Query 044678
Match_columns 239
No_of_seqs 156 out of 1046
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:40:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 2.6E-71 5.6E-76 484.6 27.3 230 8-238 21-256 (256)
2 PLN00050 expansin A; Provision 100.0 5.6E-71 1.2E-75 480.7 26.1 223 14-238 22-247 (247)
3 PLN03023 Expansin-like B1; Pro 100.0 1.7E-64 3.6E-69 439.7 24.3 219 4-238 12-246 (247)
4 COG4305 Endoglucanase C-termin 100.0 5E-28 1.1E-32 198.1 19.4 179 18-226 31-216 (232)
5 PLN03024 Putative EG45-like do 100.0 4.2E-28 9.1E-33 192.0 11.6 110 3-138 11-125 (125)
6 smart00837 DPBB_1 Rare lipopro 99.9 2.4E-26 5.2E-31 171.5 8.2 84 52-136 1-87 (87)
7 PLN00115 pollen allergen group 99.9 1.6E-23 3.5E-28 163.9 11.3 91 140-238 21-118 (118)
8 PF01357 Pollen_allerg_1: Poll 99.9 1.4E-22 3.1E-27 149.7 10.2 77 147-224 1-82 (82)
9 PF03330 DPBB_1: Rare lipoprot 99.8 4E-20 8.7E-25 135.1 6.2 74 52-136 1-78 (78)
10 PF00967 Barwin: Barwin family 99.0 1.9E-10 4E-15 88.8 4.1 59 63-141 57-119 (119)
11 PF07249 Cerato-platanin: Cera 98.3 4.2E-06 9.2E-11 65.8 8.6 66 51-140 44-113 (119)
12 TIGR00413 rlpA rare lipoprotei 98.0 8.1E-05 1.8E-09 63.6 10.7 95 20-143 1-95 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.9 8.7E-05 1.9E-09 64.5 9.8 59 67-142 120-178 (233)
14 PRK10672 rare lipoprotein A; P 97.2 0.0042 9.2E-08 57.4 11.3 93 18-139 79-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.5 0.064 1.4E-06 45.8 2.9 54 52-119 70-123 (201)
16 cd02854 Glycogen_branching_enz 72.1 11 0.00023 28.4 5.2 48 171-218 16-76 (99)
17 PF03404 Mo-co_dimer: Mo-co ox 62.0 15 0.00032 29.3 4.3 47 170-216 42-106 (131)
18 cd02110 SO_family_Moco_dimer S 59.3 20 0.00044 32.7 5.4 50 167-216 234-293 (317)
19 TIGR02588 conserved hypothetic 58.3 50 0.0011 26.2 6.6 59 153-212 48-119 (122)
20 PRK10564 maltose regulon perip 56.7 38 0.00082 31.0 6.5 77 133-238 47-127 (303)
21 PF10417 1-cysPrx_C: C-termina 50.4 9.2 0.0002 24.1 1.1 11 221-231 10-20 (40)
22 PLN00177 sulfite oxidase; Prov 41.2 60 0.0013 30.7 5.5 55 162-216 289-362 (393)
23 cd02855 Glycogen_branching_enz 40.2 1.1E+02 0.0024 22.2 6.0 34 184-217 49-85 (106)
24 cd02113 bact_SoxC_Moco bacteri 35.5 79 0.0017 29.1 5.3 50 167-216 236-294 (326)
25 cd02859 AMPKbeta_GBD_like AMP- 32.8 1.8E+02 0.0039 20.6 6.2 48 171-220 12-62 (79)
26 cd02114 bact_SorA_Moco sulfite 32.0 76 0.0017 29.7 4.6 50 167-216 286-345 (367)
27 PF03100 CcmE: CcmE; InterPro 31.8 72 0.0015 25.2 3.8 30 203-232 71-101 (131)
28 cd02861 E_set_proteins_like E 30.1 1.4E+02 0.003 21.1 4.8 44 172-217 14-60 (82)
29 cd02111 eukary_SO_Moco molybdo 28.5 1.5E+02 0.0033 27.7 6.0 55 162-216 269-339 (365)
30 PRK13254 cytochrome c-type bio 27.5 99 0.0021 25.2 4.0 28 204-231 72-100 (148)
31 PRK13159 cytochrome c-type bio 27.3 85 0.0018 25.9 3.6 28 204-231 73-101 (155)
32 PRK13150 cytochrome c-type bio 23.4 1E+02 0.0022 25.5 3.4 29 204-232 79-108 (159)
33 PF02922 CBM_48: Carbohydrate- 23.4 2.3E+02 0.005 19.6 5.0 49 171-219 22-80 (85)
34 COG2372 CopC Uncharacterized p 22.7 1.3E+02 0.0029 23.9 3.8 28 126-153 96-126 (127)
35 PRK13165 cytochrome c-type bio 21.1 1.2E+02 0.0027 25.1 3.4 28 204-231 79-107 (160)
36 cd02860 Pullulanase_N_term Pul 21.1 2.6E+02 0.0056 20.4 5.0 33 184-216 39-73 (100)
37 cd02112 eukary_NR_Moco molybdo 20.2 3E+02 0.0065 26.0 6.3 54 163-216 294-364 (386)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.6e-71 Score=484.58 Aligned_cols=230 Identities=57% Similarity=1.126 Sum_probs=214.1
Q ss_pred hhcccCCCCeeeEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEeChhccCCCCCCCceEEEEeC---CCccccCCC
Q 044678 8 FSSASTLNEWSPAHATFYGDMAGNETMYGACGYGDLFKQGYGLETTALSTALFNNGQTCGACYQIVCY---NSKWCLKGA 84 (239)
Q Consensus 8 ~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~---~~~~C~~g~ 84 (239)
...+-+.++|++++|||||++|+.++++|||||+++..++++.++||+|+++|++|++||+||||+|. +++.|.++
T Consensus 21 ~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g- 99 (256)
T PLN00193 21 NVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKG- 99 (256)
T ss_pred hccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCC-
Confidence 33444667899999999999999899999999999888889999999999999999999999999995 45689766
Q ss_pred ccEEEEEeCCCCCCCCCCC--CCCCCCCCCceeeCHHHHHhhhcccCCEEEEEEEEEEeccCCceEEEEcCccCeEEEEE
Q 044678 85 GAIGVTATNFCPPNYSKPH--ENWCNPPLKHFDLSQPMFRKIAEYKGGIVPVLYRRVSCVKSGGVMFEMLGNPYWILVLV 162 (239)
Q Consensus 85 ~sv~v~vtD~Cp~~~~~~~--~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V~C~~~g~i~~~~~ss~~w~~v~v 162 (239)
++|+|+|||.||+++.+|+ .+||++++.|||||.+||.+||.+..|+|+|+||||+|+++|+|+|++++++||++|+|
T Consensus 100 ~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~~G~i~f~v~gn~y~~~vlv 179 (256)
T PLN00193 100 ASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLI 179 (256)
T ss_pred CeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEeccccCCCcEEEEcCCccEEEEEE
Confidence 6999999999999888874 44999889999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcceEEEEEEecCCceeeccccCCCeEEeCCCCCCcceEEEEEecCCeEEEEccccCCCCCCCcEEecC-CC
