Query 044679
Match_columns 333
No_of_seqs 300 out of 1244
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:40:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2824 Glutaredoxin-related p 100.0 7.4E-50 1.6E-54 376.6 14.0 160 170-333 116-281 (281)
2 cd03031 GRX_GRX_like Glutaredo 100.0 1.1E-48 2.3E-53 341.9 16.2 140 186-328 1-147 (147)
3 PRK10824 glutaredoxin-4; Provi 99.9 1.6E-22 3.5E-27 170.7 11.4 95 183-280 13-107 (115)
4 cd03030 GRX_SH3BGR Glutaredoxi 99.9 1.2E-22 2.6E-27 165.1 9.0 88 187-274 2-91 (92)
5 TIGR00365 monothiol glutaredox 99.9 8.1E-22 1.8E-26 160.4 11.1 88 183-273 10-97 (97)
6 TIGR02189 GlrX-like_plant Glut 99.9 9.5E-22 2.1E-26 160.6 10.9 88 183-278 6-96 (99)
7 PHA03050 glutaredoxin; Provisi 99.9 2.3E-21 4.9E-26 161.3 11.2 90 183-280 11-106 (108)
8 cd03028 GRX_PICOT_like Glutare 99.8 9E-21 1.9E-25 151.5 10.2 85 183-270 6-90 (90)
9 TIGR02181 GRX_bact Glutaredoxi 99.8 5.6E-20 1.2E-24 141.5 9.3 79 187-273 1-79 (79)
10 PRK10638 glutaredoxin 3; Provi 99.8 1.7E-19 3.6E-24 141.2 10.5 82 185-274 2-83 (83)
11 PTZ00062 glutaredoxin; Provisi 99.8 6.3E-19 1.4E-23 161.8 11.5 90 183-275 111-200 (204)
12 COG0278 Glutaredoxin-related p 99.8 8.5E-19 1.8E-23 144.9 9.2 91 183-276 13-104 (105)
13 KOG1752 Glutaredoxin and relat 99.8 1.2E-18 2.6E-23 144.9 9.9 88 183-278 12-102 (104)
14 cd03418 GRX_GRXb_1_3_like Glut 99.8 2.5E-18 5.4E-23 130.1 10.2 74 186-267 1-75 (75)
15 cd03027 GRX_DEP Glutaredoxin ( 99.8 2.7E-18 5.8E-23 131.0 9.2 73 185-265 1-73 (73)
16 TIGR02180 GRX_euk Glutaredoxin 99.7 2.1E-17 4.6E-22 126.5 8.8 79 187-273 1-84 (84)
17 COG0695 GrxC Glutaredoxin and 99.7 3.9E-17 8.5E-22 128.9 8.7 76 186-269 2-79 (80)
18 cd03419 GRX_GRXh_1_2_like Glut 99.7 5.7E-17 1.2E-21 124.1 8.2 79 186-272 1-82 (82)
19 cd03029 GRX_hybridPRX5 Glutare 99.7 1.6E-16 3.6E-21 120.6 8.9 70 186-264 2-71 (72)
20 cd02066 GRX_family Glutaredoxi 99.7 4.6E-16 9.9E-21 113.7 9.7 72 186-265 1-72 (72)
21 TIGR02190 GlrX-dom Glutaredoxi 99.7 4.4E-16 9.4E-21 121.2 9.8 73 183-264 6-78 (79)
22 KOG0911 Glutaredoxin-related p 99.7 2.5E-16 5.4E-21 146.1 9.4 91 182-275 136-226 (227)
23 TIGR02183 GRXA Glutaredoxin, G 99.6 8.2E-16 1.8E-20 121.9 9.4 74 187-267 2-81 (86)
24 PRK11200 grxA glutaredoxin 1; 99.6 1.1E-15 2.4E-20 119.8 9.7 74 186-266 2-81 (85)
25 PF04908 SH3BGR: SH3-binding, 99.6 3.4E-15 7.4E-20 123.4 8.6 89 186-274 2-97 (99)
26 PF00462 Glutaredoxin: Glutare 99.6 8.4E-15 1.8E-19 107.7 8.2 60 187-254 1-60 (60)
27 PRK12759 bifunctional gluaredo 99.5 3.7E-14 8.1E-19 141.7 10.0 86 185-280 2-95 (410)
28 TIGR02194 GlrX_NrdH Glutaredox 99.4 7.3E-13 1.6E-17 101.0 7.9 64 187-259 1-65 (72)
29 PRK10329 glutaredoxin-like pro 99.4 1.5E-12 3.3E-17 102.9 9.0 65 186-259 2-66 (81)
30 TIGR02196 GlrX_YruB Glutaredox 99.2 2E-10 4.4E-15 84.3 9.7 66 186-259 1-66 (74)
31 cd02976 NrdH NrdH-redoxin (Nrd 99.1 5E-10 1.1E-14 82.3 9.2 66 186-259 1-66 (73)
32 TIGR02200 GlrX_actino Glutared 98.9 1.6E-08 3.4E-13 75.9 10.0 66 186-258 1-67 (77)
33 cd02973 TRX_GRX_like Thioredox 98.7 3E-08 6.6E-13 73.5 6.7 59 186-256 2-65 (67)
34 KOG4023 Uncharacterized conser 98.6 3.4E-08 7.3E-13 82.2 4.7 92 186-278 3-101 (108)
35 cd03041 GST_N_2GST_N GST_N fam 98.5 6.6E-07 1.4E-11 68.9 8.9 70 187-264 2-73 (77)
36 cd03040 GST_N_mPGES2 GST_N fam 98.4 1.8E-06 4E-11 65.6 8.9 68 186-264 1-72 (77)
37 cd00570 GST_N_family Glutathio 98.4 8.2E-07 1.8E-11 63.3 5.5 68 188-263 2-69 (71)
38 cd03037 GST_N_GRX2 GST_N famil 98.3 2.7E-06 5.9E-11 63.8 7.6 68 188-265 2-70 (71)
39 cd03055 GST_N_Omega GST_N fami 98.2 7.3E-06 1.6E-10 64.9 7.5 73 182-263 14-87 (89)
40 cd03036 ArsC_like Arsenate Red 98.1 4.8E-06 1E-10 69.2 4.6 45 187-237 1-45 (111)
41 cd03059 GST_N_SspA GST_N famil 98.0 1.7E-05 3.7E-10 59.1 7.0 69 187-264 1-69 (73)
42 cd02977 ArsC_family Arsenate R 98.0 8.2E-06 1.8E-10 66.5 4.4 45 187-237 1-45 (105)
43 PF05768 DUF836: Glutaredoxin- 98.0 7.6E-05 1.6E-09 58.6 9.4 53 186-251 1-57 (81)
44 TIGR00411 redox_disulf_1 small 97.9 6.8E-05 1.5E-09 56.8 8.3 55 186-252 2-62 (82)
45 cd03060 GST_N_Omega_like GST_N 97.9 3.4E-05 7.3E-10 58.1 6.5 66 188-262 2-68 (71)
46 PRK01655 spxA transcriptional 97.9 2.5E-05 5.3E-10 67.1 6.2 45 187-237 2-46 (131)
47 cd03051 GST_N_GTT2_like GST_N 97.9 2.7E-05 5.8E-10 57.7 5.5 67 188-262 2-71 (74)
48 PF13417 GST_N_3: Glutathione 97.8 3.9E-05 8.5E-10 58.6 5.9 68 189-265 1-68 (75)
49 cd03045 GST_N_Delta_Epsilon GS 97.8 6E-05 1.3E-09 56.4 6.3 69 187-263 1-71 (74)
50 TIGR01617 arsC_related transcr 97.8 5.4E-05 1.2E-09 63.3 6.2 45 187-237 1-45 (117)
51 cd03056 GST_N_4 GST_N family, 97.7 0.00011 2.5E-09 54.4 6.6 67 188-262 2-70 (73)
52 cd03032 ArsC_Spx Arsenate Redu 97.7 7.8E-05 1.7E-09 62.2 6.2 45 187-237 2-46 (115)
53 cd03026 AhpF_NTD_C TRX-GRX-lik 97.6 0.00013 2.7E-09 58.7 6.1 59 185-255 14-77 (89)
54 PRK12559 transcriptional regul 97.6 0.0001 2.3E-09 63.4 5.4 45 187-237 2-46 (131)
55 PRK13344 spxA transcriptional 97.6 0.0001 2.2E-09 63.5 5.3 44 187-236 2-45 (132)
56 PHA02125 thioredoxin-like prot 97.6 0.00034 7.3E-09 53.8 7.5 55 187-254 2-56 (75)
57 cd03035 ArsC_Yffb Arsenate Red 97.5 0.00013 2.9E-09 60.4 4.5 45 187-237 1-45 (105)
58 TIGR00412 redox_disulf_2 small 97.4 0.00041 8.8E-09 53.7 6.4 55 186-254 2-60 (76)
59 cd03054 GST_N_Metaxin GST_N fa 97.4 0.00076 1.7E-08 50.7 7.6 60 196-265 11-70 (72)
60 cd03033 ArsC_15kD Arsenate Red 97.3 0.00028 6.1E-09 59.4 4.7 45 187-237 2-46 (113)
61 PF13192 Thioredoxin_3: Thiore 97.3 0.00081 1.8E-08 52.0 6.5 46 201-253 10-59 (76)
62 cd03058 GST_N_Tau GST_N family 97.2 0.0014 3E-08 49.4 7.0 69 187-263 1-69 (74)
63 cd03053 GST_N_Phi GST_N family 97.2 0.0015 3.4E-08 49.1 7.1 70 187-264 2-73 (76)
64 cd02975 PfPDO_like_N Pyrococcu 97.1 0.00081 1.8E-08 55.7 5.1 53 185-249 23-81 (113)
65 cd03052 GST_N_GDAP1 GST_N fami 97.0 0.0018 4E-08 49.6 5.9 69 187-263 1-71 (73)
66 cd03042 GST_N_Zeta GST_N famil 97.0 0.0019 4.1E-08 47.9 5.7 68 188-263 2-71 (73)
67 cd03076 GST_N_Pi GST_N family, 97.0 0.0034 7.3E-08 47.7 7.1 69 187-264 2-70 (73)
68 cd03061 GST_N_CLIC GST_N famil 97.0 0.0049 1.1E-07 50.4 8.3 77 186-265 5-83 (91)
69 cd02947 TRX_family TRX family; 96.9 0.0051 1.1E-07 45.6 7.4 57 187-255 14-77 (93)
70 cd01659 TRX_superfamily Thiore 96.9 0.0033 7.2E-08 42.0 5.7 56 187-251 1-61 (69)
71 cd03039 GST_N_Sigma_like GST_N 96.9 0.0039 8.4E-08 46.7 6.4 68 188-263 2-69 (72)
72 PRK10387 glutaredoxin 2; Provi 96.8 0.0048 1E-07 54.7 7.4 70 187-266 1-71 (210)
73 cd02949 TRX_NTR TRX domain, no 96.8 0.011 2.3E-07 46.9 8.7 57 187-255 17-81 (97)
74 cd03049 GST_N_3 GST_N family, 96.8 0.0036 7.9E-08 46.9 5.6 66 188-262 2-70 (73)
75 KOG3029 Glutathione S-transfer 96.7 0.0042 9E-08 60.8 7.2 84 185-279 89-178 (370)
76 TIGR02182 GRXB Glutaredoxin, G 96.7 0.0045 9.7E-08 56.1 6.9 68 189-266 2-70 (209)
77 COG1393 ArsC Arsenate reductas 96.7 0.0022 4.7E-08 54.6 4.5 46 186-237 2-47 (117)
78 cd03048 GST_N_Ure2p_like GST_N 96.6 0.0076 1.7E-07 46.1 6.7 68 187-263 2-74 (81)
79 TIGR00014 arsC arsenate reduct 96.6 0.003 6.5E-08 52.9 4.7 45 187-237 1-45 (114)
80 cd03038 GST_N_etherase_LigE GS 96.6 0.0049 1.1E-07 47.7 5.6 74 188-264 2-79 (84)
81 cd03034 ArsC_ArsC Arsenate Red 96.6 0.003 6.6E-08 52.6 4.7 45 187-237 1-45 (112)
82 cd03080 GST_N_Metaxin_like GST 96.6 0.011 2.3E-07 45.1 7.0 68 187-264 2-70 (75)
83 TIGR01616 nitro_assoc nitrogen 96.5 0.0039 8.5E-08 53.6 5.0 44 186-235 2-45 (126)
84 PRK10853 putative reductase; P 96.5 0.0037 8E-08 53.0 4.5 45 187-237 2-46 (118)
85 TIGR01295 PedC_BrcD bacterioci 96.5 0.01 2.2E-07 50.2 7.1 66 185-257 25-106 (122)
86 PLN03165 chaperone protein dna 96.4 0.0036 7.8E-08 53.2 4.0 50 283-332 40-93 (111)
87 COG4545 Glutaredoxin-related p 96.4 0.0085 1.8E-07 48.2 5.8 66 188-260 5-81 (85)
88 PRK10026 arsenate reductase; P 96.4 0.0052 1.1E-07 54.1 5.0 47 185-237 2-48 (141)
89 cd02953 DsbDgamma DsbD gamma f 96.4 0.011 2.4E-07 47.2 6.3 56 186-249 14-78 (104)
90 TIGR02187 GlrX_arch Glutaredox 96.3 0.013 2.9E-07 53.5 7.1 55 185-251 135-194 (215)
91 cd03050 GST_N_Theta GST_N fami 96.2 0.022 4.7E-07 43.1 6.8 68 188-263 2-71 (76)
92 PF00085 Thioredoxin: Thioredo 96.0 0.028 6.1E-07 43.5 6.6 58 186-255 20-85 (103)
93 PTZ00051 thioredoxin; Provisio 95.9 0.05 1.1E-06 42.5 7.8 58 187-256 22-86 (98)
94 PRK09481 sspA stringent starva 95.9 0.033 7.1E-07 50.1 7.6 71 183-262 7-77 (211)
95 cd03044 GST_N_EF1Bgamma GST_N 95.9 0.026 5.6E-07 42.8 5.9 67 188-262 2-70 (75)
96 cd03043 GST_N_1 GST_N family, 95.7 0.043 9.3E-07 41.7 6.5 65 196-262 5-70 (73)
97 PF13409 GST_N_2: Glutathione 95.6 0.012 2.6E-07 44.6 3.2 63 201-265 2-68 (70)
98 PHA02278 thioredoxin-like prot 95.5 0.044 9.5E-07 45.2 6.4 62 185-254 16-85 (103)
99 TIGR00862 O-ClC intracellular 95.5 0.057 1.2E-06 51.0 7.9 76 187-265 3-80 (236)
100 cd02957 Phd_like Phosducin (Ph 95.5 0.065 1.4E-06 43.9 7.3 64 187-263 28-98 (113)
101 TIGR01068 thioredoxin thioredo 95.4 0.12 2.6E-06 39.7 8.3 57 187-255 18-82 (101)
102 PF03960 ArsC: ArsC family; I 95.4 0.037 7.9E-07 45.6 5.7 38 200-237 5-42 (110)
103 cd03047 GST_N_2 GST_N family, 95.4 0.055 1.2E-06 40.6 6.2 66 188-261 2-69 (73)
104 PRK09381 trxA thioredoxin; Pro 95.4 0.13 2.8E-06 41.2 8.7 61 185-257 23-91 (109)
105 cd02989 Phd_like_TxnDC9 Phosdu 95.4 0.057 1.2E-06 44.8 6.7 60 186-257 25-91 (113)
106 cd02954 DIM1 Dim1 family; Dim1 95.2 0.088 1.9E-06 44.8 7.5 58 186-255 17-82 (114)
107 cd03046 GST_N_GTT1_like GST_N 95.2 0.059 1.3E-06 40.2 5.8 68 188-264 2-71 (76)
108 TIGR03140 AhpF alkyl hydropero 95.2 0.041 8.8E-07 56.6 6.4 61 183-255 117-182 (515)
109 cd02956 ybbN ybbN protein fami 95.1 0.13 2.9E-06 40.0 7.8 57 186-254 15-79 (96)
110 cd03057 GST_N_Beta GST_N famil 95.1 0.068 1.5E-06 40.3 5.9 67 188-263 2-71 (77)
111 PRK15317 alkyl hydroperoxide r 95.1 0.049 1.1E-06 56.0 6.6 61 183-255 116-181 (517)
112 cd02985 TRX_CDSP32 TRX family, 94.9 0.17 3.6E-06 40.9 8.0 60 186-254 18-84 (103)
113 TIGR02187 GlrX_arch Glutaredox 94.7 0.12 2.7E-06 47.1 7.6 61 184-254 20-90 (215)
114 PF13098 Thioredoxin_2: Thiore 94.7 0.15 3.3E-06 40.7 7.2 68 184-259 6-104 (112)
115 PRK10996 thioredoxin 2; Provis 94.6 0.12 2.5E-06 44.3 6.8 57 186-254 55-119 (139)
116 cd02951 SoxW SoxW family; SoxW 94.4 0.14 3.1E-06 42.1 6.6 57 186-250 17-92 (125)
117 TIGR03143 AhpF_homolog putativ 94.4 0.095 2.1E-06 54.6 6.8 58 184-253 477-539 (555)
118 TIGR01126 pdi_dom protein disu 94.4 0.11 2.5E-06 40.1 5.7 55 183-249 13-75 (102)
119 KOG0910 Thioredoxin-like prote 94.3 0.048 1E-06 48.7 3.8 72 171-254 49-128 (150)
120 cd02984 TRX_PICOT TRX domain, 94.2 0.27 5.8E-06 38.1 7.5 56 187-254 18-81 (97)
121 cd02965 HyaE HyaE family; HyaE 94.0 0.25 5.3E-06 42.0 7.3 65 183-257 27-99 (111)
122 PRK15113 glutathione S-transfe 94.0 0.21 4.5E-06 45.0 7.4 72 186-263 5-78 (214)
123 cd02987 Phd_like_Phd Phosducin 93.9 0.21 4.6E-06 44.8 7.2 59 186-257 85-151 (175)
124 cd03004 PDI_a_ERdj5_C PDIa fam 93.8 0.31 6.7E-06 38.6 7.2 55 185-251 21-83 (104)
125 cd02963 TRX_DnaJ TRX domain, D 93.7 0.51 1.1E-05 38.6 8.6 59 185-255 26-93 (111)
126 PRK10877 protein disulfide iso 93.6 0.48 1E-05 44.4 9.3 35 182-222 106-143 (232)
127 cd02948 TRX_NDPK TRX domain, T 93.6 0.35 7.5E-06 38.8 7.2 56 185-253 19-83 (102)
128 cd03065 PDI_b_Calsequestrin_N 93.5 0.52 1.1E-05 40.2 8.5 62 183-255 26-101 (120)
129 KOG2813 Predicted molecular ch 93.5 0.06 1.3E-06 53.6 3.2 21 313-333 244-264 (406)
130 cd02961 PDI_a_family Protein D 93.3 0.31 6.7E-06 36.8 6.2 53 185-249 17-77 (101)
131 cd03077 GST_N_Alpha GST_N fami 93.1 0.5 1.1E-05 36.4 7.2 67 187-262 2-70 (79)
132 KOG0406 Glutathione S-transfer 93.1 0.34 7.3E-06 46.1 7.4 72 184-264 7-79 (231)
133 PRK10767 chaperone protein Dna 93.0 0.092 2E-06 52.3 3.7 49 284-332 142-202 (371)
134 cd03003 PDI_a_ERdj5_N PDIa fam 93.0 0.32 7E-06 38.4 6.2 55 186-252 21-83 (101)
135 PLN02473 glutathione S-transfe 92.9 0.31 6.7E-06 43.5 6.6 70 187-264 3-74 (214)
136 cd02996 PDI_a_ERp44 PDIa famil 92.9 0.32 7E-06 39.0 6.1 55 186-252 21-89 (108)
137 cd02994 PDI_a_TMX PDIa family, 92.9 0.38 8.3E-06 37.8 6.4 55 186-252 19-82 (101)
138 PF00684 DnaJ_CXXCXGXG: DnaJ c 92.8 0.11 2.5E-06 39.6 3.1 46 287-332 1-63 (66)
139 PRK14300 chaperone protein Dna 92.8 0.097 2.1E-06 52.3 3.5 49 284-332 145-205 (372)
140 TIGR01262 maiA maleylacetoacet 92.7 0.18 4E-06 44.6 4.9 62 201-264 8-72 (210)
141 PLN02817 glutathione dehydroge 92.5 0.28 6.1E-06 46.8 6.1 62 200-264 72-133 (265)
142 COG0484 DnaJ DnaJ-class molecu 92.5 0.095 2.1E-06 52.9 3.0 49 284-332 142-204 (371)
143 PLN02378 glutathione S-transfe 92.2 0.34 7.3E-06 43.9 5.9 62 199-263 18-79 (213)
144 cd02950 TxlA TRX-like protein 92.1 0.61 1.3E-05 40.2 7.2 59 186-254 23-90 (142)
145 PF13901 DUF4206: Domain of un 91.9 0.06 1.3E-06 49.7 0.7 87 243-332 102-196 (202)
146 cd03001 PDI_a_P5 PDIa family, 91.9 0.66 1.4E-05 36.1 6.6 52 186-249 21-78 (103)
147 cd02962 TMX2 TMX2 family; comp 91.9 0.75 1.6E-05 40.7 7.6 63 187-255 51-122 (152)
148 cd02998 PDI_a_ERp38 PDIa famil 91.6 0.53 1.1E-05 36.5 5.7 52 186-249 21-81 (105)
149 cd03020 DsbA_DsbC_DsbG DsbA fa 91.6 1.3 2.8E-05 39.7 8.9 36 182-223 76-113 (197)
150 PRK14285 chaperone protein Dna 91.6 0.19 4.2E-06 50.1 3.9 49 284-332 146-206 (365)
151 PRK14284 chaperone protein Dna 91.3 0.2 4.3E-06 50.5 3.7 49 284-332 158-218 (391)
152 cd03078 GST_N_Metaxin1_like GS 91.2 1.4 3.1E-05 34.0 7.6 60 196-265 11-70 (73)
153 cd03002 PDI_a_MPD1_like PDI fa 91.1 0.62 1.3E-05 36.8 5.8 54 186-249 21-80 (109)
154 cd02999 PDI_a_ERp44_like PDIa 91.0 0.91 2E-05 36.6 6.7 54 184-249 19-78 (100)
155 PF06953 ArsD: Arsenical resis 90.9 0.89 1.9E-05 39.3 6.8 54 206-262 31-93 (123)
156 cd02952 TRP14_like Human TRX-r 90.6 0.54 1.2E-05 40.1 5.2 55 187-249 25-96 (119)
157 cd02959 ERp19 Endoplasmic reti 90.4 0.47 1E-05 39.7 4.6 59 187-255 23-91 (117)
158 PRK14288 chaperone protein Dna 90.4 0.28 6E-06 49.1 3.8 46 286-331 142-198 (369)
159 cd03005 PDI_a_ERp46 PDIa famil 90.2 0.82 1.8E-05 35.5 5.6 56 186-253 19-85 (102)
160 cd02988 Phd_like_VIAF Phosduci 90.2 0.73 1.6E-05 42.2 6.0 57 186-257 104-168 (192)
161 PRK14298 chaperone protein Dna 90.1 0.26 5.6E-06 49.5 3.3 49 284-332 141-205 (377)
162 PRK14286 chaperone protein Dna 90.0 0.27 5.9E-06 49.2 3.4 49 284-332 150-210 (372)
163 PRK14294 chaperone protein Dna 89.9 0.31 6.7E-06 48.6 3.7 49 284-332 144-204 (366)
164 PRK14301 chaperone protein Dna 89.9 0.28 6E-06 49.1 3.3 48 285-332 145-204 (373)
165 PRK14291 chaperone protein Dna 89.9 0.31 6.8E-06 48.9 3.7 49 284-332 156-215 (382)
166 PRK14295 chaperone protein Dna 89.8 0.27 5.8E-06 49.6 3.1 49 284-332 166-226 (389)
167 COG3118 Thioredoxin domain-con 89.7 0.61 1.3E-05 46.0 5.4 63 184-258 43-114 (304)
168 PRK14287 chaperone protein Dna 89.7 0.3 6.5E-06 48.9 3.4 49 284-332 138-202 (371)
169 PRK14289 chaperone protein Dna 89.6 0.28 6.1E-06 49.2 3.1 49 284-332 154-218 (386)
170 PF10865 DUF2703: Domain of un 89.5 1.8 3.8E-05 37.4 7.5 80 198-312 12-105 (120)
171 PRK14282 chaperone protein Dna 89.4 0.31 6.8E-06 48.6 3.3 49 284-332 152-216 (369)
172 cd03079 GST_N_Metaxin2 GST_N f 89.2 1.4 3.1E-05 34.6 6.2 54 202-264 18-71 (74)
173 TIGR02349 DnaJ_bact chaperone 88.9 0.37 8.1E-06 47.6 3.4 49 284-332 143-207 (354)
174 cd02972 DsbA_family DsbA famil 88.9 1.1 2.3E-05 33.6 5.2 32 187-224 1-38 (98)
175 PRK14293 chaperone protein Dna 88.9 0.35 7.5E-06 48.4 3.2 49 284-332 143-207 (374)
176 PRK14280 chaperone protein Dna 88.9 0.38 8.3E-06 48.2 3.4 49 284-332 143-207 (376)
177 PRK14290 chaperone protein Dna 88.7 0.39 8.6E-06 47.8 3.4 49 284-332 149-212 (365)
178 PRK14279 chaperone protein Dna 88.7 0.34 7.5E-06 48.8 3.0 48 284-331 173-232 (392)
179 cd02955 SSP411 TRX domain, SSP 88.4 1.5 3.2E-05 37.5 6.3 64 186-257 17-97 (124)
180 PTZ00443 Thioredoxin domain-co 88.4 2.1 4.5E-05 40.3 7.8 57 186-254 55-119 (224)
181 PRK14297 chaperone protein Dna 88.3 0.4 8.7E-06 48.0 3.2 49 284-332 148-212 (380)
182 cd03006 PDI_a_EFP1_N PDIa fami 88.1 1.7 3.7E-05 36.4 6.4 57 185-252 31-95 (113)
183 PRK14292 chaperone protein Dna 88.1 0.45 9.7E-06 47.5 3.4 49 284-332 139-204 (371)
184 PF11009 DUF2847: Protein of u 88.1 2.5 5.4E-05 35.7 7.3 67 183-255 18-92 (105)
185 PF14595 Thioredoxin_9: Thiore 87.6 0.33 7.1E-06 41.8 1.8 65 183-256 41-113 (129)
186 PF00684 DnaJ_CXXCXGXG: DnaJ c 87.6 0.71 1.5E-05 35.1 3.5 38 283-324 14-66 (66)
187 PRK14296 chaperone protein Dna 87.5 0.48 1E-05 47.5 3.2 49 284-332 149-213 (372)
188 KOG0907 Thioredoxin [Posttrans 87.5 2.1 4.5E-05 35.8 6.5 56 185-252 22-85 (106)
189 PRK14276 chaperone protein Dna 87.5 0.51 1.1E-05 47.4 3.3 49 284-332 146-210 (380)
190 PRK14278 chaperone protein Dna 87.4 0.55 1.2E-05 47.1 3.5 49 284-332 139-203 (378)
191 KOG1422 Intracellular Cl- chan 87.1 1.9 4E-05 40.9 6.6 61 200-265 20-82 (221)
192 cd02986 DLP Dim1 family, Dim1- 87.1 1.7 3.7E-05 37.2 5.8 56 187-254 18-81 (114)
193 PRK13972 GSH-dependent disulfi 87.1 2.1 4.6E-05 38.3 6.9 54 187-249 2-57 (215)
194 PRK10357 putative glutathione 87.1 1.2 2.6E-05 39.3 5.2 64 188-260 2-66 (202)
195 cd03000 PDI_a_TMX3 PDIa family 86.9 2 4.3E-05 34.2 5.9 51 186-248 18-77 (104)
196 PLN00410 U5 snRNP protein, DIM 86.8 2.4 5.2E-05 37.5 6.8 55 186-252 26-89 (142)
197 PLN02395 glutathione S-transfe 86.7 1.9 4.2E-05 38.3 6.3 69 187-264 3-73 (215)
198 cd02997 PDI_a_PDIR PDIa family 86.6 1.5 3.2E-05 34.1 4.9 60 185-254 19-88 (104)
199 PRK14296 chaperone protein Dna 86.6 0.59 1.3E-05 46.8 3.3 38 284-326 166-218 (372)
200 PRK14277 chaperone protein Dna 86.5 0.59 1.3E-05 47.0 3.2 48 285-332 156-219 (386)
201 cd03009 TryX_like_TryX_NRX Try 86.4 3.8 8.3E-05 33.7 7.5 55 187-249 22-105 (131)
202 COG0625 Gst Glutathione S-tran 86.3 1.5 3.2E-05 39.2 5.3 67 188-262 2-70 (211)
203 PRK14285 chaperone protein Dna 86.2 0.66 1.4E-05 46.4 3.3 39 284-327 163-212 (365)
204 PRK14283 chaperone protein Dna 86.1 0.64 1.4E-05 46.6 3.2 49 284-332 146-210 (378)
205 PRK14282 chaperone protein Dna 86.1 0.71 1.5E-05 46.1 3.5 39 284-327 169-222 (369)
206 cd02993 PDI_a_APS_reductase PD 86.0 1.7 3.7E-05 35.2 5.1 53 185-248 23-83 (109)
207 PRK14279 chaperone protein Dna 85.6 0.68 1.5E-05 46.8 3.1 40 283-327 189-239 (392)
208 PRK14276 chaperone protein Dna 85.1 0.69 1.5E-05 46.4 2.9 38 284-326 163-215 (380)
209 PRK10767 chaperone protein Dna 85.1 0.78 1.7E-05 45.7 3.3 38 284-326 159-207 (371)
210 PRK14280 chaperone protein Dna 85.0 0.79 1.7E-05 45.9 3.3 38 284-326 160-212 (376)
211 cd02964 TryX_like_family Trypa 85.0 4.9 0.00011 33.4 7.5 60 187-254 21-113 (132)
212 PRK14301 chaperone protein Dna 84.9 0.71 1.5E-05 46.3 2.9 38 284-326 161-209 (373)
213 cd02995 PDI_a_PDI_a'_C PDIa fa 84.8 2.2 4.9E-05 33.0 5.1 52 185-249 20-79 (104)
214 COG3019 Predicted metal-bindin 84.6 3.4 7.3E-05 37.0 6.6 74 184-268 25-104 (149)
215 cd03075 GST_N_Mu GST_N family, 84.6 4.3 9.3E-05 31.6 6.6 60 202-262 10-76 (82)
216 PRK14281 chaperone protein Dna 84.5 0.83 1.8E-05 46.2 3.2 48 285-332 164-226 (397)
217 PRK13728 conjugal transfer pro 84.4 2.7 5.9E-05 38.6 6.2 56 187-249 73-142 (181)
218 PRK14297 chaperone protein Dna 84.3 0.93 2E-05 45.5 3.4 38 284-326 165-217 (380)
219 PTZ00037 DnaJ_C chaperone prot 84.2 0.89 1.9E-05 46.5 3.3 49 284-332 150-215 (421)
220 PRK14284 chaperone protein Dna 84.2 0.87 1.9E-05 45.9 3.1 39 283-326 174-223 (391)
221 PRK14300 chaperone protein Dna 84.1 0.78 1.7E-05 45.9 2.7 38 284-326 162-210 (372)
222 PRK14288 chaperone protein Dna 84.0 0.92 2E-05 45.4 3.2 38 284-326 156-204 (369)
223 PRK14277 chaperone protein Dna 84.0 0.86 1.9E-05 45.8 3.0 38 284-326 172-224 (386)
224 PRK14286 chaperone protein Dna 83.7 0.88 1.9E-05 45.6 2.9 39 284-327 167-216 (372)
225 PRK14298 chaperone protein Dna 83.6 1.1 2.3E-05 45.2 3.4 38 284-326 158-210 (377)
226 PRK14278 chaperone protein Dna 83.6 0.89 1.9E-05 45.6 2.9 38 284-326 156-208 (378)
227 COG0178 UvrA Excinuclease ATPa 83.5 1.1 2.3E-05 49.8 3.6 54 252-306 696-764 (935)
228 PRK14294 chaperone protein Dna 83.1 1 2.2E-05 45.0 3.0 38 284-326 161-209 (366)
229 PF13728 TraF: F plasmid trans 82.9 3.7 8E-05 38.2 6.5 58 184-249 121-189 (215)
230 TIGR02740 TraF-like TraF-like 82.9 2.7 5.9E-05 40.4 5.8 58 184-249 167-235 (271)
231 KOG0712 Molecular chaperone (D 82.6 1 2.2E-05 45.2 2.8 49 284-332 127-193 (337)
232 PTZ00037 DnaJ_C chaperone prot 82.5 1.2 2.5E-05 45.8 3.3 41 284-327 166-221 (421)
233 PRK14281 chaperone protein Dna 82.4 1.1 2.5E-05 45.1 3.2 39 284-327 179-232 (397)
234 PTZ00057 glutathione s-transfe 82.2 9.6 0.00021 34.1 8.7 70 186-262 4-77 (205)
235 cd02992 PDI_a_QSOX PDIa family 82.2 2.7 5.9E-05 34.7 4.8 55 185-249 21-84 (114)
236 PRK11752 putative S-transferas 82.1 4.4 9.5E-05 38.3 6.9 74 181-263 39-124 (264)
237 PRK14289 chaperone protein Dna 82.1 1.2 2.6E-05 44.7 3.3 39 283-326 170-223 (386)
