~~~~Ea-------~~~L~~~Rk~f~~~sldyv~--~in~iq~kKk~e~le~ll~~~~A~~tff~q 188 (200)
T cd07603 133 QEAEEA-------TNILTATRSCFRHTALDYVL--QINVLQAKKRHEILSTLLSYMHAQFTFFHQ 188 (200)
T ss_pred HHHHHH-------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222 23344444444 23444443 445555432 36777777777777665543
No 23
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=67.53 E-value=94 Score=27.93 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCCh-------------HHHHHH
Q 044677 43 FCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPD-------------EIARSA 109 (250)
Q Consensus 43 F~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~-------------k~v~~A 109 (250)
|..=..--+.|-+.|..|-++.....+ +.|..-.+...|...+...-. .+|.+.
T Consensus 28 ~kERa~IE~~Yak~L~kLakk~~~~~~-------------~~~e~gsl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~ 94 (258)
T cd07655 28 VQERAEIEKAYAKKLKEWAKKWRDLIE-------------KGPEYGTLETAWKGLLSEAERLSELHLSIRDKLLNDVVEE 94 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc-------------cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444466789999999999987431111 012222566777665543211 234455
Q ss_pred HHHHHHHH-HH-----HHHh----------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccc
Q 044677 110 IGNFAALI-NT-----IMHH----------QEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKD 173 (250)
Q Consensus 110 Ik~f~~~v-~~-----i~~~----------Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~ 173 (250)
|+.|.... |. +-+. |..-...-.+++.+.|.|+...+..+.....+...+. |+ .....
T Consensus 95 i~~~~~e~~~k~~~~~~ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~----d~--~~~~~ 168 (258)
T cd07655 95 VKTWQKENYHKSMMGGFKETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKS----DT--SLSPD 168 (258)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----Cc--cCCHH
Confidence 55554321 01 1000 0000111133555555555555555544433221110 00 01112
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHH
Q 044677 174 AVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRD 235 (250)
Q Consensus 174 ~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~ 235 (250)
.+..-+..++.....++.-+..|..++..+.... .....-+|.+|+.+-.|=..=+....+
T Consensus 169 eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~-~~y~~~m~~~~~~~Q~lEe~Ri~~lk~ 229 (258)
T cd07655 169 QVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYN-PRYMEDMEQVFDKCQEFEEKRLDFFKE 229 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344566666667788899999999998877 568888999999887765554444443
No 24
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.37 E-value=93 Score=27.79 Aligned_cols=181 Identities=14% Similarity=0.182 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCCh
Q 044677 24 HHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPD 103 (250)
Q Consensus 24 ~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~ 103 (250)
.+-..-..||.+..+.+--+ |.|+.|+++=+.-. .|+-..... .|.-.+.|....+|++|...++.|.+
T Consensus 15 ~~~~rf~~lE~~~~kL~Ke~-------K~Y~dav~~m~~a~-~~is~~l~~---~~~~~~~~~~~~~~e~y~~~~~~l~~ 83 (225)
T cd07590 15 REVQKLQQLESTTKKLYKDM-------KKYIEAVLALSKAE-QRLSQDLAS---GPLCEDNDELRNLVEALDSVTTQLDK 83 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-hHHHHHHHh---cccCCCChHHHHHHHHHHHHHHHHHH
Confidence 34444455555555444444 45555555554321 222111100 11112346677899999988876653
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccc
Q 044677 104 ----------EIARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKD 173 (250)
Q Consensus 104 ----------k~v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~ 173 (250)
+-|++-|+.|.+.+-.|=.. .++| +..--|+++-...+++...| +. .+
T Consensus 84 ~~~~~~~~~~~~vl~Pl~~~~s~f~~I~~~------I~KR-~~Kl~DYD~~r~~~~kl~~K------~~---------k~ 141 (225)
T cd07590 84 TVQELVNLIQKTFIEPLKRLRSVFPSVNAA------IKRR-EQSLQEYERLQAKVEKLAEK------EK---------TG 141 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HhHHHHHHHHHHHHHHHHhC------cc---------CC
Confidence 24677788888777766322 2222 33345566655555544332 10 01
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044677 174 AVTERKFVVDVLKKRLEEEEEAYQRQCGAV-------REKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIA 240 (250)
Q Consensus 174 ~~~ekk~~le~~rkrle~E~~~~~~~~~~~-------r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~ 240 (250)
.+..+|...++.++.-+..|....... -++...-+..+|..+|-+=..|....-+.|.+|...-
T Consensus 142 ---~~~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~ 212 (225)
T cd07590 142 ---PNLAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNL 212 (225)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 113456666666666666665332211 1122333333444444444566666666666665443
No 25
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.52 E-value=90 Score=27.32 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhHHHHHHH----------------HHHHHHHHHHHHHhHHHHHHHHHhh
Q 044677 102 PDEIARSAIGNFAALINTIMHHQEEEMKLK----------------ERCEETKKELSRKTRQFEDWYNKYI 156 (250)
Q Consensus 102 p~k~v~~AIk~f~~~v~~i~~~Q~eE~~~k----------------~k~e~~~Kelekk~~~l~~~~~k~~ 156 (250)
.|..+.++++.|+..+..||..+..=..+- +.+-.+.|.|||-...++....|+.
T Consensus 55 gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~ 125 (200)
T cd07637 55 KDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNA 125 (200)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455688999999999999988766543221 2344677777777777776665544
No 26
>smart00721 BAR BAR domain.
Probab=64.26 E-value=92 Score=26.64 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhcccccc---cccCCCCCCCCCCCChHHHHHHHHHHHhccC-
Q 044677 29 TIQLWAVVQEWNSQFCKLIDHQKAYI---KALNSWLKLNLIPIES---SLREKVSSPPRIQTPPIQRLLLAWHDLLQKL- 101 (250)
Q Consensus 29 t~qLe~el~~W~~sF~~wi~~Qk~YV---~aLn~WL~~~~~p~e~---~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~l- 101 (250)
-.+||..+........++++.=+.|+ .++..=+.-...+.+. -.......+......++...+.....++.++
T Consensus 29 f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 108 (239)
T smart00721 29 FEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALKKLL 108 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHHHHH
Confidence 34677777777777777777777777 4443332211101000 0000000011112334554555444444433
Q ss_pred --ChHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHHHH
Q 044677 102 --PDEIARSAIGNFAALINTIMHHQEEEMK-LKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTER 178 (250)
Q Consensus 102 --p~k~v~~AIk~f~~~v~~i~~~Q~eE~~-~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ek 178 (250)
+..- ......|...+..++..+-.+.+ .++|.+...=||++....+.....+ +. ....+.+.+-
T Consensus 109 ~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~------~~------~~~~~kl~~~ 175 (239)
T smart00721 109 QVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKS------KE------KKKDEKLAKA 175 (239)
T ss_pred hhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh------cc------CChhhhhhhH
Confidence 3334 55566777777777765555433 3334444444444444333332211 00 0000012222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044677 179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI 239 (250)
Q Consensus 179 k~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~ 239 (250)
..+++..+...+.-...+...+...-+.....+...|-.++.+-..|...+.+.+++|...