Q 044678 163 YNVGGAGEVINVKIKGSSTGWIQMSRNWGQNWQTSAQLLGQSLSFQVTTSDGKMVQFDDVAPPHWQFGDVFEGK-QN 238 (239)
Q Consensus 163 ~n~~G~~~I~sVei~~~~~~w~~m~r~~g~~W~~~~~~~g~pl~vRiTs~~G~~v~~~~vip~~w~~G~~y~~~-~~ 238 (239)
.|++|+++|++|+|++++++|++|+|+||++|+++.+|.++||+||||+.+|+++++.||||++|++|+||++. ||
T Consensus 180 ~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~viPa~W~~G~ty~s~vqf 256 (256)
T PLN00193 180 SNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVVPANWGFGQTFSSSVQF 256 (256)
T ss_pred EEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECceeCCCCCCCCeEecCccC
Confidence 99999999999999998778999999999999999888888999999999999999999999999999999998 87
No 2
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=5.6e-71 Score=480.70 Aligned_cols=223 Identities=60% Similarity=1.148 Sum_probs=210.1
Q ss_pred CCCeeeEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEeChhccCCCCCCCceEEEEeCCC-ccccCCCccEEEEEe
Q 044678 14 LNEWSPAHATFYGDMAGNETMYGACGYGDLFKQGYGLETTALSTALFNNGQTCGACYQIVCYNS-KWCLKGAGAIGVTAT 92 (239)
Q Consensus 14 ~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~-~~C~~g~~sv~v~vt 92 (239)
..+|..++|||||++++.++++|||||+++..++++.++||+|+.+|++|++||+||||+|+++ ..|.++ +|+|+||
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~g--sV~V~it 99 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPG--SIIITAT 99 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCC--cEEEEEe
Confidence 4689999999999999999999999999988888999999999999999999999999999765 479765 8999999
Q ss_pred CCCCCCCCCCC--CCCCCCCCCceeeCHHHHHhhhcccCCEEEEEEEEEEeccCCceEEEEcCccCeEEEEEEEecCCcc
Q 044678 93 NFCPPNYSKPH--ENWCNPPLKHFDLSQPMFRKIAEYKGGIVPVLYRRVSCVKSGGVMFEMLGNPYWILVLVYNVGGAGE 170 (239)
Q Consensus 93 D~Cp~~~~~~~--~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V~C~~~g~i~~~~~ss~~w~~v~v~n~~G~~~ 170 (239)
|+||+++..|+ .+||++++.|||||.+||.+||.+..|+|+|+||||+|+++|+|+|++++++||++|+|.|++|+++
T Consensus 100 d~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~gd 179 (247)
T PLN00050 100 NFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGD 179 (247)
T ss_pred cCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCcc
Confidence 99999887774 4599988999999999999999999999999999999999999999999889999999999999999
Q ss_pred eEEEEEEecCCceeeccccCCCeEEeCCCCCCcceEEEEEecCCeEEEEccccCCCCCCCcEEecCCC
Q 044678 171 VINVKIKGSSTGWIQMSRNWGQNWQTSAQLLGQSLSFQVTTSDGKMVQFDDVAPPHWQFGDVFEGKQN 238 (239)
Q Consensus 171 I~sVei~~~~~~w~~m~r~~g~~W~~~~~~~g~pl~vRiTs~~G~~v~~~~vip~~w~~G~~y~~~~~ 238 (239)
|++|+|++++++|++|+|+||++|++++++.++||+||||+.+|+++++.||||++|++|+||+++||
T Consensus 180 i~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~~f 247 (247)
T PLN00050 180 IVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGMQF 247 (247)
T ss_pred EEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecCcC
Confidence 99999999877899999999999999888888899999999999999999999999999999999987
No 3
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=1.7e-64 Score=439.71 Aligned_cols=219 Identities=26% Similarity=0.574 Sum_probs=196.3
Q ss_pred hhhhhhcccCCCCeeeEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEeChhccCCCCCCCceEEEEeCCCccccCC
Q 044678 4 ALSLFSSASTLNEWSPAHATFYGDMAGNETMYGACGYGDLFKQGYGLETTALSTALFNNGQTCGACYQIVCYNSKWCLKG 83 (239)
Q Consensus 4 ~~~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~C~~g 83 (239)
.|.|.|.+...++|.+++|||||++++.|+++|||||+++..+.++..+||+| ++|++|++||+||||+|.++..|.++
T Consensus 12 ~~~~~~~~~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~ 90 (247)
T PLN03023 12 VIVLLPLLCKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDD 90 (247)
T ss_pred HHHHhhhhhhcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCC
Confidence 34555667778889999999999999999999999999988888899999999 99999999999999999988899765
Q ss_pred CccEEEEEeCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhc-------ccCCEEEEEEEEEEeccCC-ceEEEEc--C
Q 044678 84 AGAIGVTATNFCPPNYSKPHENWCNPPLKHFDLSQPMFRKIAE-------YKGGIVPVLYRRVSCVKSG-GVMFEML--G 153 (239)
Q Consensus 84 ~~sv~v~vtD~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~-------~~~G~v~i~~~~V~C~~~g-~i~~~~~--s 153 (239)
+|+|+|||.||. + +.|||||.+||.+||. +..|+|+|+||||||.++| +|+|++. +
T Consensus 91 --~v~V~iTd~~~~---------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s 156 (247)
T PLN03023 91 --GVNVVVTDYGEG---------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHS 156 (247)
T ss_pred --CeEEEEEeCCCC---------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCC
Confidence 899999999985 3 5899999999999998 5679999999999999999 9999994 4
Q ss_pred c-cCeEEEEEEEecCCcceEEEEEEec-CCceeeccccCCCeEEeCCCCCCcceEEEE--EecCCeE-EEEccccCCCCC
Q 044678 154 N-PYWILVLVYNVGGAGEVINVKIKGS-STGWIQMSRNWGQNWQTSAQLLGQSLSFQV--TTSDGKM-VQFDDVAPPHWQ 228 (239)
Q Consensus 154 s-~~w~~v~v~n~~G~~~I~sVei~~~-~~~w~~m~r~~g~~W~~~~~~~g~pl~vRi--Ts~~G~~-v~~~~vip~~w~ 228 (239)
+ ++|++|+|.|++|+++|++||||++ +..|++|+|+||++|+++++|.| ||+||+ |+.+|++ |+++||||++|+
