BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044679
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 181 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGE 240
PG V+IYT R C R +++ +E D S + E+++ G
Sbjct: 2 PGSMVDVIIYT------RPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRN 55
Query: 241 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARV 278
T P++FI +VGG D+L L + GKL +L++ ++
Sbjct: 56 TF--PQIFIGSVHVGGCDDLYALEDEGKLDSLLKTGKL 91
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 204 CNRVRSIFE---VNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDEL 260
C V+++F+ V +V + + G L ++ + G+ TVP VF+ G+++GG +
Sbjct: 32 CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQH-TVPNVFVCGKHIGGCTDT 90
Query: 261 TELNESGKLGRMLRSA 276
+LN G L ML A
Sbjct: 91 VKLNRKGDLELMLAEA 106
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
TVP V+I G+++GG +L L ++GKL +L+
Sbjct: 77 TVPNVYINGKHIGGNSDLETLKKNGKLAEILK 108
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 204 CNRVRSIFE---VNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDEL 260
C + +F VN V + + QF + L + G TV PR+F+ G ++GG +
Sbjct: 40 CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTV--PRIFVNGTFIGGATDT 97
Query: 261 TELNESGKL 269
L++ GKL
Sbjct: 98 HRLHKEGKL 106
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 204 CNRVRSIFE---VNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDEL 260
C + +F VN V + + QF + L + G TV PR+F+ G ++GG +
Sbjct: 62 CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTV--PRIFVNGTFIGGATDT 119
Query: 261 TELNESGKL 269
L++ GKL
Sbjct: 120 HRLHKEGKL 128
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
TVP V+I G+++GG +L L ++GKL +L+
Sbjct: 94 TVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 204 CNRVRSIFE---VNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDEL 260
C + +F VN V + + QF + L + G TV PR+F+ G ++GG +
Sbjct: 48 CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTV--PRIFVNGTFIGGATDT 105
Query: 261 TELNESGKL 269
L++ GKL
Sbjct: 106 HRLHKEGKL 114
>pdb|1SJ6|A Chain A, Nmr Structure And Regulated Expression In Apl Cell Of
Human Sh3bgrl3
Length = 101
Score = 35.8 bits (81), Expect = 0.035, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%)
Query: 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVP 245
G+ +Y+TS+ G R + V I + R+ D+S +E++ L G T P
Sbjct: 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRALAGNPKATPP 62
Query: 246 RVFIKGRYVGGVDELTELNESGKLGRMLRSA 276
++ +Y G + E E L L+ A
Sbjct: 63 QIVNGDQYCGDYELFVEAVEQNTLQEFLKLA 93
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 231 NELKDLF----GGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARV 278
NEL+D F GG+TV PR+F +GG +L E++ LG +L S V
Sbjct: 61 NELRDYFEQITGGKTV--PRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGV 110
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 231 NELKDLF----GGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARV 278
NEL+D F GG+TV PR+F +GG +L E++ LG +L S V
Sbjct: 61 NELRDYFEQITGGKTV--PRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGV 110
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
TVP V+I G+++GG +L L ++GKL +L+
Sbjct: 74 TVPNVYINGKHIGGNSDLETLKKNGKLAEILK 105
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 35.4 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 181 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGE 240
PG +++YT R C R R + + V + D S E+ G
Sbjct: 2 PGSMKEIILYT------RPNCPYCKRARDLLDKKGVKYTDIDAST--SLRQEMVQRANGR 53
Query: 241 TVTVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
T P++FI +VGG D+L L GKL +L+
Sbjct: 54 N-TFPQIFIGDYHVGGCDDLYALENKGKLDSLLQ 86
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 35.0 bits (79), Expect = 0.059, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
T P++++KG VGG+D + EL E+G+L +LR