T Consensus 176 e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~ 236 (239)
T smart00721 176 EEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQ 236 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333233333333333334444466667777777777877777777776543
No 27
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=60.95 E-value=1.2e+02 Score=26.83 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhc---cCCh--HHHHHHHHHHHHH
Q 044677 42 QFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQ---KLPD--EIARSAIGNFAAL 116 (250)
Q Consensus 42 sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld---~lp~--k~v~~AIk~f~~~ 116 (250)
-|..=...-++|.+.|..|-++.. | .+..-.+...|...+. .+.+ ..+...|...+..
T Consensus 27 f~keRa~iE~eYak~L~kLak~~~-~----------------~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~ 89 (239)
T cd07647 27 FLKQRAKAEEDYGKALLKLSKSAG-P----------------GDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEAEK 89 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC-C----------------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445678999999999987631 1 0111245555655443 3322 2344556665555
Q ss_pred HHHHHHhhHHHHHH---------------HHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHHHHHHH
Q 044677 117 INTIMHHQEEEMKL---------------KERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFV 181 (250)
Q Consensus 117 v~~i~~~Q~eE~~~---------------k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ekk~~ 181 (250)
|..+...+.++.+. -..++.+.+.|+.+.+.++...+.+..... + .....+..-+..
T Consensus 90 l~~~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~-------~-~~~ke~eK~~~K 161 (239)
T cd07647 90 LEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSS-------G-AQPKEAEKLKKK 161 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------C-CCHHHHHHHHHH
Confidence 55554444433210 123444445555555555544444321110 0 011112222223
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHH
Q 044677 182 VDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMS 223 (250)
Q Consensus 182 le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~ 223 (250)
+...+..++.-...|..+|......... ...-+|.+|+.+-
T Consensus 162 ~~k~~~~~~~a~~~Y~~~v~~l~~~~~~-~~~~~~~~~~~~Q 202 (239)
T cd07647 162 AAQCKTSAEEADSAYKSSIGCLEDARVE-WESEHATACQVFQ 202 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 3333333455677888888777665533 6666666555443
No 28
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=59.28 E-value=91 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=13.8
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHH
Q 044677 210 SLRNHLPELFKAMSEISFACSGMYRDL 236 (250)
Q Consensus 210 ~Lq~gL~~vF~aL~~Fs~~s~~~ye~l 236 (250)
.+...|..++++...|...+.+..++|
T Consensus 165 ~~~~~L~~~~~~q~~~~~~~~~~~~~l 191 (194)
T cd07307 165 LFLSLLLSFIEAQSEFFKEVLKILEQL 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 344455555555555555555554443
No 29
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=59.04 E-value=1.5e+02 Score=27.27 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChH-------HHHHHH-H-----
Q 044677 45 KLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDE-------IARSAI-G----- 111 (250)
Q Consensus 45 ~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k-------~v~~AI-k----- 111 (250)
+=|..=|.-+..++.=|.-|+.|....+..+..+ . =|-+.|-.--...-..||++ ++..+| +
T Consensus 22 krvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~k--K---lpe~~Ls~~M~es~keLg~dS~lg~aLe~~~~~e~~LA~~ 96 (257)
T cd07620 22 QRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMK--K---LPLMALSISMAESFKDFDAESSIRRVLEMCCFMQNMLANI 96 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhh--h---ccHhHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666777753322211111 1 16677777777777777765 444455 3
Q ss_pred ----------HHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcc---ccccccccccccchHHH
Q 044677 112 ----------NFAALINTIMHHQEEE-MKLKERCEETKKELSRKTRQFEDWYNKYITRRT---QEELDADDTTLKDAVTE 177 (250)
Q Consensus 112 ----------~f~~~v~~i~~~Q~eE-~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~---~~~~~~~~~~~~~~~~e 177 (250)
+|+.=++.|.+..--+ +++|+|++.+.=|++-+-+........ .+... ++.+......+..-+.-
T Consensus 97 l~~~E~~Ve~~vl~PL~~L~e~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~-s~~~~~~~~~~~~~~~~~~~~K~~~ 175 (257)
T cd07620 97 LADFEMKVEKDVLQPLNKLSEEDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGR-SPRSGGRSEEVGEHQGIRRANKGEP 175 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhcc-ccCCccccccccccccccccccccc
Confidence 3333333333333222 345555555555555443322111100 00000 00000000001111111
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044677 178 RKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQH 242 (250)
Q Consensus 178 kk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~~~ 242 (250)
-+.+++-...++|+.+..|...+...-+.- ...=.-|..++++..+|=..+++.++.+.-..+.