T Consensus 157 ~~p~yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk 235 (247)
T PLN03023 157 RFPDYLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWK 235 (247)
T ss_pred CCCceEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCC
Confidence 3 7799999999999999999999986 46899999999999999988998 655555 5557755 899999999999
Q ss_pred CCcEEecC-CC
Q 044678 229 FGDVFEGK-QN 238 (239)
Q Consensus 229 ~G~~y~~~-~~ 238 (239)
+|+||+++ ||
T Consensus 236 ~G~TY~s~vq~ 246 (247)
T PLN03023 236 AGVAYDSNIQL 246 (247)
T ss_pred CCCEEeccccc
Confidence 99999999 87
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.96 E-value=5e-28 Score=198.12 Aligned_cols=179 Identities=24% Similarity=0.327 Sum_probs=152.2
Q ss_pred eeEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEeChhccCCC----CCCCceEEEEeCCCccccCCCccEEEEEeC
Q 044678 18 SPAHATFYGDMAGNETMYGACGYGDLFKQGYGLETTALSTALFNNG----QTCGACYQIVCYNSKWCLKGAGAIGVTATN 93 (239)
Q Consensus 18 ~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~~v~c~~~~~C~~g~~sv~v~vtD 93 (239)
++|.|||-|. |..+||-.+.+. +-+..+.|+++.+-+-| +.-|+.++|.++ + .+.+|.|||
T Consensus 31 f~G~ATyTgs----GYsGGAflLDPI---~sd~eITAlNPaqlNlGGipAAmAGaYLrVqGP-------K-G~TTVYVTD 95 (232)
T COG4305 31 FEGYATYTGS----GYSGGAFLLDPI---PSDMEITALNPAQLNLGGIPAAMAGAYLRVQGP-------K-GKTTVYVTD 95 (232)
T ss_pred cceeEEEecc----cccCceEEecCc---CCcceeeecCHHHcccCCchhhhccceEEEECC-------C-CceEEEEec
Confidence 7899998764 345788765443 44678999999888754 779999999985 4 488999999
Q ss_pred CCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCEEEEEEEEEEeccCCceEEEE--cCccCeEEEEEEEecCCcce
Q 044678 94 FCPPNYSKPHENWCNPPLKHFDLSQPMFRKIAEYKGGIVPVLYRRVSCVKSGGVMFEM--LGNPYWILVLVYNVGGAGEV 171 (239)
Q Consensus 94 ~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V~C~~~g~i~~~~--~ss~~w~~v~v~n~~G~~~I 171 (239)
..|++ . ++.||||+.||.+|+++.+|+|+|+||.|+-|..||+.+++ +|+.||.++||+|+. .+|
T Consensus 96 lYPeg---------a--sGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRnH~--yPV 162 (232)
T COG4305 96 LYPEG---------A--SGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRNHK--YPV 162 (232)
T ss_pred ccccc---------c--ccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeeccc--Cce
Confidence 99994 2 58999999999999999999999999999999999987665 689999999999998 999
Q ss_pred EEEEEEecCCceeeccccCCCeEEeCCCCCCcceEEEEEecCCeEEEEc-cccCCC
Q 044678 172 INVKIKGSSTGWIQMSRNWGQNWQTSAQLLGQSLSFQVTTSDGKMVQFD-DVAPPH 226 (239)
Q Consensus 172 ~sVei~~~~~~w~~m~r~~g~~W~~~~~~~g~pl~vRiTs~~G~~v~~~-~vip~~ 226 (239)
.++|+..+ +.|..|.+.+||+|.-.+ |...||++|+|++.|+.++.. -.+|..
T Consensus 163 ~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~ 216 (232)
T COG4305 163 MKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKS 216 (232)
T ss_pred EEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeeccccccccc
Confidence 99999975 689999999999997655 554599999999999999876 466643
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.95 E-value=4.2e-28 Score=191.96 Aligned_cols=110 Identities=33% Similarity=0.659 Sum_probs=89.9
Q ss_pred hhhhhhhcccCCCCeeeEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEeChhccCCCCCCCceEEEEeCCC-----
Q 044678 3 IALSLFSSASTLNEWSPAHATFYGDMAGNETMYGACGYGDLFKQGYGLETTALSTALFNNGQTCGACYQIVCYNS----- 77 (239)
Q Consensus 3 ~~~~~~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~----- 77 (239)
+.++|+|++. ...|+||||++.+ .||| |++ .+++.++||+|+.+|++|+.||+||||+|.+.
T Consensus 11 ~~~~~~~~~~----~~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~ 77 (125)
T PLN03024 11 VLVFLFSVSY----ATPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVP 77 (125)
T ss_pred HHHHHhhhhc----ccceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCcccc
Confidence 4445555554 3469999998643 5899 444 24688999999999999999999999999754
Q ss_pred ccccCCCccEEEEEeCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCEEEEEEEE
Q 044678 78 KWCLKGAGAIGVTATNFCPPNYSKPHENWCNPPLKHFDLSQPMFRKIAEYKGGIVPVLYRR 138 (239)
Q Consensus 78 ~~C~~g~~sv~v~vtD~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~ 138 (239)
..|. + ++|+|+|+|+||++ |. .|||||++||.+||+++.|+|+|+|.+
T Consensus 78 ~~c~-g-ksV~V~VtD~CP~~--------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~ 125 (125)
T PLN03024 78 HPCT-G-KSVTVKIVDHCPSG--------CA---STLDLSREAFAQIANPVAGIINIDYIP 125 (125)
T ss_pred cccc-C-CeEEEEEEcCCCCC--------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence 3675 3 59999999999963 75 599999999999999999999999974
No 6
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.93 E-value=2.4e-26 Score=171.52 Aligned_cols=84 Identities=71% Similarity=1.374 Sum_probs=75.1
Q ss_pred EEEeChhccCCCCCCCceEEEEeCC-CccccCCCccEEEEEeCCCCCCCCCCC--CCCCCCCCCceeeCHHHHHhhhccc
Q 044678 52 TTALSTALFNNGQTCGACYQIVCYN-SKWCLKGAGAIGVTATNFCPPNYSKPH--ENWCNPPLKHFDLSQPMFRKIAEYK 128 (239)
Q Consensus 52 ~aA~s~~~~~~g~~CG~C~~v~c~~-~~~C~~g~~sv~v~vtD~Cp~~~~~~~--~~~C~~~~~~~DLs~~aF~~la~~~ 128 (239)
+||+|+.+|++|++||+||||+|.+ +..|.++ ++|+|+|||+||+++..+. .+||.+++.|||||++||.+||.+.