238 TIGR02642 phage_xxxx uncharact 82.1 1 2.2E-05 41.6 2.5 27 284-310 99-130 (186)
239 PRK14290 chaperone protein Dna 81.9 1.2 2.7E-05 44.3 3.2 38 284-326 165-217 (365)
240 PRK14295 chaperone protein Dna 81.8 1.1 2.5E-05 45.1 2.9 38 284-326 183-231 (389)
241 KOG4244 Failed axon connection 81.0 1.6 3.4E-05 42.7 3.4 51 201-261 61-111 (281)
242 TIGR00595 priA primosomal prot 80.9 1.4 3.1E-05 45.8 3.4 47 284-333 213-261 (505)
243 TIGR02349 DnaJ_bact chaperone 80.9 1.4 3E-05 43.6 3.1 39 284-327 160-213 (354)
244 cd02982 PDI_b'_family Protein 80.7 4.4 9.5E-05 31.6 5.4 52 186-249 15-74 (103)
245 PRK14873 primosome assembly pr 78.3 2.1 4.5E-05 46.4 3.7 48 283-333 382-430 (665)
246 PTZ00062 glutaredoxin; Provisi 78.1 6.4 0.00014 36.6 6.4 52 185-256 18-77 (204)
247 PRK14287 chaperone protein Dna 77.9 1.6 3.4E-05 43.8 2.4 38 284-326 155-207 (371)
248 PF07315 DUF1462: Protein of u 77.5 11 0.00023 31.5 6.7 64 188-257 1-81 (93)
249 PRK10542 glutathionine S-trans 77.5 5 0.00011 35.2 5.3 59 203-263 10-72 (201)
250 PF02798 GST_N: Glutathione S- 77.5 7.5 0.00016 29.6 5.6 58 203-262 11-72 (76)
251 PRK03147 thiol-disulfide oxido 77.2 17 0.00037 31.0 8.4 61 186-254 64-152 (173)
252 cd03008 TryX_like_RdCVF Trypar 77.1 19 0.00042 31.7 8.8 36 187-228 28-78 (146)
253 PRK14292 chaperone protein Dna 76.8 2.1 4.6E-05 42.7 3.0 38 284-326 157-209 (371)
254 PRK14293 chaperone protein Dna 76.8 2.2 4.7E-05 42.7 3.1 38 284-326 160-212 (374)
255 PRK14283 chaperone protein Dna 76.5 2.6 5.6E-05 42.3 3.5 38 284-326 163-215 (378)
256 cd03010 TlpA_like_DsbE TlpA-li 75.8 15 0.00033 29.8 7.4 36 186-227 28-67 (127)
257 COG2999 GrxB Glutaredoxin 2 [P 75.6 2.4 5.2E-05 39.5 2.8 61 200-264 8-69 (215)
258 PRK14291 chaperone protein Dna 75.6 2.8 6E-05 42.2 3.5 37 284-326 173-220 (382)
259 PRK04023 DNA polymerase II lar 75.4 8.6 0.00019 43.8 7.4 44 283-332 625-670 (1121)
260 COG0484 DnaJ DnaJ-class molecu 74.8 3.1 6.8E-05 42.3 3.6 39 283-326 158-209 (371)
261 PRK00293 dipZ thiol:disulfide 73.4 10 0.00022 40.2 7.2 55 187-249 478-540 (571)
262 PRK05580 primosome assembly pr 73.0 3.2 6.9E-05 44.9 3.4 48 283-333 380-429 (679)
263 PF13899 Thioredoxin_7: Thiore 72.6 11 0.00023 29.0 5.4 50 187-249 21-79 (82)
264 cd03023 DsbA_Com1_like DsbA fa 72.1 3.4 7.4E-05 34.0 2.7 56 206-263 87-149 (154)
265 PF13719 zinc_ribbon_5: zinc-r 71.8 3 6.4E-05 28.6 1.9 27 296-322 3-33 (37)
266 PRK15412 thiol:disulfide inter 71.7 19 0.00041 32.0 7.6 43 186-234 71-117 (185)
267 COG3634 AhpF Alkyl hydroperoxi 71.6 6.1 0.00013 40.7 4.8 63 183-257 116-183 (520)
268 COG1198 PriA Primosomal protei 71.1 4.4 9.4E-05 44.6 3.9 47 284-333 435-483 (730)
269 PF15616 TerY-C: TerY-C metal 70.9 4 8.6E-05 35.9 2.9 39 284-326 77-117 (131)
270 COG5494 Predicted thioredoxin/ 70.8 17 0.00036 34.9 7.1 68 185-264 11-84 (265)
271 TIGR00424 APS_reduc 5'-adenyly 70.5 11 0.00023 39.4 6.4 56 186-251 374-438 (463)
272 TIGR02642 phage_xxxx uncharact 69.4 3.4 7.4E-05 38.2 2.3 30 295-327 99-128 (186)
273 COG4837 Uncharacterized protei 68.0 14 0.0003 31.2 5.3 69 183-256 3-87 (106)
274 PTZ00102 disulphide isomerase; 67.7 14 0.00031 36.9 6.5 56 185-252 51-117 (477)
275 PLN03165 chaperone protein dna 67.7 4.1 9E-05 34.8 2.3 22 285-306 76-97 (111)
276 TIGR00385 dsbE periplasmic pro 67.2 26 0.00056 30.7 7.4 35 186-226 66-103 (173)
277 PF04216 FdhE: Protein involve 67.2 3.1 6.8E-05 40.0 1.6 62 258-324 138-221 (290)
278 cd03022 DsbA_HCCA_Iso DsbA fam 67.1 6.2 0.00013 34.2 3.4 57 205-263 124-187 (192)
279 TIGR00630 uvra excinuclease AB 65.7 2.8 6.1E-05 47.1 1.2 25 283-307 735-771 (924)
280 TIGR01130 ER_PDI_fam protein d 65.7 17 0.00036 35.8 6.4 56 186-253 21-87 (462)
281 PF09297 zf-NADH-PPase: NADH p 65.6 4.4 9.5E-05 26.7 1.6 24 298-322 6-29 (32)
282 PRK03564 formate dehydrogenase 64.9 6.6 0.00014 39.0 3.4 37 283-324 186-236 (309)
283 PLN02309 5'-adenylylsulfate re 64.0 13 0.00028 38.8 5.5 56 183-249 365-428 (457)
284 TIGR02738 TrbB type-F conjugat 62.5 30 0.00066 30.5 6.8 36 184-225 51-90 (153)
285 PF13462 Thioredoxin_4: Thiore 62.5 13 0.00028 31.2 4.3 22 241-262 134-155 (162)
286 PF10568 Tom37: Outer mitochon 61.4 27 0.00058 27.2 5.6 54 200-263 13-70 (72)
287 COG1107 Archaea-specific RecJ- 60.7 6 0.00013 42.7 2.4 42 284-325 53-106 (715)
288 KOG4420 Uncharacterized conser 60.3 6.4 0.00014 38.8 2.3 72 187-266 27-100 (325)
289 PF11331 DUF3133: Protein of u 59.9 4.2 9.1E-05 29.7 0.8 33 291-323 2-40 (46)
290 TIGR02739 TraF type-F conjugat 59.9 16 0.00034 35.3 4.9 58 184-249 151-219 (256)
291 cd02970 PRX_like2 Peroxiredoxi 59.7 46 0.00099 27.3 7.1 54 185-248 25-86 (149)
292 PRK00635 excinuclease ABC subu 59.7 7.1 0.00015 46.9 3.0 54 253-307 1574-1642(1809)
293 COG2143 Thioredoxin-related pr 59.4 21 0.00045 32.9 5.3 99 142-252 5-125 (182)
294 KOG1695 Glutathione S-transfer 59.3 25 0.00055 32.9 6.1 60 201-263 12-71 (206)
295 PRK11657 dsbG disulfide isomer 58.3 15 0.00033 34.8 4.5 36 182-223 116-155 (251)
296 COG3340 PepE Peptidase E [Amin 58.1 70 0.0015 30.6 8.8 83 185-278 32-117 (224)
297 PF13905 Thioredoxin_8: Thiore 58.1 33 0.00072 26.3 5.7 43 187-235 5-56 (95)
298 PF08271 TF_Zn_Ribbon: TFIIB z 57.4 9.8 0.00021 26.5 2.3 24 297-320 2-25 (43)
299 TIGR01562 FdhE formate dehydro 56.9 11 0.00023 37.5 3.3 36 283-323 183-233 (305)
300 smart00834 CxxC_CXXC_SSSS Puta 56.2 8 0.00017 26.0 1.6 25 298-322 8-34 (41)
301 TIGR01130 ER_PDI_fam protein d 56.1 29 0.00063 34.1 6.2 52 184-249 365-425 (462)
302 PF01323 DSBA: DSBA-like thior 55.5 5.1 0.00011 34.7 0.7 57 205-263 124-188 (193)
303 cd03011 TlpA_like_ScsD_MtbDsbE 55.1 8.6 0.00019 30.9 2.0 23 185-213 22-44 (123)
304 cd03023 DsbA_Com1_like DsbA fa 54.9 17 0.00037 29.8 3.8 37 182-224 4-45 (154)
305 PF13462 Thioredoxin_4: Thiore 54.8 21 0.00045 29.9 4.3 42 181-228 10-59 (162)
306 PRK14714 DNA polymerase II lar 54.7 10 0.00022 44.2 3.0 44 283-332 666-716 (1337)
307 PRK00564 hypA hydrogenase nick 54.5 11 0.00025 31.9 2.7 24 284-307 71-100 (117)
308 PF13717 zinc_ribbon_4: zinc-r 54.0 9.7 0.00021 26.0 1.8 27 296-322 3-33 (36)
309 cd03019 DsbA_DsbA DsbA family, 53.3 11 0.00025 32.1 2.6 52 205-258 100-158 (178)
310 KOG2767 Translation initiation 53.0 22 0.00048 36.2 4.8 58 250-327 71-131 (400)
311 TIGR00311 aIF-2beta translatio 51.2 24 0.00051 31.0 4.2 46 266-326 83-130 (133)
312 cd02967 mauD Methylamine utili 51.2 70 0.0015 25.2 6.7 23 185-213 23-45 (114)
313 KOG0867 Glutathione S-transfer 51.1 44 0.00096 30.9 6.2 68 186-261 2-71 (226)
314 cd02966 TlpA_like_family TlpA- 49.7 94 0.002 23.3 7.0 35 186-226 22-63 (116)
315 KOG0868 Glutathione S-transfer 49.4 30 0.00066 32.5 4.8 74 185-266 4-80 (217)
316 PTZ00102 disulphide isomerase; 48.5 31 0.00068 34.5 5.2 54 184-249 376-437 (477)
317 cd03031 GRX_GRX_like Glutaredo 48.3 12 0.00027 33.0 2.0 30 295-332 99-140 (147)
318 PRK10954 periplasmic protein d 47.5 22 0.00048 32.2 3.6 53 205-259 124-183 (207)
319 cd03007 PDI_a_ERp29_N PDIa fam 47.4 81 0.0018 26.9 6.8 61 184-252 19-91 (116)
320 PRK12495 hypothetical protein; 47.3 25 0.00055 33.6 4.0 13 283-295 41-53 (226)
321 PRK13703 conjugal pilus assemb 47.2 37 0.00079 32.7 5.2 58 184-249 144-212 (248)
322 PRK11509 hydrogenase-1 operon 46.4 85 0.0018 27.5 6.9 78 168-259 23-109 (132)
323 PF04134 DUF393: Protein of un 46.2 67 0.0015 25.9 5.9 66 200-266 6-76 (114)
324 KOG1829 Uncharacterized conser 46.0 12 0.00026 40.2 1.9 130 188-322 384-539 (580)
325 PF03575 Peptidase_S51: Peptid 45.8 48 0.001 28.6 5.3 23 204-226 2-24 (154)
326 TIGR02661 MauD methylamine deh 44.6 62 0.0014 28.9 6.0 60 187-254 78-160 (189)
327 PF08792 A2L_zn_ribbon: A2L zi 44.5 12 0.00027 25.3 1.1 23 298-321 6-28 (33)
328 PF06764 DUF1223: Protein of u 44.2 50 0.0011 30.8 5.4 67 187-259 2-87 (202)
329 PF12760 Zn_Tnp_IS1595: Transp 43.9 23 0.0005 25.0 2.5 24 298-321 21-44 (46)
330 PF04783 DUF630: Protein of un 43.9 9.9 0.00021 29.3 0.6 8 1-8 1-8 (60)
331 PLN02189 cellulose synthase 43.8 12 0.00027 42.6 1.6 39 283-321 33-83 (1040)
332 PF08534 Redoxin: Redoxin; In 43.7 83 0.0018 26.1 6.3 45 185-235 30-82 (146)
333 PRK03988 translation initiatio 43.7 22 0.00048 31.4 2.8 33 294-326 101-135 (138)
334 cd03146 GAT1_Peptidase_E Type 42.9 84 0.0018 28.7 6.7 79 185-276 31-110 (212)
335 cd02958 UAS UAS family; UAS is 42.7 35 0.00076 27.6 3.8 55 186-249 19-83 (114)
336 smart00653 eIF2B_5 domain pres 42.3 19 0.0004 30.6 2.1 28 294-321 79-108 (110)
337 TIGR02098 MJ0042_CXXC MJ0042 f 41.7 20 0.00044 24.0 1.9 27 296-322 3-33 (38)
338 PF00578 AhpC-TSA: AhpC/TSA fa 40.9 83 0.0018 24.9 5.7 45 185-235 27-79 (124)
339 PF14205 Cys_rich_KTR: Cystein 40.8 26 0.00057 26.6 2.4 34 293-326 2-40 (55)
340 COG1107 Archaea-specific RecJ- 40.3 19 0.0004 39.1 2.2 13 296-308 54-66 (715)
341 PLN02436 cellulose synthase A 39.9 16 0.00034 41.9 1.7 39 283-321 35-85 (1094)
342 cd03017 PRX_BCP Peroxiredoxin 39.8 1.1E+02 0.0024 24.8 6.4 35 201-235 36-77 (140)
343 PRK14018 trifunctional thiored 39.4 96 0.0021 33.0 7.2 22 186-213 59-80 (521)
344 cd03019 DsbA_DsbA DsbA family, 39.1 51 0.0011 28.0 4.4 37 182-224 14-56 (178)
345 PRK03681 hypA hydrogenase nick 38.9 29 0.00064 29.3 2.8 21 284-304 70-96 (114)
346 smart00778 Prim_Zn_Ribbon Zinc 38.9 23 0.0005 24.7 1.8 29 294-322 2-33 (37)
347 PLN02638 cellulose synthase A 38.6 15 0.00033 42.0 1.3 39 283-321 16-66 (1079)
348 PF01873 eIF-5_eIF-2B: Domain 38.5 18 0.0004 31.3 1.5 44 264-322 77-122 (125)
349 PRK00349 uvrA excinuclease ABC 38.5 16 0.00034 41.5 1.3 25 283-307 737-773 (943)
350 KOG4022 Dihydropteridine reduc 38.3 1.7E+02 0.0037 27.5 7.8 79 183-270 2-100 (236)
351 smart00594 UAS UAS domain. 38.1 1.3E+02 0.0027 25.0 6.5 53 187-249 30-92 (122)
352 PF02114 Phosducin: Phosducin; 37.9 48 0.001 32.1 4.4 74 200-280 157-241 (265)
353 PF14354 Lar_restr_allev: Rest 36.9 23 0.0005 25.9 1.7 27 295-322 3-37 (61)
354 COG1365 Predicted ATPase (PP-l 36.5 61 0.0013 31.3 4.7 33 203-235 72-104 (255)
355 COG3058 FdhE Uncharacterized p 36.4 8.5 0.00018 38.0 -0.9 10 283-292 184-193 (308)
356 COG0526 TrxA Thiol-disulfide i 36.0 82 0.0018 22.9 4.6 39 191-235 40-85 (127)
357 PLN02412 probable glutathione 35.9 1.1E+02 0.0025 26.7 6.1 53 187-248 33-100 (167)
358 PF07092 DUF1356: Protein of u 35.7 22 0.00047 34.3 1.6 28 283-310 26-53 (238)
359 TIGR00595 priA primosomal prot 35.4 25 0.00055 36.8 2.2 36 283-324 221-263 (505)
360 PF11287 DUF3088: Protein of u 35.0 74 0.0016 27.4 4.6 51 198-251 21-76 (112)
361 PLN02400 cellulose synthase 34.7 24 0.00052 40.5 2.1 39 283-321 35-85 (1085)
362 PRK12336 translation initiatio 34.3 36 0.00079 31.5 2.9 45 266-325 84-130 (201)
363 KOG4218 Nuclear hormone recept 34.3 17 0.00036 37.2 0.7 34 284-317 15-54 (475)
364 PF03691 UPF0167: Uncharacteri 32.9 45 0.00098 30.7 3.2 92 183-277 31-137 (176)
365 smart00659 RPOLCX RNA polymera 32.6 29 0.00063 24.8 1.5 27 297-325 4-30 (44)
366 PF07295 DUF1451: Protein of u 32.2 44 0.00096 29.7 2.9 35 292-327 109-143 (146)
367 PRK00398 rpoP DNA-directed RNA 32.1 34 0.00073 24.1 1.8 9 314-322 21-29 (46)
368 PRK05282 (alpha)-aspartyl dipe 32.0 1.6E+02 0.0034 28.0 6.8 41 185-225 31-71 (233)
369 PRK00762 hypA hydrogenase nick 31.9 39 0.00084 29.0 2.4 6 285-291 71-76 (124)
370 PRK09437 bcp thioredoxin-depen 31.9 1.9E+02 0.0041 24.3 6.7 35 201-235 43-84 (154)
371 cd03024 DsbA_FrnE DsbA family, 31.4 1.2E+02 0.0025 26.5 5.5 54 206-261 133-194 (201)
372 PRK12380 hydrogenase nickel in 31.3 41 0.00088 28.4 2.5 23 283-305 69-96 (113)
373 COG3011 Predicted thiol-disulf 31.3 1.3E+02 0.0028 26.7 5.7 68 185-262 9-81 (137)
374 TIGR02605 CxxC_CxxC_SSSS putat 31.3 32 0.00069 24.5 1.6 26 298-323 8-35 (52)
375 KOG2324 Prolyl-tRNA synthetase 31.2 34 0.00073 35.3 2.3 34 294-327 226-260 (457)
376 cd00340 GSH_Peroxidase Glutath 31.1 98 0.0021 26.3 4.8 51 187-247 26-91 (152)
377 cd03012 TlpA_like_DipZ_like Tl 31.0 1.6E+02 0.0035 23.9 6.0 21 186-212 26-46 (126)
378 PRK00635 excinuclease ABC subu 30.6 39 0.00085 41.0 3.0 54 253-307 687-752 (1809)
379 cd01480 vWA_collagen_alpha_1-V 30.5 2.3E+02 0.005 24.9 7.3 67 184-252 109-184 (186)
380 cd00079 HELICc Helicase superf 30.1 2.7E+02 0.0058 21.7 7.6 47 184-237 28-74 (131)
381 PRK07220 DNA topoisomerase I; 30.0 54 0.0012 36.1 3.7 48 284-332 589-664 (740)
382 PF09369 DUF1998: Domain of un 29.9 32 0.00069 26.9 1.5 38 242-279 33-70 (84)
383 PRK04023 DNA polymerase II lar 29.4 36 0.00078 39.1 2.3 17 206-222 506-522 (1121)
384 PHA00626 hypothetical protein 28.8 38 0.00083 26.0 1.7 17 287-303 3-19 (59)
385 TIGR00108 eRF peptide chain re 28.6 19 0.00041 36.8 0.0 55 250-306 290-357 (409)
386 PLN02399 phospholipid hydroper 28.4 1.3E+02 0.0029 28.5 5.7 33 185-223 101-140 (236)
387 PF08273 Prim_Zn_Ribbon: Zinc- 28.1 54 0.0012 23.2 2.2 28 294-321 2-33 (40)
388 PLN02915 cellulose synthase A 28.1 31 0.00067 39.6 1.5 40 282-321 13-64 (1044)
389 PTZ00056 glutathione peroxidas 28.0 1.8E+02 0.0039 26.4 6.3 32 186-223 42-80 (199)
390 cd03018 PRX_AhpE_like Peroxire 27.6 1.9E+02 0.0042 23.8 6.0 31 201-231 41-78 (149)
391 PF13408 Zn_ribbon_recom: Reco 27.4 80 0.0017 22.3 3.1 35 294-329 4-40 (58)
392 cd03145 GAT1_cyanophycinase Ty 27.3 3.5E+02 0.0076 24.8 8.1 49 184-235 29-83 (217)
393 KOG4684 Uncharacterized conser 27.2 24 0.00051 33.9 0.4 17 315-331 171-195 (275)
394 KOG0908 Thioredoxin-like prote 27.0 99 0.0021 30.5 4.5 76 184-278 22-107 (288)
395 PF09788 Tmemb_55A: Transmembr 26.8 33 0.00071 33.4 1.3 20 187-208 114-135 (256)
396 PRK00432 30S ribosomal protein 26.7 42 0.0009 24.6 1.5 24 296-321 21-44 (50)
397 PTZ00256 glutathione peroxidas 26.7 1.7E+02 0.0037 25.9 5.8 51 188-247 46-111 (183)
398 COG1096 Predicted RNA-binding 26.6 45 0.00097 31.1 2.0 29 291-322 145-173 (188)
399 PHA03075 glutaredoxin-like pro 26.3 71 0.0015 27.9 3.1 30 185-220 3-32 (123)
400 PF01155 HypA: Hydrogenase exp 26.3 35 0.00077 28.6 1.2 24 284-307 70-98 (113)
401 TIGR00100 hypA hydrogenase nic 26.2 57 0.0012 27.5 2.5 23 283-305 69-96 (115)
402 PF09413 DUF2007: Domain of un 25.9 75 0.0016 23.5 2.9 52 187-251 1-52 (67)
403 KOG2041 WD40 repeat protein [G 25.5 66 0.0014 36.1 3.3 51 283-333 1116-1182(1189)
404 PF14569 zf-UDP: Zinc-binding 25.4 24 0.00051 28.7 0.0 39 283-321 8-58 (80)
405 PRK14890 putative Zn-ribbon RN 25.4 38 0.00083 26.1 1.2 19 313-331 24-42 (59)
406 PF04566 RNA_pol_Rpb2_4: RNA p 25.2 72 0.0016 24.4 2.6 16 247-262 1-16 (63)
407 PF03833 PolC_DP2: DNA polymer 25.1 24 0.00052 39.7 0.0 44 283-332 654-699 (900)
408 KOG3027 Mitochondrial outer me 24.7 1.2E+02 0.0026 29.3 4.5 66 183-266 25-90 (257)
409 PF03604 DNA_RNApol_7kD: DNA d 24.6 52 0.0011 22.2 1.5 24 298-323 3-26 (32)
410 PRK11032 hypothetical protein; 24.5 66 0.0014 29.2 2.7 40 268-307 100-154 (160)
411 PF07295 DUF1451: Protein of u 24.2 64 0.0014 28.7 2.5 25 283-307 111-142 (146)
412 TIGR01626 ytfJ_HI0045 conserve 24.1 2.7E+02 0.0059 25.5 6.7 38 183-226 59-105 (184)
413 TIGR02540 gpx7 putative glutat 23.7 1.6E+02 0.0035 24.9 4.9 30 187-222 26-62 (153)
414 PRK03824 hypA hydrogenase nick 23.6 65 0.0014 28.0 2.4 12 313-324 106-117 (135)
415 PLN02790 transketolase 23.1 2.3E+02 0.0051 30.7 7.0 87 185-278 541-641 (654)
416 cd02971 PRX_family Peroxiredox 23.0 2.4E+02 0.0051 22.8 5.6 28 201-228 35-69 (140)
417 PRK02935 hypothetical protein; 22.8 48 0.001 28.4 1.4 25 296-323 71-95 (110)
418 PRK14873 primosome assembly pr 22.2 58 0.0012 35.6 2.2 37 283-326 391-434 (665)
419 TIGR03676 aRF1/eRF1 peptide ch 22.1 36 0.00077 34.9 0.6 55 250-306 286-353 (403)
420 PF14319 Zn_Tnp_IS91: Transpos 22.1 71 0.0015 26.9 2.3 17 281-297 39-55 (111)
421 PLN02234 1-deoxy-D-xylulose-5- 21.6 1.8E+02 0.0038 31.9 5.7 63 186-259 546-612 (641)
422 PF09788 Tmemb_55A: Transmembr 21.4 65 0.0014 31.4 2.1 35 291-325 61-96 (256)
423 COG4332 Uncharacterized protei 21.4 65 0.0014 30.2 2.0 37 283-323 16-58 (203)
424 PF08646 Rep_fac-A_C: Replicat 21.4 58 0.0013 27.9 1.7 30 292-323 15-46 (146)
425 PF01927 Mut7-C: Mut7-C RNAse 21.3 52 0.0011 28.7 1.3 18 205-222 10-27 (147)
426 TIGR03143 AhpF_homolog putativ 21.2 2E+02 0.0044 30.2 5.9 51 187-249 370-425 (555)
427 PRK05580 primosome assembly pr 21.1 59 0.0013 35.3 2.0 34 284-323 390-430 (679)
428 cd03015 PRX_Typ2cys Peroxiredo 21.0 3.3E+02 0.0071 23.6 6.4 34 186-225 31-73 (173)
429 COG5429 Uncharacterized secret 20.9 1.1E+02 0.0024 29.8 3.5 69 184-258 42-129 (261)
430 PF04236 Transp_Tc5_C: Tc5 tra 20.8 58 0.0013 25.2 1.4 20 313-332 26-47 (63)
431 PF15033 Kinocilin: Kinocilin 20.5 58 0.0013 28.0 1.4 15 74-88 103-117 (124)
No 1
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-50 Score=376.58 Aligned_cols=160 Identities=59% Similarity=1.117 Sum_probs=151.4
Q ss_pred CcCCCCCcCCCCCCCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCC---cceecE
Q 044679 170 DPLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGE---TVTVPR 246 (333)
Q Consensus 170 d~l~~~~~~~pp~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~---~~TvPq 246 (333)
..+..|.+.++||++.+||||+|++||||+|+.+|..|++||++++|.|+||||+||..|++||++++ |. ..++|+
T Consensus 116 ~~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~l-g~~~~~~~LPr 194 (281)
T KOG2824|consen 116 KLLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELL-GEDEKAVSLPR 194 (281)
T ss_pred cchhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHH-hcccccCccCe
Confidence 46778999999999999999999999999999999999999999999999999999999999999999 54 789999
Q ss_pred EEECCEEEecchhhHhHHHhCcHHHHHHhhhhhcccCCccccCCCCcceeeCCCCCCcceeee---cCCccccCCCcCcC
Q 044679 247 VFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVL---ATGDKQRCGVCNEN 323 (333)
Q Consensus 247 VFVdG~~IGG~Del~eL~EsGeL~~lLk~~~~~~g~~~~~C~~CgG~rfvpC~~C~GS~K~~~---~~~~~~rC~~CNEN 323 (333)
|||+|+||||+++|++|||.|+|.+||++++. . ....|++|||.||+||+.||||||++. .+++++||+.||||
T Consensus 195 VFV~GryIGgaeeV~~LnE~GkL~~lL~~~p~-~--~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNEN 271 (281)
T KOG2824|consen 195 VFVKGRYIGGAEEVVRLNEEGKLGKLLKGIPC-E--GGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNEN 271 (281)
T ss_pred EEEccEEeccHHHhhhhhhcchHHHHHhcCCC-C--CCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCC
Confidence 99999999999999999999999999999993 2 578999999999999999999999998 45689999999999
Q ss_pred CcccCCCCCC
Q 044679 324 GLVHCPACSS 333 (333)
Q Consensus 324 GL~rCp~C~~ 333 (333)
||||||+|+.
T Consensus 272 GLvrCp~Cs~ 281 (281)
T KOG2824|consen 272 GLVRCPVCSN 281 (281)
T ss_pred CceeCCccCC
Confidence 9999999974
No 2
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=100.00 E-value=1.1e-48 Score=341.87 Aligned_cols=140 Identities=59% Similarity=1.099 Sum_probs=133.0
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCC---cceecEEEECCEEEecchhhHh
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGE---TVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~---~~TvPqVFVdG~~IGG~Del~e 262 (333)
+|||||||+++||+||++|.+||+||++++|.|+++||++|+++++||++++ |. +.++|||||+|+||||++++++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~-g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL-GAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh-CCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 5999999999999999999999999999999999999999999999999998 52 5899999999999999999999
Q ss_pred HHHhCcHHHHHHhhhhhcccCCccccCCCCcceeeCCCCCCcceeeecC----CccccCCCcCcCCcccC
Q 044679 263 LNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLAT----GDKQRCGVCNENGLVHC 328 (333)
Q Consensus 263 L~EsGeL~~lLk~~~~~~g~~~~~C~~CgG~rfvpC~~C~GS~K~~~~~----~~~~rC~~CNENGL~rC 328 (333)
||++|+|.++|+.++... ....|++|||.|||||..||||||++.++ +.++||++|||||||||
T Consensus 80 L~e~G~L~~lL~~~~~~~--~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c 147 (147)
T cd03031 80 LNESGELRKLLKGIRARA--GGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC 147 (147)
T ss_pred HHHcCCHHHHHhhccccc--CCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence 999999999999997655 67789999999999999999999999887 47999999999999999
No 3
>PRK10824 glutaredoxin-4; Provisional
Probab=99.88 E-value=1.6e-22 Score=170.70 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=87.9
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
.+++||||+++. ..++.||||.+|+++|.++|+.|.++||..+.+++++|++++ | ++|||||||||+||||+|++.+
T Consensus 13 ~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~s-g-~~TVPQIFI~G~~IGG~ddl~~ 89 (115)
T PRK10824 13 AENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYA-N-WPTFPQLWVDGELVGGCDIVIE 89 (115)
T ss_pred hcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHh-C-CCCCCeEEECCEEEcChHHHHH
Confidence 568999999974 455679999999999999999999999999999999999999 7 9999999999999999999999
Q ss_pred HHHhCcHHHHHHhhhhhc
Q 044679 263 LNESGKLGRMLRSARVEM 280 (333)
Q Consensus 263 L~EsGeL~~lLk~~~~~~ 280 (333)
|+++|+|.++|+.++...