T Consensus 176 lkeE~eea~~K~E~~kd~~~a~Mynfl~kE-~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 176 LKEEEEECWRKLEQCKDQYSADLYHFATKE-DSYANYFIRLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 255666667777777666654443222111 1233457889999999999999999998877664
No 30
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=57.67 E-value=32 Score=28.15 Aligned_cols=39 Identities=26% Similarity=0.563 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHhccCChHHHHH---HHHHHHHHHHHHHH
Q 044677 84 TPPIQRLLLAWHDLLQKLPDEIARS---AIGNFAALINTIMH 122 (250)
Q Consensus 84 aPpIf~lC~~W~~~ld~lp~k~v~~---AIk~f~~~v~~i~~ 122 (250)
.|.+-..|++|...|.+=|+..... ..+.|+..++++++
T Consensus 65 vPALe~~C~~We~CMn~Dp~~~~~~~~l~ae~laeiiN~Fie 106 (135)
T PF10104_consen 65 VPALEEQCDEWEKCMNRDPDSIGRSSILSAETLAEIINSFIE 106 (135)
T ss_pred CcHHHHHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999877665332 45778888887774
No 31
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=55.77 E-value=1.8e+02 Score=27.30 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 044677 102 PDEIARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNK 154 (250)
Q Consensus 102 p~k~v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k 154 (250)
.+.+......+.++.+..|+.=-..=...=+-.|.++.++|||.+.|++.+.+
T Consensus 72 ~~~~~~~~~gshssTLdkLyaWEKKLY~EVKa~E~~r~~yeKK~~~Lr~~d~k 124 (312)
T PF04782_consen 72 FDEEECMGSGSHSSTLDKLYAWEKKLYDEVKAEEKLRIEYEKKCKQLRKQDAK 124 (312)
T ss_pred cCcccCcccchHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhC
Confidence 34444455677777777776422211112223467899999999999987665
No 32
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=54.78 E-value=2.1e+02 Score=29.04 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q 044677 41 SQFCKLIDHQKAYIKALNSWLKLNLIPIESS 71 (250)
Q Consensus 41 ~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~ 71 (250)
.-+.+++.+-|+|++.|-+=|.-.++|..++
T Consensus 104 vVLk~~lesEkey~~eLq~lL~t~L~Plq~s 134 (661)
T KOG2070|consen 104 VVLKNILESEKEYSKELQTLLSTYLRPLQTS 134 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3456899999999999999999888886544
No 33
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=54.00 E-value=1.6e+02 Score=26.11 Aligned_cols=38 Identities=11% Similarity=-0.003 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044677 28 RTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNL 65 (250)
Q Consensus 28 at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~ 65 (250)
....|-........+...+.++||.|+.+|+.-=.-|+
T Consensus 17 ~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~ 54 (207)
T cd07635 17 FIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFI 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34556666677778888999999999999998777664
No 34
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.80 E-value=1.3e+02 Score=25.10 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cccccccccCCCCCCCCCCCChHHHHHHHHHHHhccC
Q 044677 24 HHHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLN--LIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKL 101 (250)
Q Consensus 24 ~h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~--~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~l 101 (250)
..+.-+..|+.-+...+..+..+++.+++...++..-=.-+ +-..+.... +.+-..+.....+++.+
T Consensus 8 ~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~-----------~~l~~~~~~~~~~~~~~ 76 (218)
T cd07596 8 EAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVG-----------GELGEALSKLGKAAEEL 76 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-----------hhhHHHHHHHHHHHHHH
Confidence 34667888999999999999999999888777655433311 111111100 11222222222222221
Q ss_pred -------Ch------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 044677 102 -------PD------EIARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYN 153 (250)
Q Consensus 102 -------p~------k~v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~ 153 (250)
+. -+.+.-.-.|+.+|+.++..... .....+.+.+.+.++...+++...
T Consensus 77 ~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~~~kl~~ 138 (218)
T cd07596 77 SSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRAD---ALLTLQSLKKDLASKKAQLEKLKA 138 (218)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 12223344556666676666553 334456788888888888877654
No 35
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=50.17 E-value=1.7e+02 Score=25.43 Aligned_cols=102 Identities=13% Similarity=0.145 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHh
Q 044677 130 LKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLT 209 (250)
Q Consensus 130 ~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~ 209 (250)
..........+|+++.+.+......+...=-|.=+. -....+|+.+-.+=+.-...+...+...+..-+.
T Consensus 86 ~~~~~~~i~~~f~~~~~~~~~~k~~h~~~LrP~Lgh----------P~~~~eL~~L~~~E~~R~~~~~~~I~~~~~~l~~ 155 (208)
T PF14644_consen 86 LCEAMKAIQEEFEQQQKQWEQQKDQHEQQLRPNLGH----------PDNRQELESLCEREEKRQKEHQEAIQNFWEKLLE 155 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667777777766555543321121101 1234566666666555556677777777877888
Q ss_pred hhhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044677 210 SLRNHLPELFKAMSEISFACSGMYRDLKNIAQ 241 (250)
Q Consensus 210 ~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~~ 241 (250)
+....-..++.+|..|+...+.-|.++.+.-.
T Consensus 156 ~~~~~a~~f~~~l~~~~~~ll~~lD~~vt~dD 187 (208)
T PF14644_consen 156 EVRKEAQMFVARLAQFTEKLLLLLDEVVTPDD 187 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 88888888888999999998888887766543
No 36
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.91 E-value=2.1e+02 Score=25.98 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHHHHHHHHHHHHH
Q 044677 108 SAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVDVLKK 187 (250)
Q Consensus 108 ~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ekk~~le~~rk 187 (250)
..+.+.+.-.+.|-..|.|+.+.+.-+..+.-++.+...-+++.+...+ ++ ...+...+.++|.+++
T Consensus 41 ~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~--~i-----------eqeik~~q~elEvl~~ 107 (246)
T KOG4657|consen 41 RSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQM--GI-----------EQEIKATQSELEVLRR 107 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-----------HHHHHHHHHHHHHHHH
Confidence 3344444445577778888888888888888888777774444333221 11 1224445667777776
Q ss_pred h---hHHHHHHHHHHHHHHH
Q 044677 188 R---LEEEEEAYQRQCGAVR 204 (250)
Q Consensus 188 r---le~E~~~~~~~~~~~r 204 (250)
. +++|+..+...+..-|
T Consensus 108 n~Q~lkeE~dd~keiIs~kr 127 (246)
T KOG4657|consen 108 NLQLLKEEKDDSKEIISQKR 127 (246)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 5 5667777666665555
No 37
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=48.83 E-value=1.9e+02 Score=25.55 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 044677 27 ERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNL 65 (250)
Q Consensus 27 ~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~ 65 (250)
+....|-........+...+.++|+.|+.+|+.-=.-|+
T Consensus 16 ~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~ 54 (207)
T cd07602 16 KAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECI 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445667777777888888999999999999998777665
No 38
>PF01806 Paramyxo_P: Paramyxovirinae P phosphoprotein C-terminal region; InterPro: IPR002693 Sendai virus is a member of the Paramyxovirinae family. Its negative-sense ssRNA genome is packaged by the viral nucleoprotein (N) within a helical nucleocapsid. Paramyxovirinae use this N-RNA (nucleoprotein-RNA) complex as a template for both transcription and replication. During viral genome replication, the synthesis of viral RNA and its encapsidation by N are concomitant. Viral transcription and replication are carried out by viral RNA-dependent RNA polymerase, which consists of two proteins: L polymerase and phosphoprotein P. The L polymerase carries the enzyme activity. Phosphoprotein P binds the viral nucleocapsid, and positions the L polymerase on the template for transcription and replication formed by nucleoprotein-RNA (N-RNA) []. This entry represents phosphoprotein P from Sendai virus as well as from close family members. Phosphoprotein P, an indispensable subunit of the viral polymerase complex, is a modular protein organised into two moieties that are both functionally and structurally distinct: a well-conserved C-terminal moiety that contains all the regions required for transcription, and a poorly conserved, intrinsically unstructured N-terminal moiety that provides several additional functions required for replication. The N-terminal moiety is responsible for binding to newly synthesized free N(0) (nucleoprotein that has not yet bound RNA), in order to prevent the binding of N(0) to cellular RNA. The C-terminal moiety consists of an oligomerisation domain, an N-RNA (nucleoprotein-RNA)-binding domain and an L polymerase-binding domain [, ]. ; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0019079 viral genome replication; PDB: 1R4G_A 1EZJ_A.