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~-~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~~ 79 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPG-GSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQYK 79 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCC-CeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhhc
Confidence 4899999999999999999999974 4579876 6999999999999776664 3599988999999999999999999
Q ss_pred CCEEEEEE
Q 044678 129 GGIVPVLY 136 (239)
Q Consensus 129 ~G~v~i~~ 136 (239)
.|+|+|+|
T Consensus 80 ~Gvi~v~y 87 (87)
T smart00837 80 AGIVPVKY 87 (87)
T ss_pred CCEEeeEC
Confidence 99999987
No 7
>PLN00115 pollen allergen group 3; Provisional
Probab=99.90 E-value=1.6e-23 Score=163.88 Aligned_cols=91 Identities=23% Similarity=0.441 Sum_probs=79.4
Q ss_pred EeccCCceEEEEc--CccCeEEEEEEEecCCcceEEEEEEecC-Ccee-eccccCCCeEEeCC--CCCCcceEEEEEecC
Q 044678 140 SCVKSGGVMFEML--GNPYWILVLVYNVGGAGEVINVKIKGSS-TGWI-QMSRNWGQNWQTSA--QLLGQSLSFQVTTSD 213 (239)
Q Consensus 140 ~C~~~g~i~~~~~--ss~~w~~v~v~n~~G~~~I~sVei~~~~-~~w~-~m~r~~g~~W~~~~--~~~g~pl~vRiTs~~ 213 (239)
.|. -+|+|+++ ++++|+.+++ | ++|.+|||++++ ..|+ +|+|+||++|++++ +|+| ||+||+|+.+
T Consensus 21 ~~g--~~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~ 92 (118)
T PLN00115 21 SCA--TEVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKG 92 (118)
T ss_pred hcC--CceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeC
Confidence 464 28999984 6688997765 4 469999999984 6899 99999999999764 6788 9999999999
Q ss_pred CeEEEEccccCCCCCCCcEEecC-CC
Q 044678 214 GKMVQFDDVAPPHWQFGDVFEGK-QN 238 (239)
Q Consensus 214 G~~v~~~~vip~~w~~G~~y~~~-~~ 238 (239)
|++++++||||++|++|+||+++ ||
T Consensus 93 G~~~va~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 93 GGYRVVDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred CCEEEECceECCCCCCCCEEeccccC
Confidence 99999999999999999999999 86
No 8
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.88 E-value=1.4e-22 Score=149.73 Aligned_cols=77 Identities=47% Similarity=0.859 Sum_probs=63.2
Q ss_pred eEEEEc--CccCeEEEEEEEecCCcceEEEEEEecC-CceeeccccCCCeEEeC-CCCCCcceEEEEEecC-CeEEEEcc
Q 044678 147 VMFEML--GNPYWILVLVYNVGGAGEVINVKIKGSS-TGWIQMSRNWGQNWQTS-AQLLGQSLSFQVTTSD-GKMVQFDD 221 (239)
Q Consensus 147 i~~~~~--ss~~w~~v~v~n~~G~~~I~sVei~~~~-~~w~~m~r~~g~~W~~~-~~~~g~pl~vRiTs~~-G~~v~~~~ 221 (239)
|+|+++ |++||++|+|.|++|.++|++|||++++ .+|++|+|+||++|+++ .++.+ ||+||||+.+ |++++++|
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~~-pls~Rvts~~~G~~vv~~n 79 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPGG-PLSFRVTSGDSGQTVVADN 79 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS--S-SEEEEEEETTTSEEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcCC-CEEEEEEEcCCCeEEEEec
Confidence 678874 6799999999999999999999999775 56999999999999998 45555 9999999977 99999999
Q ss_pred ccC
Q 044678 222 VAP 224 (239)
Q Consensus 222 vip 224 (239)
|||
T Consensus 80 ViP 82 (82)
T PF01357_consen 80 VIP 82 (82)
T ss_dssp EE-
T ss_pred ccC
Confidence 998
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.81 E-value=4e-20 Score=135.05 Aligned_cols=74 Identities=38% Similarity=0.817 Sum_probs=61.7
Q ss_pred EEEeChhccCCCCCCCceEEEEeCC--Ccc--ccCCCccEEEEEeCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcc
Q 044678 52 TTALSTALFNNGQTCGACYQIVCYN--SKW--CLKGAGAIGVTATNFCPPNYSKPHENWCNPPLKHFDLSQPMFRKIAEY 127 (239)
Q Consensus 52 ~aA~s~~~~~~g~~CG~C~~v~c~~--~~~--C~~g~~sv~v~vtD~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~ 127 (239)
+||++..+|++|..||+||+++|.. ... |..+.++|+|+|+|+||+ |. ..|||||+.||++|+.+
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~---------~~--~~~lDLS~~aF~~la~~ 69 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG---------CP--PNHLDLSPAAFKALADP 69 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT---------SS--SSEEEEEHHHHHHTBST
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC---------Cc--CCEEEeCHHHHHHhCCC
Confidence 5899999999999999999999932 223 765226999999999998 87 58999999999999999
Q ss_pred cCCEEEEEE
Q 044678 128 KGGIVPVLY 136 (239)
Q Consensus 128 ~~G~v~i~~ 136 (239)
+.|+++|+|
T Consensus 70 ~~G~i~V~w 78 (78)
T PF03330_consen 70 DAGVIPVEW 78 (78)
T ss_dssp TCSSEEEEE
T ss_pred CceEEEEEC
Confidence 999999998
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.04 E-value=1.9e-10 Score=88.75 Aligned_cols=59 Identities=25% Similarity=0.556 Sum_probs=44.1
Q ss_pred CCCCCceEEEEeCCCccccCCCccEEEEEeCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhc----ccCCEEEEEEEE
Q 044678 63 GQTCGACYQIVCYNSKWCLKGAGAIGVTATNFCPPNYSKPHENWCNPPLKHFDLSQPMFRKIAE----YKGGIVPVLYRR 138 (239)
Q Consensus 63 g~~CG~C~~v~c~~~~~C~~g~~sv~v~vtD~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~----~~~G~v~i~~~~ 138 (239)
-..||+|++||... .+.+++|+|+|+|+. ++|||++.+|.+|-. ...|.+.|.|++
T Consensus 57 q~~CGkClrVTNt~------tga~~~~RIVDqCsn--------------GGLDld~~vF~~iDtdG~G~~~Ghl~V~y~f 116 (119)
T PF00967_consen 57 QDSCGKCLRVTNTA------TGAQVTVRIVDQCSN--------------GGLDLDPTVFNQIDTDGQGYAQGHLIVDYEF 116 (119)
T ss_dssp GGGTT-EEEEE-TT------T--EEEEEEEEE-SS--------------SSEES-SSSHHHH-SSSHHHHHTEEEEEEEE
T ss_pred cccccceEEEEecC------CCcEEEEEEEEcCCC--------------CCcccChhHHhhhccCCcccccceEEEEEEE
Confidence 46899999999874 347999999999986 599999999999953 477999999999
Q ss_pred EEe
Q 044678 139 VSC 141 (239)
Q Consensus 139 V~C 141 (239)
|+|
T Consensus 117 V~C 119 (119)
T PF00967_consen 117 VDC 119 (119)
T ss_dssp E--
T ss_pred EcC
Confidence 998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.30 E-value=4.2e-06 Score=65.79 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=48.1
Q ss_pred eEEEeCh-hccCCCCCCCceEEEEeCCCccccCCCccEEEEEeCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhc---
Q 044678 51 ETTALST-ALFNNGQTCGACYQIVCYNSKWCLKGAGAIGVTATNFCPPNYSKPHENWCNPPLKHFDLSQPMFRKIAE--- 126 (239)
Q Consensus 51 ~~aA~s~-~~~~~g~~CG~C~~v~c~~~~~C~~g~~sv~v~vtD~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~--- 126 (239)
+|.+... .-| |+..||.|+|++- ++++|.|..+|.=+ ..|+|+.+||+.|.+
T Consensus 44 ~IGg~~~V~gW-nS~~CGtC~~lty--------~g~si~vlaID~a~---------------~gfnis~~A~n~LT~g~a 99 (119)
T PF07249_consen 44 YIGGAPAVAGW-NSPNCGTCWKLTY--------NGRSIYVLAIDHAG---------------GGFNISLDAMNDLTNGQA 99 (119)
T ss_dssp SEEEETT--ST-T-TTTT-EEEEEE--------TTEEEEEEEEEE-S---------------SSEEE-HHHHHHHHTS-C
T ss_pred eeccccccccC-CCCCCCCeEEEEE--------CCeEEEEEEEecCC---------------CcccchHHHHHHhcCCcc
Confidence 5666665 456 5579999999996 33899999999844 469999999999986
Q ss_pred ccCCEEEEEEEEEE
Q 044678 127 YKGGIVPVLYRRVS 140 (239)
Q Consensus 127 ~~~G~v~i~~~~V~ 140 (239)
...|+|+++|++|+
T Consensus 100 ~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 100 VELGRVDATYTQVD 113 (119)
T ss_dssp CCC-EEE-EEEEE-
T ss_pred cceeEEEEEEEEcC
Confidence 47899999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.99 E-value=8.1e-05 Score=63.63 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=68.2
Q ss_pred EEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEeChhccCCCCCCCceEEEEeCCCccccCCCccEEEEEeCCCCCCC
Q 044678 20 AHATFYGDMAGNETMYGACGYGDLFKQGYGLETTALSTALFNNGQTCGACYQIVCYNSKWCLKGAGAIGVTATNFCPPNY 99 (239)
Q Consensus 20 g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~C~~g~~sv~v~vtD~Cp~~~ 99 (239)
|.|+|||..-. | ...|.|=. +. ...++||-. ....|..++|+... ++++|+|+|.|++|-.