T Consensus 90 l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 90 MYQRGELQQLIKETAAKY 107 (115)
T ss_pred HHHCCCHHHHHHHHHhhh
Confidence 999999999999877643
No 4
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.88 E-value=1.2e-22 Score=165.11 Aligned_cols=88 Identities=18% Similarity=0.328 Sum_probs=84.1
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCC--CcceecEEEECCEEEecchhhHhHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGG--ETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G--~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
|+||+||++|+|++...|+++++||++++|.|+++||++|++.+++|++++++ +.+++|||||+|+||||+|++.+|+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~ 81 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK 81 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999831 3699999999999999999999999
Q ss_pred HhCcHHHHHH
Q 044679 265 ESGKLGRMLR 274 (333)
Q Consensus 265 EsGeL~~lLk 274 (333)
++|+|.++|+
T Consensus 82 e~g~L~~lLk 91 (92)
T cd03030 82 ENNTLEEFLK 91 (92)
T ss_pred hCCCHHHHhC
Confidence 9999999985
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.87 E-value=8.1e-22 Score=160.41 Aligned_cols=88 Identities=24% Similarity=0.351 Sum_probs=81.8
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
.+++||||+++. ..++.||||.+|+++|+.+||+|+++||..+++.+++|++++ | +.++|||||||++|||+|++.+
T Consensus 10 ~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~t-g-~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 10 KENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYS-N-WPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred ccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh-C-CCCCCEEEECCEEEeChHHHHH
Confidence 568999999865 445679999999999999999999999999999999999998 7 8999999999999999999999
Q ss_pred HHHhCcHHHHH
Q 044679 263 LNESGKLGRML 273 (333)
Q Consensus 263 L~EsGeL~~lL 273 (333)
|+++|+|.++|
T Consensus 87 l~~~g~L~~~l 97 (97)
T TIGR00365 87 MYQSGELQTLL 97 (97)
T ss_pred HHHCcChHHhC
Confidence 99999999876
No 6
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.87 E-value=9.5e-22 Score=160.56 Aligned_cols=88 Identities=28% Similarity=0.424 Sum_probs=80.4
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH---HHHHHHHHhCCCcceecEEEECCEEEecchh
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQ---FLNELKDLFGGETVTVPRVFIKGRYVGGVDE 259 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e---~reELkels~G~~~TvPqVFVdG~~IGG~De 259 (333)
.+++|+||++++ ||||.+++++|+++||+|+++||+.+++ ++++|.+++ | +.|+|||||+|++|||+++
T Consensus 6 ~~~~Vvvysk~~------Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~t-g-~~tvP~Vfi~g~~iGG~dd 77 (99)
T TIGR02189 6 SEKAVVIFSRSS------CCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLG-C-SPAVPAVFVGGKLVGGLEN 77 (99)
T ss_pred ccCCEEEEECCC------CHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhc-C-CCCcCeEEECCEEEcCHHH
Confidence 568899999997 9999999999999999999999998754 566788877 6 9999999999999999999
Q ss_pred hHhHHHhCcHHHHHHhhhh
Q 044679 260 LTELNESGKLGRMLRSARV 278 (333)
Q Consensus 260 l~eL~EsGeL~~lLk~~~~ 278 (333)
+.+|+++|+|+++|+.++.
T Consensus 78 l~~l~~~G~L~~~l~~~~~ 96 (99)
T TIGR02189 78 VMALHISGSLVPMLKQAGA 96 (99)
T ss_pred HHHHHHcCCHHHHHHHhCc
Confidence 9999999999999987654
No 7
>PHA03050 glutaredoxin; Provisional
Probab=99.86 E-value=2.3e-21 Score=161.30 Aligned_cols=90 Identities=22% Similarity=0.368 Sum_probs=83.9
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCC---cEEEEECCC---CHHHHHHHHHHhCCCcceecEEEECCEEEec
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRV---VTDERDVSL---HGQFLNELKDLFGGETVTVPRVFIKGRYVGG 256 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV---~yeErDVs~---d~e~reELkels~G~~~TvPqVFVdG~~IGG 256 (333)
..++|+||++++ ||||.+++++|++++| .|+++||+. +.+++++|.+++ | ..|||+|||+|++|||
T Consensus 11 ~~~~V~vys~~~------CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~t-G-~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 11 ANNKVTIFVKFT------CPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQIT-G-GRTVPRIFFGKTSIGG 82 (108)
T ss_pred ccCCEEEEECCC------ChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHc-C-CCCcCEEEECCEEEeC
Confidence 457899999997 9999999999999999 799999986 678999999998 7 8999999999999999
Q ss_pred chhhHhHHHhCcHHHHHHhhhhhc
Q 044679 257 VDELTELNESGKLGRMLRSARVEM 280 (333)
Q Consensus 257 ~Del~eL~EsGeL~~lLk~~~~~~ 280 (333)
++++++|+++|+|.++|+.++..+
T Consensus 83 ~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 83 YSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred hHHHHHHHHcCCHHHHHHHccccc
Confidence 999999999999999999987754
No 8
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.84 E-value=9e-21 Score=151.50 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=78.5
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
.+++||||+++. ...+.|++|.+++++|+++||+|+++||..+.+++++|.+++ | ..++|+|||||++|||++++++
T Consensus 6 ~~~~vvvf~k~~-~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~-g-~~tvP~vfi~g~~iGG~~~l~~ 82 (90)
T cd03028 6 KENPVVLFMKGT-PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYS-N-WPTFPQLYVNGELVGGCDIVKE 82 (90)
T ss_pred ccCCEEEEEcCC-CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHh-C-CCCCCEEEECCEEEeCHHHHHH
Confidence 568999999863 345569999999999999999999999999999999999998 7 8999999999999999999999
Q ss_pred HHHhCcHH
Q 044679 263 LNESGKLG 270 (333)
Q Consensus 263 L~EsGeL~ 270 (333)
||++|+|+
T Consensus 83 l~~~g~L~ 90 (90)
T cd03028 83 MHESGELQ 90 (90)
T ss_pred HHHcCCcC
Confidence 99999984
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.82 E-value=5.6e-20 Score=141.49 Aligned_cols=79 Identities=33% Similarity=0.519 Sum_probs=76.0
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELNES 266 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~Es 266 (333)
|+||++++ |++|.+++++|+++||+|+++||+++++.+++|.+++ | ..++|+|||+|++|||++++.+|+++
T Consensus 1 v~ly~~~~------Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~-g-~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPY------CPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRS-G-RRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCC------ChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHh-C-CCCcCEEEECCEEEcChHHHHHHHHc
Confidence 68999996 9999999999999999999999999999999999998 7 99999999999999999999999999
Q ss_pred CcHHHHH
Q 044679 267 GKLGRML 273 (333)
Q Consensus 267 GeL~~lL 273 (333)
|+|+++|
T Consensus 73 g~l~~~l 79 (79)
T TIGR02181 73 GKLDPLL 79 (79)
T ss_pred CChhhhC
Confidence 9999876
No 10
>PRK10638 glutaredoxin 3; Provisional
Probab=99.81 E-value=1.7e-19 Score=141.18 Aligned_cols=82 Identities=28% Similarity=0.483 Sum_probs=77.8
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
.+|+||++++ |++|.+++.+|+.+||+|+++||+.+.+.+++|.+++ | ..++|+||+||++|||++++.+++
T Consensus 2 ~~v~ly~~~~------Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~-g-~~~vP~i~~~g~~igG~~~~~~~~ 73 (83)
T PRK10638 2 ANVEIYTKAT------CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRS-G-RTTVPQIFIDAQHIGGCDDLYALD 73 (83)
T ss_pred CcEEEEECCC------ChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHh-C-CCCcCEEEECCEEEeCHHHHHHHH
Confidence 3699999997 9999999999999999999999999998999999998 7 899999999999999999999999
Q ss_pred HhCcHHHHHH
Q 044679 265 ESGKLGRMLR 274 (333)
Q Consensus 265 EsGeL~~lLk 274 (333)
++|+|..+|+
T Consensus 74 ~~g~l~~~~~ 83 (83)
T PRK10638 74 ARGGLDPLLK 83 (83)
T ss_pred HcCCHHHHhC
Confidence 9999999884
No 11
>PTZ00062 glutaredoxin; Provisional
Probab=99.79 E-value=6.3e-19 Score=161.77 Aligned_cols=90 Identities=19% Similarity=0.292 Sum_probs=83.2
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
..++||||+++. ...+.|+||++++++|+++||+|.++||..|.+++++|++++ | ++|+|||||+|++|||+|++++
T Consensus 111 ~~~~Vvvf~Kg~-~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~s-g-~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 111 RNHKILLFMKGS-KTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYS-N-WPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred hcCCEEEEEccC-CCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHh-C-CCCCCeEEECCEEEcChHHHHH
Confidence 678999999963 234569999999999999999999999999999999999998 7 9999999999999999999999
Q ss_pred HHHhCcHHHHHHh
Q 044679 263 LNESGKLGRMLRS 275 (333)
Q Consensus 263 L~EsGeL~~lLk~ 275 (333)
|+++|+|+++|..
T Consensus 188 l~~~G~L~~~l~~ 200 (204)
T PTZ00062 188 LYESNSLRKVIPD 200 (204)
T ss_pred HHHcCChhhhhhh
Confidence 9999999999864
No 12
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=8.5e-19 Score=144.88 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=86.8
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCC-CcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhH
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNR-VVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELT 261 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~g-V~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~ 261 (333)
.+++||||++.. ...+.|.|+.++..+|..+| ++|..+||-.|+++|+.|++++ + |+|+||+||+|++|||+|.+.
T Consensus 13 ~~n~VvLFMKGt-p~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s-~-WPT~PQLyi~GEfvGG~DIv~ 89 (105)
T COG0278 13 KENPVVLFMKGT-PEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYS-N-WPTFPQLYVNGEFVGGCDIVR 89 (105)
T ss_pred hcCceEEEecCC-CCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhc-C-CCCCceeeECCEEeccHHHHH
Confidence 678999999997 78899999999999999999 8999999999999999999998 7 999999999999999999999
Q ss_pred hHHHhCcHHHHHHhh
Q 044679 262 ELNESGKLGRMLRSA 276 (333)
Q Consensus 262 eL~EsGeL~~lLk~~ 276 (333)
+|+++|+|+++|+..
T Consensus 90 Em~q~GELq~~l~~~ 104 (105)
T COG0278 90 EMYQSGELQTLLKEA 104 (105)
T ss_pred HHHHcchHHHHHHhc
Confidence 999999999999764
No 13
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-18 Score=144.93 Aligned_cols=88 Identities=31% Similarity=0.540 Sum_probs=78.9
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHHhCCCcceecEEEECCEEEecchh
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH---GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDE 259 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d---~e~reELkels~G~~~TvPqVFVdG~~IGG~De 259 (333)
.+++||||++++ |+||.+++.+|...++.+..++++.+ .+++++|.+++ | .+|||+|||+|++|||+++
T Consensus 12 ~~~~VVifSKs~------C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~t-g-~~tvP~vFI~Gk~iGG~~d 83 (104)
T KOG1752|consen 12 SENPVVIFSKSS------CPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLT-G-QRTVPNVFIGGKFIGGASD 83 (104)
T ss_pred hcCCEEEEECCc------CchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhc-C-CCCCCEEEECCEEEcCHHH
Confidence 678999999997 99999999999999999666665543 48889999887 6 8999999999999999999
Q ss_pred hHhHHHhCcHHHHHHhhhh
Q 044679 260 LTELNESGKLGRMLRSARV 278 (333)
Q Consensus 260 l~eL~EsGeL~~lLk~~~~ 278 (333)
+++||.+|+|..+|+.++.
T Consensus 84 l~~lh~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 84 LMALHKSGELVPLLKEAGA 102 (104)
T ss_pred HHHHHHcCCHHHHHHHhhc
Confidence 9999999999999988764
No 14
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.77 E-value=2.5e-18 Score=130.13 Aligned_cols=74 Identities=31% Similarity=0.472 Sum_probs=69.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcc-eecEEEECCEEEecchhhHhHH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETV-TVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~-TvPqVFVdG~~IGG~Del~eL~ 264 (333)
+|+||++++ |++|.+++.+|++++|+|+++||+.+++.+++|.+++ | .. ++|+|||+|++|||++++++|+
T Consensus 1 ~i~ly~~~~------Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~-~-~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPN------CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRS-G-GRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCC------ChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh-C-CCCccCEEEECCEEEeChHHHHHHH
Confidence 589999997 9999999999999999999999999999999999988 6 55 9999999999999999999999
Q ss_pred HhC
Q 044679 265 ESG 267 (333)
Q Consensus 265 EsG 267 (333)
++|
T Consensus 73 ~~g 75 (75)
T cd03418 73 RKG 75 (75)
T ss_pred hCc
Confidence 987
No 15
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.76 E-value=2.7e-18 Score=130.95 Aligned_cols=73 Identities=29% Similarity=0.500 Sum_probs=69.0
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
++|+||++++ |++|++|+++|+.+||+|+++||..+++.+++|++++ | ..++|+|||||++|||++++.+|+
T Consensus 1 ~~v~ly~~~~------C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~-g-~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRLG------CEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERT-G-SSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecCC------ChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHh-C-CCCcCEEEECCEEEeCHHHHHhhc
Confidence 4799999997 9999999999999999999999999999999999998 7 789999999999999999999886
Q ss_pred H
Q 044679 265 E 265 (333)
Q Consensus 265 E 265 (333)
+
T Consensus 73 ~ 73 (73)
T cd03027 73 E 73 (73)
T ss_pred C
Confidence 4
No 16
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.72 E-value=2.1e-17 Score=126.52 Aligned_cols=79 Identities=29% Similarity=0.598 Sum_probs=71.7
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCc--EEEEECCCC---HHHHHHHHHHhCCCcceecEEEECCEEEecchhhH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVV--TDERDVSLH---GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELT 261 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~--yeErDVs~d---~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~ 261 (333)
|++|++++ |++|.+++.+|+++++. |+.++|+.+ .+++++|.+++ | ..++|+|||+|++|||++++.
T Consensus 1 V~~f~~~~------Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~-g-~~~vP~v~i~g~~igg~~~~~ 72 (84)
T TIGR02180 1 VVVFSKSY------CPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEIT-G-QRTVPNIFINGKFIGGCSDLL 72 (84)
T ss_pred CEEEECCC------ChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHh-C-CCCCCeEEECCEEEcCHHHHH
Confidence 68999998 99999999999999998 888887653 56778888888 6 899999999999999999999
Q ss_pred hHHHhCcHHHHH
Q 044679 262 ELNESGKLGRML 273 (333)
Q Consensus 262 eL~EsGeL~~lL 273 (333)
+|+++|+|.++|
T Consensus 73 ~~~~~g~l~~~~ 84 (84)
T TIGR02180 73 ALYKSGKLAELL 84 (84)
T ss_pred HHHHcCChhhhC
Confidence 999999999876
No 17
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.9e-17 Score=128.91 Aligned_cols=76 Identities=36% Similarity=0.534 Sum_probs=68.5
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHG--QFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~--e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
.|+||++++ ||||.+++++|+++|+.|+++|+++++ +.++.+++.. | .+|||||||||++|||++++.++
T Consensus 2 ~v~iyt~~~------CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~-g-~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPG------CPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGK-G-QRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCC------CchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhC-C-CCCcCEEEECCEEEeCcccHHHH
Confidence 599999996 999999999999999999999999887 6666666665 5 99999999999999999999999
Q ss_pred HHhCcH
Q 044679 264 NESGKL 269 (333)
Q Consensus 264 ~EsGeL 269 (333)
+..|.|
T Consensus 74 ~~~~~l 79 (80)
T COG0695 74 EAKGKL 79 (80)
T ss_pred HhhccC
Confidence 888876
No 18
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.70 E-value=5.7e-17 Score=124.11 Aligned_cols=79 Identities=34% Similarity=0.639 Sum_probs=71.4
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH---GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d---~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
+|++|++.+ ||+|.+++.+|+++++.|.+++++.+ .++++++++++ | ..++|+||++|++|||++++.+
T Consensus 1 ~v~~y~~~~------Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-g-~~~~P~v~~~g~~igg~~~~~~ 72 (82)
T cd03419 1 PVVVFSKSY------CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELT-G-QRTVPNVFIGGKFIGGCDDLMA 72 (82)
T ss_pred CEEEEEcCC------CHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHh-C-CCCCCeEEECCEEEcCHHHHHH
Confidence 589999997 99999999999999999988887654 56678899988 7 8999999999999999999999
Q ss_pred HHHhCcHHHH
Q 044679 263 LNESGKLGRM 272 (333)
Q Consensus 263 L~EsGeL~~l 272 (333)
|.++|+|+++
T Consensus 73 ~~~~g~l~~~ 82 (82)
T cd03419 73 LHKSGKLVKL 82 (82)
T ss_pred HHHcCCccCC
Confidence 9999999753
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.68 E-value=1.6e-16 Score=120.58 Aligned_cols=70 Identities=27% Similarity=0.474 Sum_probs=63.4
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
+|+||++++ |++|.+++++|+++||+|+++||+.+.. .++++.++ | ..++|+|||||++|||++++.++.
T Consensus 2 ~v~lys~~~------Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~-g-~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPG------CPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVT-G-AMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCC------CHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHh-C-CCCcCeEEECCEEEeCHHHHHHHh
Confidence 699999997 9999999999999999999999998874 46777777 6 899999999999999999988764
No 20
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.67 E-value=4.6e-16 Score=113.73 Aligned_cols=72 Identities=36% Similarity=0.668 Sum_probs=68.0
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHHH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELNE 265 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~E 265 (333)
+|+||++++ |++|++++.+|+++++.|.++|+..+.+.+++|.+++ | ..++|+||++|++|||++++++|++
T Consensus 1 ~v~ly~~~~------Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~-~-~~~~P~~~~~~~~igg~~~~~~~~~ 72 (72)
T cd02066 1 KVVVFSKST------CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELS-G-WPTVPQIFINGEFIGGYDDLKALHE 72 (72)
T ss_pred CEEEEECCC------CHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHh-C-CCCcCEEEECCEEEecHHHHHHhhC
Confidence 589999997 9999999999999999999999999999999999998 7 8999999999999999999998864
No 21
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.66 E-value=4.4e-16 Score=121.18 Aligned_cols=73 Identities=26% Similarity=0.448 Sum_probs=65.3
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
..++|+||++++ |++|.+++++|+.+||+|+++||+.+.+. +++++++ | ..++|+|||||++|||+++|.+
T Consensus 6 ~~~~V~ly~~~~------Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~-g-~~~vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 6 KPESVVVFTKPG------CPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVT-G-ATTVPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred CCCCEEEEECCC------CHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHH-C-CCCcCeEEECCEEEcCHHHHHH
Confidence 568899999997 99999999999999999999999887654 5677777 6 8999999999999999999876
Q ss_pred HH
Q 044679 263 LN 264 (333)
Q Consensus 263 L~ 264 (333)
+.
T Consensus 77 ~l 78 (79)
T TIGR02190 77 YL 78 (79)
T ss_pred Hh
Confidence 53
No 22
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.5e-16 Score=146.13 Aligned_cols=91 Identities=22% Similarity=0.354 Sum_probs=86.6
Q ss_pred CCCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhH
Q 044679 182 GGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELT 261 (333)
Q Consensus 182 ~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~ 261 (333)
...++|+||+++. ...+.|.+.+++..+|+.+||+|..+||..|+++|+.|++++ . |+|+|||||+|++|||+|.+.
T Consensus 136 v~a~~v~lFmKG~-p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fS-d-WPTfPQlyI~GEFiGGlDIl~ 212 (227)
T KOG0911|consen 136 VKAKPVMLFMKGT-PEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFS-D-WPTFPQLYVKGEFIGGLDILK 212 (227)
T ss_pred cccCeEEEEecCC-CCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhc-C-CCCccceeECCEeccCcHHHH
Confidence 3678899999997 688999999999999999999999999999999999999998 6 999999999999999999999
Q ss_pred hHHHhCcHHHHHHh
Q 044679 262 ELNESGKLGRMLRS 275 (333)
Q Consensus 262 eL~EsGeL~~lLk~ 275 (333)
+||++|+|...|+.
T Consensus 213 ~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 213 EMHEKGELVYTLKE 226 (227)
T ss_pred HHhhcccHHHHhhc
Confidence 99999999999875
No 23
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.64 E-value=8.2e-16 Score=121.91 Aligned_cols=74 Identities=24% Similarity=0.397 Sum_probs=65.1
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCC-cceecEEEECCEEEecchhh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGE-TVTVPRVFIKGRYVGGVDEL 260 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~-~~TvPqVFVdG~~IGG~Del 260 (333)
|+||++++ ||+|.+|+++|+++ ++.|+++||..+...+++|.+++ |. ..+||||||||++|||+++|
T Consensus 2 V~vys~~~------Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~-g~~~~tVP~ifi~g~~igG~~dl 74 (86)
T TIGR02183 2 VVIFGRPG------CPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTV-GKPVETVPQIFVDEKHVGGCTDF 74 (86)
T ss_pred EEEEeCCC------CccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHh-CCCCCCcCeEEECCEEecCHHHH
Confidence 89999997 99999999999998 46799999987776678898888 52 27999999999999999999
Q ss_pred HhHHHhC
Q 044679 261 TELNESG 267 (333)
Q Consensus 261 ~eL~EsG 267 (333)
.++++++
T Consensus 75 ~~~~~~~ 81 (86)
T TIGR02183 75 EQLVKEN 81 (86)
T ss_pred HHHHHhc
Confidence 9998764
No 24
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.64 E-value=1.1e-15 Score=119.83 Aligned_cols=74 Identities=22% Similarity=0.366 Sum_probs=66.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHHhCCC-cceecEEEECCEEEecchh
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV-----NRVVTDERDVSLHGQFLNELKDLFGGE-TVTVPRVFIKGRYVGGVDE 259 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~-----~gV~yeErDVs~d~e~reELkels~G~-~~TvPqVFVdG~~IGG~De 259 (333)
+|+||++++ |++|.+|+++|++ .+|.|+++||..+...+++|.+++ |. ..++|||||||++|||+++
T Consensus 2 ~v~iy~~~~------C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~-~~~~~~vP~ifi~g~~igg~~~ 74 (85)
T PRK11200 2 FVVIFGRPG------CPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTV-GKPVETVPQIFVDQKHIGGCTD 74 (85)
T ss_pred EEEEEeCCC------ChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHH-CCCCCcCCEEEECCEEEcCHHH
Confidence 699999997 9999999999999 899999999998877788899888 51 3899999999999999999
Q ss_pred hHhHHHh
Q 044679 260 LTELNES 266 (333)
Q Consensus 260 l~eL~Es 266 (333)
+.++++.
T Consensus 75 ~~~~~~~ 81 (85)
T PRK11200 75 FEAYVKE 81 (85)
T ss_pred HHHHHHH
Confidence 9988753
No 25
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.59 E-value=3.4e-15 Score=123.36 Aligned_cols=89 Identities=24% Similarity=0.447 Sum_probs=74.2
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhC-------CCcceecEEEECCEEEecch
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFG-------GETVTVPRVFIKGRYVGGVD 258 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~-------G~~~TvPqVFVdG~~IGG~D 258 (333)
.|.||+++..|.++.-..++++..||++++|+|+++||+++++.|+.|++..+ ++...+||||+||+|+|+|+
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence 48999999999999999999999999999999999999999999999999882 22556689999999999999
Q ss_pred hhHhHHHhCcHHHHHH
Q 044679 259 ELTELNESGKLGRMLR 274 (333)
Q Consensus 259 el~eL~EsGeL~~lLk 274 (333)
++.+++|+|+|.++|+
T Consensus 82 ~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 82 DFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHCTT-HHHHHT
T ss_pred HHHHHHhhCHHHHHhC
Confidence 9999999999999986
No 26
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.58 E-value=8.4e-15 Score=107.70 Aligned_cols=60 Identities=33% Similarity=0.600 Sum_probs=57.7
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYV 254 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~I 254 (333)
|+||++.+ |++|.+++++|+++|++|+++||+.+++.+++|++++ | ..++|+|||||++|
T Consensus 1 V~vy~~~~------C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~-g-~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPG------CPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELS-G-VRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTT------SHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHH-S-SSSSSEEEETTEEE
T ss_pred cEEEEcCC------CcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHc-C-CCccCEEEECCEEC
Confidence 79999986 9999999999999999999999999999999999998 7 99999999999987
No 27
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.52 E-value=3.7e-14 Score=141.70 Aligned_cols=86 Identities=20% Similarity=0.265 Sum_probs=73.6
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--------HhCCCcceecEEEECCEEEec
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKD--------LFGGETVTVPRVFIKGRYVGG 256 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELke--------ls~G~~~TvPqVFVdG~~IGG 256 (333)
.+|+||++++ ||+|.++|++|+++||+|+++||+.++...+.+.+ .+ | ..+||||||||++|||
T Consensus 2 ~~V~vys~~~------Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~-g-~~tvP~ifi~~~~igG 73 (410)
T PRK12759 2 VEVRIYTKTN------CPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEE-H-IRTVPQIFVGDVHIGG 73 (410)
T ss_pred CcEEEEeCCC------CHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccC-C-CCccCeEEECCEEEeC
Confidence 4699999997 99999999999999999999999988754442222 23 4 7899999999999999
Q ss_pred chhhHhHHHhCcHHHHHHhhhhhc
Q 044679 257 VDELTELNESGKLGRMLRSARVEM 280 (333)
Q Consensus 257 ~Del~eL~EsGeL~~lLk~~~~~~ 280 (333)
++++++ .+|+|.++|++.+...
T Consensus 74 f~~l~~--~~g~l~~~~~~~~~~~ 95 (410)
T PRK12759 74 YDNLMA--RAGEVIARVKGSSLTT 95 (410)
T ss_pred chHHHH--HhCCHHHHhcCCcccc
Confidence 999987 8999999999876554
No 28
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.41 E-value=7.3e-13 Score=101.02 Aligned_cols=64 Identities=16% Similarity=0.325 Sum_probs=58.1
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCE-EEecchh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGR-YVGGVDE 259 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~-~IGG~De 259 (333)
|+||++++ |++|.+++++|+++||+|+++||..+++.++++++ + | ..++|+||++|. +|||++.
T Consensus 1 v~ly~~~~------Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~-~-g-~~~vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNN------CVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKA-Q-G-FRQVPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c-C-CcccCEEEECCCcEEeccCH
Confidence 68999996 99999999999999999999999999999999876 4 6 789999999775 9999975
No 29
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.40 E-value=1.5e-12 Score=102.88 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=60.3
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchh
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDE 259 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~De 259 (333)
+|+||++++ |++|.++|.+|+++||+|+++||+.+++.+++++. . | ..++|+|+++|..|+||+.
T Consensus 2 ~v~lYt~~~------Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~-g-~~~vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRND------CVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-Q-G-FRQLPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCC------CHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-c-C-CCCcCEEEECCEEEecCCH
Confidence 699999997 99999999999999999999999999999888876 4 6 8899999999999999974
No 30
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.18 E-value=2e-10 Score=84.35 Aligned_cols=66 Identities=23% Similarity=0.396 Sum_probs=60.6
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchh
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDE 259 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~De 259 (333)
.|+||+.++ |++|++++.+|+..++.|.++|++.+.+.++++.+.+ | ..++|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~------C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~-~-~~~vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPW------CPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVL-G-QRGVPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCC------ChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHh-C-CCcccEEEECCEEEeeCCH
Confidence 389999998 9999999999999999999999999988888888888 6 8899999999999999754
No 31
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.12 E-value=5e-10 Score=82.25 Aligned_cols=66 Identities=27% Similarity=0.388 Sum_probs=60.8
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchh
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDE 259 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~De 259 (333)
+|++|++.+ |++|.+++.+|+..+++|..+|++.+...++++.++. + ..++|+|+++|+.|+|++.
T Consensus 1 ~v~l~~~~~------c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~-~-~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPD------CPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLN-G-YRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCC------ChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHc-C-CcccCEEEECCEEEecCCH
Confidence 489999997 9999999999999999999999999888888898886 5 7899999999999999875
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.90 E-value=1.6e-08 Score=75.91 Aligned_cols=66 Identities=14% Similarity=0.238 Sum_probs=56.6
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE-CCEEEecch
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI-KGRYVGGVD 258 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV-dG~~IGG~D 258 (333)
+|+||++++ |++|++++.+|+.++++|+.+|++.+....+++.++. .+..++|+|++ +|+.+....
T Consensus 1 ~v~ly~~~~------C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~-~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTW------CGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVN-NGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCC------ChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHh-CCCceeCEEEECCCeEecCCC
Confidence 489999998 9999999999999999999999999988888888875 23889999976 567776544
No 33
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.74 E-value=3e-08 Score=73.54 Aligned_cols=59 Identities=15% Similarity=0.274 Sum_probs=49.9
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEec
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGG 256 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG 256 (333)
+|+||++++ |++|.+++.+|+.+ ++.|..+|++.+.+ +.+.+ | ..++|+|+|+|++++-
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~-~-i~~vPti~i~~~~~~~ 65 (67)
T cd02973 2 NIEVFVSPT------CPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEY-G-VMSVPAIVINGKVEFV 65 (67)
T ss_pred EEEEEECCC------CCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHc-C-CcccCEEEECCEEEEe
Confidence 589999997 99999999999875 68999999987754 44556 6 7899999999998763
No 34
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=3.4e-08 Score=82.16 Aligned_cols=92 Identities=18% Similarity=0.255 Sum_probs=81.3
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhC-------CCcceecEEEECCEEEecch
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFG-------GETVTVPRVFIKGRYVGGVD 258 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~-------G~~~TvPqVFVdG~~IGG~D 258 (333)
.|.||+++..|...+--.-+.+..+|+.+.|.|+++||.+..+.++++....+ | ....||||.+++|.||||
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~G-nplPPqifn~d~Y~Gdye 81 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNG-NPLPPQIFNGDQYCGDYE 81 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCC-CCCCcccccCccccccHH
Confidence 58899999999888888889999999999999999999998888777655432 4 778999999999999999
Q ss_pred hhHhHHHhCcHHHHHHhhhh
Q 044679 259 ELTELNESGKLGRMLRSARV 278 (333)
Q Consensus 259 el~eL~EsGeL~~lLk~~~~ 278 (333)
.+.+..|++-|.++|.-++.
T Consensus 82 ~F~ea~E~ntl~eFL~lap~ 101 (108)
T KOG4023|consen 82 LFFEAVEQNTLQEFLGLAPP 101 (108)
T ss_pred HHHHHHHHHHHHHHHccCCC
Confidence 99999999999999987664
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.52 E-value=6.6e-07 Score=68.87 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=57.4
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE--CCEEEecchhhHhHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI--KGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV--dG~~IGG~Del~eL~ 264 (333)
++||+.+. |++|.+++.+|+.+||+|+.+||..+.....++.++. + ..++|++.. +|..+.+...+.+..