Probab=47.73 E-value=78 Score=28.23 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccccccCCCCCCCCCCCChHHHHHH
Q 044677 25 HHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKL-NLIPIESSLREKVSSPPRIQTPPIQRLLL 92 (250)
Q Consensus 25 h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~-~~~p~e~~~~~~~~sP~r~~aPpIf~lC~ 92 (250)
.++...+|...+.....+...++..||+-..-|.+-|.- .++.+....+..+.+++| +|.||.=-.
T Consensus 71 ~q~~l~~ik~~~~~~~e~hrR~~E~QkEQ~Sli~s~iS~L~imTerGGK~d~~e~~~R--sp~i~tK~K 137 (248)
T PF01806_consen 71 IQQELKQIKEDLKKMDESHRRFIENQKEQNSLIMSNISNLKIMTERGGKKDQTESSTR--SPMIFTKTK 137 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG-SS--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeecccCCCCCCCCCCCC--Ccchhhhhh
Confidence 355678999999999999999999999988888887763 344432222333456666 688887543
No 39
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.15 E-value=2.4e+02 Score=24.78 Aligned_cols=32 Identities=9% Similarity=-0.007 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044677 29 TIQLWAVVQEWNSQFCKLIDHQKAYIKALNSW 60 (250)
Q Consensus 29 t~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~W 60 (250)
...|-.-......+...++++|+.|+.+|..-
T Consensus 18 l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f 49 (200)
T cd07639 18 LEKLVKLGSGMLEGGRHYCAASRAFVDGLCDL 49 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666667777777777777665
No 40
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.66 E-value=2.7e+02 Score=25.24 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHH
Q 044677 179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSE 224 (250)
Q Consensus 179 k~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~ 224 (250)
+..||.+..++.--...|..+++....... ....-+|.+|+.+-.
T Consensus 156 ~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~-~~~~~m~~~~~~~Q~ 200 (269)
T cd07673 156 QREIEKAAVKSKKATESYKLYVEKYALAKA-DFEQKMTETAQKFQD 200 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 455677777777777778888888776654 667778887775543
No 41
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=41.24 E-value=2.3e+02 Score=24.33 Aligned_cols=113 Identities=12% Similarity=0.207 Sum_probs=64.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccc
Q 044677 91 LLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEEMKLK-ERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDT 169 (250)
Q Consensus 91 C~~W~~~ld~lp~k~v~~AIk~f~~~v~~i~~~Q~eE~~~k-~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~ 169 (250)
|..+...+..+.+. ++..|...|+..+..-..+...- .-...+-+..++|.-.+++...+.
T Consensus 64 ~~~~~~~~~~~~~~----~~~e~~~~i~~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~-------------- 125 (195)
T cd07589 64 WERFRRVVRGISSK----ALPEFKSRVRKLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKK-------------- 125 (195)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHH--------------
Confidence 45555555544433 66677777776666655554321 111122222333333333333221
Q ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044677 170 TLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNI 239 (250)
Q Consensus 170 ~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~ 239 (250)
..+....+.+++.+..|. .-.+.|+.-||.+++.-..|-..|+.+|-.+...
T Consensus 126 ----------~k~~k~e~~l~~a~~~y~--------~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~ 177 (195)
T cd07589 126 ----------ERGGKVDEELEEAANQYE--------ALNAQLKEELPKFNQLTAQLLETCLKSFVELQRD 177 (195)
T ss_pred ----------HhhcchHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112334455666666665 2346799999999999999999999888766543
No 42
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=39.58 E-value=1.7e+02 Score=23.40 Aligned_cols=50 Identities=20% Similarity=0.362 Sum_probs=34.1
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044677 99 QKLPDEIARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFED 150 (250)
Q Consensus 99 d~lp~k~v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~ 150 (250)
-.+|+++-.+|..-+-.++..=-..-.|-+++.+|...+ ..||+++.|+.
T Consensus 30 ~~~~~kd~~ea~~F~~kV~~qH~~~~~e~r~L~kKi~~l--~veRkmr~Les 79 (109)
T PF11690_consen 30 RHLPSKDKKEAYDFIDKVVDQHQRYCDERRKLRKKIQDL--RVERKMRALES 79 (109)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhccC
Confidence 688999999998877777665544455555555555544 44788887763
No 43
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=39.05 E-value=2.9e+02 Score=24.75 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHH
Q 044677 88 QRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEE-MKLKERCEETKKELSRKTRQF 148 (250)
Q Consensus 88 f~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~Kelekk~~~l 148 (250)
...|.+=...|..+-+.-+..+-.+|..-++.+...+..+ ++.|+|++.-+=||+-+.+.+
T Consensus 95 L~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~D~~K~r~ 156 (220)
T cd07617 95 LIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARL 156 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555556666677788999999999887755 556777776666666655544
No 44
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.26 E-value=2.8e+02 Score=24.37 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044677 29 TIQLWAVVQEWNSQFCKLIDHQKAYIKAL 57 (250)
Q Consensus 29 t~qLe~el~~W~~sF~~wi~~Qk~YV~aL 57 (250)
+-.||..+....-.-..+|.+++.|+.|.