Sbjct: 72 TYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>pdb|1J0F|A Chain A, Solution Structure Of The Sh3 Domain Binding Glutamic
Acid- Rich Protein Like 3
Length = 100
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%)
Query: 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVP 245
G+ +Y+TS+ G R + V I + R+ D+S +E++ L G T P
Sbjct: 10 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 69
Query: 246 RVFIKGRYVGGVDELTELNESGKLGRMLRSA 276
++ Y G + E E L L+ A
Sbjct: 70 QIVNGNHYCGDYELFVEAVEQDTLQEFLKLA 100
>pdb|1T1V|A Chain A, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
pdb|1T1V|B Chain B, Crystal Structure Of The Glutaredoxin-Like Protein
Sh3bgrl3 At 1.6 A Resolution
Length = 93
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%)
Query: 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVP 245
G+ +Y+TS+ G R + V I + R+ D+S +E++ L G T P
Sbjct: 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 62
Query: 246 RVFIKGRYVGGVDELTELNESGKLGRMLRSA 276
++ Y G + E E L L+ A
Sbjct: 63 QIVNGNHYCGDYELFVEAVEQDTLQEFLKLA 93
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 205 NRVRSIFE---VNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELT 261
+ V+S+F+ V+ +V + ++ G + ++ + G+ TVP VFI G+++GG +
Sbjct: 32 SEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQH-TVPNVFIGGKHIGGCTDTV 90
Query: 262 ELNESGKLGRMLRSA 276
+L G+L +L A
Sbjct: 91 KLYRKGELEPLLSEA 105
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 204 CNRVRSIFE---VNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDEL 260
CNRV+ + + V + ++S Q + L G TV P VFI G+ +GG D +
Sbjct: 34 CNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTV--PNVFIGGKQIGGCDTV 91
Query: 261 TELNESGKLGRMLRSA 276
E ++ +L +L+ A
Sbjct: 92 VEKHQRNELLPLLQDA 107
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 240 ETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSAR 277
E T+P++++ ++GG D +T + SG+L +L A+
Sbjct: 71 EWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQ 108
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
T+P+V++ G +VGG D L +++++G L L+
Sbjct: 76 TIPQVYLNGEFVGGCDILLQMHQNGDLVEELK 107
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 204 CNRVRSIFE---VNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDEL 260
CNRV+ + + V + ++S Q + L G TV P VFI G+ +GG D +
Sbjct: 33 CNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTV--PNVFIGGKQIGGCDTV 90
Query: 261 TELNESGKLGRMLRSA 276
E ++ +L +L+ A
Sbjct: 91 VEKHQRNELLPLLQDA 106
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 32.7 bits (73), Expect = 0.28, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPR 246
V IYT + T C+R +++ V E + + E+ G TVP+
Sbjct: 3 VEIYT------KETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG--RTTVPQ 54
Query: 247 VFIKGRYVGGVDELTELNESGKLGRMLR 274
+FI +++GG D+L L+ G L +L+
Sbjct: 55 IFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
TVP++FI +++GG D+L L+ G L +L+
Sbjct: 51 TVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 32.3 bits (72), Expect = 0.38, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRS 275
++P++FI +++GG D++ L+ +GKL +L S
Sbjct: 67 SLPQIFIDDQHIGGCDDIYALDGAGKLDPLLHS 99
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 231 NELKDLFGGET--VTVPRVFIKGRYVGGVDELTELNESGKL 269
NE++D T TVPRVFI +GG +L L +SG+L
Sbjct: 54 NEIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGEL 94
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 32.0 bits (71), Expect = 0.45, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 231 NELKDLFGGET--VTVPRVFIKGRYVGGVDELTELNESGKL 269
NE++D T TVPRVFI +GG +L L +SG+L
Sbjct: 55 NEIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGEL 95
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
T P+++++G VGG+D + EL ++G+L +L+
Sbjct: 70 TYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 74/197 (37%), Gaps = 30/197 (15%)
Query: 82 LQDLKPRISSNSVSAASPTTQKQNITPQLRETESMGTELKTNNKAGSRADHHTEGEGFKP 141