T Consensus 2 ~~Ly~~~~------sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFEG------SPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKG-G-KVQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCCC------CchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhC-C-CCcccEEEeCCCCeEEEcHHHHHHHH
Confidence 67999886 9999999999999999999999987766677888776 5 789999976 356777777665543
No 36
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.42 E-value=1.8e-06 Score=65.61 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=53.9
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEEC----CEEEecchhhH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIK----GRYVGGVDELT 261 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVd----G~~IGG~Del~ 261 (333)
+|.||+... |++|++++.+|+.+||+|++++++. ..+.+++ .. + ..++|+++++ |..|.....+.
T Consensus 1 ~i~Ly~~~~------~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~-~-~~~vP~l~~~~~~~~~~l~eS~~I~ 69 (77)
T cd03040 1 KITLYQYKT------CPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WS-S-YKKVPILRVESGGDGQQLVDSSVII 69 (77)
T ss_pred CEEEEEcCC------CHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-Hh-C-CCccCEEEECCCCCccEEEcHHHHH
Confidence 588999986 9999999999999999999999854 3344553 34 5 7899999987 67777777766
Q ss_pred hHH
Q 044679 262 ELN 264 (333)
Q Consensus 262 eL~ 264 (333)
+..
T Consensus 70 ~yL 72 (77)
T cd03040 70 STL 72 (77)
T ss_pred HHH
Confidence 543
No 37
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.37 E-value=8.2e-07 Score=63.27 Aligned_cols=68 Identities=19% Similarity=0.038 Sum_probs=55.1
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
.||+... |++|.+++.+|+.+||+|+.++++.+.....++++.. + ..++|.++++|..+++...+.+.
T Consensus 2 ~ly~~~~------~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~-~-~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPG------SPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALN-P-LGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCC------CccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcC-C-CCCCCEEEECCEEEEcHHHHHHH
Confidence 5788876 9999999999999999999998875543222566666 5 88999999999999988776553
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.32 E-value=2.7e-06 Score=63.82 Aligned_cols=68 Identities=12% Similarity=0.208 Sum_probs=53.8
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEEC-CEEEecchhhHhHHH
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIK-GRYVGGVDELTELNE 265 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVd-G~~IGG~Del~eL~E 265 (333)
.+|+..+ |++|.+++.+|..+|++|+.+.++..... . ..+.. + ..++|+++++ |..+++...+.+..+
T Consensus 2 ~Ly~~~~------~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~-~~~~~-~-~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEH------CPFCVKARMIAGLKNIPVEQIILQNDDEA-T-PIRMI-G-AKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCC------CcHhHHHHHHHHHcCCCeEEEECCCCchH-H-HHHhc-C-CCccCEEEeCCCeEeehHHHHHHHHh
Confidence 5788776 99999999999999999999998765322 2 23444 4 6789999997 889999988876543
No 39
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.17 E-value=7.3e-06 Score=64.92 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=58.1
Q ss_pred CCCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEEC-CEEEecchhh
Q 044679 182 GGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIK-GRYVGGVDEL 260 (333)
Q Consensus 182 ~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVd-G~~IGG~Del 260 (333)
-..+.++||+... |++|.+++.+|+.+|++|+.++++... ..+++.+.. + ..++|++.++ |..+.....+
T Consensus 14 ~~~~~~~Ly~~~~------sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~n-p-~~~vPvL~~~~g~~l~eS~aI 84 (89)
T cd03055 14 PVPGIIRLYSMRF------CPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKN-P-QGKVPALEIDEGKVVYESLII 84 (89)
T ss_pred CCCCcEEEEeCCC------CchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhC-C-CCCcCEEEECCCCEEECHHHH
Confidence 4567899999886 999999999999999999999887542 224566665 4 7889999998 7888777666
Q ss_pred HhH
Q 044679 261 TEL 263 (333)
Q Consensus 261 ~eL 263 (333)
.+.
T Consensus 85 ~~y 87 (89)
T cd03055 85 CEY 87 (89)
T ss_pred HHh
Confidence 554
No 40
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.06 E-value=4.8e-06 Score=69.23 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=41.0
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|+||+++. |++|++|+++|+++|++|+++|+..++..+++|.++.
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~ 45 (111)
T cd03036 1 LKFYEYPK------CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWL 45 (111)
T ss_pred CEEEECCC------CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHH
Confidence 68999997 9999999999999999999999998887788887766
No 41
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.05 E-value=1.7e-05 Score=59.10 Aligned_cols=69 Identities=19% Similarity=0.140 Sum_probs=53.0
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
++||+... |++|.+++.+|+.+|++|++++++... ...++++.. . ..++|.+..+|..+.....+.+..
T Consensus 1 ~~ly~~~~------~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSGPD------DVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELN-P-YGTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEECCC------ChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 46898885 999999999999999999998887442 234566665 4 679999988887776666655543
No 42
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.97 E-value=8.2e-06 Score=66.51 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=40.5
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|+||+++. |++|++++++|+++||+|+++||..++..+++|.+++
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~ 45 (105)
T cd02977 1 ITIYGNPN------CSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELL 45 (105)
T ss_pred CEEEECCC------CHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHH
Confidence 58999996 9999999999999999999999988777777787776
No 43
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.95 E-value=7.6e-05 Score=58.57 Aligned_cols=53 Identities=23% Similarity=0.428 Sum_probs=44.1
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECC
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKG 251 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG 251 (333)
+|++|++.+ |.-|..++.+|+.. ++.++.+||+.|++ |.+++ | ..+|+++++|
T Consensus 1 ~l~l~~k~~------C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y-~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPG------CHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKY-G--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SS------SHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHS-C--TSTSEEEETT
T ss_pred CEEEEcCCC------CChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHh-c--CCCCEEEEcC
Confidence 589999996 99999999999964 47799999998876 66677 4 6899999999
No 44
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.92 E-value=6.8e-05 Score=56.81 Aligned_cols=55 Identities=20% Similarity=0.322 Sum_probs=43.8
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh----CC--CcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV----NR--VVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGR 252 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~----~g--V~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~ 252 (333)
.|+||++++ |++|..++.+|+. ++ +.+..+|+..+.+. .+.+ | ..++|+++++|+
T Consensus 2 ~v~~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~----~~~~-~-v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPT------CPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK----AMEY-G-IMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCC------CcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH----HHHc-C-CccCCEEEECCE
Confidence 488999998 9999999999874 33 67888898877643 3345 6 888999999997
No 45
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=97.92 E-value=3.4e-05 Score=58.10 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=51.7
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEEC-CEEEecchhhHh
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIK-GRYVGGVDELTE 262 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVd-G~~IGG~Del~e 262 (333)
+||+..+ |++|.+++.+|+.+|++|+.++++.... ..++.++. . ..++|.+..+ |..|.....+.+
T Consensus 2 ~ly~~~~------~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~n-p-~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRR------CPYAMRARMALLLAGITVELREVELKNK-PAEMLAAS-P-KGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCC------CcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHC-C-CCCCCEEEECCCcEEecHHHHHH
Confidence 6898887 9999999999999999999988875421 25666665 4 7899999986 877766555443
No 46
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.90 E-value=2.5e-05 Score=67.12 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=40.4
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|+||+++. |++|++|+++|+++||.|+++|+..++..+++|.++.
T Consensus 2 i~iY~~~~------C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l 46 (131)
T PRK01655 2 VTLFTSPS------CTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL 46 (131)
T ss_pred EEEEeCCC------ChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence 78999997 9999999999999999999999998887777776654
No 47
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=97.89 E-value=2.7e-05 Score=57.66 Aligned_cols=67 Identities=18% Similarity=0.138 Sum_probs=50.6
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEE-CCEEEecchhhHh
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFI-KGRYVGGVDELTE 262 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFV-dG~~IGG~Del~e 262 (333)
.||+... |++|.+++.+|..+|++|+.+.++.. .....++.+.. . ..++|.+.+ +|..+.....+.+
T Consensus 2 ~Ly~~~~------s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 2 KLYDSPT------APNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKN-P-AGTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred EEEeCCC------CcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhC-C-CCCCCEEEeCCCCEEecHHHHHH
Confidence 6888886 99999999999999999988887642 23345677765 4 789999997 5566665555443
No 48
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=97.85 E-value=3.9e-05 Score=58.56 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=56.1
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHHH
Q 044679 189 IYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELNE 265 (333)
Q Consensus 189 IYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~E 265 (333)
+|+... |++|++++.+|+.+||+|+.++++.... +.++.++. + ..++|.+..+|..|.+...+.+..+
T Consensus 1 Ly~~~~------Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~-p-~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPG------SPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLN-P-KGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETT------SHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHS-T-TSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCC------ChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhc-c-cccceEEEECCEEEeCHHHHHHHHH
Confidence 577775 9999999999999999999999875433 56777776 5 8899999999999998888766543
No 49
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=97.81 E-value=6e-05 Score=56.43 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=53.2
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSL--HGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~--d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
+.||+... |++|++++.+|+.+|++|+.++++. +.....++.+.. . ...+|.+..+|..|.....+.+.
T Consensus 1 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 1 IDLYYLPG------SPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLN-P-QHTVPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred CEEEeCCC------CCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhC-c-CCCCCEEEECCEEEEcHHHHHHH
Confidence 36888886 9999999999999999999988764 333456777765 4 67899998888776665555443
No 50
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=97.78 E-value=5.4e-05 Score=63.26 Aligned_cols=45 Identities=22% Similarity=0.397 Sum_probs=40.8
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|.||+.+. |++|++|+++|+++||.|+++|+..++..+++|.++.
T Consensus 1 i~iY~~~~------C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~ 45 (117)
T TIGR01617 1 IKVYGSPN------CTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDIL 45 (117)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHH
Confidence 57999996 9999999999999999999999999888888887765
No 51
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.73 E-value=0.00011 Score=54.38 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=52.5
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSL--HGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~--d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
++|+... |++|.+++.+|+.+|++|++++|+. +.....++.+.. . ..++|.+..+|..|.....+.+
T Consensus 2 ~Ly~~~~------~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGFPL------SGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALN-P-NGEVPVLELDGRVLAESNAILV 70 (73)
T ss_pred EEEeCCC------CccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhC-C-CCCCCEEEECCEEEEcHHHHHH
Confidence 6788875 9999999999999999999998874 233445666665 3 6789999999988776665544
No 52
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.72 E-value=7.8e-05 Score=62.20 Aligned_cols=45 Identities=20% Similarity=0.436 Sum_probs=40.4
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|.||+.+. |++|++|+++|+.+||.|+++|+..++.-+++|.++.
T Consensus 2 i~iY~~~~------C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~ 46 (115)
T cd03032 2 IKLYTSPS------CSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEIL 46 (115)
T ss_pred EEEEeCCC------CHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHH
Confidence 78999996 9999999999999999999999988877777777766
No 53
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.64 E-value=0.00013 Score=58.72 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=47.6
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEe
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVG 255 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IG 255 (333)
-.|.+|++++ |++|..++.+|+.. +|.|..+|++..++. .+.+ | ...+|.++|||+.++
T Consensus 14 v~i~~F~~~~------C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~----a~~~-~-V~~vPt~vidG~~~~ 77 (89)
T cd03026 14 INFETYVSLS------CHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDE----VEER-G-IMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEEECCC------CCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHH----HHHc-C-CccCCEEEECCEEEE
Confidence 4689999986 99999999988764 789999999877543 3345 6 889999999998664
No 54
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.60 E-value=0.0001 Score=63.44 Aligned_cols=45 Identities=27% Similarity=0.536 Sum_probs=38.4
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|+||+.+. |+.|++++++|+.+||.|+++|+..++-.+++|..++
T Consensus 2 i~iY~~~~------C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l 46 (131)
T PRK12559 2 VVLYTTAS------CASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL 46 (131)
T ss_pred EEEEeCCC------ChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence 78999996 9999999999999999999999987765555555543
No 55
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.59 E-value=0.0001 Score=63.54 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=37.2
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDL 236 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkel 236 (333)
|+||+.+. |+.|++|+++|+++||+|+++|+..++--+++|.++
T Consensus 2 i~iY~~~~------C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~ 45 (132)
T PRK13344 2 IKIYTISS------CTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAI 45 (132)
T ss_pred EEEEeCCC------CHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHH
Confidence 78999996 999999999999999999999998775545555444
No 56
>PHA02125 thioredoxin-like protein
Probab=97.58 E-value=0.00034 Score=53.76 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=40.7
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYV 254 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~I 254 (333)
|++|+++| |+.|+.++.+|++..+.|..+|.+.+. ++.+.+ + ...+|++. +|+.+
T Consensus 2 iv~f~a~w------C~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~-~-v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEW------CANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKH-H-IRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHc-C-CceeCeEE-CCEEE
Confidence 78999998 999999999998765555555554443 455556 5 88999976 67644
No 57
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=97.49 E-value=0.00013 Score=60.39 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=38.9
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|+||+.+. |..|++++++|+.+|+.|+++|+..++--.++|.+++
T Consensus 1 i~iy~~~~------C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l 45 (105)
T cd03035 1 ITLYGIKN------CDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWL 45 (105)
T ss_pred CEEEeCCC------CHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHH
Confidence 68999996 9999999999999999999999988765566666655
No 58
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.45 E-value=0.00041 Score=53.73 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=42.1
Q ss_pred cEEEEEcccCCCCCCChhHHHH----HHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRV----RSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYV 254 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~a----K~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~I 254 (333)
.|.+|+ +| |+.|+.+ +++++++++.++.++|+...+ +.+ + | ..++|.|+|||+.+
T Consensus 2 ~i~~~a-~~------C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~~-~-~-v~~vPti~i~G~~~ 60 (76)
T TIGR00412 2 KIQIYG-TG------CANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----ILE-A-G-VTATPGVAVDGELV 60 (76)
T ss_pred EEEEEC-CC------CcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HHH-c-C-CCcCCEEEECCEEE
Confidence 366776 76 9999999 668888999999999883222 333 4 5 89999999999755
No 59
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.43 E-value=0.00076 Score=50.70 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=49.1
Q ss_pred CCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHHH
Q 044679 196 GVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELNE 265 (333)
Q Consensus 196 giR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~E 265 (333)
++...|++|.+++.+|+.+||+|+.++++... .. . ...+|.+..+|+.+.+...+.+..+
T Consensus 11 ~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~-p-~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 11 GLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RS-P-TGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cC-C-CcccCEEEECCEEEcCHHHHHHHHh
Confidence 44557999999999999999999999987542 23 3 6789999999999999888766543
No 60
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.34 E-value=0.00028 Score=59.41 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=38.7
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|+||+.+. |..|++|+++|+++|+.|+++|+..++--+++|++++
T Consensus 2 i~iy~~p~------C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l 46 (113)
T cd03033 2 IIFYEKPG------CANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF 46 (113)
T ss_pred EEEEECCC------CHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence 78999996 9999999999999999999999987765556666555
No 61
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.29 E-value=0.00081 Score=51.95 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=34.3
Q ss_pred ChhHHHHHHH----HHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEE
Q 044679 201 YEDCNRVRSI----FEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRY 253 (333)
Q Consensus 201 Cp~C~~aK~l----L~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~ 253 (333)
|++|..+.++ +..+++.++.+|+... +++ ..+ | ..++|.++|||+.
T Consensus 10 C~~C~~~~~~~~~~~~~~~i~~ei~~~~~~----~~~-~~y-g-v~~vPalvIng~~ 59 (76)
T PF13192_consen 10 CPYCPELVQLLKEAAEELGIEVEIIDIEDF----EEI-EKY-G-VMSVPALVINGKV 59 (76)
T ss_dssp CTTHHHHHHHHHHHHHHTTEEEEEEETTTH----HHH-HHT-T--SSSSEEEETTEE
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEEccCH----HHH-HHc-C-CCCCCEEEECCEE
Confidence 9999977764 4567999999998432 334 445 6 9999999999984
No 62
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.23 E-value=0.0014 Score=49.41 Aligned_cols=69 Identities=14% Similarity=0.028 Sum_probs=49.8
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
+.+|+... |++|.+++.+|+.+|++|+.++++... ...+++++. ....++|.+..+|..+.....+.+.
T Consensus 1 ~~Ly~~~~------sp~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~~~-p~~~~vP~l~~~~~~l~eS~aI~~y 69 (74)
T cd03058 1 VKLLGAWA------SPFVLRVRIALALKGVPYEYVEEDLGN-KSELLLASN-PVHKKIPVLLHNGKPICESLIIVEY 69 (74)
T ss_pred CEEEECCC------CchHHHHHHHHHHcCCCCEEEEeCccc-CCHHHHHhC-CCCCCCCEEEECCEEeehHHHHHHH
Confidence 35787775 899999999999999999998876531 123455554 2136899998888777666665544
No 63
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=97.21 E-value=0.0015 Score=49.08 Aligned_cols=70 Identities=14% Similarity=-0.018 Sum_probs=53.7
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHG--QFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~--e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
+.+|+... |++|.+++.+|..+|++|+.+.++... ...+++.+.. . ...+|.+..+|..|.....+.+..
T Consensus 2 ~~Ly~~~~------s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-P-~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAM------STCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARN-P-FGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCC------ChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 57888875 899999999999999999998876532 2234566665 4 788999988888777766665554
No 64
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.11 E-value=0.00081 Score=55.74 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=40.8
Q ss_pred CcEEEE-EcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 185 DGVVIY-TTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 185 ~kVVIY-TtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
..|||| +++| |++|+.++.+|+.. .+.|..+|++.++ ++.+.+ + ..++|.+++
T Consensus 23 ~~vvv~f~a~w------C~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~-~-v~~vPt~~i 81 (113)
T cd02975 23 VDLVVFSSKEG------CQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKY-G-VERVPTTIF 81 (113)
T ss_pred eEEEEEeCCCC------CCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHc-C-CCcCCEEEE
Confidence 346666 5677 99999999999864 3678999998765 455556 6 899999987
No 65
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=97.01 E-value=0.0018 Score=49.60 Aligned_cols=69 Identities=19% Similarity=0.182 Sum_probs=52.6
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
+++|.... |++|++++.+|+.+|++|+.++++.. .....++.++. . ..++|.+..||..|.....+.+.
T Consensus 1 ~~ly~~~~------s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~in-P-~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQ------SFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLN-P-TGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCC------CccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhC-c-CCCCCEEEECCEEEEcHHHHHHH
Confidence 46788775 89999999999999999998887543 22234677775 4 78999998888877776665543
No 66
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=96.99 E-value=0.0019 Score=47.87 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=50.3
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
++|+... ++.|.+++.+|+.+||+|+.+.++.. .....++.+.. . ...+|.+..+|..+.....+.+.
T Consensus 2 ~L~~~~~------~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFR------SSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALN-P-QGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCC------CcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhC-C-CCCCCEEEECCEEEEcHHHHHHH
Confidence 5676664 78999999999999999999887653 22335666665 4 78999999888877666555443
No 67
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=96.98 E-value=0.0034 Score=47.69 Aligned_cols=69 Identities=9% Similarity=0.027 Sum_probs=53.0
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
+++|.... ++.|.+++.+|...|++|+.+.++.+ ....+++... . ..++|.+..+|..|.....+.+..
T Consensus 2 ~~Ly~~~~------~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~-p-~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYFPV------RGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKM-L-FGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEeCC------cchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 56777664 78999999999999999999988752 3344566554 3 678999999998887777665543
No 68
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=96.97 E-value=0.0049 Score=50.39 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=55.8
Q ss_pred cEEEEEcccCCC--CCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 186 GVVIYTTSLRGV--RRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 186 kVVIYTtSlrgi--R~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
.+-+|.+...+. ...|+||++++..|..+||.|+.++|++... -+.+.++. - ...+|.+..+|..|...+.+.++
T Consensus 5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~n-P-~g~vPvL~~~~~~i~eS~~I~eY 81 (91)
T cd03061 5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLA-P-GTQPPFLLYNGEVKTDNNKIEEF 81 (91)
T ss_pred cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhC-C-CCCCCEEEECCEEecCHHHHHHH
Confidence 456666654321 3569999999999999999999888865421 14466665 2 67899998889888887777665
Q ss_pred HH
Q 044679 264 NE 265 (333)
Q Consensus 264 ~E 265 (333)
.+
T Consensus 82 Ld 83 (91)
T cd03061 82 LE 83 (91)
T ss_pred HH
Confidence 43
No 69
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.91 E-value=0.0051 Score=45.60 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=43.5
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE--CCEEEe
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV-----NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI--KGRYVG 255 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~-----~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV--dG~~IG 255 (333)
+++|++++ |++|..+...|++ .++.|..+|++.+.++.+. . + ...+|++++ +|+.++
T Consensus 14 ll~~~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~-~-v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 14 VVDFWAPW------CGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----Y-G-VRSIPTFLFFKNGKEVD 77 (93)
T ss_pred EEEEECCC------ChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----c-C-cccccEEEEEECCEEEE
Confidence 66677665 9999999999988 7888999999886654433 3 5 678999766 777443
No 70
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.88 E-value=0.0033 Score=42.04 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=43.3
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECC
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFE-----VNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKG 251 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~-----~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG 251 (333)
+++|..++ |++|.+++..|. ..++.|..+|++........+.. . + ...+|.+++.+
T Consensus 1 l~~~~~~~------c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPW------CPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKR-Y-G-VGGVPTLVVFG 61 (69)
T ss_pred CEEEECCC------ChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHh-C-C-CccccEEEEEe
Confidence 46777776 999999999999 67899999999888765554323 3 3 78899988755
No 71
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=96.85 E-value=0.0039 Score=46.73 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=50.0
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
+||.... ++.|.+++.+|+.+|++|+.+.++.......++.+.. . ..++|.+..+|..|.....+.+.
T Consensus 2 ~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~-p-~~~vP~L~~~~~~l~es~aI~~y 69 (72)
T cd03039 2 KLTYFNI------RGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTL-P-FGQLPVLEIDGKKLTQSNAILRY 69 (72)
T ss_pred EEEEEcC------cchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCC-c-CCCCCEEEECCEEEEecHHHHHH
Confidence 5676664 7899999999999999999998865432223344443 3 78999999888887776665544
No 72
>PRK10387 glutaredoxin 2; Provisional
Probab=96.77 E-value=0.0048 Score=54.72 Aligned_cols=70 Identities=14% Similarity=0.239 Sum_probs=52.6
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEE-EECCEEEecchhhHhHHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRV-FIKGRYVGGVDELTELNE 265 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqV-FVdG~~IGG~Del~eL~E 265 (333)
+.+|+... |++|.+++.+|+.+||+|+.++++.+... .. .+.. + ..+||++ .-+|..|.....+.+..+
T Consensus 1 ~~Ly~~~~------sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~-p-~~~VPvL~~~~g~~l~eS~aI~~yL~ 70 (210)
T PRK10387 1 MKLYIYDH------CPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMI-G-QKQVPILQKDDGSYMPESLDIVHYID 70 (210)
T ss_pred CEEEeCCC------CchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhc-C-CcccceEEecCCeEecCHHHHHHHHH
Confidence 46888775 99999999999999999999998654322 22 2343 3 6799999 567888888877766654
Q ss_pred h
Q 044679 266 S 266 (333)
Q Consensus 266 s 266 (333)
+
T Consensus 71 ~ 71 (210)
T PRK10387 71 E 71 (210)
T ss_pred H
Confidence 3
No 73
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.77 E-value=0.011 Score=46.93 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=42.6
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE--CCEEEe
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV------NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI--KGRYVG 255 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~------~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV--dG~~IG 255 (333)
+++|+++| |+.|+.+..+|+. .++.|..+|++.++++ .... + ...+|.+++ +|+.++
T Consensus 17 lv~f~a~~------C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~-~-v~~vPt~~i~~~g~~v~ 81 (97)
T cd02949 17 LVLYTSPT------CGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAA-G-IMGTPTVQFFKDKELVK 81 (97)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHC-C-CeeccEEEEEECCeEEE
Confidence 56677776 9999999998876 4578899999887654 3444 5 788998754 777653
No 74
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.77 E-value=0.0036 Score=46.90 Aligned_cols=66 Identities=11% Similarity=-0.038 Sum_probs=48.2
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE-CCEEEecchhhHh
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEV--NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI-KGRYVGGVDELTE 262 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~--~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV-dG~~IGG~Del~e 262 (333)
.+|+... |++|.+++.+|+. +|++|+.+.++.. ....++.+.. . ..++|.+.. +|..+.....+.+
T Consensus 2 ~Ly~~~~------s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~-p-~~~vP~l~~~~g~~l~es~aI~~ 70 (73)
T cd03049 2 KLLYSPT------SPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVN-P-LGKIPALVLDDGEALFDSRVICE 70 (73)
T ss_pred EEecCCC------CcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhC-C-CCCCCEEEECCCCEEECHHHHHh
Confidence 5777775 8999999999999 8999999988642 1224455554 4 788999975 6777766555544
No 75
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=96.75 E-value=0.0042 Score=60.82 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=64.8
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
=++++|--. |||||.+||.+|+=+||.|..+.| ++-.|++++=-+ ...||.+.|+|+-+-...-+..+.
T Consensus 89 L~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk~Ss---ykKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 89 LDLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIKWSS---YKKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred ceEEEEeec------cCchHHHHHHHHhhcCCceEEEEe--cchhhhhccccc---cccccEEEeccceechhHHHHHHH
Confidence 469999877 599999999999999999998887 455677775433 889999999988766665555544
Q ss_pred ------HhCcHHHHHHhhhhh
Q 044679 265 ------ESGKLGRMLRSARVE 279 (333)
Q Consensus 265 ------EsGeL~~lLk~~~~~ 279 (333)
....|.++++-+++.
T Consensus 158 aTyLq~~~q~l~eiiq~yPa~ 178 (370)
T KOG3029|consen 158 ATYLQDKRQDLGEIIQMYPAT 178 (370)
T ss_pred HHHhccCCCCHHHHHHhcccc
Confidence 234677787777754
No 76
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=96.72 E-value=0.0045 Score=56.06 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=51.8
Q ss_pred EEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE-ECCEEEecchhhHhHHHh
Q 044679 189 IYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF-IKGRYVGGVDELTELNES 266 (333)
Q Consensus 189 IYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVF-VdG~~IGG~Del~eL~Es 266 (333)
+|+... ||+|.+++.+|..+|++|+.+++..+.. .. ..+.. + ..++|++. .||..|++...+.+..++
T Consensus 2 Ly~~~~------sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~n-p-~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 2 LYIYDH------CPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMI-G-AKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred eecCCC------CChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhc-C-CCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 677664 9999999999999999999998865432 12 23443 3 67899997 788899988888776543
No 77
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.0022 Score=54.63 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=38.8
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
.|+||..+. |.-|++|+++|+++||+|.++|+..++--+++|.+++
T Consensus 2 ~itiy~~p~------C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l 47 (117)
T COG1393 2 MITIYGNPN------CSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL 47 (117)
T ss_pred eEEEEeCCC------ChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence 489999996 9999999999999999999999987665556665554
No 78
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=96.63 E-value=0.0076 Score=46.14 Aligned_cols=68 Identities=13% Similarity=0.075 Sum_probs=50.1
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHHhCCCcceecEEEEC---CEEEecchhhH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSL--HGQFLNELKDLFGGETVTVPRVFIK---GRYVGGVDELT 261 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~--d~e~reELkels~G~~~TvPqVFVd---G~~IGG~Del~ 261 (333)
+.||... .++|.+++.+|+.+|++|+.+.++. +.....++.+.. . ..++|.+..+ |..|.....+.
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~-p-~~~vP~l~~~~~~g~~l~eS~aI~ 72 (81)
T cd03048 2 ITLYTHG-------TPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKIN-P-NGRIPAIVDHNGTPLTVFESGAIL 72 (81)
T ss_pred eEEEeCC-------CCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhC-c-CCCCCEEEeCCCCceEEEcHHHHH
Confidence 5788765 4899999999999999998877763 233445666665 3 7889999887 66666655554
Q ss_pred hH
Q 044679 262 EL 263 (333)
Q Consensus 262 eL 263 (333)
+.
T Consensus 73 ~y 74 (81)
T cd03048 73 LY 74 (81)
T ss_pred HH
Confidence 44
No 79
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=96.62 E-value=0.003 Score=52.90 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=37.8
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|+||+.+. |.-|++++++|+++|+.|+++|+..++--.++|.+++
T Consensus 1 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l 45 (114)
T TIGR00014 1 VTIYHNPR------CSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIF 45 (114)
T ss_pred CEEEECCC------CHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHH
Confidence 57999986 9999999999999999999999987765555555554
No 80
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=96.62 E-value=0.0049 Score=47.73 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=51.6
Q ss_pred EEEEccc-CCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEEC-CEEEecchhhHhH
Q 044679 188 VIYTTSL-RGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFIK-GRYVGGVDELTEL 263 (333)
Q Consensus 188 VIYTtSl-rgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFVd-G~~IGG~Del~eL 263 (333)
++|+... -+.+..+++|.+++.+|..+|++|+.+.++.. .....++ +.. . ...+|.+..+ |..|.+...+.+.
T Consensus 2 ~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~-p-~~~vP~L~~~~~~~l~eS~aI~~y 78 (84)
T cd03038 2 TLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSG-G-FYTVPVIVDGSGEVIGDSFAIAEY 78 (84)
T ss_pred eeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCC-C-CceeCeEEECCCCEEeCHHHHHHH
Confidence 4554422 23456799999999999999999998877643 2223344 333 3 7899999888 8888877776655
Q ss_pred H
Q 044679 264 N 264 (333)
Q Consensus 264 ~ 264 (333)
.
T Consensus 79 L 79 (84)
T cd03038 79 L 79 (84)
T ss_pred H
Confidence 4
No 81
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=96.62 E-value=0.003 Score=52.62 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=36.4
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|+||+.+. |.-|++|+++|+++|++|+++|+..++--.++|..+.
T Consensus 1 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l 45 (112)
T cd03034 1 ITIYHNPR------CSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL 45 (112)
T ss_pred CEEEECCC------CHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence 57999996 9999999999999999999999977654444444443
No 82
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=96.56 E-value=0.011 Score=45.08 Aligned_cols=68 Identities=12% Similarity=0.179 Sum_probs=50.5
Q ss_pred EEEEEccc-CCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 187 VVIYTTSL-RGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSl-rgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
++||.... ++...-+++|.+++.+|+..|++|+.+.++.- +.. . ...+|.+..+|+.|.+...+.+..
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~--------~~~-p-~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA--------KRS-P-KGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc--------cCC-C-CCCCCEEEECCEEEcCHHHHHHHH
Confidence 45666553 22334589999999999999999999887641 333 3 778999999999888887766543
No 83
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.54 E-value=0.0039 Score=53.60 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=35.4
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKD 235 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELke 235 (333)
.|+||..+. |.-|++++++|+.+||+|+++|+-.++--+++|..