T Consensus 1 G~ASwYg~~f~-G-~~TAnGe~--y~--~~~~tAAHk------tLPlgT~V~VtNl~------ngrsviVrVnDRGPf~- 61 (208)
T TIGR00413 1 GLASWYGPKFH-G-RKTANGEV--YN--MKALTAAHK------TLPFNTYVKVTNLH------NNRSVIVRINDRGPFS- 61 (208)
T ss_pred CEEeEeCCCCC-C-CcCCCCee--cC--CCccccccc------cCCCCCEEEEEECC------CCCEEEEEEeCCCCCC-
Confidence 67999985311 1 12333321 11 123455533 24789999999874 3489999999999973
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHhhhcccCCEEEEEEEEEEecc
Q 044678 100 SKPHENWCNPPLKHFDLSQPMFRKIAEYKGGIVPVLYRRVSCVK 143 (239)
Q Consensus 100 ~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V~C~~ 143 (239)
. ..-+|||+.|+.+|+-...|+.+|+.+.+....
T Consensus 62 --------~--gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~ 95 (208)
T TIGR00413 62 --------D--DRIIDLSHAAAREIGLISRGVGQVRIEVLHVAK 95 (208)
T ss_pred --------C--CCEEECCHHHHHHcCCCcCceEEEEEEEEecCC
Confidence 1 468999999999999999999999999998754
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=8.7e-05 Score=64.47 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=51.3
Q ss_pred CceEEEEeCCCccccCCCccEEEEEeCCCCCCCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCEEEEEEEEEEec
Q 044678 67 GACYQIVCYNSKWCLKGAGAIGVTATNFCPPNYSKPHENWCNPPLKHFDLSQPMFRKIAEYKGGIVPVLYRRVSCV 142 (239)
Q Consensus 67 G~C~~v~c~~~~~C~~g~~sv~v~vtD~Cp~~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V~C~ 142 (239)
|.-.+|+..+ ++++|+|+|.|++|-. . .-.||||..|+++|+-...|+.+|+.+.+.+.
T Consensus 120 ~t~v~VtNl~------NgrsvvVRINDRGPf~----------~-gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 120 PTYVRVTNLD------NGRSVVVRINDRGPFV----------S-GRIIDLSKAAADKLGMIRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCEEEEEEcc------CCcEEEEEEeCCCCCC----------C-CcEeEcCHHHHHHhCCccCceEEEEEEEeccc
Confidence 6788999875 3489999999999952 2 36899999999999999999999999999865
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=97.21 E-value=0.0042 Score=57.42 Aligned_cols=93 Identities=19% Similarity=0.139 Sum_probs=63.0
Q ss_pred eeEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEeChhccCCCCCCCceEEEEeCCCccccCCCccEEEEEeCCCCC
Q 044678 18 SPAHATFYGDMAGNETMYGACGYGDLFKQGYGLETTALSTALFNNGQTCGACYQIVCYNSKWCLKGAGAIGVTATNFCPP 97 (239)
Q Consensus 18 ~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~~v~c~~~~~C~~g~~sv~v~vtD~Cp~ 97 (239)
..|.|+|||..-. | ...|.| +.++ ...++||-.+ .--|..++|+..+ ++++|+|+|.|++|-
T Consensus 79 ~~G~ASwYg~~f~-G-~~TA~G--e~~~--~~~~tAAH~t------LPlps~vrVtNl~------ngrsvvVrVnDRGP~ 140 (361)
T PRK10672 79 QAGLAAIYDAEAG-S-NLTASG--ERFD--PNALTAAHPT------LPIPSYVRVTNLA------NGRMIVVRINDRGPY 140 (361)
T ss_pred eEEEEEEeCCccC-C-CcCcCc--eeec--CCcCeeeccC------CCCCCEEEEEECC------CCcEEEEEEeCCCCC
Confidence 4699999985311 0 012222 1111 1234555332 3568999999885 348999999999997
Q ss_pred CCCCCCCCCCCCCCCceeeCHHHHHhhhcccCCEEEEEEEEE
Q 044678 98 NYSKPHENWCNPPLKHFDLSQPMFRKIAEYKGGIVPVLYRRV 139 (239)
Q Consensus 98 ~~~~~~~~~C~~~~~~~DLs~~aF~~la~~~~G~v~i~~~~V 139 (239)
. . ..-+|||..|+++|.-...+.|.|+.-.|
T Consensus 141 ~---------~--gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v 171 (361)
T PRK10672 141 G---------P--GRVIDLSRAAADRLNTSNNTKVRIDPIIV 171 (361)
T ss_pred C---------C--CCeeEcCHHHHHHhCCCCCceEEEEEEee
Confidence 3 1 46899999999999987777788877766
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.51 E-value=0.064 Score=45.82 Aligned_cols=54 Identities=28% Similarity=0.319 Sum_probs=31.5
Q ss_pred EEEeChhccCCCCCCCceEEEEeCCCccccCCCccEEEEEeCCCCCCCCCCCCCCCCCCCCceeeCHH
Q 044678 52 TTALSTALFNNGQTCGACYQIVCYNSKWCLKGAGAIGVTATNFCPPNYSKPHENWCNPPLKHFDLSQP 119 (239)
Q Consensus 52 ~aA~s~~~~~~g~~CG~C~~v~c~~~~~C~~g~~sv~v~vtD~Cp~~~~~~~~~~C~~~~~~~DLs~~ 119 (239)
+||++-.-......|++|||++-.+.+. .| |+.+|++|+.--+- ..+||||..+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~l--~G-KkmiVQ~tNtG~dl-----------g~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSGPL--KG-KKMIVQVTNTGGDL-----------GSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SSTT--TT--EEEEEEEEE-TTT-----------TTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCCCc--CC-CEeEEEecccCCCC-----------CCCeEEEEeC
Confidence 5666622222336799999999875221 34 89999999876541 1589999854
No 16
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=72.15 E-value=11 Score=28.44 Aligned_cols=48 Identities=15% Similarity=0.346 Sum_probs=33.2
Q ss_pred eEEEEEEecCCcee----eccccCCCeEEeCCC---------CCCcceEEEEEecCCeEEE
Q 044678 171 VINVKIKGSSTGWI----QMSRNWGQNWQTSAQ---------LLGQSLSFQVTTSDGKMVQ 218 (239)
Q Consensus 171 I~sVei~~~~~~w~----~m~r~~g~~W~~~~~---------~~g~pl~vRiTs~~G~~v~ 218 (239)
-++|+|.++-..|. +|.|...-+|++.-+ ..+..++++|+..+|+++.