+QD I + S + +P Q + I P E ES+G E + + D E E
Sbjct: 105 VQDFGKVIYTLSALSWTPIAQNRGIMPFPTEEESVGDEDIYSGLSDQIDDTVEEDEDLYD 164
Query: 142 VKENIFIVRDRMEREKEGKQAKYEKLIRDPLSDFPEKCPPGGSDGVVI---------YTT 192
EN E EG + YE L+R P K + YT
Sbjct: 165 CVEN---------EEAEGDEI-YEDLMRSEPVSMPPKMTEYDKRCCCLREIQQTEEKYTD 214
Query: 193 SLRGVRRTY-EDCNRVRSIFEVNRVVTDERD-VSLHGQFLNELKDLFGGE-TVTVPRVFI 249
+L +++ + + R ++ + + D + +H FL E+K+ G + +VFI
Sbjct: 215 TLGSIQQHFLKPLQRFLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGTPGAANLYQVFI 274
Query: 250 K--------GRYVGGVD 258
K GRY V+
Sbjct: 275 KYKERFLVYGRYCSQVE 291
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
TVP +F+ +VGG D+ + +SG L ++L+
Sbjct: 70 TVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101
>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology
Domain
Length = 208
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 217 VTDERDVSLHGQFLNELKDLFGGE-TVTVPRVFIK--------GRYVGGVD 258
V E S+H FL ELKD G T+ +VFIK GRY V+
Sbjct: 71 VNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKERFLVYGRYCSQVE 121
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
T P++++ G VGG D + E+ + G+L ++++
Sbjct: 70 TFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 101
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 216 VVTDERDVSLHGQFLNELKDLFGGE-TVTVPRVFIK--------GRYVGGVD 258
V E S+H FL ELKD G T+ +VFIK GRY V+
Sbjct: 68 FVNIEELFSVHTHFLKELKDALAGPGATTLYQVFIKYKERFLVYGRYCSQVE 119
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 243 TVPRVFIKGRYVGGVDEL 260
TVP+VFI G+++GG D+L
Sbjct: 219 TVPQVFIGGKHIGGSDDL 236
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
T P++++ G VGG D + E+ + G+L ++++
Sbjct: 90 TFPQLWVDGELVGGCDIVIEMYQRGELQQLIK 121
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 204 CNRVRSIFEVNRVVTDER---DVSLHGQFLNELKDLFGGETV----TVPRVFIKGRYVGG 256
C + FE N + DE D + +F +E G+ + TVP++FI ++GG
Sbjct: 17 CVWAKQWFEENNIAFDETIIDDYAQRSKFYDEXNQ--SGKVIFPISTVPQIFIDDEHIGG 74
Query: 257 VDEL 260
EL
Sbjct: 75 FTEL 78
>pdb|2LQO|A Chain A, Mrx1 Reduced
pdb|2LQQ|A Chain A, Oxidized Mrx1
Length = 92
Score = 28.5 bits (62), Expect = 5.3, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVP 245
+ IYTTS G C R+++ NR+ DE D+ H + E G TVP
Sbjct: 5 ALTIYTTSWCGY------CLRLKTALTANRIAYDEVDIE-HNRAAAEFVGSVNGGNRTVP 57
Query: 246 RV 247
V
Sbjct: 58 TV 59
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 231 NELKDLFGGET--VTVPRVFIKGRYVGGVDELTELNESGKL 269
NE++D T TVPRVFI +GG +L +++ G+L
Sbjct: 54 NEIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGEL 94
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 243 TVPRVFIKGRYVGGVDEL 260
TVP ++I G+++GG D+L
Sbjct: 82 TVPNIYINGKHIGGNDDL 99
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 220 ERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELNESGKLGRMLR 274
E D HG+ L E L G TVP + + G GG +E+ +L+ GKL L+
Sbjct: 48 ELDKHGHGEELQEYIKLVTGRG-TVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQ 101
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 28.1 bits (61), Expect = 7.2, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSA 276
T P+++I G + GG D E +SG+L + A
Sbjct: 73 TFPQLYIDGEFFGGCDITVEAYKSGELQEQVEKA 106
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 28.1 bits (61), Expect = 7.5, Method: Composition-based stats.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 243 TVPRVFIKGRYVGGVDEL 260
TVP ++I G+++GG D+L
Sbjct: 74 TVPNIYINGKHIGGNDDL 91
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 243 TVPRVFIKGRYVGGVDEL 260
TVP ++I G+++GG D+L
Sbjct: 318 TVPNIYINGKHIGGNDDL 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,217,433
Number of Sequences: 62578
Number of extensions: 431974
Number of successful extensions: 1168
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1127
Number of HSP's gapped (non-prelim): 52
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)