T Consensus 2 ~i~iY~~p~------Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~ 45 (126)
T TIGR01616 2 TIIFYEKPG------CANNARQKAALKASGHDVEVQDILKEPWHADTLRP 45 (126)
T ss_pred eEEEEeCCC------CHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHH
Confidence 478999986 99999999999999999999998665433333333
No 84
>PRK10853 putative reductase; Provisional
Probab=96.49 E-value=0.0037 Score=53.03 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=37.9
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
|+||+.+. |.-|++|+++|+.+||.|+++|+-.++--.++|.+++
T Consensus 2 i~iy~~~~------C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l 46 (118)
T PRK10853 2 VTLYGIKN------CDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFI 46 (118)
T ss_pred EEEEcCCC------CHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHH
Confidence 78999996 9999999999999999999999977654455555554
No 85
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.48 E-value=0.01 Score=50.17 Aligned_cols=66 Identities=14% Similarity=0.216 Sum_probs=41.9
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHH----hCCCcEEEEECCCCH--H-----HHHHHHHHhCC---CcceecEE--E
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFE----VNRVVTDERDVSLHG--Q-----FLNELKDLFGG---ETVTVPRV--F 248 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~----~~gV~yeErDVs~d~--e-----~reELkels~G---~~~TvPqV--F 248 (333)
.-||.|+.+| ||+|+.+.-.|+ ..++.+..+|++.+. + -..++.+.. + +...+|.+ |
T Consensus 25 ~~iv~f~~~~------Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~-~i~~~i~~~PT~v~~ 97 (122)
T TIGR01295 25 TATFFIGRKT------CPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRF-GIPTSFMGTPTFVHI 97 (122)
T ss_pred cEEEEEECCC------ChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHc-CCcccCCCCCEEEEE
Confidence 3466677776 999999655554 457889999998653 1 123344443 2 14458987 4
Q ss_pred ECCEEEecc
Q 044679 249 IKGRYVGGV 257 (333)
Q Consensus 249 VdG~~IGG~ 257 (333)
-+|+.++..
T Consensus 98 k~Gk~v~~~ 106 (122)
T TIGR01295 98 TDGKQVSVR 106 (122)
T ss_pred eCCeEEEEE
Confidence 588766544
No 86
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=96.43 E-value=0.0036 Score=53.24 Aligned_cols=50 Identities=30% Similarity=0.687 Sum_probs=41.6
Q ss_pred CCccccCCCCcceeeCCCCCCcceeeecCC----ccccCCCcCcCCcccCCCCC
Q 044679 283 GRQACEGCGGARFVPCFDCGGSCKVVLATG----DKQRCGVCNENGLVHCPACS 332 (333)
Q Consensus 283 ~~~~C~~CgG~rfvpC~~C~GS~K~~~~~~----~~~rC~~CNENGL~rCp~C~ 332 (333)
....|..|.|.+...|..|+|+-.++...+ ...+|+.|+-.|.+.|+.|.
T Consensus 40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~~C~~C~ 93 (111)
T PLN03165 40 NTQPCFPCSGTGAQVCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSLTCTTCQ 93 (111)
T ss_pred cCCCCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEEEEECCCCCCcceeeCCCCC
Confidence 467899999999999999999976654322 35799999999999999995
No 87
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0085 Score=48.22 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=45.9
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH-HHHHHHHH---------hCCCcceecEEEE-CCEEEec
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQ-FLNELKDL---------FGGETVTVPRVFI-KGRYVGG 256 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e-~reELkel---------s~G~~~TvPqVFV-dG~~IGG 256 (333)
++|.+.+ ||+|..+.++|++.+|.|++++|...-. +++-|+-+ -+.+...+|.+.+ ||+.|=|
T Consensus 5 ~lfgsn~------Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 5 KLFGSNL------CPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred eeecccc------CcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 7888886 9999999999999999999999965432 22222111 0023788999876 4555544
Q ss_pred chhh
Q 044679 257 VDEL 260 (333)
Q Consensus 257 ~Del 260 (333)
+++
T Consensus 79 -~Dl 81 (85)
T COG4545 79 -DDL 81 (85)
T ss_pred -chh
Confidence 444
No 88
>PRK10026 arsenate reductase; Provisional
Probab=96.40 E-value=0.0052 Score=54.08 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=38.7
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
..|+||+.+. |.-|++++++|+++|++|+++|+-.++--.++|+.++
T Consensus 2 ~~i~iY~~p~------Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l 48 (141)
T PRK10026 2 SNITIYHNPA------CGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI 48 (141)
T ss_pred CEEEEEeCCC------CHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence 3589999996 9999999999999999999999977654455555544
No 89
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.37 E-value=0.011 Score=47.16 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=39.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHH------Hh---CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIF------EV---NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL------~~---~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
-+|.|+++| |++|+++...+ .. .++.+..+|++.+.....++...+ + ..++|.+++
T Consensus 14 vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~-~-i~~~Pti~~ 78 (104)
T cd02953 14 VFVDFTADW------CVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRF-G-VFGPPTYLF 78 (104)
T ss_pred EEEEEEcch------hHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHc-C-CCCCCEEEE
Confidence 366777776 99999887543 11 167788889887655456677777 6 889998754
No 90
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=96.27 E-value=0.013 Score=53.47 Aligned_cols=55 Identities=11% Similarity=0.291 Sum_probs=42.9
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECC
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKG 251 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG 251 (333)
-.|++|+++| |++|..++.+|+.. .|.+..+|++.++++ .+.+ | ..++|+++|++
T Consensus 135 v~I~~F~a~~------C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~----~~~~-~-V~~vPtl~i~~ 194 (215)
T TIGR02187 135 VRIEVFVTPT------CPYCPYAVLMAHKFALANDKILGEMIEANENPDL----AEKY-G-VMSVPKIVINK 194 (215)
T ss_pred cEEEEEECCC------CCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHH----HHHh-C-CccCCEEEEec
Confidence 4577799998 99999999999864 477788888877654 3445 6 88999998864
No 91
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=96.17 E-value=0.022 Score=43.06 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=49.4
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
++|.... ++.|++++.+|+..|++|+.+.++.. .....++.+.. . ...+|.+..+|..|-....+.+.
T Consensus 2 ~ly~~~~------s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~-p-~~~vP~L~~~~~~l~eS~aI~~Y 71 (76)
T cd03050 2 KLYYDLM------SQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKIN-P-FGKVPAIVDGDFTLAESVAILRY 71 (76)
T ss_pred EEeeCCC------ChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhC-c-CCCCCEEEECCEEEEcHHHHHHH
Confidence 5788775 78999999999999999998877642 22234566665 3 78899998888766555554443
No 92
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=95.95 E-value=0.028 Score=43.48 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=42.0
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEEe
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV----N--RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYVG 255 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~----~--gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~IG 255 (333)
-||.|++++ |+.|+.++..|.. + +|.|-.+|++.+.. |.+.+ + ...+|.++ -+|+.+.
T Consensus 20 vvv~f~~~~------C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~-~-v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 20 VVVYFYAPW------CPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKY-G-VKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEEESTT------SHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHT-T-CSSSSEEEEEETTEEEE
T ss_pred EEEEEeCCC------CCccccccceecccccccccccccchhhhhccch----hhhcc-C-CCCCCEEEEEECCcEEE
Confidence 356666665 9999999988764 2 58899999987754 44445 5 88899974 4776654
No 93
>PTZ00051 thioredoxin; Provisional
Probab=95.87 E-value=0.05 Score=42.46 Aligned_cols=58 Identities=17% Similarity=0.298 Sum_probs=41.0
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEEec
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV-----NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYVGG 256 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~-----~gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~IGG 256 (333)
++.|+.+| |+.|+++...|+. .++.|..+|++.... +.+.. + ...+|.++ -+|+.++.
T Consensus 22 li~f~~~~------C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~-~-v~~~Pt~~~~~~g~~~~~ 86 (98)
T PTZ00051 22 IVDFYAEW------CGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKE-N-ITSMPTFKVFKNGSVVDT 86 (98)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHC-C-CceeeEEEEEeCCeEEEE
Confidence 56677776 9999999888876 367888888876543 33444 5 77888764 47765543
No 94
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=95.85 E-value=0.033 Score=50.12 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=53.7
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
+...+.||+... |++|.+++-+|+.+|++|+.+.|+... ...++.++. - ..+||.+..+|..|--...+.+
T Consensus 7 ~~~~~~Ly~~~~------s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~~~~n-P-~g~VPvL~~~g~~l~ES~AIl~ 77 (211)
T PRK09481 7 KRSVMTLFSGPT------DIYSHQVRIVLAEKGVSVEIEQVEKDN-LPQDLIDLN-P-YQSVPTLVDRELTLYESRIIME 77 (211)
T ss_pred CCCeeEEeCCCC------ChhHHHHHHHHHHCCCCCEEEeCCccc-CCHHHHHhC-C-CCCCCEEEECCEEeeCHHHHHH
Confidence 334588999875 899999999999999999999887532 234566665 2 6789999988877665555544
No 95
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=95.85 E-value=0.026 Score=42.83 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=48.7
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHhCCCcceecEEEEC-CEEEecchhhHh
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHG-QFLNELKDLFGGETVTVPRVFIK-GRYVGGVDELTE 262 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~-e~reELkels~G~~~TvPqVFVd-G~~IGG~Del~e 262 (333)
++|+... |++|.+++-+|+.+|++|+.++|+... ....+++++. - ..++|.+..+ |..|.....+.+
T Consensus 2 ~Ly~~~~------~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~n-P-~~~vP~L~~~~g~~l~es~aI~~ 70 (75)
T cd03044 2 TLYTYPG------NPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKF-P-LGKVPAFEGADGFCLFESNAIAY 70 (75)
T ss_pred eEecCCC------CccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhC-C-CCCCCEEEcCCCCEEeeHHHHHH
Confidence 4676664 899999999999999999999887643 2234566665 3 7899999885 666655444443
No 96
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=95.67 E-value=0.043 Score=41.74 Aligned_cols=65 Identities=17% Similarity=0.052 Sum_probs=49.4
Q ss_pred CCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 196 GVRRTYEDCNRVRSIFEVNRVVTDERDVSLHG-QFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 196 giR~tCp~C~~aK~lL~~~gV~yeErDVs~d~-e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
+.+..+++|.+++-+|+.+|++|+.+.++... +...++++.. . ...+|.+..+|..|.....+.+
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~n-P-~g~vP~L~~~g~~l~eS~aI~~ 70 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFS-P-TGKVPVLVDGGIVVWDSLAICE 70 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhC-C-CCcCCEEEECCEEEEcHHHHHH
Confidence 45667999999999999999999998876532 2235666665 3 7899999999887776665544
No 97
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=95.62 E-value=0.012 Score=44.58 Aligned_cols=63 Identities=22% Similarity=0.127 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHhCCCcEEEEECCC---CHHHHHHHHHHhCCCcceecEEEE-CCEEEecchhhHhHHH
Q 044679 201 YEDCNRVRSIFEVNRVVTDERDVSL---HGQFLNELKDLFGGETVTVPRVFI-KGRYVGGVDELTELNE 265 (333)
Q Consensus 201 Cp~C~~aK~lL~~~gV~yeErDVs~---d~e~reELkels~G~~~TvPqVFV-dG~~IGG~Del~eL~E 265 (333)
||||.+++-+|+.+|++|+..-+.. +.....++.++. + ..+||.+.. +|+.|+....+.++.+
T Consensus 2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~-p-~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALN-P-RGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHS-T-T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccC-c-CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 8999999999999999988655521 222225667776 5 789999998 8999988887776654
No 98
>PHA02278 thioredoxin-like protein
Probab=95.49 E-value=0.044 Score=45.20 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=42.8
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYV 254 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~I 254 (333)
.-||-|+++| |+.|+.+..+|+.. .+.|..+||+.+..-..+|.+.. + ..++|++ |-+|+.+
T Consensus 16 ~vvV~F~A~W------CgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~-~-I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 16 DVIVMITQDN------CGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLF-D-IMSTPVLIGYKDGQLV 85 (103)
T ss_pred cEEEEEECCC------CHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHC-C-CccccEEEEEECCEEE
Confidence 3456667777 99999988877653 35688899987632233465666 5 8888986 4588765
No 99
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=95.48 E-value=0.057 Score=50.97 Aligned_cols=76 Identities=16% Similarity=0.168 Sum_probs=55.4
Q ss_pred EEEEEcccCCCC--CCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 187 VVIYTTSLRGVR--RTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSlrgiR--~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
|-+|.+.....+ ..|++|++++.+|..+||+|+.+.|+.... .+++.++. - ..+||++..+|..|.....+.++.
T Consensus 3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~in-P-~g~vPvL~~~g~~l~ES~aI~eYL 79 (236)
T TIGR00862 3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLA-P-GTHPPFLTYNTEVKTDVNKIEEFL 79 (236)
T ss_pred eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHC-c-CCCCCEEEECCEEeecHHHHHHHH
Confidence 556665532212 569999999999999999999888865422 25566665 3 678999988888888777776665
Q ss_pred H
Q 044679 265 E 265 (333)
Q Consensus 265 E 265 (333)
+
T Consensus 80 ~ 80 (236)
T TIGR00862 80 E 80 (236)
T ss_pred H
Confidence 4
No 100
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=95.47 E-value=0.065 Score=43.85 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=45.2
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEEecchh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYVGGVDE 259 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~IGG~De 259 (333)
||.|+++| |+.|+.+...|+.. ++.|..+|++.. +|.+.. + ...+|.+ |-+|+.++-...
T Consensus 28 vv~F~a~~------c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~-~-i~~~Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 28 VVHFYEPG------FPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYL-D-IKVLPTLLVYKNGELIDNIVG 94 (113)
T ss_pred EEEEeCCC------CCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhc-C-CCcCCEEEEEECCEEEEEEec
Confidence 55677776 99999998888752 577888887654 555555 5 7889986 568987765544
Q ss_pred hHhH
Q 044679 260 LTEL 263 (333)
Q Consensus 260 l~eL 263 (333)
...+
T Consensus 95 ~~~~ 98 (113)
T cd02957 95 FEEL 98 (113)
T ss_pred HHHh
Confidence 4333
No 101
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=95.42 E-value=0.12 Score=39.68 Aligned_cols=57 Identities=18% Similarity=0.348 Sum_probs=40.1
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE--CCEEEe
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV----N--RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI--KGRYVG 255 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~----~--gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV--dG~~IG 255 (333)
|+.|.+++ |++|+.+...|+. + ++.|-.+|++.+.++. +.+ | ...+|.+++ +|+.+.
T Consensus 18 vi~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~----~~~-~-v~~~P~~~~~~~g~~~~ 82 (101)
T TIGR01068 18 LVDFWAPW------CGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIA----AKY-G-IRSIPTLLLFKNGKEVD 82 (101)
T ss_pred EEEEECCC------CHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHH----HHc-C-CCcCCEEEEEeCCcEee
Confidence 55556665 9999999877765 2 4778899988776543 344 5 788999765 776543
No 102
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=95.42 E-value=0.037 Score=45.63 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=27.1
Q ss_pred CChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 200 TYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 200 tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
.|.-|++|+++|+.+||.|+++|+..++--+++|.++.
T Consensus 5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l 42 (110)
T PF03960_consen 5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL 42 (110)
T ss_dssp T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence 49999999999999999999999988765555555544
No 103
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=95.41 E-value=0.055 Score=40.62 Aligned_cols=66 Identities=11% Similarity=0.002 Sum_probs=48.7
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEECCEEEecchhhH
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELT 261 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~ 261 (333)
.+|.... .+++.+++.+|+.+|++|+.++++.. .....++.+.. . ...+|.+..+|..|.....+.
T Consensus 2 ~l~~~~~------s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~n-P-~~~vP~L~~~~~~l~eS~aI~ 69 (73)
T cd03047 2 TIWGRRS------SINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMN-P-NGRVPVLEDGDFVLWESNAIL 69 (73)
T ss_pred EEEecCC------CcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhC-C-CCCCCEEEECCEEEECHHHHH
Confidence 5777665 68999999999999999998887532 22345666665 4 779999988887766555443
No 104
>PRK09381 trxA thioredoxin; Provisional
Probab=95.37 E-value=0.13 Score=41.15 Aligned_cols=61 Identities=10% Similarity=0.250 Sum_probs=43.0
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE--CCEEEec
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEV----N--RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI--KGRYVGG 256 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~----~--gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV--dG~~IGG 256 (333)
.-||.|.++| |+.|+.+...|+. + ++.+..+|++....+ ...+ + ..++|.+++ +|+.++-
T Consensus 23 ~vvv~f~~~~------C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~-~-v~~~Pt~~~~~~G~~~~~ 90 (109)
T PRK09381 23 AILVDFWAEW------CGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKY-G-IRGIPTLLLFKNGEVAAT 90 (109)
T ss_pred eEEEEEECCC------CHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhC-C-CCcCCEEEEEeCCeEEEE
Confidence 3466677776 9999999877764 2 467888898877654 3344 5 889998754 8887654
Q ss_pred c
Q 044679 257 V 257 (333)
Q Consensus 257 ~ 257 (333)
+
T Consensus 91 ~ 91 (109)
T PRK09381 91 K 91 (109)
T ss_pred e
Confidence 3
No 105
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.36 E-value=0.057 Score=44.75 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=43.1
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEEecc
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV-----NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYVGGV 257 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~-----~gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~IGG~ 257 (333)
-||.|+.+| |+.|+.+...|+. .++.|..+|++...++ .+.. + ..++|.+ |-+|+.++-.
T Consensus 25 vvV~f~a~~------c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l----~~~~-~-v~~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 25 VVCHFYHPE------FFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFL----VEKL-N-IKVLPTVILFKNGKTVDRI 91 (113)
T ss_pred EEEEEECCC------CccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHH----HHHC-C-CccCCEEEEEECCEEEEEE
Confidence 355666676 9999999888866 2688999999887654 4444 5 7788886 5588766433
No 106
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.23 E-value=0.088 Score=44.79 Aligned_cols=58 Identities=12% Similarity=0.224 Sum_probs=43.5
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEEe
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----R-VVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYVG 255 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----g-V~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~IG 255 (333)
-||-|+.+| |+.|+.+.-+|+.. + +.|..+|++.+++ |.+.+ | ..++|++ |-+|+.++
T Consensus 17 vVV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~-~-V~~iPTf~~fk~G~~v~ 82 (114)
T cd02954 17 VVIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMY-E-LYDPPTVMFFFRNKHMK 82 (114)
T ss_pred EEEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHc-C-CCCCCEEEEEECCEEEE
Confidence 356688888 99999998888653 3 5788999998875 44455 5 8889987 45888664
No 107
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=95.20 E-value=0.059 Score=40.17 Aligned_cols=68 Identities=10% Similarity=-0.067 Sum_probs=48.9
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
.+|+... +.+.+++.+|+..|++|+.+.++.. .....++.+.. . ...+|.+..+|..|.....+.+..
T Consensus 2 ~l~~~~~-------~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-p-~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 2 TLYHLPR-------SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAIN-P-LGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred EEEeCCC-------CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 4676542 3688999999999999998877643 22235566655 3 788999998988887776665543
No 108
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.18 E-value=0.041 Score=56.64 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=45.7
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEe
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVG 255 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IG 255 (333)
+.-.|.+|.+.. ||||..++..++.. +|..+-+|....++ +.+.+ + ..+||++||||+.++
T Consensus 117 ~~~~i~~f~~~~------Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~-~-v~~VP~~~i~~~~~~ 182 (515)
T TIGR03140 117 GPLHFETYVSLT------CQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEAL-G-IQGVPAVFLNGEEFH 182 (515)
T ss_pred CCeEEEEEEeCC------CCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhc-C-CcccCEEEECCcEEE
Confidence 445699999995 99999999998765 55566667655544 33445 5 779999999998654
No 109
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=95.11 E-value=0.13 Score=39.96 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=39.8
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYV 254 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~I 254 (333)
-||.|.++| |+.|+++...|... ++.+..+|++.+.+ |...+ + ...+|+++ -+|+.+
T Consensus 15 vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~-~-i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 15 VVVDFWAPR------SPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQF-G-VQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEEECCC------ChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHc-C-CCCCCEEEEEeCCEEe
Confidence 356677776 99999998777642 35577888877754 44445 5 78899975 477654
No 110
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=95.08 E-value=0.068 Score=40.34 Aligned_cols=67 Identities=12% Similarity=0.040 Sum_probs=46.5
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHHhCCCcceecEEEEC-CEEEecchhhHhH
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHG--QFLNELKDLFGGETVTVPRVFIK-GRYVGGVDELTEL 263 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~--e~reELkels~G~~~TvPqVFVd-G~~IGG~Del~eL 263 (333)
.+|+... + .+.+++.+|..+|++|+.++++... ....++.+.. . ...+|.+..+ |..+.....+.+.
T Consensus 2 ~Ly~~~~------~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~n-p-~~~vP~l~~~~g~~l~eS~aI~~y 71 (77)
T cd03057 2 KLYYSPG------A-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAIN-P-KGQVPALVLDDGEVLTESAAILQY 71 (77)
T ss_pred EEEeCCC------C-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhC-C-CCCCCEEEECCCcEEEcHHHHHHH
Confidence 5777663 3 4788999999999999887775432 2345666765 4 7899999887 6666555554443
No 111
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.08 E-value=0.049 Score=56.01 Aligned_cols=61 Identities=20% Similarity=0.303 Sum_probs=46.5
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEe
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVG 255 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IG 255 (333)
+.-.|.+|.+.. ||||.++...++.. .|.++.+|....+++ .+.+ + ..+||++||||+.+.
T Consensus 116 ~~~~i~~fv~~~------Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~----~~~~-~-v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 116 GDFHFETYVSLS------CHNCPDVVQALNLMAVLNPNITHTMIDGALFQDE----VEAR-N-IMAVPTVFLNGEEFG 181 (517)
T ss_pred CCeEEEEEEcCC------CCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhH----HHhc-C-CcccCEEEECCcEEE
Confidence 345699999996 99999999988764 566777777666543 3445 5 789999999997654
No 112
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=94.91 E-value=0.17 Score=40.87 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=42.3
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYV 254 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~I 254 (333)
-||.|+.+| |+.|+.+...|+.. ++.|..+|++.+... .+|.+.. + ...+|+++ -+|+.+
T Consensus 18 vvv~F~a~w------C~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~-~-V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 18 VVLEFALKH------SGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRRE-K-IIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEEECCC------CHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHc-C-CCcCCEEEEEeCCeEE
Confidence 466677777 99999888888753 677888998876543 3455555 5 78899764 478754
No 113
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.70 E-value=0.12 Score=47.13 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=42.1
Q ss_pred CCcEEEEEc---ccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE--CCEE
Q 044679 184 SDGVVIYTT---SLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI--KGRY 253 (333)
Q Consensus 184 ~~kVVIYTt---SlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV--dG~~ 253 (333)
.-.|++|++ +| |+.|+.+..+|+.. ++.+..+|++.+. ..++.+.+ + ...+|.+.+ +|+.
T Consensus 20 ~~~i~~f~~~~a~w------C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~-~-V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 20 PVEIVVFTDNDKEG------CQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKY-G-VERVPTTIILEEGKD 89 (215)
T ss_pred CeEEEEEcCCCCCC------CCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHc-C-CCccCEEEEEeCCee
Confidence 345888988 77 99999999988764 3556677776432 13455555 6 888999754 6554
Q ss_pred E
Q 044679 254 V 254 (333)
Q Consensus 254 I 254 (333)
+
T Consensus 90 ~ 90 (215)
T TIGR02187 90 G 90 (215)
T ss_pred e
Confidence 4
No 114
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=94.69 E-value=0.15 Score=40.71 Aligned_cols=68 Identities=15% Similarity=0.216 Sum_probs=38.9
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHh---------CCCcEEEEECCCCHH----------------HHHHHHHHhC
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEV---------NRVVTDERDVSLHGQ----------------FLNELKDLFG 238 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~---------~gV~yeErDVs~d~e----------------~reELkels~ 238 (333)
...|++|+..+ |++|+++...|.. .++.+..+++..+.. ...+|...+
T Consensus 6 k~~v~~F~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 78 (112)
T PF13098_consen 6 KPIVVVFTDPW------CPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRY- 78 (112)
T ss_dssp SEEEEEEE-TT-------HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHT-
T ss_pred CEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHc-
Confidence 34466676665 9999988666652 135566777765432 224566677
Q ss_pred CCcceecEEEE-C--CE---EEecchh
Q 044679 239 GETVTVPRVFI-K--GR---YVGGVDE 259 (333)
Q Consensus 239 G~~~TvPqVFV-d--G~---~IGG~De 259 (333)
| ...+|.+++ + |+ .+-|+-.
T Consensus 79 ~-v~gtPt~~~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 79 G-VNGTPTIVFLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp T---SSSEEEECTTTSCEEEEEESS--
T ss_pred C-CCccCEEEEEcCCCCEEEEecCCCC
Confidence 6 888999864 4 66 4456544
No 115
>PRK10996 thioredoxin 2; Provisional
Probab=94.63 E-value=0.12 Score=44.34 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=40.4
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYV 254 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~I 254 (333)
-+|.|+++| |+.|+++...|... ++.|..+|++.+.++ .+.+ + ..++|.++ -+|+.+
T Consensus 55 vvv~F~a~w------C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~-~-V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPW------CGPCRNFAPIFEDVAAERSGKVRFVKVNTEAEREL----SARF-R-IRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHH----HHhc-C-CCccCEEEEEECCEEE
Confidence 467777777 99999887777542 466788888877654 3444 5 77888874 478755
No 116
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=94.40 E-value=0.14 Score=42.11 Aligned_cols=57 Identities=12% Similarity=0.236 Sum_probs=36.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHH---------hCCCcEEEEECCCCHHH---------HHHHHHHhCCCcceecEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFE---------VNRVVTDERDVSLHGQF---------LNELKDLFGGETVTVPRV 247 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~---------~~gV~yeErDVs~d~e~---------reELkels~G~~~TvPqV 247 (333)
-+|.|+++| |++|+++...|. ..++.+..+|++.+... ..+|...+ + ...+|.+
T Consensus 17 vlv~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~-~-v~~~Pt~ 88 (125)
T cd02951 17 LLLLFSQPG------CPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY-R-VRFTPTV 88 (125)
T ss_pred EEEEEeCCC------CHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc-C-CccccEE
Confidence 366777776 999998875442 12566777787654211 24566666 6 7889996
Q ss_pred -EEC
Q 044679 248 -FIK 250 (333)
Q Consensus 248 -FVd 250 (333)
|++
T Consensus 89 ~~~~ 92 (125)
T cd02951 89 IFLD 92 (125)
T ss_pred EEEc
Confidence 454
No 117
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.38 E-value=0.095 Score=54.60 Aligned_cols=58 Identities=24% Similarity=0.293 Sum_probs=45.4
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHh----C-CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEE
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEV----N-RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRY 253 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~----~-gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~ 253 (333)
.-.|.||.+.+ |++|.++.+.++. + +|.++.+|+...++ +.+.+ + ..+||.+||||+.
T Consensus 477 ~~~i~v~~~~~------C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~-~-v~~vP~~~i~~~~ 539 (555)
T TIGR03143 477 PVNIKIGVSLS------CTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEY-G-IMSVPAIVVDDQQ 539 (555)
T ss_pred CeEEEEEECCC------CCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhC-C-ceecCEEEECCEE
Confidence 34688888885 9999988876654 4 79999999987754 44445 6 8999999999963
No 118
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=94.37 E-value=0.11 Score=40.07 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=38.2
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHh-------C-CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEV-------N-RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~-------~-gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
+..-||+|++++ |+.|+.+...|+. . ++.+..+|++.+..+ .+.+ + ...+|.+|+
T Consensus 13 ~~~~~i~f~~~~------C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~-~-i~~~P~~~~ 75 (102)
T TIGR01126 13 NKDVLVEFYAPW------CGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDL----ASRF-G-VSGFPTIKF 75 (102)
T ss_pred CCcEEEEEECCC------CHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHH----HHhC-C-CCcCCEEEE
Confidence 334578888887 9999987666644 1 367788888766543 3445 5 788999854
No 119
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.048 Score=48.73 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=52.2
Q ss_pred cCCCCCcCCCCCCCCcEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCccee
Q 044679 171 PLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTV 244 (333)
Q Consensus 171 ~l~~~~~~~pp~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~Tv 244 (333)
...+|+.+..-.+..-||.|...| |.-|+.+.-+|+.+ .+.+-.+|++.+.++ ...+ + ...+
T Consensus 49 s~~~~~~~Vi~S~~PVlVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~el----a~~Y-~-I~av 116 (150)
T KOG0910|consen 49 SDSEFDDKVINSDVPVLVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPEL----AEDY-E-ISAV 116 (150)
T ss_pred CHHHHHHHHHccCCCEEEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccch----Hhhc-c-eeee
Confidence 344555555444556688999999 89999999888864 466888899888764 4445 5 8889
Q ss_pred cEE--EECCEEE
Q 044679 245 PRV--FIKGRYV 254 (333)
Q Consensus 245 PqV--FVdG~~I 254 (333)
|.| |-||+-+
T Consensus 117 PtvlvfknGe~~ 128 (150)
T KOG0910|consen 117 PTVLVFKNGEKV 128 (150)
T ss_pred eEEEEEECCEEe
Confidence 997 5688643
No 120
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=94.24 E-value=0.27 Score=38.14 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=39.3
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV------NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYV 254 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~------~gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~I 254 (333)
+|.|..+| |..|+++...|+. ..+.+..+|++...+ +.+.+ + ...+|.+ |.+|+.+
T Consensus 18 ~v~f~~~~------C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~-~-i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPW------AEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKF-E-ITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCC------CHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhc-C-CccccEEEEEECCEEE
Confidence 56777776 9999999888875 256677777766554 44445 5 7789975 4577654
No 121
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=93.99 E-value=0.25 Score=41.97 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=46.0
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEE
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----R-VVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYV 254 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----g-V~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~I 254 (333)
+...|+.|+.+|. .|+.|..+.-+|+.. + +.|..+|++.++ +|...+ + ..++|++ |-+|+.+
T Consensus 27 ~~~~v~~f~~~~~----~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f-~-V~sIPTli~fkdGk~v 96 (111)
T cd02965 27 GGDLVLLLAGDPV----RFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARF-G-VLRTPALLFFRDGRYV 96 (111)
T ss_pred CCCEEEEecCCcc----cCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHc-C-CCcCCEEEEEECCEEE
Confidence 3445666776651 299999999888753 2 557788988876 455556 6 8889986 5599887
Q ss_pred ecc
Q 044679 255 GGV 257 (333)
Q Consensus 255 GG~ 257 (333)
+..
T Consensus 97 ~~~ 99 (111)
T cd02965 97 GVL 99 (111)
T ss_pred EEE
Confidence 654
No 122
>PRK15113 glutathione S-transferase; Provisional
Probab=93.98 E-value=0.21 Score=45.02 Aligned_cols=72 Identities=10% Similarity=0.051 Sum_probs=51.9
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSL--HGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~--d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
.+++|+... .++++|.+++-+|..+||+|+.+.|+. .+....++.++. - ...||++..+|..|--...+.+.