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~ 76 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWID 76 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEE
Confidence 35777777634564 488876668976532 2567999999998888753
No 17
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=62.00 E-value=15 Score=29.26 Aligned_cols=47 Identities=15% Similarity=0.383 Sum_probs=27.7
Q ss_pred ceEEEEEEecC-CceeeccccCCC-------------eEEeCC--C-CCCc-ceEEEEEecCCeE
Q 044678 170 EVINVKIKGSS-TGWIQMSRNWGQ-------------NWQTSA--Q-LLGQ-SLSFQVTTSDGKM 216 (239)
Q Consensus 170 ~I~sVei~~~~-~~w~~m~r~~g~-------------~W~~~~--~-~~g~-pl~vRiTs~~G~~ 216 (239)
.|.+|||..++ .+|++.....-. .|++.= + +.|. -+.+|-|+.+|++
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~D~~G~~ 106 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRATDESGNV 106 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEEETTS-B
T ss_pred ceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEeeccccc
Confidence 89999999884 569976643211 365442 1 2342 5666888888743
No 18
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=59.33 E-value=20 Score=32.70 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=32.5
Q ss_pred CCcceEEEEEEecCC-ceeeccccCCC-------eEEeCCC-CCC-cceEEEEEecCCeE
Q 044678 167 GAGEVINVKIKGSST-GWIQMSRNWGQ-------NWQTSAQ-LLG-QSLSFQVTTSDGKM 216 (239)
Q Consensus 167 G~~~I~sVei~~~~~-~w~~m~r~~g~-------~W~~~~~-~~g-~pl~vRiTs~~G~~ 216 (239)
|...|++|||..+++ +|++..-.... .|++.-. ..| --+.+|.+|..|++
T Consensus 234 g~~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~~~~G~~~l~vRA~D~~g~~ 293 (317)
T cd02110 234 GGRGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWDLPPGEYELVARATDSTGNV 293 (317)
T ss_pred CCCCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEEcCCCcEEEEEEEECCCCCc
Confidence 336799999998865 89987543211 4555422 234 25777888888854
No 19
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=58.28 E-value=50 Score=26.16 Aligned_cols=59 Identities=15% Similarity=0.211 Sum_probs=35.9
Q ss_pred CccCeEEEEEEEecCCcceEEEEEEec---CC--------ceeeccccCC--CeEEeCCCCCCcceEEEEEec
Q 044678 153 GNPYWILVLVYNVGGAGEVINVKIKGS---ST--------GWIQMSRNWG--QNWQTSAQLLGQSLSFQVTTS 212 (239)
Q Consensus 153 ss~~w~~v~v~n~~G~~~I~sVei~~~---~~--------~w~~m~r~~g--~~W~~~~~~~g~pl~vRiTs~ 212 (239)
.-+||.-+.|+|.+| ...++|+|.+. ++ +.-.+.+..- ..+.....|.+..|.||+.+-
T Consensus 48 ~gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~dP~~g~L~irv~gY 119 (122)
T TIGR02588 48 TGQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSDPRNGQLRLRVAGY 119 (122)
T ss_pred CCEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccCcccCeEEEEEEec
Confidence 357999999999876 56899999964 11 1122222221 134444445444788888753
No 20
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.71 E-value=38 Score=30.97 Aligned_cols=77 Identities=14% Similarity=0.196 Sum_probs=46.1
Q ss_pred EEEEEEEEeccCCceEEEEc-CccCeEEEEEEEecCCcceEEEEEEecCCceeeccccCCCeEEeCCCCCCcceEEEEEe
Q 044678 133 PVLYRRVSCVKSGGVMFEML-GNPYWILVLVYNVGGAGEVINVKIKGSSTGWIQMSRNWGQNWQTSAQLLGQSLSFQVTT 211 (239)
Q Consensus 133 ~i~~~~V~C~~~g~i~~~~~-ss~~w~~v~v~n~~G~~~I~sVei~~~~~~w~~m~r~~g~~W~~~~~~~g~pl~vRiTs 211 (239)
.+.|..| +.+..+.|.+. +++.+ ...+|.+.|.+.+|-.. .| +++|+|+|
T Consensus 47 ~l~wq~l--~~~~~~~~~L~~~sq~~-----~f~~~~s~vAAf~lPan---------------------~G-~l~i~LsS 97 (303)
T PRK10564 47 QLTWQPV--DQSKTQTTQLATGGQQL-----NVAGISGPVAAYSLPAN---------------------IG-ELTLTLSS 97 (303)
T ss_pred cCCceEc--cCCCceEEEeCCCCcce-----ecCCCcccEEEEEcccc---------------------cc-cEEEEEEE
Confidence 3577777 45567788775 45554 12233355554444332 33 78888888
Q ss_pred c-CCeEEEEcc--ccCCCCCCCcEEecCCC
Q 044678 212 S-DGKMVQFDD--VAPPHWQFGDVFEGKQN 238 (239)
Q Consensus 212 ~-~G~~v~~~~--vip~~w~~G~~y~~~~~ 238 (239)
- ..+.|.+.+ ++=++|++=++|.+.+|
T Consensus 98 ~v~~~~VfaPnVlvLD~~~~~~~~y~s~~F 127 (303)
T PRK10564 98 LVNDKSVFAPNVLVLDQNMRPAAFYPSSYF 127 (303)
T ss_pred EecCCcEEeceEEEEcCCCCEEEEecccce
Confidence 3 234677776 45577777777777766
No 21
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=50.42 E-value=9.2 Score=24.09 Aligned_cols=11 Identities=36% Similarity=0.912 Sum_probs=9.4
Q ss_pred cccCCCCCCCc
Q 044678 221 DVAPPHWQFGD 231 (239)
Q Consensus 221 ~vip~~w~~G~ 231 (239)
-+.|+||++|.
T Consensus 10 v~tPanW~pGd 20 (40)
T PF10417_consen 10 VATPANWKPGD 20 (40)
T ss_dssp SBBCTTTCTTS
T ss_pred cccCcCCCCCC
Confidence 48899999985
No 22
>PLN00177 sulfite oxidase; Provisional
Probab=41.15 E-value=60 Score=30.72 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=32.4
Q ss_pred EEEecCCcceEEEEEEecC-Cceeecccc---------------CCC--eEEeCCCCCC-cceEEEEEecCCeE
Q 044678 162 VYNVGGAGEVINVKIKGSS-TGWIQMSRN---------------WGQ--NWQTSAQLLG-QSLSFQVTTSDGKM 216 (239)
Q Consensus 162 v~n~~G~~~I~sVei~~~~-~~w~~m~r~---------------~g~--~W~~~~~~~g-~pl~vRiTs~~G~~ 216 (239)
+...+|...|++|||..++ .+|+..... .++ .|++.-..+| --+-+|-||..|++
T Consensus 289 ~Awsggg~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~~~~~~aW~~w~~~~~~~g~~~l~~RA~D~~G~~ 362 (393)
T PLN00177 289 YALSGGGRGIERVDISVDGGKTWVEASRYQKPGVPYISDDISSDKWAWVLFEATVDVPQSTEIVAKAVDSAANV 362 (393)
T ss_pred EEECCCCccEEEEEEEcCCCCCceeeeeccccccccccccccCCccEEEEEEEEecCCCCeEEEEEEEcCCCCC
Confidence 4455554579999999885 479976431 111 2333323444 24666778887743
No 23
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=40.22 E-value=1.1e+02 Score=22.17 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=20.4
Q ss_pred eeccccC-CCeEEe--CCCCCCcceEEEEEecCCeEE
Q 044678 184 IQMSRNW-GQNWQT--SAQLLGQSLSFQVTTSDGKMV 217 (239)
Q Consensus 184 ~~m~r~~-g~~W~~--~~~~~g~pl~vRiTs~~G~~v 217 (239)
.+|.|.. ...|.. +....+..+.+|++..+|++.
