BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044678
(239 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
pdb|1N10|B Chain B, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen
Allergen
Length = 241
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 29/243 (11%)
Query: 10 SASTLNEWSPAHATFYGDM--AGNETMYGACGYGDLFKQGYGLETTALSTALFNNGQTCG 67
+A+ ++W A +T+YG AG + GACGY D+ K + T +T +F +G+ CG
Sbjct: 12 TATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCG 71
Query: 68 ACYQIVCYNSKWCLKGAGAIGVTATNFCPPNYSKPHENWCNPPLKHFDLSQPMFRKIAE- 126
+C++I C + C + +T N P P+ HFDLS F +A+
Sbjct: 72 SCFEIKCTKPEACSGEPVVVHITDDNEEP---IAPY---------HFDLSGHAFGAMAKK 119
Query: 127 ------YKGGIVPVLYRRVSCVKSGGVM----FEMLGNPYWILVLVYNVGGAGEVINVKI 176
G + + +RRV C G E NP ++ +LV V G G+V+ V I
Sbjct: 120 GDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDI 179
Query: 177 KGS-STGWIQMSRNWGQNWQ--TSAQLLGQSLSFQVTTSDGKMVQFDDVAPPHWQFGDVF 233
K WI++ +WG W+ T +L G + + TT G + +DV P W+ +
Sbjct: 180 KEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSY 238
Query: 234 EGK 236
E K
Sbjct: 239 ESK 241
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 27/239 (11%)
Query: 16 EWSPAHATFYG--DMAGNETMYGACGYGDLFKQGYGLETTALSTALFNNGQTCGACYQIV 73
+W A AT+YG + AG GACG ++ Y T + +F +G+ CG+CY++
Sbjct: 18 KWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVR 77
Query: 74 CYNSKWCLKGAGAIGVTATNFCPPNYSKPHENWCNPPLKHFDLSQPMFRKIAE------- 126
C C + +T N+ P P+ HFDLS F +A+
Sbjct: 78 CKEKPECSGNPVTVYITDMNYEP---IAPY---------HFDLSGKAFGSLAKPGLNDKI 125
Query: 127 YKGGIVPVLYRRVSCVKSGG--VMFEMLG--NPYWILVLVYNVGGAGEVINVKIKGS-ST 181
GI+ V +RRV C G ++F + NP ++ VLV V G+++ ++I+ S
Sbjct: 126 RHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDKLSA 185
Query: 182 GWIQMSRNWGQNWQ-TSAQLLGQSLSFQVTTSDGKMVQFDDVAPPHWQFGDVFEGKQNF 239
W M +WG W+ +A+ L S ++T+ GK V DV P +W+ V+ F
Sbjct: 186 EWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSNVQF 244
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 86 AIGVTATNFCPPNYSKPHENW--CNPPLKHFDLSQPMFRKIAEYKGGIVPVLYRRVSCVK 143
A+G+ AT P + + H N C+ L+ +D ++ K E GG V LYRR ++
Sbjct: 54 ALGLDAT---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 110
Query: 144 SGGVMFEML 152
G + + +
Sbjct: 111 KLGRLDQAV 119
>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The
Solution Structure Of Phl Pii From Timothy Grass Pollen,
Nmr, 38 Structures
pdb|1WHO|A Chain A, Allergen Phl P 2
pdb|1WHP|A Chain A, Allergen Phl P 2
pdb|2VXQ|A Chain A, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 96
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 154 NPYWILVLVYNVGGAGEVINVKIKGSSTGWIQMSRNWGQNWQ-TSAQLLGQSLSFQVTTS 212
N + VLV G + ++ GS W+ M++ G W S + L +F+ T
Sbjct: 13 NEKHLAVLVKYEGDTMAEVELREHGSDE-WVAMTKGEGGVWTFDSEEPLQGPFNFRFLTE 71
Query: 213 DGKMVQFDDVAPPHWQFGDVF 233
G FDDV P + G +
Sbjct: 72 KGMKNVFDDVVPEKYTIGATY 92