T Consensus 11 ~~~Le~~l~Kl~K~~~~~~dag~~~~~a~ 39 (200)
T cd07638 11 VAELELKLDKLVKLCIGMIDAGKAFCQAN 39 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34566666665555555555555555443
No 45
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=37.82 E-value=91 Score=22.86 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 044677 87 IQRLLLAWHDLLQKLPDEIARSAIGNFAA 115 (250)
Q Consensus 87 If~lC~~W~~~ld~lp~k~v~~AIk~f~~ 115 (250)
.-..++-|+..|...|-+.|..|++.++.
T Consensus 29 ~k~~v~~W~~~L~d~~ye~v~~al~~~i~ 57 (71)
T PF11417_consen 29 SKETVDLWYDMLKDYDYEIVMKALKKHIA 57 (71)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34689999999999999999999998874
No 46
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=36.80 E-value=2.9e+02 Score=24.18 Aligned_cols=116 Identities=9% Similarity=0.214 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCChH
Q 044677 25 HHERTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLPDE 104 (250)
Q Consensus 25 h~~at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp~k 104 (250)
=+..+.+|-.....|..+...+.++++.|+.+|..-=. .+++.. .+ -+|+|++-. +-.=.+.|...-+.
T Consensus 13 l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~------~~dD~~--~~--a~gg~~l~k-F~~~l~ei~~~~~~ 81 (202)
T cd07606 13 LRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGG------GHDDPI--SV--AVGGPVMTK-FTSALREIGSYKEV 81 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCChH--HH--hccchHHHH-HHHHHHHHHHHHHH
Confidence 34567777777888888888888888888888876521 111100 00 012233222 22222223322333
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 044677 105 IARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYIT 157 (250)
Q Consensus 105 ~v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~ 157 (250)
-...+=..+..-+..++.-+-.+ +-.+.|.|+|-...++....|+.+
T Consensus 82 L~~q~~~~l~~pL~~F~k~Dl~~------vKe~kK~FdK~s~~yd~al~K~~~ 128 (202)
T cd07606 82 LRSQVEHMLNDRLAQFADTDLQE------VKDARRRFDKASLDYEQARSKFLS 128 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444333322 235677888888888777666653
No 47
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=35.41 E-value=3.3e+02 Score=24.39 Aligned_cols=142 Identities=13% Similarity=0.133 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhc---cCC--hHHHHHHHHHH
Q 044677 39 WNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQ---KLP--DEIARSAIGNF 113 (250)
Q Consensus 39 W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld---~lp--~k~v~~AIk~f 113 (250)
....|..=+..-+.|-+.|..|-++.. | ...+..+...|...+. ++. -..+.+.|.+-
T Consensus 24 l~~f~keRa~iE~~Yak~L~kl~kk~~-~----------------~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~ 86 (242)
T cd07671 24 VEELLKQRAQAEERYGKELVQIARKAG-G----------------QTEINTLKASFDQLKQQIENIGNSHIQLAGMLREE 86 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc-C----------------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667888999999999999743 1 1223577888876653 332 22455556665
Q ss_pred HHHHHHHHHhhHHHHH---------------HHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHHHH
Q 044677 114 AALINTIMHHQEEEMK---------------LKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTER 178 (250)
Q Consensus 114 ~~~v~~i~~~Q~eE~~---------------~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ek 178 (250)
+..|..+..-|.++.+ +-++++...+.|+...+..+...+.+.... .......+..-
T Consensus 87 ~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~--------~~~t~keleK~ 158 (242)
T cd07671 87 LKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSS--------STGNPKQSEKS 158 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------ccCCHHHHHHH
Confidence 5446666666665433 123445555666666655554432211000 01111234455
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 044677 179 KFVVDVLKKRLEEEEEAYQRQCGAVRE 205 (250)
Q Consensus 179 k~~le~~rkrle~E~~~~~~~~~~~r~ 205 (250)
+..+...+..++.....|..+|.....
T Consensus 159 ~~K~~k~~~~~~~a~~~Y~~~v~~l~~ 185 (242)
T cd07671 159 QNKAKQCRDAATEAERVYKQNIEQLDK 185 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666777788888877775543
No 48
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=34.19 E-value=5.8e+02 Score=26.89 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHh-HHHHHHHHHhhhh----ccccccccccccccchHHHHHHHHHHH
Q 044677 112 NFAALINTIMHHQEEEMKLKE-RCEETKKELSRKT-RQFEDWYNKYITR----RTQEELDADDTTLKDAVTERKFVVDVL 185 (250)
Q Consensus 112 ~f~~~v~~i~~~Q~eE~~~k~-k~e~~~Kelekk~-~~l~~~~~k~~~~----~~~~~~~~~~~~~~~~~~ekk~~le~~ 185 (250)
.=+.++.+|+.-|++|.-.|. ..|.+.+|+.+|. ..|..|..|+..- +.. ....++.+..-+..+-.|
T Consensus 270 VRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQLkaQ------eleh~~~~~qL~~qVAsL 343 (739)
T PF07111_consen 270 VRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQLKAQ------ELEHRDSVKQLRGQVASL 343 (739)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhHH------HHHhhhHHHHHHHHHHHH
Confidence 345677889999999998887 5899999999998 5557888776321 111 122334444445555555
Q ss_pred HHhhHHHHHHH---HHHH------HHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044677 186 KKRLEEEEEAY---QRQC------GAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIA 240 (250)
Q Consensus 186 rkrle~E~~~~---~~~~------~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~ 240 (250)
.+.|..+.... ..+. -.+..+...+||.-|...+++......-+..+-+.|...+
T Consensus 344 Qeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~ 407 (739)
T PF07111_consen 344 QEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVS 407 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543322111 1111 1223355567888888888777765555555555544443
No 49
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.18 E-value=2.9e+02 Score=24.93 Aligned_cols=84 Identities=12% Similarity=0.228 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccccccccchHHHHHHHHH
Q 044677 104 EIARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADDTTLKDAVTERKFVVD 183 (250)
Q Consensus 104 k~v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~~~~~~~~~ekk~~le 183 (250)
+-|.++|..|=..-..+.. ..-..||.|.| -||-|.++.|++..... ....++ +.+-+ +..|.