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~ 85 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLP 85 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEE
Confidence 3677654 557864 322334468999987555543
No 24
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=35.53 E-value=79 Score=29.13 Aligned_cols=50 Identities=14% Similarity=0.178 Sum_probs=29.9
Q ss_pred CCcceEEEEEEecC-Cceeecccc--CC----CeEEeCCCC-CC-cceEEEEEecCCeE
Q 044678 167 GAGEVINVKIKGSS-TGWIQMSRN--WG----QNWQTSAQL-LG-QSLSFQVTTSDGKM 216 (239)
Q Consensus 167 G~~~I~sVei~~~~-~~w~~m~r~--~g----~~W~~~~~~-~g-~pl~vRiTs~~G~~ 216 (239)
|.+.|.+|||..++ .+|+...-. .+ -.|.+.-.+ .+ -.+-+|-||..|++
T Consensus 236 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~w~~~w~~~~g~~~i~~RA~D~~G~~ 294 (326)
T cd02113 236 GRGRIRRVDVSFDGGRTWQDARLEGPVLPKALTRFRLPWKWDGRPAVLQSRATDETGYV 294 (326)
T ss_pred CCCCEEEEEEEcCCCCCceECccCCCCCCCceEEEeEEEEcCCCeEEEEEEEEcCCCCC
Confidence 44569999999885 479976542 11 123332122 33 25666888888844
No 25
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=32.82 E-value=1.8e+02 Score=20.56 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=31.6
Q ss_pred eEEEEEEecCCcee---eccccCCCeEEeCCCCCCcceEEEEEecCCeEEEEc
Q 044678 171 VINVKIKGSSTGWI---QMSRNWGQNWQTSAQLLGQSLSFQVTTSDGKMVQFD 220 (239)
Q Consensus 171 I~sVei~~~~~~w~---~m~r~~g~~W~~~~~~~g~pl~vRiTs~~G~~v~~~ 220 (239)
-++|+|.|+=.+|+ +|.|..+. |...-.|+...+..|+. .+|+++...
T Consensus 12 a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~L~~g~y~YkF~-Vdg~w~~d~ 62 (79)
T cd02859 12 GKEVYVTGSFDNWKKKIPLEKSGKG-FSATLRLPPGKYQYKFI-VDGEWRHSP 62 (79)
T ss_pred CcEEEEEEEcCCCCccccceECCCC-cEEEEEcCCCCEEEEEE-ECCEEEeCC
Confidence 47999998734576 48887654 76654444336666666 367887765
No 26
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=31.97 E-value=76 Score=29.66 Aligned_cols=50 Identities=22% Similarity=0.530 Sum_probs=31.1
Q ss_pred CCcceEEEEEEecC-Cceeeccc--cCCC----eEEeCC-C-CCCc-ceEEEEEecCCeE
Q 044678 167 GAGEVINVKIKGSS-TGWIQMSR--NWGQ----NWQTSA-Q-LLGQ-SLSFQVTTSDGKM 216 (239)
Q Consensus 167 G~~~I~sVei~~~~-~~w~~m~r--~~g~----~W~~~~-~-~~g~-pl~vRiTs~~G~~ 216 (239)
|...|++|||..++ .+|+...- ..+. .|++.= + ..|. -+.+|-||..|++
T Consensus 286 G~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D~~G~~ 345 (367)
T cd02114 286 GGSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATNNDGQT 345 (367)
T ss_pred CCCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEcCCCCC
Confidence 34679999999885 47997643 2222 355542 2 2342 5666888888844
No 27
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=31.78 E-value=72 Score=25.18 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=18.2
Q ss_pred cceEEEEEecCCe-EEEEccccCCCCCCCcE
Q 044678 203 QSLSFQVTTSDGK-MVQFDDVAPPHWQFGDV 232 (239)
Q Consensus 203 ~pl~vRiTs~~G~-~v~~~~vip~~w~~G~~ 232 (239)
..++|.|||...+ .|++..+.|++|+.|..
T Consensus 71 ~~~~F~i~D~~~~i~V~Y~G~~Pd~F~eg~~ 101 (131)
T PF03100_consen 71 NTLTFTITDGGKEIPVVYTGPLPDLFREGQG 101 (131)
T ss_dssp SEEEEEEE-SS-EEEEEEES--CTT--TTSE
T ss_pred CEEEEEEEECCcEEEEEECCCCCccccCCCe
Confidence 3789999987553 37778999999988764
No 28
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.08 E-value=1.4e+02 Score=21.10 Aligned_cols=44 Identities=30% Similarity=0.552 Sum_probs=27.3
Q ss_pred EEEEEEecCCce--eeccccCCCeEEeCCCC-CCcceEEEEEecCCeEE
Q 044678 172 INVKIKGSSTGW--IQMSRNWGQNWQTSAQL-LGQSLSFQVTTSDGKMV 217 (239)
Q Consensus 172 ~sVei~~~~~~w--~~m~r~~g~~W~~~~~~-~g~pl~vRiTs~~G~~v 217 (239)
++|+|.++-..| .+|.|.....|+..-++ +| .+..|+. .+|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~l~~G-~y~Ykf~-vdg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVELRPG-RYEYKFV-VDGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEeCCCC-cEEEEEE-ECCEEe
Confidence 788998873457 45888764578765444 34 4455554 356665
No 29
>cd02111 eukary_SO_Moco molybdopterin binding domain of sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=28.55 E-value=1.5e+02 Score=27.65 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=32.9
Q ss_pred EEEecCCcceEEEEEEecC-CceeeccccC----------C--CeEEeCCCC-C-C-cceEEEEEecCCeE
Q 044678 162 VYNVGGAGEVINVKIKGSS-TGWIQMSRNW----------G--QNWQTSAQL-L-G-QSLSFQVTTSDGKM 216 (239)
Q Consensus 162 v~n~~G~~~I~sVei~~~~-~~w~~m~r~~----------g--~~W~~~~~~-~-g-~pl~vRiTs~~G~~ 216 (239)
+...+|...|++|||..++ .+|+...-.. + -.|.+.-.+ . + --+.+|-|+..|++
T Consensus 269 ~A~sgg~~~I~rVEVS~DgG~tW~~A~l~~~~~~~~~~~~~aW~~W~~~~~~~~~g~~~l~~RA~D~~G~~ 339 (365)
T cd02111 269 YAWSGGGRKIVRVDVSLDGGRTWKVAELEQEENVWPSGRKWAWTLWEATVPVPAGKEAEIIAKAVDSAYNV 339 (365)
T ss_pred EEECCCCCcEEEEEEECCCCCcceeCCcCCCCCccccCCCCEeEEEEEEEEeCCCCeEEEEEEEEcCCCCc
Confidence 3444555689999999885 4799765421 1 134444222 2 2 14666888888754
No 30
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.46 E-value=99 Score=25.18 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEEEecCCe-EEEEccccCCCCCCCc
Q 044678 204 SLSFQVTTSDGK-MVQFDDVAPPHWQFGD 231 (239)
Q Consensus 204 pl~vRiTs~~G~-~v~~~~vip~~w~~G~ 231 (239)
.++|+|||.... .|.+..++|+.|+-|+