T Consensus 5 ~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~n-P-~g~VP~L~~~~~~l~ES~aI~~Y 78 (214)
T PRK15113 5 AITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYS-L-TRRVPTLQHDDFELSESSAIAEY 78 (214)
T ss_pred eEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcC-C-CCCCCEEEECCEEEecHHHHHHH
Confidence 478998652 138999999999999999999887764 222335666665 2 67899999988766555444443
No 123
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=93.90 E-value=0.21 Score=44.83 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=41.2
Q ss_pred cEEE-EEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEEecc
Q 044679 186 GVVI-YTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYVGGV 257 (333)
Q Consensus 186 kVVI-YTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~IGG~ 257 (333)
.||| |+.+| |+.|+.+...|+.+ .+.|..+|++.. ++...+ + ...+|.+ |.+|+.++.+
T Consensus 85 ~VVV~Fya~w------c~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f-~-v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 85 TVVVHIYEPG------IPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEF-D-TDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEEEECCC------CchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhC-C-CCCCCEEEEEECCEEEEEE
Confidence 4554 55565 99999888877653 577888888743 455666 5 7889986 5599877543
No 124
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=93.77 E-value=0.31 Score=38.56 Aligned_cols=55 Identities=11% Similarity=0.045 Sum_probs=38.6
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECC
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEV----N--RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKG 251 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~----~--gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG 251 (333)
.-+|.|+++| |+.|+++...|+. + ++.+-.+|.+.+.+ +.+.. | ...+|+++ .+|
T Consensus 21 ~v~v~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~-i~~~Pt~~~~~~g 83 (104)
T cd03004 21 PWLVDFYAPW------CGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQA-N-IRAYPTIRLYPGN 83 (104)
T ss_pred eEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHc-C-CCcccEEEEEcCC
Confidence 3467788887 9999988777654 2 46788899887654 33444 5 78899874 355
No 125
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=93.71 E-value=0.51 Score=38.58 Aligned_cols=59 Identities=14% Similarity=0.224 Sum_probs=40.6
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEEe
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEV-------NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYVG 255 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~-------~gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~IG 255 (333)
.-+|.|.++| |+.|+.+..+|+. .++.+-.+|++.+..+ .... | ..++|.++ .+|+.++
T Consensus 26 ~vlV~F~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l----~~~~-~-V~~~Pt~~i~~~g~~~~ 93 (111)
T cd02963 26 PYLIKITSDW------CFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRL----ARKL-G-AHSVPAIVGIINGQVTF 93 (111)
T ss_pred eEEEEEECCc------cHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHH----HHHc-C-CccCCEEEEEECCEEEE
Confidence 3466777787 9999877655432 3677888888876543 3444 5 88899874 5787553
No 126
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.64 E-value=0.48 Score=44.42 Aligned_cols=35 Identities=6% Similarity=0.128 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcccCCCCCCChhHHHHHHHHHhC---CCcEEEEE
Q 044679 182 GGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN---RVVTDERD 222 (333)
Q Consensus 182 ~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~---gV~yeErD 222 (333)
.+...|++|+-.. ||||+++...|..+ +|.+..+.
T Consensus 106 ~~k~~I~vFtDp~------CpyCkkl~~~l~~~~~~~v~v~~~~ 143 (232)
T PRK10877 106 QEKHVITVFTDIT------CGYCHKLHEQMKDYNALGITVRYLA 143 (232)
T ss_pred CCCEEEEEEECCC------ChHHHHHHHHHHHHhcCCeEEEEEe
Confidence 3556688888774 99999998888774 56655543
No 127
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=93.58 E-value=0.35 Score=38.82 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=37.5
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHh----C---CCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEV----N---RVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRY 253 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~----~---gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~ 253 (333)
.-||.|+.+| |+.|+.+...|+. + .+.|..+|++ +.+ +.+.+ + ...+|.+ |-+|+.
T Consensus 19 ~vvv~F~a~w------C~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~-~-v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 19 LTVVDVYQEW------CGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRY-R-GKCEPTFLFYKNGEL 83 (102)
T ss_pred eEEEEEECCc------CHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHc-C-CCcCcEEEEEECCEE
Confidence 3467777887 9999988877764 2 2557778877 332 33444 5 7888875 447764
No 128
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=93.51 E-value=0.52 Score=40.20 Aligned_cols=62 Identities=8% Similarity=0.079 Sum_probs=44.9
Q ss_pred CCCcEEEEEcccCCCCCCCh--hHH----------HHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--E
Q 044679 183 GSDGVVIYTTSLRGVRRTYE--DCN----------RVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--F 248 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp--~C~----------~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqV--F 248 (333)
.+..||+|...++ |. +|+ .+.++|+..+|.|-.+|++.+++ |...+ | ..++|++ |
T Consensus 26 ~~~~vvv~f~a~w-----c~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~-~-I~~iPTl~lf 94 (120)
T cd03065 26 YDVLCLLYHEPVE-----SDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKL-G-LDEEDSIYVF 94 (120)
T ss_pred CCceEEEEECCCc-----CChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHc-C-CccccEEEEE
Confidence 3456888888874 43 586 34456667789999999998865 44445 6 8888986 6
Q ss_pred ECCEEEe
Q 044679 249 IKGRYVG 255 (333)
Q Consensus 249 VdG~~IG 255 (333)
.+|+.+.
T Consensus 95 k~G~~v~ 101 (120)
T cd03065 95 KDDEVIE 101 (120)
T ss_pred ECCEEEE
Confidence 7998664
No 129
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.06 Score=53.58 Aligned_cols=21 Identities=29% Similarity=0.790 Sum_probs=15.4
Q ss_pred ccccCCCcCcCCcccCCCCCC
Q 044679 313 DKQRCGVCNENGLVHCPACSS 333 (333)
Q Consensus 313 ~~~rC~~CNENGL~rCp~C~~ 333 (333)
+.++|+.|.--|++.|..|.+
T Consensus 244 G~~~C~tC~grG~k~C~TC~g 264 (406)
T KOG2813|consen 244 GIKECHTCKGRGKKPCTTCSG 264 (406)
T ss_pred CcccCCcccCCCCcccccccC
Confidence 567777777777777777753
No 130
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=93.27 E-value=0.31 Score=36.77 Aligned_cols=53 Identities=19% Similarity=0.337 Sum_probs=36.3
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHh----C----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEV----N----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~----~----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
.-+|+|++++ |+.|+.+...|+. . ++.|..+|.+.+.. +.+.+ + ...+|.+++
T Consensus 17 ~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~-~-i~~~Pt~~~ 77 (101)
T cd02961 17 DVLVEFYAPW------CGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND----LCSEY-G-VRGYPTIKL 77 (101)
T ss_pred cEEEEEECCC------CHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH----HHHhC-C-CCCCCEEEE
Confidence 4467777776 9999998887754 3 45567777666443 44445 5 788998854
No 131
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=93.12 E-value=0.5 Score=36.45 Aligned_cols=67 Identities=16% Similarity=0.102 Sum_probs=45.1
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--HhCCCcceecEEEECCEEEecchhhHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKD--LFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELke--ls~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
.++|.... .+.|.+++.+|+..|++|+.+.++...++.+ +.. .. - ...+|.+.+||..|.....+..
T Consensus 2 ~~Ly~~~~------~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~-~-~g~vP~L~~~g~~l~ES~AI~~ 70 (79)
T cd03077 2 PVLHYFNG------RGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSL-M-FQQVPMVEIDGMKLVQTRAILN 70 (79)
T ss_pred CEEEEeCC------CChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCC-C-CCCCCEEEECCEEEeeHHHHHH
Confidence 46777764 4588899999999999999888765443321 111 11 1 4589999888876665554433
No 132
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.34 Score=46.14 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=54.1
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHH-HHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLN-ELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~re-ELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
++.|.||+.-. |||-+|++-.|+.+||+|+.++++... +. -|.+.. --...||++..+|+-|+-.-.+.+
T Consensus 7 ~~~vrL~~~w~------sPfa~R~~iaL~~KgI~yE~veedl~~--Ks~~ll~~n-p~hkKVPvL~Hn~k~i~ESliive 77 (231)
T KOG0406|consen 7 DGTVKLLGMWF------SPFAQRVRIALKLKGIPYEYVEEDLTN--KSEWLLEKN-PVHKKVPVLEHNGKPICESLIIVE 77 (231)
T ss_pred CCeEEEEEeec------ChHHHHHHHHHHhcCCceEEEecCCCC--CCHHHHHhc-cccccCCEEEECCceehhhHHHHH
Confidence 37899999885 999999999999999999988876532 22 233333 136789999999998876655544
Q ss_pred HH
Q 044679 263 LN 264 (333)
Q Consensus 263 L~ 264 (333)
..
T Consensus 78 Yi 79 (231)
T KOG0406|consen 78 YI 79 (231)
T ss_pred HH
Confidence 43
No 133
>PRK10767 chaperone protein DnaJ; Provisional
Probab=93.04 E-value=0.092 Score=52.29 Aligned_cols=49 Identities=29% Similarity=0.748 Sum_probs=32.8
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecCC---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLATG---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-+++...+ ....|+.|+-.|.+ +|+.|.
T Consensus 142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK10767 142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCH 202 (371)
T ss_pred cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCC
Confidence 456777777663 47888888876654433 24578888887755 677774
No 134
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=93.02 E-value=0.32 Score=38.41 Aligned_cols=55 Identities=9% Similarity=0.132 Sum_probs=38.9
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGR 252 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~ 252 (333)
-+|.|+++| |+.|+++...|+.. .+.+-.+|++.+..+ .+.. + ...+|+++ -+|+
T Consensus 21 ~~v~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~----~~~~-~-v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPR------CSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRML----CRSQ-G-VNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCC------ChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHH----HHHc-C-CCccCEEEEEcCCC
Confidence 467788887 99999988887642 356778888876543 3344 5 78889874 4665
No 135
>PLN02473 glutathione S-transferase
Probab=92.92 E-value=0.31 Score=43.48 Aligned_cols=70 Identities=16% Similarity=-0.032 Sum_probs=50.5
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
+.||+... ++++.+++-+|..+||+|+.+.++.. .....++.++. - ...||.+..+|..|.....+.+..
T Consensus 3 ~kLy~~~~------s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~n-P-~g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 3 VKVYGQIK------AANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQ-P-FGQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred eEEecCCC------CCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhC-C-CCCCCeEEECCEEEEehHHHHHHH
Confidence 56887664 78999999999999999988765422 22334444554 3 678999999998887776666543
No 136
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=92.89 E-value=0.32 Score=38.99 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=39.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC------------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECC
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN------------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKG 251 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------------gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG 251 (333)
-+|.|.++| |++|+++...|+.. .+.|-.+|.+.+.+ |.... | ..++|.++ -+|
T Consensus 21 vlv~F~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~-~-v~~~Ptl~~~~~g 88 (108)
T cd02996 21 VLVNFYADW------CRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRY-R-INKYPTLKLFRNG 88 (108)
T ss_pred EEEEEECCC------CHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhC-C-CCcCCEEEEEeCC
Confidence 467788887 99999998877531 36778888887754 44555 6 88999874 466
Q ss_pred E
Q 044679 252 R 252 (333)
Q Consensus 252 ~ 252 (333)
+
T Consensus 89 ~ 89 (108)
T cd02996 89 M 89 (108)
T ss_pred c
Confidence 5
No 137
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=92.86 E-value=0.38 Score=37.81 Aligned_cols=55 Identities=13% Similarity=0.271 Sum_probs=40.2
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE--CCE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV-------NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI--KGR 252 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~-------~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV--dG~ 252 (333)
-+|.|..+| |+.|+++...|+. .+|.+..+|++.+..+ ...+ + ..++|.+++ +|+
T Consensus 19 ~lv~f~a~w------C~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~----~~~~-~-i~~~Pt~~~~~~g~ 82 (101)
T cd02994 19 WMIEFYAPW------CPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGL----SGRF-F-VTALPTIYHAKDGV 82 (101)
T ss_pred EEEEEECCC------CHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhH----HHHc-C-CcccCEEEEeCCCC
Confidence 588888888 9999998877754 2567888888876653 3444 5 788999865 554
No 138
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=92.82 E-value=0.11 Score=39.55 Aligned_cols=46 Identities=33% Similarity=0.793 Sum_probs=27.8
Q ss_pred ccCCCCcce------eeCCCCCCcceeeecC----C---ccccCCCcCcCCccc----CCCCC
Q 044679 287 CEGCGGARF------VPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLVH----CPACS 332 (333)
Q Consensus 287 C~~CgG~rf------vpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~r----Cp~C~ 332 (333)
|..|.|.+. ..|..|+|+-.++... + ....|+.|+=.|.+. |+.|.
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~ 63 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCK 63 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSST
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCC
Confidence 444554444 7888888886666432 1 367899998888775 77774
No 139
>PRK14300 chaperone protein DnaJ; Provisional
Probab=92.82 E-value=0.097 Score=52.29 Aligned_cols=49 Identities=29% Similarity=0.745 Sum_probs=35.7
Q ss_pred CccccCCCCcc------eeeCCCCCCcceeeecCC---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGAR------FVPCFDCGGSCKVVLATG---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~r------fvpC~~C~GS~K~~~~~~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+ ...|..|+|+-+++...+ ....|+.|+-.|-+ +|+.|.
T Consensus 145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (372)
T PRK14300 145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCH 205 (372)
T ss_pred ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCC
Confidence 45688888765 477999999977665433 34689999988855 688885
No 140
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=92.74 E-value=0.18 Score=44.57 Aligned_cols=62 Identities=21% Similarity=0.105 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 201 YEDCNRVRSIFEVNRVVTDERDVSLH---GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 201 Cp~C~~aK~lL~~~gV~yeErDVs~d---~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
++++.+++.+|..+||+|+.+.++.. .....++.+.. - ..++|.+..+|..|-....+.+..
T Consensus 8 s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~n-P-~g~vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 8 SSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALN-P-QGLVPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred CCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcC-C-CCcCCEEEECCEEeecHHHHHHHH
Confidence 78999999999999999999887641 12234566654 3 789999999998877766665543
No 141
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=92.52 E-value=0.28 Score=46.82 Aligned_cols=62 Identities=21% Similarity=0.201 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 200 TYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 200 tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
.||+|++++-+|+.+||+|+.+.|+... .-.++.++. ....||.+..+|..|.....+.+..
T Consensus 72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iN--P~GkVPvL~~d~~~L~ES~aI~~YL 133 (265)
T PLN02817 72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKIS--PEGKVPVVKLDEKWVADSDVITQAL 133 (265)
T ss_pred CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhC--CCCCCCEEEECCEEEecHHHHHHHH
Confidence 4999999999999999999987775432 123455554 2679999999998776666655543
No 142
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.095 Score=52.92 Aligned_cols=49 Identities=33% Similarity=0.737 Sum_probs=40.6
Q ss_pred CccccCCCCc------ceeeCCCCCCcceeeecC--C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGA------RFVPCFDCGGSCKVVLAT--G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~------rfvpC~~C~GS~K~~~~~--~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|. .-..|..|||+-.+.... + ....|+.||-.|-+ +|+.|.
T Consensus 142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~ 204 (371)
T COG0484 142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCK 204 (371)
T ss_pred eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCC
Confidence 5689999999 678999999997665544 3 57899999999987 599995
No 143
>PLN02378 glutathione S-transferase DHAR1
Probab=92.19 E-value=0.34 Score=43.90 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 199 RTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 199 ~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
..|++|++|+-+|+.+|++|+.+.|+.... -+++.++. - ..+||.+..+|..|.-...+.+.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~in-P-~G~VPvL~~~~~~l~ES~aI~~Y 79 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDIS-P-QGKVPVLKIDDKWVTDSDVIVGI 79 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhC-C-CCCCCEEEECCEEecCHHHHHHH
Confidence 459999999999999999998777764321 23556665 3 78999998888766555444443
No 144
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=92.14 E-value=0.61 Score=40.21 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=38.9
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE-E--CCEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF-I--KGRYV 254 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqVF-V--dG~~I 254 (333)
-||.|..+| |+.|+.+...|..+ ++.|..+|++.+. . ..+...+ + ...+|.++ + +|+.+
T Consensus 23 vvV~F~A~W------C~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~-~-V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 23 TLVEFYADW------CTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRY-R-VDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEEECCc------CHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHc-C-CCCCCEEEEECCCCCEE
Confidence 466777777 99999988877642 3567778876542 1 2333445 5 78899874 4 46644
No 145
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=91.93 E-value=0.06 Score=49.66 Aligned_cols=87 Identities=20% Similarity=0.369 Sum_probs=61.3
Q ss_pred eecEEEECCEEEecchhhHhHHHhCcHHHHHHhhhhhcccCCccccCCCCcceeeCCCCCCcceeeecC--CccccCCCc
Q 044679 243 TVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLAT--GDKQRCGVC 320 (333)
Q Consensus 243 TvPqVFVdG~~IGG~Del~eL~EsGeL~~lLk~~~~~~g~~~~~C~~CgG~rfvpC~~C~GS~K~~~~~--~~~~rC~~C 320 (333)
..|.-+++.-++-...+|.++ .+|.|.+.|+.+-......-..|+.|-+.|| .|..|+.+ .++.-. ....||+.|
T Consensus 102 ~~~~hl~~~~~~YSl~DL~~v-~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~-~~IfPF~~~~~~~C~~C 178 (202)
T PF13901_consen 102 QPRDHLLEDPHLYSLADLVQV-KSGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSD-DIIFPFQIDTTVRCPKC 178 (202)
T ss_pred cchhhhhhCCceEcHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCC-CCCCCCCCCCeeeCCcC
Confidence 445556777777778888877 5799988887764432223458999999999 59999998 444433 368999988
Q ss_pred CcCC------cccCCCCC
Q 044679 321 NENG------LVHCPACS 332 (333)
Q Consensus 321 NENG------L~rCp~C~ 332 (333)
+--= ...||.|.
T Consensus 179 ~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 179 KSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred ccccchhhcCCCCCCCcH
Confidence 7421 15677774
No 146
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=91.93 E-value=0.66 Score=36.12 Aligned_cols=52 Identities=13% Similarity=0.294 Sum_probs=36.1
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV------NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~------~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
-+++|..+| |+.|+++...|.. ..+.|-.+|++.+.++ .+.. + ...+|.+++
T Consensus 21 vlv~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~-~-i~~~P~~~~ 78 (103)
T cd03001 21 WLVEFYAPW------CGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSL----AQQY-G-VRGFPTIKV 78 (103)
T ss_pred EEEEEECCC------CHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHH----HHHC-C-CCccCEEEE
Confidence 366666666 9999998877754 2466788888766543 3445 5 788998743
No 147
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=91.89 E-value=0.75 Score=40.72 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=41.3
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEEe
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV-------NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYVG 255 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~-------~gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~IG 255 (333)
||.|.++| |+.|+.+...|+. .++.|-.+|++.++++.+.+.-...-+...+|++ |.+|+.++
T Consensus 51 vV~Fya~w------C~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTW------SPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCC------CHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 77788887 9999998877753 2478899999988765444321000001238876 66887664
No 148
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=91.61 E-value=0.53 Score=36.50 Aligned_cols=52 Identities=15% Similarity=0.266 Sum_probs=35.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh----C----CCcEEEEECCC-CHHHHHHHHHHhCCCcceecEEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV----N----RVVTDERDVSL-HGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~----~----gV~yeErDVs~-d~e~reELkels~G~~~TvPqVFV 249 (333)
-|+.|+++| |+.|+++...|+. + ++.+..+|.+. +..+. ..+ + ...+|.+++
T Consensus 21 ~~v~f~a~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~-~-i~~~P~~~~ 81 (105)
T cd02998 21 VLVEFYAPW------CGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLA----KKY-G-VSGFPTLKF 81 (105)
T ss_pred EEEEEECCC------CHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhH----HhC-C-CCCcCEEEE
Confidence 467777776 9999988777654 2 36677788777 55443 334 5 788998754
No 149
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=91.60 E-value=1.3 Score=39.69 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcccCCCCCCChhHHHHHHHHH--hCCCcEEEEEC
Q 044679 182 GGSDGVVIYTTSLRGVRRTYEDCNRVRSIFE--VNRVVTDERDV 223 (333)
Q Consensus 182 ~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~--~~gV~yeErDV 223 (333)
.+...|++|+-.. |+||+++...|. ..+|.+..+-+
T Consensus 76 ~~~~~i~~f~D~~------Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 76 NGKRVVYVFTDPD------CPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred CCCEEEEEEECCC------CccHHHHHHHHhhccCceEEEEEEc
Confidence 3456777888764 999999999997 45666555543
No 150
>PRK14285 chaperone protein DnaJ; Provisional
Probab=91.56 E-value=0.19 Score=50.13 Aligned_cols=49 Identities=33% Similarity=0.733 Sum_probs=32.3
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecCC---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLATG---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++...+ ....|+.|+-.|-+ +|+.|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 206 (365)
T PRK14285 146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCK 206 (365)
T ss_pred cccCCCCCCcccCCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCC
Confidence 456777777663 46888888876654332 24678888877754 577774
No 151
>PRK14284 chaperone protein DnaJ; Provisional
Probab=91.31 E-value=0.2 Score=50.46 Aligned_cols=49 Identities=33% Similarity=0.769 Sum_probs=30.7
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecCC---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLATG---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++...+ ....|+.|+-.|-+ +|+.|.
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (391)
T PRK14284 158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCR 218 (391)
T ss_pred eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCC
Confidence 456777766654 45788888765543322 24577777777754 577774
No 152
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=91.15 E-value=1.4 Score=33.96 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=45.3
Q ss_pred CCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHHH
Q 044679 196 GVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELNE 265 (333)
Q Consensus 196 giR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~E 265 (333)
|.-...++|-++..+|+-.|++|+.+... ++. . +....+|.|..+|+.|+|++.+.+..+
T Consensus 11 g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~--sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 11 GLPSVDPECLAVLAYLKFAGAPLKVVPSN-NPW-------R--SPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCCcCCHHHHHHHHHHHcCCCCEEEEecC-CCC-------C--CCCCccCEEEECCEEecChHHHHHHHH
Confidence 45556799999999999999999765433 211 1 114579999999999999998877643
No 153
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=91.13 E-value=0.62 Score=36.84 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=36.4
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
-+|.|.++| |++|+++...|+.. .+.+..+|++.+. ..++.... + ...+|.+++
T Consensus 21 ~lv~f~a~w------C~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~-~-i~~~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPW------CGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKY-G-VQGFPTLKV 80 (109)
T ss_pred EEEEEECCC------CHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHc-C-CCcCCEEEE
Confidence 577788887 99999887766543 3556777877632 12344445 5 788999864
No 154
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=91.04 E-value=0.91 Score=36.62 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=38.2
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECC-CCHHHHHHHHHHhCCCcceecEEEE
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVS-LHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs-~d~e~reELkels~G~~~TvPqVFV 249 (333)
..-+|.|+.+| |+.|+.+.-.|+.. ++.+..+|.+ .+. .+.+.+ + ...+|++++
T Consensus 19 ~~vlV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~-~-V~~~PT~~l 78 (100)
T cd02999 19 DYTAVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRY-G-VVGFPTILL 78 (100)
T ss_pred CEEEEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhc-C-CeecCEEEE
Confidence 34578888888 99999998877653 5667777776 444 344555 5 888998753
No 155
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=90.86 E-value=0.89 Score=39.34 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCcEEEEECCCCH-------HHHHHHHHHhCCCcceecEEEECCEEE--ecchhhHh
Q 044679 206 RVRSIFEVNRVVTDERDVSLHG-------QFLNELKDLFGGETVTVPRVFIKGRYV--GGVDELTE 262 (333)
Q Consensus 206 ~aK~lL~~~gV~yeErDVs~d~-------e~reELkels~G~~~TvPqVFVdG~~I--GG~Del~e 262 (333)
.+...|+++||.+..+++++++ .+++.|... | ...+|.++|||+.+ |.|=...+
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~--G-~e~LPitlVdGeiv~~G~YPt~eE 93 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTE--G-AEALPITLVDGEIVKTGRYPTNEE 93 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH----GGG-SEEEETTEEEEESS---HHH
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHc--C-cccCCEEEECCEEEEecCCCCHHH
Confidence 5566788999999999998875 334444443 5 88999999999965 77755443
No 156
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=90.60 E-value=0.54 Score=40.15 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=36.1
Q ss_pred EEEEEc-------ccCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHH---HHHHHHhCCCcc-eecEEEE
Q 044679 187 VVIYTT-------SLRGVRRTYEDCNRVRSIFEV----N--RVVTDERDVSLHGQFL---NELKDLFGGETV-TVPRVFI 249 (333)
Q Consensus 187 VVIYTt-------SlrgiR~tCp~C~~aK~lL~~----~--gV~yeErDVs~d~e~r---eELkels~G~~~-TvPqVFV 249 (333)
||.|+. +| |+.|+.+.-+|+. + ++.|..+|++..+..+ .++.... + .. .+|.+++
T Consensus 25 vV~F~A~~~~~~~~W------C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~-~-I~~~iPT~~~ 96 (119)
T cd02952 25 FILFYGDKDPDGQSW------CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDP-K-LTTGVPTLLR 96 (119)
T ss_pred EEEEEccCCCCCCCC------CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhcc-C-cccCCCEEEE
Confidence 566777 68 9999987766543 3 4789999997644221 3444444 4 55 8999754
No 157
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=90.43 E-value=0.47 Score=39.67 Aligned_cols=59 Identities=10% Similarity=0.195 Sum_probs=37.3
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHHhCC-CcceecEEE-E--CCEEEe
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV------NRVVTDERDVSLHGQFLNELKDLFGG-ETVTVPRVF-I--KGRYVG 255 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~------~gV~yeErDVs~d~e~reELkels~G-~~~TvPqVF-V--dG~~IG 255 (333)
+|.|+++| |++|+.+...+.. ....|..+|++.+.+... +.. + ....+|.++ + +|+.++
T Consensus 23 lV~F~a~W------C~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~---~~~-~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTW------CGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD---EEF-SPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCc------CHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh---hhc-ccCCCccceEEEECCCCCCch
Confidence 56677887 9999999887776 345688888886643221 122 2 023489874 4 565544
No 158
>PRK14288 chaperone protein DnaJ; Provisional
Probab=90.36 E-value=0.28 Score=49.09 Aligned_cols=46 Identities=37% Similarity=0.909 Sum_probs=21.5
Q ss_pred cccCCCCcce-----eeCCCCCCcceeeecCC---ccccCCCcCcCCc---ccCCCC
Q 044679 286 ACEGCGGARF-----VPCFDCGGSCKVVLATG---DKQRCGVCNENGL---VHCPAC 331 (333)
Q Consensus 286 ~C~~CgG~rf-----vpC~~C~GS~K~~~~~~---~~~rC~~CNENGL---~rCp~C 331 (333)
.|..|.|.+. ..|..|+|+-.++...+ ....|+.|+-.|. .+|+.|
T Consensus 142 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 198 (369)
T PRK14288 142 VCESCDGTGAKDKALETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQAC 198 (369)
T ss_pred cCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccC
Confidence 4555555442 34555555544433322 1235555555552 235555
No 159
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=90.24 E-value=0.82 Score=35.51 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=37.6
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC---------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN---------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRY 253 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~---------gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~ 253 (333)
-+|.|+++| |+.|+.....|+.. .+.+-.+|.+.+.. +.+.. + ...+|.++ -+|+.
T Consensus 19 ~lv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~-v~~~Pt~~~~~~g~~ 85 (102)
T cd03005 19 HFVKFFAPW------CGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEF-Q-VRGYPTLLLFKDGEK 85 (102)
T ss_pred EEEEEECCC------CHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhc-C-CCcCCEEEEEeCCCe
Confidence 467777887 99999877666432 46677888776654 33344 5 78899864 36653
No 160
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=90.20 E-value=0.73 Score=42.16 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=39.3
Q ss_pred cEEE-EEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEEecc
Q 044679 186 GVVI-YTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYVGGV 257 (333)
Q Consensus 186 kVVI-YTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~IGG~ 257 (333)
.||| |+.+| |+.|+.+..+|+.+ .+.|..+|++.. ...+ + ...+|.|+ -+|+.++-+
T Consensus 104 ~VVV~Fya~w------c~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~-~-i~~lPTlliyk~G~~v~~i 168 (192)
T cd02988 104 WVVVHLYKDG------IPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNY-P-DKNLPTILVYRNGDIVKQF 168 (192)
T ss_pred EEEEEEECCC------CchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhC-C-CCCCCEEEEEECCEEEEEE
Confidence 4544 66676 99999998888764 477888887531 2345 5 78899974 588765433
No 161
>PRK14298 chaperone protein DnaJ; Provisional
Probab=90.14 E-value=0.26 Score=49.50 Aligned_cols=49 Identities=35% Similarity=0.891 Sum_probs=31.9
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++..- + ....|+.|+-.|-+ +|+.|.
T Consensus 141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 205 (377)
T PRK14298 141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCS 205 (377)
T ss_pred eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCC
Confidence 456777777665 5688888886554321 1 24678888877743 677774
No 162
>PRK14286 chaperone protein DnaJ; Provisional
Probab=90.05 E-value=0.27 Score=49.21 Aligned_cols=49 Identities=31% Similarity=0.784 Sum_probs=28.2
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecCC---ccccCCCcCcCCc---ccCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLATG---DKQRCGVCNENGL---VHCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~~---~~~rC~~CNENGL---~rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++...+ ....|+.|+--|. .+|+.|.
T Consensus 150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (372)
T PRK14286 150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCG 210 (372)
T ss_pred cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCC
Confidence 345777766654 56777777755543322 2346777766663 3566663
No 163
>PRK14294 chaperone protein DnaJ; Provisional
Probab=89.92 E-value=0.31 Score=48.60 Aligned_cols=49 Identities=35% Similarity=0.816 Sum_probs=29.5
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecCC---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLATG---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++...+ ....|+.|+-.|-+ +|+.|.
T Consensus 144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (366)
T PRK14294 144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCH 204 (366)
T ss_pred cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCC
Confidence 345777766654 46777777765543222 24577777777754 566664
No 164
>PRK14301 chaperone protein DnaJ; Provisional
Probab=89.89 E-value=0.28 Score=49.15 Aligned_cols=48 Identities=40% Similarity=0.918 Sum_probs=26.3
Q ss_pred ccccCCCCcce------eeCCCCCCcceeeecCC---ccccCCCcCcCCcc---cCCCCC
Q 044679 285 QACEGCGGARF------VPCFDCGGSCKVVLATG---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 285 ~~C~~CgG~rf------vpC~~C~GS~K~~~~~~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
..|..|.|.+. ..|..|+|+-.++...+ ....|+.|+-.|-+ +|+.|.
T Consensus 145 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (373)
T PRK14301 145 VTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCK 204 (373)
T ss_pred ccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCC
Confidence 45666666553 45666666655443322 24566666666633 566663
No 165
>PRK14291 chaperone protein DnaJ; Provisional
Probab=89.88 E-value=0.31 Score=48.89 Aligned_cols=49 Identities=35% Similarity=0.832 Sum_probs=34.3
Q ss_pred CccccCCCCcc------eeeCCCCCCcceeeecCC---ccccCCCcCcCCcc--cCCCCC
Q 044679 284 RQACEGCGGAR------FVPCFDCGGSCKVVLATG---DKQRCGVCNENGLV--HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~r------fvpC~~C~GS~K~~~~~~---~~~rC~~CNENGL~--rCp~C~ 332 (333)
...|..|.|.+ ...|..|+|+-.++...+ ....|+.|+--|.+ .|+.|.
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~C~~C~ 215 (382)
T PRK14291 156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVLREPCSKCN 215 (382)
T ss_pred eccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceEEccCCCCCC
Confidence 45688888766 467888888876655433 34678888888844 577774
No 166
>PRK14295 chaperone protein DnaJ; Provisional
Probab=89.81 E-value=0.27 Score=49.59 Aligned_cols=49 Identities=29% Similarity=0.745 Sum_probs=29.3
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecCC---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLATG---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++...+ ...+|+.|+-.|.+ +|+.|.