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 170 EVINVKIKGSSTGWI---------QMSRNWGQNWQTSAQLLGQSLSFQVTTSDGKMVQFD 220
E V+++G ST + Q SR W ++ + + G S S+ V ++G V D
Sbjct: 440 EPPKVRLEGRSTTSLSVSWSIPPPQQSRVW--KYEVTYRKKGDSNSYNVRRTEGFSVTLD 497
Query: 221 DVAP 224
D+AP
Sbjct: 498 DLAP 501
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 170 EVINVKIKGSSTGWI---------QMSRNWGQNWQTSAQLLGQSLSFQVTTSDGKMVQFD 220
E V+++G ST + Q SR W ++ + + G S S+ V ++G V D
Sbjct: 443 EPPKVRLEGRSTTSLSVSWSIPPPQQSRVW--KYEVTYRKKGDSNSYNVRRTEGFSVTLD 500
Query: 221 DVAP 224
D+AP
Sbjct: 501 DLAP 504
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 11/64 (17%)
Query: 170 EVINVKIKGSSTGWI---------QMSRNWGQNWQTSAQLLGQSLSFQVTTSDGKMVQFD 220
E V+++G ST + Q SR W ++ + + G S S+ V ++G V D
Sbjct: 440 EPPKVRLEGRSTTSLSVSWSIPPPQQSRVW--KYEVTYRKKGDSNSYNVRRTEGFSVTLD 497
Query: 221 DVAP 224
D+AP
Sbjct: 498 DLAP 501
>pdb|3D30|A Chain A, Structure Of An Expansin Like Protein From Bacillus
Subtilis At 1.9a Resolution
pdb|4FER|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FER|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellohexaose
pdb|4FFT|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FFT|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Mixed-Linkage Glucan
pdb|4FG2|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG2|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Cellotetraose
pdb|4FG4|A Chain A, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
pdb|4FG4|B Chain B, Crystal Structure Of Bacillus Subtilis Expansin (Exlx1) In
Complex With Hemithiocellodextrin
Length = 208
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 114 FDLSQPMFRKIAEYKGGIVPVLYRRVSCVKSGGVMFEML--GNPYWILVLVYNVGGAGEV 171
DLS FRKI K G + + +R V +G + + + +W + V N +
Sbjct: 81 LDLSPNAFRKIGNMKDGKINIKWRVVKAPITGNFTYRIKEGSSRWWAAIQVRN----HKY 136
Query: 172 INVKIKGSSTG-WIQMSRNWGQNWQTSAQLLGQSLSFQVTTSDGKMVQ 218
+K++ G WI M + N S L SL ++T GK+V+
Sbjct: 137 PVMKMEYEKDGKWINMEK-MDYNHFVSTNLGTGSLKVRMTDIRGKVVK 183
>pdb|1S35|A Chain A, Crystal Structure Of Repeats 8 And 9 Of Human Erythroid
Spectrin
Length = 214
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 136 YRRVSCVKSGGVMFEMLGNPYWILVLVYNVGGAGEVINVKIKGSSTGWIQMSRNWGQNWQ 195
Y+RV +SG + + +P ++L + +++G TGW + R W
Sbjct: 56 YQRVK--ESGEKVIQGQTDPEYLL------------LGQRLEGLDTGWDALGRMWESRSH 101
Query: 196 TSAQLLGQSLSFQVTTSDGKMVQ 218
T AQ LG FQ D K +
Sbjct: 102 TLAQCLG----FQEFQKDAKQAE 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,013,957
Number of Sequences: 62578
Number of extensions: 341716
Number of successful extensions: 604
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 9
length of query: 239
length of database: 14,973,337
effective HSP length: 96
effective length of query: 143
effective length of database: 8,965,849
effective search space: 1282116407
effective search space used: 1282116407
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)