T Consensus 15 Kkv~EG~~~F~~i~~K~~~--~~n~~QKEK~E---~DLKkEIKKLQR~RdQI-K~W~~~----------~diKd-k~~L~ 77 (233)
T PF04065_consen 15 KKVQEGVEEFDEIYEKVES--ATNQNQKEKLE---ADLKKEIKKLQRLRDQI-KTWLSS----------NDIKD-KKKLL 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHc--ccCcchHHHHH---HHHHHHHHHHHHHHHHH-HHHccC----------ccccc-HHHHH
Confidence 4567777777665555544 23355666644 58888888887754332 111111 11222 34577
Q ss_pred HHHHhhHHHHHHHHHHHHHHH
Q 044677 184 VLKKRLEEEEEAYQRQCGAVR 204 (250)
Q Consensus 184 ~~rkrle~E~~~~~~~~~~~r 204 (250)
-.|+.+|..|++|...=..+.
T Consensus 78 e~Rk~IE~~MErFK~vEkesK 98 (233)
T PF04065_consen 78 ENRKLIEEQMERFKVVEKESK 98 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888899999999965444443
No 50
>PRK14153 heat shock protein GrpE; Provisional
Probab=31.79 E-value=3.1e+02 Score=24.03 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=17.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHH
Q 044677 180 FVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSE 224 (250)
Q Consensus 180 ~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~ 224 (250)
+..+-+|+|.+.|+... +..+..++-..|-+|+..|..
T Consensus 61 AEfeN~rKR~~kE~e~~-------~~~a~~~~~~~LLpv~DnLer 98 (194)
T PRK14153 61 AEFDNFRKRTAREMEEN-------RKFVLEQVLLDLLEVTDNFER 98 (194)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHhHHHH
Confidence 34455555555443332 233444444555555554433
No 51
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=31.05 E-value=6.4e+02 Score=26.45 Aligned_cols=21 Identities=10% Similarity=0.374 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 044677 130 LKERCEETKKELSRKTRQFED 150 (250)
Q Consensus 130 ~k~k~e~~~Kelekk~~~l~~ 150 (250)
.++|+..+..++++.+..+.+
T Consensus 563 i~~rv~~Lk~~~e~Ql~~L~~ 583 (717)
T PF10168_consen 563 IQRRVKLLKQQKEQQLKELQE 583 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444
No 52
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=30.99 E-value=3.9e+02 Score=23.91 Aligned_cols=179 Identities=12% Similarity=0.100 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHHHHHHhccCC--hHHHHHHHHHH
Q 044677 36 VQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLAWHDLLQKLP--DEIARSAIGNF 113 (250)
Q Consensus 36 l~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~W~~~ld~lp--~k~v~~AIk~f 113 (250)
+..-+.+=..+|.+++.||.+|..-=..|+.+.+ |.|- .++.++. -+++..-.+.+
T Consensus 25 ~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd---------------~~i~-------~a~~kfs~~~~El~~~~k~L 82 (215)
T cd07641 25 VKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDN---------------PDLG-------TAFVKFSTLTKELSTLLKNL 82 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc---------------hhHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3344555566778888888888776666654322 1111 2233332 35677777777
Q ss_pred HHHHHHHHHhhHHHHH--HHHHHH-HHHHHHHHHhHHHHHHHHHhhhhc----cccccccccccccchHHHHHHHHHHHH
Q 044677 114 AALINTIMHHQEEEMK--LKERCE-ETKKELSRKTRQFEDWYNKYITRR----TQEELDADDTTLKDAVTERKFVVDVLK 186 (250)
Q Consensus 114 ~~~v~~i~~~Q~eE~~--~k~k~e-~~~Kelekk~~~l~~~~~k~~~~~----~~~~~~~~~~~~~~~~~ekk~~le~~r 186 (250)
......|+..|-+-.- --+++- .+.|.|||=.+.++....|..+.+ .+.+ .......-.|--..++.-|
T Consensus 83 ~~~~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e----~~r~e~~~~Eaa~~l~~~R 158 (215)
T cd07641 83 LQGLSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHG----MIRTEITGAEIAEEMEKER 158 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCccc----chhccccchhHHHHHHHHH
Confidence 7777777776654321 011222 355555555555554444432211 0111 0000000012223344455
Q ss_pred HhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044677 187 KRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIA 240 (250)
Q Consensus 187 krle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~ 240 (250)
+-..-.+=.|.-.+.+....-=-.+--+|-..|+|-..|-....++.++|....
T Consensus 159 r~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~ 212 (215)
T cd07641 159 RLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYI 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 544444445554444443333223334677788888888888888777776554
No 53
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=29.48 E-value=4.5e+02 Score=28.33 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 044677 105 IARSAIGNFAALINTIMHHQEEEMKLKERCEE 136 (250)
Q Consensus 105 ~v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~ 136 (250)
.++.++..++..|.+--.||.+|+...+|.+.
T Consensus 900 ~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE 931 (1259)
T KOG0163|consen 900 VAVKNYEKLVKRLDSKEQQQIEELERLRKIQE 931 (1259)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 45556666777777766667777776666554
No 54
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=28.78 E-value=2e+02 Score=20.95 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=29.9
Q ss_pred hcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044677 206 KSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIA 240 (250)
Q Consensus 206 ~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~ 240 (250)
|.|..|-.|||.=+-.++.-+.....+|.+|-..-
T Consensus 27 m~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k 61 (71)
T COG5420 27 MELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAK 61 (71)
T ss_pred hhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999999999886543
No 55
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=27.87 E-value=4.4e+02 Score=23.56 Aligned_cols=127 Identities=11% Similarity=0.107 Sum_probs=70.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhccccccccc
Q 044677 89 RLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEE-MKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDAD 167 (250)
Q Consensus 89 ~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~ 167 (250)
..|.+=...|...-..-+..+=.+|..-++.+...+-.+ ++.|+|++..+=||+-+ ..+. .+.+
T Consensus 91 ~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~dik~i~k~RKkLe~rRLd~D~~-------K~r~--~k~~------ 155 (223)
T cd07613 91 GDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFDYK-------KKRQ--GKIP------ 155 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHhC--CCCc------
Confidence 344444444445455566677778888888887776655 44555555544444432 2221 1000
Q ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044677 168 DTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYRDLKNIAQH 242 (250)
Q Consensus 168 ~~~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye~l~~~~~~ 242 (250)
+.+|+....+.++-.+.....+..+-+.-...++ .|..+.+|-.+|=..|.+..++|...-+.