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCK 226 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCC
Confidence 345666666553 55777777765544333 24567777777754 466664
No 167
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.72 E-value=0.61 Score=46.04 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=46.8
Q ss_pred CCcEEEE-EcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEE
Q 044679 184 SDGVVIY-TTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYV 254 (333)
Q Consensus 184 ~~kVVIY-TtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~I 254 (333)
..+|+|| ..+| |+.|++..-+|++. ++.+-.+|++.++.+... . | ..++|.| |++|+.|
T Consensus 43 ~~PVlV~fWap~------~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaq----f-g-iqsIPtV~af~dGqpV 110 (304)
T COG3118 43 EVPVLVDFWAPW------CGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQ----F-G-VQSIPTVYAFKDGQPV 110 (304)
T ss_pred CCCeEEEecCCC------CchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHH----h-C-cCcCCeEEEeeCCcCc
Confidence 3455555 4555 99999999999874 355678888888765443 4 6 8999997 7899988
Q ss_pred ecch
Q 044679 255 GGVD 258 (333)
Q Consensus 255 GG~D 258 (333)
-||-
T Consensus 111 dgF~ 114 (304)
T COG3118 111 DGFQ 114 (304)
T ss_pred cccC
Confidence 7774
No 168
>PRK14287 chaperone protein DnaJ; Provisional
Probab=89.65 E-value=0.3 Score=48.85 Aligned_cols=49 Identities=29% Similarity=0.844 Sum_probs=35.4
Q ss_pred CccccCCCCcc------eeeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGAR------FVPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~r------fvpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+ -..|..|+|+-.++... + ....|+.|+-.|.+ +|+.|.
T Consensus 138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 202 (371)
T PRK14287 138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCG 202 (371)
T ss_pred eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCC
Confidence 45788888766 46799999997665432 1 24689999999965 688885
No 169
>PRK14289 chaperone protein DnaJ; Provisional
Probab=89.60 E-value=0.28 Score=49.15 Aligned_cols=49 Identities=31% Similarity=0.747 Sum_probs=34.3
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-+++..- + ....|+.|+-.|-+ +|+.|.
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 218 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCG 218 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCC
Confidence 456888877664 6789999987665432 1 24688888888854 788884
No 170
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=89.48 E-value=1.8 Score=37.41 Aligned_cols=80 Identities=25% Similarity=0.521 Sum_probs=49.3
Q ss_pred CCCChhHH-----------HHHHHHHhCCCc--EEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 198 RRTYEDCN-----------RVRSIFEVNRVV--TDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 198 R~tCp~C~-----------~aK~lL~~~gV~--yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
..||+.|. .++..|..+||. |+++.++.....++ ....|.|.|+|+-
T Consensus 12 g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~---------~~~S~~I~inG~p----------- 71 (120)
T PF10865_consen 12 GKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQ---------PLESPTIRINGRP----------- 71 (120)
T ss_pred CCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhc---------ccCCCeeeECCEe-----------
Confidence 45788886 455567778888 55666554322111 3456999999985
Q ss_pred HhCcHHHHHHhhhhhcccCCccccCCCCcceeeCCCCCC-cceeeecCC
Q 044679 265 ESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGG-SCKVVLATG 312 (333)
Q Consensus 265 EsGeL~~lLk~~~~~~g~~~~~C~~CgG~rfvpC~~C~G-S~K~~~~~~ 312 (333)
|+++| ++.. ....|..|| |..|.+ .||++.-++
T Consensus 72 ----iE~~l-~~~v----~~s~C~~c~------~~~g~~~~CRt~~~~g 105 (120)
T PF10865_consen 72 ----IEDLL-GAEV----GESPCESCG------CSCGGDVDCRTLEYEG 105 (120)
T ss_pred ----hhHhh-CCcc----ccCcccccc------cccCCCccceeEEECC
Confidence 55666 3333 356787777 455544 477765443
No 171
>PRK14282 chaperone protein DnaJ; Provisional
Probab=89.43 E-value=0.31 Score=48.61 Aligned_cols=49 Identities=29% Similarity=0.855 Sum_probs=32.0
Q ss_pred CccccCCCCcc------eeeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGAR------FVPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~r------fvpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+ ...|..|+|+-.++..- + ....|+.|+-.|.+ +|+.|.
T Consensus 152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 216 (369)
T PRK14282 152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECG 216 (369)
T ss_pred cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCC
Confidence 34677777765 35688888886655321 1 24578888888854 577774
No 172
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=89.24 E-value=1.4 Score=34.65 Aligned_cols=54 Identities=11% Similarity=0.184 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 202 EDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 202 p~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
+.|.++..+|+..|++|+.+++..... . .....+|.|-+||+.|++...+..+.
T Consensus 18 ~~~~kv~~~L~elglpye~~~~~~~~~-------~--~P~GkVP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 18 ASCLAVQTFLKMCNLPFNVRCRANAEF-------M--SPSGKVPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCHHHHHHHHHHcCCCcEEEecCCccc-------c--CCCCcccEEEECCEEEeCHHHHHHHH
Confidence 489999999999999999887543111 1 11357999999999999988776654
No 173
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=88.91 E-value=0.37 Score=47.59 Aligned_cols=49 Identities=33% Similarity=0.862 Sum_probs=31.4
Q ss_pred CccccCCCCcc------eeeCCCCCCcceeeecCC-------ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGAR------FVPCFDCGGSCKVVLATG-------DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~r------fvpC~~C~GS~K~~~~~~-------~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+ ...|..|+|+-.++...+ ....|+.|+-.|.+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (354)
T TIGR02349 143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCK 207 (354)
T ss_pred CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCC
Confidence 45677777766 456888888765553321 13578888777754 577774
No 174
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=88.90 E-value=1.1 Score=33.59 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=23.1
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECC
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVS 224 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs 224 (333)
|++|+... ||+|..+...|+.. ++.+..+.+.
T Consensus 1 i~~f~d~~------Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPL------CPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCC------CHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 45677665 99999998888763 5667766653
No 175
>PRK14293 chaperone protein DnaJ; Provisional
Probab=88.89 E-value=0.35 Score=48.38 Aligned_cols=49 Identities=41% Similarity=0.890 Sum_probs=33.2
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++..- + ...+|+.|+-.|-+ +|..|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (374)
T PRK14293 143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACG 207 (374)
T ss_pred cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCC
Confidence 456777777654 4688888887665332 1 24688888888866 677774
No 176
>PRK14280 chaperone protein DnaJ; Provisional
Probab=88.86 E-value=0.38 Score=48.18 Aligned_cols=49 Identities=35% Similarity=0.902 Sum_probs=30.1
Q ss_pred CccccCCCCcc------eeeCCCCCCcceeeecCC-------ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGAR------FVPCFDCGGSCKVVLATG-------DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~r------fvpC~~C~GS~K~~~~~~-------~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+ ...|..|+|+-.++.... ....|+.|+-.|.+ +|+.|.
T Consensus 143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 207 (376)
T PRK14280 143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCH 207 (376)
T ss_pred eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCC
Confidence 44677777765 356777777765543221 24577777777753 577774
No 177
>PRK14290 chaperone protein DnaJ; Provisional
Probab=88.73 E-value=0.39 Score=47.83 Aligned_cols=49 Identities=27% Similarity=0.776 Sum_probs=30.7
Q ss_pred CccccCCCCcce-----eeCCCCCCcceeeecC--C-----ccccCCCcCcCC---cccCCCCC
Q 044679 284 RQACEGCGGARF-----VPCFDCGGSCKVVLAT--G-----DKQRCGVCNENG---LVHCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf-----vpC~~C~GS~K~~~~~--~-----~~~rC~~CNENG---L~rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.+...- + ...+|+.|+-.| ..+|+.|.
T Consensus 149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (365)
T PRK14290 149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCN 212 (365)
T ss_pred cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCC
Confidence 345777777664 5688888886544321 1 125788888777 44677774
No 178
>PRK14279 chaperone protein DnaJ; Provisional
Probab=88.72 E-value=0.34 Score=48.85 Aligned_cols=48 Identities=27% Similarity=0.666 Sum_probs=27.1
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecCC---ccccCCCcCcCCcc---cCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLATG---DKQRCGVCNENGLV---HCPAC 331 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~~---~~~rC~~CNENGL~---rCp~C 331 (333)
...|..|.|.+. ..|..|+|+-.++...+ ....|+.|+-.|.+ +|+.|
T Consensus 173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C 232 (392)
T PRK14279 173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEEC 232 (392)
T ss_pred cccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCC
Confidence 345666666654 45777777755543322 24566666666633 45555
No 179
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=88.36 E-value=1.5 Score=37.53 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=39.5
Q ss_pred cEEE-EEcccCCCCCCChhHHHHHH-HHHh--------CCCcEEEEECCCCHHHHHHHHH----HhCCCcceecEEE-E-
Q 044679 186 GVVI-YTTSLRGVRRTYEDCNRVRS-IFEV--------NRVVTDERDVSLHGQFLNELKD----LFGGETVTVPRVF-I- 249 (333)
Q Consensus 186 kVVI-YTtSlrgiR~tCp~C~~aK~-lL~~--------~gV~yeErDVs~d~e~reELke----ls~G~~~TvPqVF-V- 249 (333)
.|+| |+++| |++|+.+.. .|.. .++-+..+|++..+++.+.+.+ +. | ...+|.+. +
T Consensus 17 pVll~f~a~W------C~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~-~-~~G~Pt~vfl~ 88 (124)
T cd02955 17 PIFLSIGYST------CHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMT-G-QGGWPLNVFLT 88 (124)
T ss_pred eEEEEEccCC------CHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhc-C-CCCCCEEEEEC
Confidence 3555 55555 999998864 3332 2455677888777666544333 34 4 67788874 4
Q ss_pred -CCEEEecc
Q 044679 250 -KGRYVGGV 257 (333)
Q Consensus 250 -dG~~IGG~ 257 (333)
+|+.|-++
T Consensus 89 ~~G~~~~~~ 97 (124)
T cd02955 89 PDLKPFFGG 97 (124)
T ss_pred CCCCEEeee
Confidence 67777433
No 180
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=88.35 E-value=2.1 Score=40.34 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=40.2
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYV 254 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~I 254 (333)
-+|.|+++| |+.|+++...++.. .+.+..+|++.+.+ +.+.+ + ...+|.++ -+|+.+
T Consensus 55 vlV~FyApW------C~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~----l~~~~-~-I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPW------CSHCRKMAPAWERLAKALKGQVNVADLDATRALN----LAKRF-A-IKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCC------ChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH----HHHHc-C-CCcCCEEEEEECCEEE
Confidence 467788887 99999998887653 25577777776653 44555 5 78889874 477754
No 181
>PRK14297 chaperone protein DnaJ; Provisional
Probab=88.27 E-value=0.4 Score=48.02 Aligned_cols=49 Identities=31% Similarity=0.835 Sum_probs=32.0
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++... + ...+|+.|+-.|.+ +|+.|.
T Consensus 148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 212 (380)
T PRK14297 148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCH 212 (380)
T ss_pred eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCC
Confidence 456777777664 5688888886554321 1 24678888877754 577774
No 182
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=88.14 E-value=1.7 Score=36.40 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=40.3
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGR 252 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~ 252 (333)
--+|.|+.+| |++|+.+.-.|+.. .+.+-.+|++.+..+ ..+.+ + ..++|+| |.+|+
T Consensus 31 ~vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~-~-I~~~PTl~lf~~g~ 95 (113)
T cd03006 31 VSLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQK-H-FFYFPVIHLYYRSR 95 (113)
T ss_pred EEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhc-C-CcccCEEEEEECCc
Confidence 4578899998 99999998887764 266788898876643 22234 4 6778876 56765
No 183
>PRK14292 chaperone protein DnaJ; Provisional
Probab=88.11 E-value=0.45 Score=47.46 Aligned_cols=49 Identities=33% Similarity=0.778 Sum_probs=33.5
Q ss_pred CccccCCCCcc-------eeeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGAR-------FVPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~r-------fvpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+ ...|..|+|+-.+...- + ....|+.|+-.|.. +|+.|.
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 204 (371)
T PRK14292 139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCR 204 (371)
T ss_pred eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCC
Confidence 45688888766 46688888886554321 1 23578888888855 688884
No 184
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=88.09 E-value=2.5 Score=35.73 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=47.6
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE--CCEEE
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI--KGRYV 254 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV--dG~~I 254 (333)
...+|+||--|+ +|+-+..|.+-|++. ++++.++||-.+..+=.++.+.+ |-.-.-||+++ +|+.+
T Consensus 18 ~~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~-~V~HeSPQ~ili~~g~~v 91 (105)
T PF11009_consen 18 KEKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDF-GVKHESPQVILIKNGKVV 91 (105)
T ss_dssp --SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHH-T----SSEEEEEETTEEE
T ss_pred ccCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHh-CCCcCCCcEEEEECCEEE
Confidence 457799999997 599999988877753 39999999999999999999999 75667799865 88866
Q ss_pred e
Q 044679 255 G 255 (333)
Q Consensus 255 G 255 (333)
-
T Consensus 92 ~ 92 (105)
T PF11009_consen 92 W 92 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 185
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=87.63 E-value=0.33 Score=41.76 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=34.6
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHH----HHhC-CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE---CCEEE
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSI----FEVN-RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI---KGRYV 254 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~l----L~~~-gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV---dG~~I 254 (333)
..-.|+|++-+| |++|.+..=+ ++.. ++++..+..+.+.++.+.+.. . | .+.+|.+++ +|+.+
T Consensus 41 ~~~~ilvi~e~W------CgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~-g-~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 41 KPYNILVITETW------CGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-N-G-GRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp S-EEEEEE--TT-------HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT---S-S--SSEEEEE-TT--EE
T ss_pred CCcEEEEEECCC------chhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-C-C-CeecCEEEEEcCCCCEe
Confidence 445899999999 9999976544 4445 777777765555544333222 2 4 899999754 34555
Q ss_pred ec
Q 044679 255 GG 256 (333)
Q Consensus 255 GG 256 (333)
|-
T Consensus 112 g~ 113 (129)
T PF14595_consen 112 GR 113 (129)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 186
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=87.61 E-value=0.71 Score=35.14 Aligned_cols=38 Identities=34% Similarity=0.912 Sum_probs=27.1
Q ss_pred CCccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCC
Q 044679 283 GRQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENG 324 (333)
Q Consensus 283 ~~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENG 324 (333)
....|..|.|.+++ +|..|+|+-+++ . ..+|+.|+-+|
T Consensus 14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i-~---~~~C~~C~G~g 66 (66)
T PF00684_consen 14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII-E---KDPCKTCKGSG 66 (66)
T ss_dssp T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE--T---SSB-SSSTTSS
T ss_pred CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE-C---CCCCCCCCCcC
Confidence 56689999999876 799999999886 2 47899998665
No 187
>PRK14296 chaperone protein DnaJ; Provisional
Probab=87.52 E-value=0.48 Score=47.50 Aligned_cols=49 Identities=31% Similarity=0.810 Sum_probs=30.5
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecC--C-----ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLAT--G-----DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~--~-----~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++..- + ....|+.|+--|-+ +|+.|.
T Consensus 149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~ 213 (372)
T PRK14296 149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCK 213 (372)
T ss_pred eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCC
Confidence 346777777664 4588888886554321 1 23577777777754 477774
No 188
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=2.1 Score=35.77 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=38.6
Q ss_pred CcEEE-EEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCE
Q 044679 185 DGVVI-YTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGR 252 (333)
Q Consensus 185 ~kVVI-YTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~ 252 (333)
..||| |+.+| |+-|+.+.=+|+.+ .+.|-.+|++.. .++.... + ...+|.+. .+|+
T Consensus 22 kliVvdF~a~w------CgPCk~i~P~~~~La~~y~~v~Flkvdvde~----~~~~~~~-~-V~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 22 KLVVVDFYATW------CGPCKAIAPKFEKLAEKYPDVVFLKVDVDEL----EEVAKEF-N-VKAMPTFVFYKGGE 85 (106)
T ss_pred CeEEEEEECCC------CcchhhhhhHHHHHHHHCCCCEEEEEecccC----HhHHHhc-C-ceEeeEEEEEECCE
Confidence 34455 66666 99999999988875 466788999872 2333334 5 88999973 4665
No 189
>PRK14276 chaperone protein DnaJ; Provisional
Probab=87.47 E-value=0.51 Score=47.37 Aligned_cols=49 Identities=33% Similarity=0.807 Sum_probs=31.6
Q ss_pred CccccCCCCcce------eeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGARF------VPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf------vpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-.++..- + ....|+.|+-.|-+ +|+.|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (380)
T PRK14276 146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCH 210 (380)
T ss_pred cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCC
Confidence 456777877764 5688888886554321 1 24578888777744 577774
No 190
>PRK14278 chaperone protein DnaJ; Provisional
Probab=87.42 E-value=0.55 Score=47.14 Aligned_cols=49 Identities=33% Similarity=0.758 Sum_probs=27.7
Q ss_pred CccccCCCCcc------eeeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGAR------FVPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~r------fvpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+ ...|..|+|+-.++... + ....|+.|+-.|-+ +|+.|.
T Consensus 139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 203 (378)
T PRK14278 139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECA 203 (378)
T ss_pred eccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCC
Confidence 34566666655 34577777775543321 1 13467777766643 566664
No 191
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=87.14 E-value=1.9 Score=40.89 Aligned_cols=61 Identities=20% Similarity=0.219 Sum_probs=48.7
Q ss_pred CChhHHHHHHHHHhCCCcEE--EEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHHH
Q 044679 200 TYEDCNRVRSIFEVNRVVTD--ERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELNE 265 (333)
Q Consensus 200 tCp~C~~aK~lL~~~gV~ye--ErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~E 265 (333)
-|++|+++-..|..+++.|. .+|++.-+ ++|+.++ . ...+|.|-.||+.+-..+.+.+..+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~s-p-~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDIS-P-GGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhC-C-CCCCCeEEeCCceeccHHHHHHHHH
Confidence 59999999999999999855 56766655 4577777 4 6789999999999988877766544
No 192
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=87.14 E-value=1.7 Score=37.22 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=40.8
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcceecE--EEECCEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVN-----R-VVTDERDVSLHGQFLNELKDLFGGETVTVPR--VFIKGRYV 254 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~-----g-V~yeErDVs~d~e~reELkels~G~~~TvPq--VFVdG~~I 254 (333)
||-|+.+| |+.|+.+-.+|.++ + +.|-.+||+..+++.++ + + ....|. +|-+|+||
T Consensus 18 VVdF~a~W------C~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~----y-~-I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDE------DAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQY----F-D-ISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCC------ChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHh----c-C-ceeCcEEEEEECCcEE
Confidence 55577777 99999998888864 3 67889999988775544 3 3 444565 46689887
No 193
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=87.10 E-value=2.1 Score=38.35 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=40.0
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFV 249 (333)
+.||... .++|.+++-+|+.+||+|+.++|+.. .....++.++. - ...||.+..
T Consensus 2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iN-P-~gkVP~L~~ 57 (215)
T PRK13972 2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRIS-P-NNKIPAIVD 57 (215)
T ss_pred eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhC-c-CCCCCEEEe
Confidence 4678765 46899999999999999998877643 22235666665 2 678999986
No 194
>PRK10357 putative glutathione S-transferase; Provisional
Probab=87.09 E-value=1.2 Score=39.31 Aligned_cols=64 Identities=6% Similarity=-0.057 Sum_probs=44.2
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE-CCEEEecchhh
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI-KGRYVGGVDEL 260 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV-dG~~IGG~Del 260 (333)
.+|+... ++++++++-+|+.+||+|+.+.++.... ..++.++. . ...+|.+.. +|..|-....+
T Consensus 2 ~Ly~~~~------s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~n-P-~g~vP~L~~~~g~~l~eS~aI 66 (202)
T PRK10357 2 KLIGSYT------SPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYN-P-LGKVPALVTEEGECWFDSPII 66 (202)
T ss_pred eeecCCC------CchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcC-C-ccCCCeEEeCCCCeeecHHHH
Confidence 4677764 8999999999999999999988764211 12344444 3 778999985 56544443333
No 195
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=86.88 E-value=2 Score=34.21 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=34.0
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh----C---C--CcEEEEECCCCHHHHHHHHHHhCCCcceecEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV----N---R--VVTDERDVSLHGQFLNELKDLFGGETVTVPRVF 248 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~----~---g--V~yeErDVs~d~e~reELkels~G~~~TvPqVF 248 (333)
-+|.|.++| |+.|++....|+. + + +.+..+|++.... +.+.. + ..++|.++
T Consensus 18 vlv~f~a~w------C~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~-~-I~~~Pt~~ 77 (104)
T cd03000 18 WLVDFYAPW------CGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEF-G-VRGYPTIK 77 (104)
T ss_pred EEEEEECCC------CHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhc-C-CccccEEE
Confidence 366677777 9999977766643 2 3 5566777766554 33445 5 78899974
No 196
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=86.79 E-value=2.4 Score=37.46 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=38.4
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHHhCCCcc-eecEE-EE-CCE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----R-VVTDERDVSLHGQFLNELKDLFGGETV-TVPRV-FI-KGR 252 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----g-V~yeErDVs~d~e~reELkels~G~~~-TvPqV-FV-dG~ 252 (333)
-||-|+.+| |+.|+.+-.+|++. + +.|..+||+..+++.++ + + .. .+|.+ |. +|+
T Consensus 26 VVvdF~A~W------CgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~----y-~-I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 26 VVIRFGHDW------DETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTM----Y-E-LYDPCTVMFFFRNKH 89 (142)
T ss_pred EEEEEECCC------ChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHH----c-C-ccCCCcEEEEEECCe
Confidence 367788888 99999998888764 2 45689999988765444 4 4 44 44555 33 555
No 197
>PLN02395 glutathione S-transferase
Probab=86.69 E-value=1.9 Score=38.32 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=48.9
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
+.||.... ..+.+++-+|..+|++|+.+.|+.. .....++.+.. - ...||.+..+|..|.....+.+..
T Consensus 3 ~~ly~~~~-------~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~n-P-~g~vP~L~~~~~~l~ES~aI~~YL 73 (215)
T PLN02395 3 LKVYGPAF-------ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQ-P-FGVVPVIVDGDYKIFESRAIMRYY 73 (215)
T ss_pred EEEEcCCc-------CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhC-C-CCCCCEEEECCEEEEcHHHHHHHH
Confidence 67887543 3579999999999999998877542 12234566665 2 678999998887776666655543
No 198
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=86.62 E-value=1.5 Score=34.10 Aligned_cols=60 Identities=17% Similarity=0.344 Sum_probs=37.4
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHh--------CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEV--------NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYV 254 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~--------~gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~I 254 (333)
.-+|.|+.+| |++|+++...|.. .++.|-.+|++.+. -..+.... | ...+|.++ -+|+.+
T Consensus 19 ~~~v~f~a~w------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~-~-i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 19 HVLVMFYAPW------CGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE--HDALKEEY-N-VKGFPTFKYFENGKFV 88 (104)
T ss_pred CEEEEEECCC------CHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc--cHHHHHhC-C-CccccEEEEEeCCCee
Confidence 4477888887 9999988654432 23557777877621 12344445 5 67889874 356533
No 199
>PRK14296 chaperone protein DnaJ; Provisional
Probab=86.59 E-value=0.59 Score=46.84 Aligned_cols=38 Identities=32% Similarity=0.781 Sum_probs=30.6
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|+|.+.+ +|..|+|.-++. ...|+.|+-.|.+
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 218 (372)
T PRK14296 166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-----KNKCKNCKGKGKY 218 (372)
T ss_pred CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-----cccccCCCCceEE
Confidence 4579999999864 799999998884 3569999988865
No 200
>PRK14277 chaperone protein DnaJ; Provisional
Probab=86.46 E-value=0.59 Score=47.00 Aligned_cols=48 Identities=29% Similarity=0.764 Sum_probs=26.5
Q ss_pred ccccCCCCcc------eeeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 285 QACEGCGGAR------FVPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 285 ~~C~~CgG~r------fvpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
..|..|.|.+ ...|..|+|+-.++... + ....|+.|+-.|.+ +|+.|.
T Consensus 156 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~ 219 (386)
T PRK14277 156 EKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCG 219 (386)
T ss_pred ccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCC
Confidence 4566666544 35577777775443221 1 23467777666644 466664
No 201
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=86.38 E-value=3.8 Score=33.72 Aligned_cols=55 Identities=13% Similarity=0.174 Sum_probs=33.1
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh-------C--CCcEEEEECCCCHH-H-------------------HHHHHHHh
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV-------N--RVVTDERDVSLHGQ-F-------------------LNELKDLF 237 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~-------~--gV~yeErDVs~d~e-~-------------------reELkels 237 (333)
+|.|..+| |+.|++....|.. . ++.+..++++.+.+ + ...+.+.+
T Consensus 22 ll~Fwa~w------C~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (131)
T cd03009 22 GLYFSASW------CPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTF 95 (131)
T ss_pred EEEEECCC------ChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHc
Confidence 44455665 9999976666542 1 56666666665432 1 13444555
Q ss_pred CCCcceecEEEE
Q 044679 238 GGETVTVPRVFI 249 (333)
Q Consensus 238 ~G~~~TvPqVFV 249 (333)
| ...+|.+||
T Consensus 96 -~-v~~~P~~~l 105 (131)
T cd03009 96 -K-IEGIPTLII 105 (131)
T ss_pred -C-CCCCCEEEE
Confidence 5 778898865
No 202
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=1.5 Score=39.23 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=48.9
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHhCCCcceecEEEECCE-EEecchhhHh
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHG-QFLNELKDLFGGETVTVPRVFIKGR-YVGGVDELTE 262 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~-e~reELkels~G~~~TvPqVFVdG~-~IGG~Del~e 262 (333)
.+|.... +++|.+++-+|..+|++|+.+.|+... ....++..+. - ...||.+..+|- .|-....|.+
T Consensus 2 ~L~~~~~------sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~n-P-~gkVPvL~~~~~~~l~ES~AI~~ 70 (211)
T COG0625 2 KLYGSPT------SPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALN-P-LGKVPALVDDDGEVLTESGAILE 70 (211)
T ss_pred eeecCCC------CcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcC-C-CCCCCEEeeCCCCeeecHHHHHH
Confidence 4666664 599999999999999999999887764 4446676765 3 789999988764 4444444433
No 203
>PRK14285 chaperone protein DnaJ; Provisional
Probab=86.21 E-value=0.66 Score=46.35 Aligned_cols=39 Identities=28% Similarity=0.730 Sum_probs=31.2
Q ss_pred CccccCCCCccee-----------eCCCCCCcceeeecCCccccCCCcCcCCccc
Q 044679 284 RQACEGCGGARFV-----------PCFDCGGSCKVVLATGDKQRCGVCNENGLVH 327 (333)
Q Consensus 284 ~~~C~~CgG~rfv-----------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~r 327 (333)
...|..|.|.+.+ +|..|+|.-++. ...|..|+-.|.++
T Consensus 163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v~ 212 (365)
T PRK14285 163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-----SNPCKSCKGKGSLK 212 (365)
T ss_pred CccCCCccCceeEEecCceeEEeeecCCCCCccccc-----CCCCCCCCCCCEEe
Confidence 4579999998754 799999998874 35699999888763
No 204
>PRK14283 chaperone protein DnaJ; Provisional
Probab=86.07 E-value=0.64 Score=46.59 Aligned_cols=49 Identities=31% Similarity=0.819 Sum_probs=32.3
Q ss_pred CccccCCCCcc------eeeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 284 RQACEGCGGAR------FVPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~r------fvpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
...|..|.|.+ ...|..|+|+-.++... + ....|+.|+-.|.. +|..|.
T Consensus 146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 210 (378)
T PRK14283 146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCH 210 (378)
T ss_pred eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCC
Confidence 34577776654 45688888886665321 1 24678888888865 688775
No 205
>PRK14282 chaperone protein DnaJ; Provisional
Probab=86.05 E-value=0.71 Score=46.10 Aligned_cols=39 Identities=28% Similarity=0.740 Sum_probs=31.4
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCccc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLVH 327 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~r 327 (333)
...|..|.|.+.+ +|..|+|.-++. ...|..|+..|.+.
T Consensus 169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v~ 222 (369)
T PRK14282 169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-----GEYCHECGGSGRIR 222 (369)
T ss_pred CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-----CCCCCCCCCceeEE
Confidence 4579999999865 699999998873 35699999988654
No 206
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=86.04 E-value=1.7 Score=35.15 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=36.6
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhC-------CCcEEEEECCCC-HHHHHHHHHHhCCCcceecEEE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-------RVVTDERDVSLH-GQFLNELKDLFGGETVTVPRVF 248 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-------gV~yeErDVs~d-~e~reELkels~G~~~TvPqVF 248 (333)
.-+|.|.++| |+.|+++...|+.. ++.|-.+|++.+ ..+ ..+.. + ...+|.++
T Consensus 23 ~vlv~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~---~~~~~-~-v~~~Pti~ 83 (109)
T cd02993 23 STLVVLYAPW------CPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREF---AKEEL-Q-LKSFPTIL 83 (109)
T ss_pred CEEEEEECCC------CHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhh---HHhhc-C-CCcCCEEE
Confidence 4578888887 99999998877652 466777887762 322 22334 4 77899874
No 207
>PRK14279 chaperone protein DnaJ; Provisional
Probab=85.56 E-value=0.68 Score=46.76 Aligned_cols=40 Identities=28% Similarity=0.895 Sum_probs=32.2
Q ss_pred CCccccCCCCccee-----------eCCCCCCcceeeecCCccccCCCcCcCCccc
Q 044679 283 GRQACEGCGGARFV-----------PCFDCGGSCKVVLATGDKQRCGVCNENGLVH 327 (333)
Q Consensus 283 ~~~~C~~CgG~rfv-----------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~r 327 (333)
....|..|.|.+.+ +|..|+|.-++. ..+|..|+-.|.++
T Consensus 189 ~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-----~~~C~~C~G~g~v~ 239 (392)
T PRK14279 189 SPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-----EDPCEECKGTGVTT 239 (392)
T ss_pred CCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-----CCcCCCCCCCeEEE
Confidence 35679999999875 799999999874 25699999888763
No 208
>PRK14276 chaperone protein DnaJ; Provisional
Probab=85.12 E-value=0.69 Score=46.40 Aligned_cols=38 Identities=29% Similarity=0.722 Sum_probs=30.8
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|+|.+.+ +|..|+|.-++. ..+|..|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~~ 215 (380)
T PRK14276 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-----KEPCQTCHGTGHE 215 (380)
T ss_pred CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-----cCCCCCCCCceEE
Confidence 4579999998753 799999998874 3569999988875
No 209
>PRK10767 chaperone protein DnaJ; Provisional
Probab=85.10 E-value=0.78 Score=45.73 Aligned_cols=38 Identities=37% Similarity=0.824 Sum_probs=30.8
Q ss_pred CccccCCCCccee-----------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV-----------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv-----------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ +|..|+|.-+.. ..+|..|+-.|.+
T Consensus 159 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 207 (371)
T PRK10767 159 PKTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-----KDPCKKCHGQGRV 207 (371)
T ss_pred CccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-----CCCCCCCCCCceE
Confidence 4579999999876 599999998874 3569999988865
No 210
>PRK14280 chaperone protein DnaJ; Provisional
Probab=85.02 E-value=0.79 Score=45.94 Aligned_cols=38 Identities=34% Similarity=0.946 Sum_probs=30.4
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ +|..|+|.-++. ...|..|+-.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 212 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-----KEKCPTCHGKGKV 212 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-----cCCCCCCCCceEE
Confidence 4579999998754 799999998874 3569999988865
No 211
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=84.95 E-value=4.9 Score=33.44 Aligned_cols=60 Identities=13% Similarity=0.179 Sum_probs=34.9
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh-------C--CCcEEEEECCCCHH---------------------HHHHHHHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV-------N--RVVTDERDVSLHGQ---------------------FLNELKDL 236 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~-------~--gV~yeErDVs~d~e---------------------~reELkel 236 (333)
+|.|..+| |+.|+.....|+. . ++.+..++++.+.+ ....+.+.