T Consensus 72 ~~~F~ltD~~~~i~V~Y~G~lPd~F~eg~ 100 (148)
T PRK13254 72 TVRFVVTDGNATVPVVYTGILPDLFREGQ 100 (148)
T ss_pred EEEEEEEeCCeEEEEEECCCCCccccCCC
Confidence 678888887443 2667789999988775
No 31
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=27.29 E-value=85 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=21.3
Q ss_pred ceEEEEEecCCeE-EEEccccCCCCCCCc
Q 044678 204 SLSFQVTTSDGKM-VQFDDVAPPHWQFGD 231 (239)
Q Consensus 204 pl~vRiTs~~G~~-v~~~~vip~~w~~G~ 231 (239)
.++|+|||...+. |.+..++|+-|+.|+
T Consensus 73 ~v~F~vtD~~~~v~V~Y~GilPDlFrEGq 101 (155)
T PRK13159 73 KVSFTVIDKNAATQVEYTGILPDLFRDNQ 101 (155)
T ss_pred EEEEEEEcCCcEEEEEEccCCCccccCCC
Confidence 5788888765543 667789999998875
No 32
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=23.41 E-value=1e+02 Score=25.50 Aligned_cols=29 Identities=17% Similarity=0.527 Sum_probs=22.0
Q ss_pred ceEEEEEecCCeE-EEEccccCCCCCCCcE
Q 044678 204 SLSFQVTTSDGKM-VQFDDVAPPHWQFGDV 232 (239)
Q Consensus 204 pl~vRiTs~~G~~-v~~~~vip~~w~~G~~ 232 (239)
.++|+|||...+. |++..++|+.|+.|+-
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~g 108 (159)
T PRK13150 79 KVNFSLYDAEGSVTVSYEGILPDLFREGQG 108 (159)
T ss_pred EEEEEEEcCCcEEEEEEeccCCccccCCCe
Confidence 6788888876654 6677899999988763
No 33
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=23.37 E-value=2.3e+02 Score=19.64 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=29.2
Q ss_pred eEEEEEEecCCc-e----eecc-ccCCCeEEeCC--CCC-C-cceEEEEEecCCeEEEE
Q 044678 171 VINVKIKGSSTG-W----IQMS-RNWGQNWQTSA--QLL-G-QSLSFQVTTSDGKMVQF 219 (239)
Q Consensus 171 I~sVei~~~~~~-w----~~m~-r~~g~~W~~~~--~~~-g-~pl~vRiTs~~G~~v~~ 219 (239)
-++|+|...... | .+|. +....+|++.- .+. | .-+.+||+..+|++...
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~g~~~~~ 80 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDDGETPEV 80 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETTTEEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCCCcEEEE
Confidence 345555544222 2 4677 46667896543 344 4 38999999988755443
No 34
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=22.66 E-value=1.3e+02 Score=23.91 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=22.9
Q ss_pred cccCCEEEEEEEEEEecc---CCceEEEEcC
Q 044678 126 EYKGGIVPVLYRRVSCVK---SGGVMFEMLG 153 (239)
Q Consensus 126 ~~~~G~v~i~~~~V~C~~---~g~i~~~~~s 153 (239)
++..|.+-+.||.|+=+- .|.|.|.++.
T Consensus 96 ~L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~~ 126 (127)
T COG2372 96 PLKAGVYTVDWRVVSSDGHVVKGSISFSVGA 126 (127)
T ss_pred cCCCCcEEEEEEEEecCCcEeccEEEEEecC
Confidence 478999999999999863 5678888753
No 35
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.11 E-value=1.2e+02 Score=25.07 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=20.6
Q ss_pred ceEEEEEecCCeE-EEEccccCCCCCCCc
Q 044678 204 SLSFQVTTSDGKM-VQFDDVAPPHWQFGD 231 (239)
Q Consensus 204 pl~vRiTs~~G~~-v~~~~vip~~w~~G~ 231 (239)
.++|+|||..... |.+..++|+.|+.|+
T Consensus 79 ~v~F~vtD~~~~v~V~Y~GilPDlFrEG~ 107 (160)
T PRK13165 79 KVSFTLYDAGGSVTVTYEGILPDLFREGQ 107 (160)
T ss_pred EEEEEEEcCCeEEEEEEcccCCccccCCC
Confidence 5688888765443 566789999998875
No 36
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.09 E-value=2.6e+02 Score=20.37 Aligned_cols=33 Identities=24% Similarity=0.443 Sum_probs=21.0
Q ss_pred eeccccCCCeEEeC--CCCCCcceEEEEEecCCeE
Q 044678 184 IQMSRNWGQNWQTS--AQLLGQSLSFQVTTSDGKM 216 (239)
Q Consensus 184 ~~m~r~~g~~W~~~--~~~~g~pl~vRiTs~~G~~ 216 (239)
.+|.|..+.+|.+. ..+.+.-+.+||...+++.
T Consensus 39 ~~m~~~~~gvw~~~v~~~~~g~~Y~y~i~~~~~~~ 73 (100)
T cd02860 39 VQMKRGENGVWSVTLDGDLEGYYYLYEVKVYKGET 73 (100)
T ss_pred EeeecCCCCEEEEEeCCccCCcEEEEEEEEeceEE
Confidence 36777667788643 3455667888887664433
No 37
>cd02112 eukary_NR_Moco molybdopterin binding domain of eukaryotic nitrate reductase (NR). Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Eukaryotic assimilatory nitrate reductases are cytosolic homodimeric enzymes with three prosthetic groups, flavin adenine dinucleotide (FAD), cytochrome b557, and Mo cofactor, which are located in three functional domains. Common features of all known members of the sulfite oxidase (SO) family of molybdopterin binding domains are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=20.24 E-value=3e+02 Score=25.96 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=31.5
Q ss_pred EEecCCcceEEEEEEecC-Cceeecccc--C--------C--CeEEeCCCC---CCc-ceEEEEEecCCeE
Q 044678 163 YNVGGAGEVINVKIKGSS-TGWIQMSRN--W--------G--QNWQTSAQL---LGQ-SLSFQVTTSDGKM 216 (239)
Q Consensus 163 ~n~~G~~~I~sVei~~~~-~~w~~m~r~--~--------g--~~W~~~~~~---~g~-pl~vRiTs~~G~~ 216 (239)
...+|...|++|||..++ .+|+..... . + -.|++.-.+ +|. -+.+|-|+..|++
T Consensus 294 A~sg~g~~I~rVeVS~DgG~tW~~A~L~~~~~~~~~~~~~aW~~W~~~~~~~~~~G~~~l~~RA~D~~G~~ 364 (386)
T cd02112 294 AYAGGGRRVTRVEVSLDDGKSWKLASIDYPEDPTKYGKCWCWCFWSLDVPLSELLAAKEICVRAWDESMNT 364 (386)
T ss_pred EEcCCCCcEEEEEEEcCCCCCceeCCCCCCCCccccCCCCEeEEEEEeeecccCCCcEEEEEEEEcCCCCc
Confidence 343443479999999885 479976432 1 1 134444221 342 5666778887743
Done!