T Consensus 156 -----------eeElr~A~~kFees~E~a~~~M~n~l~~e~e~~~-~L~~fveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 156 -----------DEELRQALEKFDESKEIAESSMFNLLEMDIEQVS-QLSALVQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333333333333333333333233343 78899999999999999999999877653
No 56
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.58 E-value=5e+02 Score=26.84 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHhHHHH
Q 044677 106 ARSAIGNFAALINTIMHHQEEEMKLKERCEETKKE---LSRKTRQFE 149 (250)
Q Consensus 106 v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Ke---lekk~~~l~ 149 (250)
+.+-|+.+-..|.+...--..-...+.-...+.|+ |..++-.|.
T Consensus 565 i~~qik~lq~av~~~~~~~~q~~~s~e~~~~~dk~~e~l~~~ilklk 611 (772)
T KOG0999|consen 565 ISDQIKHLQKAVDHTKELSRQRIASQELGPAADKDKEALMEQILKLK 611 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHH
Confidence 44556666666665554433333333344455555 444444443
No 57
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=26.53 E-value=4e+02 Score=22.58 Aligned_cols=132 Identities=13% Similarity=0.154 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHhhhhccc
Q 044677 86 PIQRLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEEMKLKERCEETKKELS----RKTRQFEDWYNKYITRRTQ 161 (250)
Q Consensus 86 pIf~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i~~~Q~eE~~~k~k~e~~~Kele----kk~~~l~~~~~k~~~~~~~ 161 (250)
.||.|+..=....+++-.+ +.+--...+.+|...=.....+.+.+.|.-..+|+|+ ..++...+....+ +....
T Consensus 17 qIf~I~E~~R~E~~~l~~E-L~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~l-Q~~L~ 94 (159)
T PF05384_consen 17 QIFEIAEQARQEYERLRKE-LEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHEL-QVRLA 94 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHH-HHHHH
Confidence 6888888877777776432 2222223333333333445566777888888888883 3344333222221 11100
Q ss_pred cccccccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHH
Q 044677 162 EELDADDTTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEI 225 (250)
Q Consensus 162 ~~~~~~~~~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~F 225 (250)
. ....-..+-.|+..|+---+++.+-.++=...+..+. ++++-|.++|..|-+.+++.
T Consensus 95 ~-----~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~-vvl~yL~~dl~~v~~~~e~~ 152 (159)
T PF05384_consen 95 M-----LREREKQLRERRDELERRLRNLEETIERAENLVSQIG-VVLNYLSGDLQQVSEQIEDA 152 (159)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHH
Confidence 0 0111123555666666555555554444444555554 67899999999998887653
No 58
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=25.75 E-value=4.7e+02 Score=23.17 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=28.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHH
Q 044677 180 FVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAM 222 (250)
Q Consensus 180 ~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL 222 (250)
..++.++.+++.-...|..+|......... .-.-+|.+|+.+
T Consensus 150 k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~-~~~~m~~~~~~~ 191 (261)
T cd07648 150 KEIEKAEAKLKKAQDEYKALVEKYNNIRAD-FETKMTDSCKRF 191 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 345677777777777788888877665544 667777777543
No 59
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=23.82 E-value=5.3e+02 Score=23.06 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhcc--------ccccccc------CCCCCCCCCCCChHH
Q 044677 28 RTIQLWAVVQEWNSQFCKLIDHQKAYIKA-----LNSWLKLNLI--------PIESSLR------EKVSSPPRIQTPPIQ 88 (250)
Q Consensus 28 at~qLe~el~~W~~sF~~wi~~Qk~YV~a-----Ln~WL~~~~~--------p~e~~~~------~~~~sP~r~~aPpIf 88 (250)
--.+||.++..=+....+.++.=..||+- .-.|+...+. |.+ .+| ..-+.|.-.. -...
T Consensus 18 df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e-~Lg~~M~~~g~~lg~~S~~-g~aL 95 (229)
T cd07594 18 HFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLE-QLGQAMIEAGNDFGPGTAY-GSAL 95 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHH-HHHHHHHHHHhhCCCCCch-HHHH
Confidence 45678888888888888888777777761 1123322110 111 000 0011121111 1234
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHH
Q 044677 89 RLLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEE-MKLKERCEETKKELSRK 144 (250)
Q Consensus 89 ~lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~Kelekk 144 (250)
..|.+=...|..+-..-...+-.+|..-++.+.+.+..+ ++.|+|++..+=||+-.
T Consensus 96 ~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D~~ 152 (229)
T cd07594 96 IKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLDAC 152 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566556666677888888888888877655 34555555444444433
No 60
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=23.54 E-value=3.7e+02 Score=21.11 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=20.1
Q ss_pred cHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 044677 207 SLTSLRNHLPELFKAMSEISFACSGMYR 234 (250)
Q Consensus 207 tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye 234 (250)
+++++=..-+.||+++.-+|...++.-+
T Consensus 46 ~Va~Vl~NW~nV~r~Is~AS~~l~~~~~ 73 (103)
T PF08654_consen 46 AVASVLANWQNVFRAISMASLSLAKYSE 73 (103)
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhhccc
Confidence 3556667788999999888776655433
No 61
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=22.66 E-value=5.6e+02 Score=22.97 Aligned_cols=59 Identities=8% Similarity=0.109 Sum_probs=35.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHH
Q 044677 90 LLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEE-MKLKERCEETKKELSRKTRQF 148 (250)
Q Consensus 90 lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~Kelekk~~~l 148 (250)
.|.+=...|..+-..-+..+-.+|..-++.+.+.+..+ ++.|+|++..+=||+-+...+
T Consensus 97 ~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdyD~~K~r~ 156 (229)
T cd07616 97 KCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDLDAAKTRL 156 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555568999999999887765 456666666555555554433
No 62
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=22.51 E-value=2.1e+02 Score=25.25 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=37.1
Q ss_pred HHHHHHHHhccCChHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHH
Q 044677 90 LLLAWHDLLQKLPDEIAR---SAIGNFAALINTIMHHQEEEMKLKERCE-ETKKELSRKTRQFEDWYNK 154 (250)
Q Consensus 90 lC~~W~~~ld~lp~k~v~---~AIk~f~~~v~~i~~~Q~eE~~~k~k~e-~~~Kelekk~~~l~~~~~k 154 (250)
+|.=|-..|+.|-+..+. =+|+....++-=+-.||..+.....+.| .+.++||+..+.|+++.+|
T Consensus 134 l~sP~v~~l~el~~~gl~lsD~p~Hd~~Rdlvl~~~q~~a~~~l~~~le~~~~~~Le~~~~~l~~ek~k 202 (219)
T PF07701_consen 134 LGSPVVSSLEELRERGLYLSDLPLHDATRDLVLLGQQQSAELKLAKQLEQEKSAELEESMRELEEEKKK 202 (219)
T ss_dssp EEEE---TT-----------------EHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred EcccccCCHHHHHHcCCCccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333355555555444332 2567777777777888888888888888 8888888888888877665
No 63
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=21.27 E-value=6e+02 Score=22.75 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhHH
Q 044677 102 PDEIARSAIGNFAALINTIMHHQEE 126 (250)
Q Consensus 102 p~k~v~~AIk~f~~~v~~i~~~Q~e 126 (250)
+|+++.++++.|+..+..|..-+.+
T Consensus 59 ~D~~v~~sL~kFs~~L~el~~~h~~ 83 (215)
T cd07632 59 GDEEVISTLQYFAKVVDELNVLHSE 83 (215)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888889999999988888666554
No 64
>PRK14149 heat shock protein GrpE; Provisional
Probab=21.17 E-value=3e+02 Score=24.02 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHH
Q 044677 179 KFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSE 224 (250)
Q Consensus 179 k~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~ 224 (250)
.+.++-+|+|...|++.. +..+..++=..|-+|+..|..
T Consensus 63 ~AefEN~rKR~~kE~e~~-------~~~a~~~~~~~LLpVlDnLer 101 (191)
T PRK14149 63 HADFENVKKRLERDKSMA-------LEYAYEKIALDLLPVIDALLG 101 (191)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHhHHHH
Confidence 345666677766554443 344555666666666665543
No 65
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=20.56 E-value=5.9e+02 Score=22.40 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCCCCCCCCChHHHHHHH-HHHHhccCChHHH
Q 044677 28 RTIQLWAVVQEWNSQFCKLIDHQKAYIKALNSWLKLNLIPIESSLREKVSSPPRIQTPPIQRLLLA-WHDLLQKLPDEIA 106 (250)
Q Consensus 28 at~qLe~el~~W~~sF~~wi~~Qk~YV~aLn~WL~~~~~p~e~~~~~~~~sP~r~~aPpIf~lC~~-W~~~ld~lp~k~v 106 (250)
.|..|..++.....+.....++|+.+-++|.. .+.|.-. ++..--.|+..+.. |.+ ++..=.+.|
T Consensus 27 ~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~----lY~p~~~---------~~~~~~~v~e~~d~~~~~-l~~~l~~~V 92 (211)
T cd07588 27 SANRLQKDLKNYLNSVRAMKQASKTLSETLKE----LYEPDWP---------GREHLASIFEQLDLLWND-LEEKLSDQV 92 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCccc---------cHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 35566666666677777777777777777642 1223211 11111224444443 444 433336788
Q ss_pred HHHHHHHHHHHHHHHH
Q 044677 107 RSAIGNFAALINTIMH 122 (250)
Q Consensus 107 ~~AIk~f~~~v~~i~~ 122 (250)
++-|+.|.+.+..|-.
T Consensus 93 l~Pl~~~~s~f~~i~k 108 (211)
T cd07588 93 LGPLTAYQSQFPEVKK 108 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999988887753
No 66
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=20.46 E-value=6e+02 Score=22.44 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=38.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhcHhhhhhchHHHHHHHHHHHHHHHHHHH
Q 044677 184 VLKKRLEEEEEAYQRQCGAVREKSLTSLRNHLPELFKAMSEISFACSGMYR 234 (250)
Q Consensus 184 ~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~gL~~vF~aL~~Fs~~s~~~ye 234 (250)
.+..++++-...|...++.+..-=-.-+.+.+|.||..|-++-..|-.+..
T Consensus 169 ~~~~K~~~A~~~Y~~~v~~~n~~q~e~~~~~~p~i~~~lq~li~e~d~~l~ 219 (234)
T cd07652 169 ELLRKVQAADQDYASKVNAAQALRQELLSRHRPEAVKDLFDLILEIDAALR 219 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 556677888888988888766544455567899999999999888766643
No 67
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=20.43 E-value=6.2e+02 Score=22.59 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=60.6
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhcccccccccc
Q 044677 90 LLLAWHDLLQKLPDEIARSAIGNFAALINTIMHHQEEE-MKLKERCEETKKELSRKTRQFEDWYNKYITRRTQEELDADD 168 (250)
Q Consensus 90 lC~~W~~~ld~lp~k~v~~AIk~f~~~v~~i~~~Q~eE-~~~k~k~e~~~Kelekk~~~l~~~~~k~~~~~~~~~~~~~~ 168 (250)
.|.+=...|...-..-...+-.+|..-++.+.+.+-.+ ++.|+|++..+=||+-+ ..+. .+.++
T Consensus 92 ~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~dik~i~k~RKkLe~rRLdyD~~-------K~r~--~k~~e------ 156 (223)
T cd07614 92 DAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDLKEIQHHLKKLEGRRLDFDYK-------KKRQ--GKIPD------ 156 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHcC--CCCch------
Confidence 34444444444444455566677777777777666555 33455544444444332 2221 00000
Q ss_pred ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcHhhhhh-------chHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044677 169 TTLKDAVTERKFVVDVLKKRLEEEEEAYQRQCGAVREKSLTSLRN-------HLPELFKAMSEISFACSGMYRDLKNIAQ 241 (250)
Q Consensus 169 ~~~~~~~~ekk~~le~~rkrle~E~~~~~~~~~~~r~~tl~~Lq~-------gL~~vF~aL~~Fs~~s~~~ye~l~~~~~ 241 (250)
.+ +..++++|..+...+... +-++.. .|..+.+|-.+|=..|++..++|...-+
T Consensus 157 -------ee-----------lr~a~ekFees~E~a~~~-M~~il~~e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 157 -------EE-----------LRQAMEKFEESKEVAETS-MHNLLETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred -------HH-----------HHHHHHHHHHHHHHHHHH-HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 223334454444444321 223333 4677777888888888888888876543
Done!