T Consensus 21 ll~F~atw------C~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 21 GLYFSASW------CPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred EEEEECCC------CchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 34455665 9999986655532 2 46666666665431 12344444
Q ss_pred hCCCcceecEEE-EC--CEEE
Q 044679 237 FGGETVTVPRVF-IK--GRYV 254 (333)
Q Consensus 237 s~G~~~TvPqVF-Vd--G~~I 254 (333)
. | ...+|.++ |+ |+.+
T Consensus 95 ~-~-v~~iPt~~lid~~G~iv 113 (132)
T cd02964 95 F-K-VEGIPTLVVLKPDGDVV 113 (132)
T ss_pred c-C-CCCCCEEEEECCCCCEE
Confidence 5 4 67889886 54 5444
No 212
>PRK14301 chaperone protein DnaJ; Provisional
Probab=84.87 E-value=0.71 Score=46.25 Aligned_cols=38 Identities=37% Similarity=0.948 Sum_probs=30.4
Q ss_pred CccccCCCCccee-----------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV-----------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv-----------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ +|..|+|.-++. ...|+.|+-.|.+
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 209 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-----THPCPKCKGSGIV 209 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-----CCCCCCCCCCcee
Confidence 4579999998764 799999998874 2569999988765
No 213
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=84.85 E-value=2.2 Score=32.96 Aligned_cols=52 Identities=19% Similarity=0.351 Sum_probs=34.9
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVN--------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~--------gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
.-+|.|.++| |+.|+.+...|+.. .+.+..+|.+.+ ++.... + ...+|.+++
T Consensus 20 ~~~v~f~~~~------C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~-~-~~~~Pt~~~ 79 (104)
T cd02995 20 DVLVEFYAPW------CGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEF-V-VDGFPTILF 79 (104)
T ss_pred cEEEEEECCC------CHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhc-c-CCCCCEEEE
Confidence 4467788887 99999887777542 356677777654 233334 4 578998754
No 214
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=84.57 E-value=3.4 Score=37.00 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=53.9
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCC---CcceecEEEECCEEEecc---
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGG---ETVTVPRVFIKGRYVGGV--- 257 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G---~~~TvPqVFVdG~~IGG~--- 257 (333)
.-++++|..+. |.=|..-.+.|+.+|+++..+..+.-. .|++++ | ...+-=+..|+|.||=|-
T Consensus 25 ~~~~~vyksPn------CGCC~~w~~~mk~~Gf~Vk~~~~~d~~----alK~~~-gIp~e~~SCHT~VI~Gy~vEGHVPa 93 (149)
T COG3019 25 ATEMVVYKSPN------CGCCDEWAQHMKANGFEVKVVETDDFL----ALKRRL-GIPYEMQSCHTAVINGYYVEGHVPA 93 (149)
T ss_pred eeeEEEEeCCC------CccHHHHHHHHHhCCcEEEEeecCcHH----HHHHhc-CCChhhccccEEEEcCEEEeccCCH
Confidence 35689999886 889999999999999998888765433 455555 3 134556789999999885
Q ss_pred hhhHhHHHhCc
Q 044679 258 DELTELNESGK 268 (333)
Q Consensus 258 Del~eL~EsGe 268 (333)
+++.+|.+++.
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 55555554444
No 215
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=84.55 E-value=4.3 Score=31.57 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHhCCCcEEEEECCCCH-------HHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 202 EDCNRVRSIFEVNRVVTDERDVSLHG-------QFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 202 p~C~~aK~lL~~~gV~yeErDVs~d~-------e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
+.|.+++.+|...||+|+.+.|+... +++....+.. -...+||.+..||..+.-...+..
T Consensus 10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~-~P~g~vP~L~~~g~~l~ES~AIl~ 76 (82)
T cd03075 10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLG-LDFPNLPYYIDGDVKLTQSNAILR 76 (82)
T ss_pred cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcC-CcCCCCCEEEECCEEEeehHHHHH
Confidence 47889999999999999988776432 2221111111 025689999988876655444443
No 216
>PRK14281 chaperone protein DnaJ; Provisional
Probab=84.51 E-value=0.83 Score=46.16 Aligned_cols=48 Identities=38% Similarity=0.841 Sum_probs=25.4
Q ss_pred ccccCCCCcce-----eeCCCCCCcceeeecC----C---ccccCCCcCcCCcc---cCCCCC
Q 044679 285 QACEGCGGARF-----VPCFDCGGSCKVVLAT----G---DKQRCGVCNENGLV---HCPACS 332 (333)
Q Consensus 285 ~~C~~CgG~rf-----vpC~~C~GS~K~~~~~----~---~~~rC~~CNENGL~---rCp~C~ 332 (333)
..|..|.|.+. ..|..|+|+-.+.... + ....|+.|+-.|.+ +|+.|.
T Consensus 164 ~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~ 226 (397)
T PRK14281 164 VPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACY 226 (397)
T ss_pred ecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCC
Confidence 34666655543 3466777665443221 1 13466666666643 566663
No 217
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=84.40 E-value=2.7 Score=38.55 Aligned_cols=56 Identities=14% Similarity=0.320 Sum_probs=38.5
Q ss_pred EEEEEcccCCCCCCChhHHHH----HHHHHhCCCcEEEEECCCCH-----HH----HHHHHHHhCCC-cceecEEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRV----RSIFEVNRVVTDERDVSLHG-----QF----LNELKDLFGGE-TVTVPRVFI 249 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~a----K~lL~~~gV~yeErDVs~d~-----e~----reELkels~G~-~~TvPqVFV 249 (333)
||+|..+| |++|++. +++.+++|+.+.-++++.+. -+ ...+.+.+ |. ...+|..|+
T Consensus 73 lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~-g~~~~~iPttfL 142 (181)
T PRK13728 73 VVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFF-PNIPVATPTTFL 142 (181)
T ss_pred EEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHh-CCCCCCCCeEEE
Confidence 88899998 9999987 66667789888777765331 11 13355555 41 258999885
No 218
>PRK14297 chaperone protein DnaJ; Provisional
Probab=84.30 E-value=0.93 Score=45.45 Aligned_cols=38 Identities=39% Similarity=0.993 Sum_probs=30.6
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ +|..|+|..++. ...|..|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 217 (380)
T PRK14297 165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-----EDPCNKCHGKGKV 217 (380)
T ss_pred CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-----CCCCCCCCCCeEE
Confidence 4579999999765 699999998774 2569999988865
No 219
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=84.25 E-value=0.89 Score=46.54 Aligned_cols=49 Identities=33% Similarity=0.728 Sum_probs=28.7
Q ss_pred CccccCCCCcce-----eeCCCCCCcceeee-cC-C-----ccccCCCcCcCCcc-----cCCCCC
Q 044679 284 RQACEGCGGARF-----VPCFDCGGSCKVVL-AT-G-----DKQRCGVCNENGLV-----HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf-----vpC~~C~GS~K~~~-~~-~-----~~~rC~~CNENGL~-----rCp~C~ 332 (333)
...|..|.|.+. ..|..|+|+-..+. .. + ....|+.|+-.|-+ +|+.|.
T Consensus 150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~ 215 (421)
T PTZ00037 150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCS 215 (421)
T ss_pred cccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCC
Confidence 345666666553 46777877754322 11 1 23467777777754 477774
No 220
>PRK14284 chaperone protein DnaJ; Provisional
Probab=84.20 E-value=0.87 Score=45.88 Aligned_cols=39 Identities=33% Similarity=0.937 Sum_probs=31.6
Q ss_pred CCccccCCCCcce-----------eeCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 283 GRQACEGCGGARF-----------VPCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 283 ~~~~C~~CgG~rf-----------vpC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
....|..|+|.+. .+|..|+|.-++. ...|..|+-.|.+
T Consensus 174 ~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 223 (391)
T PRK14284 174 GIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-----TDPCSVCRGQGRI 223 (391)
T ss_pred CCeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-----CCcCCCCCCccee
Confidence 3567999999987 5899999998773 2569999988875
No 221
>PRK14300 chaperone protein DnaJ; Provisional
Probab=84.09 E-value=0.78 Score=45.91 Aligned_cols=38 Identities=26% Similarity=0.782 Sum_probs=29.7
Q ss_pred CccccCCCCccee-----------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV-----------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv-----------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+++ +|..|+|.-+.. ..+|..|+-.|.+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 210 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-----KNPCKKCHGMGRY 210 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-----CCCCCCCCCceEE
Confidence 4579999999865 699999988774 3569999888765
No 222
>PRK14288 chaperone protein DnaJ; Provisional
Probab=84.03 E-value=0.92 Score=45.40 Aligned_cols=38 Identities=29% Similarity=0.770 Sum_probs=31.1
Q ss_pred CccccCCCCccee-----------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV-----------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv-----------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|+|.+.+ +|..|+|.-++. ...|..|+-.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 204 (369)
T PRK14288 156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----KTPCQACKGKTYI 204 (369)
T ss_pred CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----cccCccCCCcceE
Confidence 4679999999965 699999998874 2559999988865
No 223
>PRK14277 chaperone protein DnaJ; Provisional
Probab=84.02 E-value=0.86 Score=45.82 Aligned_cols=38 Identities=29% Similarity=0.720 Sum_probs=30.8
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ +|..|+|.-+... .+|..|+-.|.+
T Consensus 172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v 224 (386)
T PRK14277 172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIIT-----DPCNKCGGTGRI 224 (386)
T ss_pred CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeecc-----CCCCCCCCCcEE
Confidence 4579999999754 6999999988842 469999998875
No 224
>PRK14286 chaperone protein DnaJ; Provisional
Probab=83.66 E-value=0.88 Score=45.58 Aligned_cols=39 Identities=31% Similarity=0.813 Sum_probs=31.4
Q ss_pred CccccCCCCccee-----------eCCCCCCcceeeecCCccccCCCcCcCCccc
Q 044679 284 RQACEGCGGARFV-----------PCFDCGGSCKVVLATGDKQRCGVCNENGLVH 327 (333)
Q Consensus 284 ~~~C~~CgG~rfv-----------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~r 327 (333)
...|..|.|.+.+ +|..|+|.-++.. .+|..|+-.|.++
T Consensus 167 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~~~ 216 (372)
T PRK14286 167 PTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVIS-----NPCKTCGGQGLQE 216 (372)
T ss_pred CccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEec-----ccCCCCCCCcEEe
Confidence 4679999999865 7999999988842 4699999888764
No 225
>PRK14298 chaperone protein DnaJ; Provisional
Probab=83.60 E-value=1.1 Score=45.16 Aligned_cols=38 Identities=37% Similarity=0.878 Sum_probs=30.5
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ +|..|+|.-+.. ..+|..|+-.|.+
T Consensus 158 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 210 (377)
T PRK14298 158 PKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-----ESPCPVCSGTGKV 210 (377)
T ss_pred CCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-----CCCCCCCCCccEE
Confidence 4679999999854 799999998764 3569999988865
No 226
>PRK14278 chaperone protein DnaJ; Provisional
Probab=83.56 E-value=0.89 Score=45.64 Aligned_cols=38 Identities=34% Similarity=0.806 Sum_probs=30.4
Q ss_pred CccccCCCCcce---------------eeCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARF---------------VPCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rf---------------vpC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+. .+|..|+|.-++.. .+|+.|+-.|.+
T Consensus 156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v 208 (378)
T PRK14278 156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIP-----DPCHECAGDGRV 208 (378)
T ss_pred ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeC-----CCCCCCCCceeE
Confidence 457999999874 47999999988742 469999988875
No 227
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=83.50 E-value=1.1 Score=49.81 Aligned_cols=54 Identities=28% Similarity=0.524 Sum_probs=36.0
Q ss_pred EEEecchhhHhHHHhCcHHHHHHhhhhhc---ccCCccccCCCCcce------------eeCCCCCCcce
Q 044679 252 RYVGGVDELTELNESGKLGRMLRSARVEM---GIGRQACEGCGGARF------------VPCFDCGGSCK 306 (333)
Q Consensus 252 ~~IGG~Del~eL~EsGeL~~lLk~~~~~~---g~~~~~C~~CgG~rf------------vpC~~C~GS~K 306 (333)
.|.|-||++++|+..-...+. .++...+ ...++.|+.|.|.|+ |+|..|||.+.
T Consensus 696 TYtg~Fd~IR~lFA~tpeAK~-rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 696 TYTGVFDDIRELFAGTPEAKA-RGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred chhcchHHHHHHHhcChHHHH-cCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 477788998888764333222 2222211 125789999999986 78999999864
No 228
>PRK14294 chaperone protein DnaJ; Provisional
Probab=83.09 E-value=1 Score=45.00 Aligned_cols=38 Identities=37% Similarity=0.830 Sum_probs=29.9
Q ss_pred CccccCCCCccee-----------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV-----------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv-----------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ +|..|+|..+.. ...|..|+-.|.+
T Consensus 161 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 209 (366)
T PRK14294 161 PTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-----VSPCKTCHGQGRV 209 (366)
T ss_pred cccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-----CcCCCCCCCceEe
Confidence 4579999998764 699999998874 3569999988765
No 229
>PF13728 TraF: F plasmid transfer operon protein
Probab=82.91 E-value=3.7 Score=38.22 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=40.2
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHH----hCCCcEEEEECCCC--H---HH--HHHHHHHhCCCcceecEEEE
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFE----VNRVVTDERDVSLH--G---QF--LNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~----~~gV~yeErDVs~d--~---e~--reELkels~G~~~TvPqVFV 249 (333)
...+++|+.+. |++|+...-+|+ .+|+.+..++++-. + .. -..+.+.+ | ...+|.+|+
T Consensus 121 ~~gL~~F~~~~------C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l-~-v~~~Pal~L 189 (215)
T PF13728_consen 121 KYGLFFFYRSD------CPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRL-G-VKVTPALFL 189 (215)
T ss_pred CeEEEEEEcCC------CchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHc-C-CCcCCEEEE
Confidence 35578888775 999998777766 47999888888631 0 01 13344556 6 789999986
No 230
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=82.91 E-value=2.7 Score=40.37 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=39.4
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHH----hCCCcEEEEECCCCHH-------HHHHHHHHhCCCcceecEEEE
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFE----VNRVVTDERDVSLHGQ-------FLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~----~~gV~yeErDVs~d~e-------~reELkels~G~~~TvPqVFV 249 (333)
...||.|..++ |++|+...-+|+ .+|+.+..++++.+.. .-..+.+.+ | ...+|.+|+
T Consensus 167 k~~Lv~F~Asw------Cp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~-g-V~~vPtl~L 235 (271)
T TIGR02740 167 KSGLFFFFKSD------CPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQL-K-IRTVPAVFL 235 (271)
T ss_pred CeEEEEEECCC------CccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHc-C-CCcCCeEEE
Confidence 34577788887 999998776665 4688887888765321 012345556 6 889999864
No 231
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.56 E-value=1 Score=45.16 Aligned_cols=49 Identities=31% Similarity=0.666 Sum_probs=37.1
Q ss_pred CccccCCCCcce-----eeCCCCCCcceeee-c-CC------ccccCCCcCcCCcc-----cCCCCC
Q 044679 284 RQACEGCGGARF-----VPCFDCGGSCKVVL-A-TG------DKQRCGVCNENGLV-----HCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG~rf-----vpC~~C~GS~K~~~-~-~~------~~~rC~~CNENGL~-----rCp~C~ 332 (333)
...|..|-|.++ ..|..|.|+.-... . .+ ..++|..||..|-+ +|+.|.
T Consensus 127 ~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~ 193 (337)
T KOG0712|consen 127 NFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCS 193 (337)
T ss_pred CccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccc
Confidence 457888877765 34999999954432 2 11 37999999999999 999996
No 232
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=82.55 E-value=1.2 Score=45.75 Aligned_cols=41 Identities=24% Similarity=0.696 Sum_probs=31.5
Q ss_pred CccccCCCCcce---------------eeCCCCCCcceeeecCCccccCCCcCcCCccc
Q 044679 284 RQACEGCGGARF---------------VPCFDCGGSCKVVLATGDKQRCGVCNENGLVH 327 (333)
Q Consensus 284 ~~~C~~CgG~rf---------------vpC~~C~GS~K~~~~~~~~~rC~~CNENGL~r 327 (333)
...|..|+|.+. .+|..|+|.-+++.. ..+|..|+-.|.++
T Consensus 166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~---~~~C~~C~G~g~v~ 221 (421)
T PTZ00037 166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE---SKKCKNCSGKGVKK 221 (421)
T ss_pred CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc---cccCCcCCCcceee
Confidence 457999998884 389999999887542 35699999888764
No 233
>PRK14281 chaperone protein DnaJ; Provisional
Probab=82.44 E-value=1.1 Score=45.15 Aligned_cols=39 Identities=36% Similarity=0.865 Sum_probs=31.1
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCccc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLVH 327 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~r 327 (333)
...|..|+|.+.+ +|..|+|.-++.. .+|..|+-.|.+.
T Consensus 179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v~ 232 (397)
T PRK14281 179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVK-----DRCPACYGEGIKQ 232 (397)
T ss_pred CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeC-----CCCCCCCCCccEe
Confidence 4579999998853 6999999988842 4699999888763
No 234
>PTZ00057 glutathione s-transferase; Provisional
Probab=82.18 E-value=9.6 Score=34.10 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=47.4
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHH--HHHHH-HhCCCcceecEEEECCEEEecchhhH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHG-QFL--NELKD-LFGGETVTVPRVFIKGRYVGGVDELT 261 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~-e~r--eELke-ls~G~~~TvPqVFVdG~~IGG~Del~ 261 (333)
+++||+-.. -..+..++-+|+..||+|+.+.+.... ++. ++++. .. .....+|.+.+||..|.....+.
T Consensus 4 ~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~-nP~g~vP~L~~~~~~l~eS~AI~ 76 (205)
T PTZ00057 4 EIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKD-TPFEQVPILEMDNIIFAQSQAIV 76 (205)
T ss_pred ceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCC-CCCCCCCEEEECCEEEecHHHHH
Confidence 478888664 457889999999999999999875432 221 11111 12 23678999999997776555544
Q ss_pred h
Q 044679 262 E 262 (333)
Q Consensus 262 e 262 (333)
.
T Consensus 77 ~ 77 (205)
T PTZ00057 77 R 77 (205)
T ss_pred H
Confidence 4
No 235
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=82.15 E-value=2.7 Score=34.65 Aligned_cols=55 Identities=16% Similarity=0.124 Sum_probs=34.8
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhC---------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVN---------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~---------gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
.-||.|+++| |+.|+.+...|+.. .+.+-.+|.+.+. ..++.+.. + ...+|++++
T Consensus 21 ~vvV~f~a~w------C~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~-~-i~~~Pt~~l 84 (114)
T cd02992 21 AWLVEFYASW------CGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDF-G-VTGYPTLRY 84 (114)
T ss_pred eEEEEEECCC------CHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhC-C-CCCCCEEEE
Confidence 3466777887 99999888776542 1445556654332 13444455 5 788998754
No 236
>PRK11752 putative S-transferase; Provisional
Probab=82.14 E-value=4.4 Score=38.27 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=49.7
Q ss_pred CCCCCcEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCC--CHHHHHHHHHHhCCCcceecEEEECC-
Q 044679 181 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSL--HGQFLNELKDLFGGETVTVPRVFIKG- 251 (333)
Q Consensus 181 p~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~--d~e~reELkels~G~~~TvPqVFVdG- 251 (333)
+.+...+.||+.. +++|.+|+-+|+.+ |++|+.+.|+. ......++.++. - ..+||.+..++
T Consensus 39 ~~~~~~~~Ly~~~-------s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iN-P-~GkVP~Lv~~dg 109 (264)
T PRK11752 39 PVGKHPLQLYSLG-------TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEIN-P-NSKIPALLDRSG 109 (264)
T ss_pred CCCCCCeEEecCC-------CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhC-C-CCCCCEEEeCCC
Confidence 3355679999854 68999999999986 88888776643 222334666664 2 67899998753
Q ss_pred ---EEEecchhhHhH
Q 044679 252 ---RYVGGVDELTEL 263 (333)
Q Consensus 252 ---~~IGG~Del~eL 263 (333)
..|-....|.+.
T Consensus 110 ~~~~~L~ES~AIl~Y 124 (264)
T PRK11752 110 NPPIRVFESGAILLY 124 (264)
T ss_pred CCCeEEEcHHHHHHH
Confidence 345555444443
No 237
>PRK14289 chaperone protein DnaJ; Provisional
Probab=82.13 E-value=1.2 Score=44.66 Aligned_cols=39 Identities=36% Similarity=0.949 Sum_probs=30.4
Q ss_pred CCccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 283 GRQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 283 ~~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
....|..|.|.+.+ +|..|+|.-+.. ..+|..|+-.|.+
T Consensus 170 ~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 223 (386)
T PRK14289 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKII-----KKKCKKCGGEGIV 223 (386)
T ss_pred CCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCcccccc-----CcCCCCCCCCcEE
Confidence 35679999998765 799999997763 3579999988865
No 238
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=82.09 E-value=1 Score=41.57 Aligned_cols=27 Identities=22% Similarity=0.652 Sum_probs=22.7
Q ss_pred CccccCCCCcceee-----CCCCCCcceeeec
Q 044679 284 RQACEGCGGARFVP-----CFDCGGSCKVVLA 310 (333)
Q Consensus 284 ~~~C~~CgG~rfvp-----C~~C~GS~K~~~~ 310 (333)
...|..|+|.|++. |..|+|+-++-..
T Consensus 99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~ 130 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT 130 (186)
T ss_pred CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence 67899999999986 9999998776543
No 239
>PRK14290 chaperone protein DnaJ; Provisional
Probab=81.94 E-value=1.2 Score=44.33 Aligned_cols=38 Identities=32% Similarity=0.809 Sum_probs=29.3
Q ss_pred CccccCCCCcce---------------eeCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARF---------------VPCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rf---------------vpC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|+|.+. .+|..|+|.-+.. ..+|..|+-.|.+
T Consensus 165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 217 (365)
T PRK14290 165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIP-----EEKCPRCNGTGTV 217 (365)
T ss_pred CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEc-----cCCCCCCCCceeE
Confidence 457999998884 4799999988772 3579999887765
No 240
>PRK14295 chaperone protein DnaJ; Provisional
Probab=81.85 E-value=1.1 Score=45.11 Aligned_cols=38 Identities=32% Similarity=0.772 Sum_probs=30.8
Q ss_pred CccccCCCCcce-----------eeCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARF-----------VPCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rf-----------vpC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|+|.+. ..|..|+|.-++. ...|..|+-.|.+
T Consensus 183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~~ 231 (389)
T PRK14295 183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-----DDPCLVCKGSGRA 231 (389)
T ss_pred CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-----ccCCCCCCCCceE
Confidence 467999999875 4899999998874 2569999988865
No 241
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=81.04 E-value=1.6 Score=42.66 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhH
Q 044679 201 YEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELT 261 (333)
Q Consensus 201 Cp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~ 261 (333)
-|+|.++.-+|+..+|+|+.++-++ +.++ ..-++|-|-+||++|-+.+-+.
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~~--------~~rS--r~G~lPFIELNGe~iaDS~~I~ 111 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCSL--------KRRS--RNGTLPFIELNGEHIADSDLIE 111 (281)
T ss_pred ChHHHHHHHHHHHhCCCceeccccc--------eeec--cCCCcceEEeCCeeccccHHHH
Confidence 4899999999999999999998653 2233 2569999999999999987653
No 242
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.94 E-value=1.4 Score=45.83 Aligned_cols=47 Identities=30% Similarity=0.638 Sum_probs=36.9
Q ss_pred CccccCCCCcceeeCCCCCCcceeeecCCccccCCCcCcCC--cccCCCCCC
Q 044679 284 RQACEGCGGARFVPCFDCGGSCKVVLATGDKQRCGVCNENG--LVHCPACSS 333 (333)
Q Consensus 284 ~~~C~~CgG~rfvpC~~C~GS~K~~~~~~~~~rC~~CNENG--L~rCp~C~~ 333 (333)
...|..||- -+.|..|+++...+. +...++|..|+-.- -.+||.|.+
T Consensus 213 ~~~C~~Cg~--~~~C~~C~~~l~~h~-~~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 213 NLLCRSCGY--ILCCPNCDVSLTYHK-KEGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred eeEhhhCcC--ccCCCCCCCceEEec-CCCeEEcCCCcCcCCCCCCCCCCCC
Confidence 458999997 578999999876644 44579999998765 457999964
No 243
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=80.90 E-value=1.4 Score=43.59 Aligned_cols=39 Identities=33% Similarity=0.877 Sum_probs=30.6
Q ss_pred CccccCCCCcce---------------eeCCCCCCcceeeecCCccccCCCcCcCCccc
Q 044679 284 RQACEGCGGARF---------------VPCFDCGGSCKVVLATGDKQRCGVCNENGLVH 327 (333)
Q Consensus 284 ~~~C~~CgG~rf---------------vpC~~C~GS~K~~~~~~~~~rC~~CNENGL~r 327 (333)
...|..|.|.+. .+|..|+|+-+... ..|..|+-.|.+.
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~-----~~C~~C~G~g~v~ 213 (354)
T TIGR02349 160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIK-----EPCSTCKGKGRVK 213 (354)
T ss_pred CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecC-----CCCCCCCCCcEec
Confidence 457999999864 47999999988742 3699999888764
No 244
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=80.74 E-value=4.4 Score=31.59 Aligned_cols=52 Identities=17% Similarity=0.267 Sum_probs=35.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHHhCCCcc--eecEEEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVSLHGQFLNELKDLFGGETV--TVPRVFI 249 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs~d~e~reELkels~G~~~--TvPqVFV 249 (333)
-+++|...+ |+.|..++..|+.. .+.|..+|++.... +.+.. | .. .+|+|.+
T Consensus 15 ~~~~f~~~~------~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~-~-i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKD------DSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYF-G-LKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCC------hhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHc-C-CChhhCCEEEE
Confidence 356666665 99999999988762 36677888776544 33444 4 44 8999864
No 245
>PRK14873 primosome assembly protein PriA; Provisional
Probab=78.34 E-value=2.1 Score=46.37 Aligned_cols=48 Identities=29% Similarity=0.657 Sum_probs=37.2
Q ss_pred CCccccCCCCcceeeCCCCCCcceeeecCCccccCCCcCcCC-cccCCCCCC
Q 044679 283 GRQACEGCGGARFVPCFDCGGSCKVVLATGDKQRCGVCNENG-LVHCPACSS 333 (333)
Q Consensus 283 ~~~~C~~CgG~rfvpC~~C~GS~K~~~~~~~~~rC~~CNENG-L~rCp~C~~ 333 (333)
+...|..||- -+-|..|+++...+. +...++|..|+-.- -.+||.|.+
T Consensus 382 p~l~C~~Cg~--~~~C~~C~~~L~~h~-~~~~l~Ch~CG~~~~p~~Cp~Cgs 430 (665)
T PRK14873 382 PSLACARCRT--PARCRHCTGPLGLPS-AGGTPRCRWCGRAAPDWRCPRCGS 430 (665)
T ss_pred CeeEhhhCcC--eeECCCCCCceeEec-CCCeeECCCCcCCCcCccCCCCcC
Confidence 3459999996 678999999987643 44579999998643 458999964
No 246
>PTZ00062 glutaredoxin; Provisional
Probab=78.14 E-value=6.4 Score=36.61 Aligned_cols=52 Identities=6% Similarity=0.092 Sum_probs=36.4
Q ss_pred CcEEEEE-cccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEEec
Q 044679 185 DGVVIYT-TSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYVGG 256 (333)
Q Consensus 185 ~kVVIYT-tSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~IGG 256 (333)
+.+|+|. .+| |+.|+.+..+|..+ .+.|..+|.+ + + ...+|.+ |-+|+.|+-
T Consensus 18 g~~vl~f~a~w------~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~-~-V~~vPtfv~~~~g~~i~r 77 (204)
T PTZ00062 18 GKLVLYVKSSK------EPEYEQLMDVCNALVEDFPSLEFYVVNLA------------D-A-NNEYGVFEFYQNSQLINS 77 (204)
T ss_pred CcEEEEEeCCC------CcchHHHHHHHHHHHHHCCCcEEEEEccc------------c-C-cccceEEEEEECCEEEee
Confidence 5556655 777 99999999998875 4556666643 4 5 7789965 357877654
No 247
>PRK14287 chaperone protein DnaJ; Provisional
Probab=77.88 E-value=1.6 Score=43.82 Aligned_cols=38 Identities=37% Similarity=0.984 Sum_probs=30.2
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ +|..|+|+-++. ...|..|+-.|.+
T Consensus 155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 207 (371)
T PRK14287 155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-----KQKCATCGGKGKV 207 (371)
T ss_pred CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-----cccCCCCCCeeEE
Confidence 4579999999753 699999998874 3569999987765
No 248
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=77.51 E-value=11 Score=31.49 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=36.4
Q ss_pred EEEEcccCCCCCCChhHH------HHHHHHHh--------CCCcEEEEECCCCHH--HHHHH-HHHhCCCcceecEEEEC
Q 044679 188 VIYTTSLRGVRRTYEDCN------RVRSIFEV--------NRVVTDERDVSLHGQ--FLNEL-KDLFGGETVTVPRVFIK 250 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~------~aK~lL~~--------~gV~yeErDVs~d~e--~reEL-kels~G~~~TvPqVFVd 250 (333)
+||++.. .|.-|. ..-.+|+. ..+.|.++||....+ ..+++ .++. ..-.-.|.|.|+
T Consensus 1 ~VYGAe~-----~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~-ede~fYPlV~i~ 74 (93)
T PF07315_consen 1 VVYGAEV-----ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERIL-EDELFYPLVVIN 74 (93)
T ss_dssp EEEE-SS-------GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHH-TTSS-SSEEEET
T ss_pred Ccccccc-----cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHH-hcccccceEEEC
Confidence 4677664 476664 44445543 356699999976543 33333 3444 445667999999
Q ss_pred CEEEecc
Q 044679 251 GRYVGGV 257 (333)
Q Consensus 251 G~~IGG~ 257 (333)
|++||..
T Consensus 75 ~eiV~EG 81 (93)
T PF07315_consen 75 DEIVAEG 81 (93)
T ss_dssp TEEEEES
T ss_pred CEEEecC
Confidence 9999843
No 249
>PRK10542 glutathionine S-transferase; Provisional
Probab=77.47 E-value=5 Score=35.16 Aligned_cols=59 Identities=8% Similarity=0.016 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHHhCCCcceecEEEE-CCEEEecchhhHhH
Q 044679 203 DCNRVRSIFEVNRVVTDERDVSLHG---QFLNELKDLFGGETVTVPRVFI-KGRYVGGVDELTEL 263 (333)
Q Consensus 203 ~C~~aK~lL~~~gV~yeErDVs~d~---e~reELkels~G~~~TvPqVFV-dG~~IGG~Del~eL 263 (333)
.+.+++-+|+.+||+|+.+.|+... ...+++.++. - ...+|.+.+ ||..|-....+.+.
T Consensus 10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~n-P-~g~vPvL~~~~g~~l~eS~aI~~Y 72 (201)
T PRK10542 10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAIN-P-KGQVPALLLDDGTLLTEGVAIMQY 72 (201)
T ss_pred HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhC-c-CCCCCeEEeCCCcEeecHHHHHHH
Confidence 4678888999999999987765432 1124566665 2 678999987 56666655555443
No 250
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=77.46 E-value=7.5 Score=29.61 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHHhCCCc-ceecEEEEC-CEEEecchhhHh
Q 044679 203 DCNRVRSIFEVNRVVTDERDVSL--HGQFLNELKDLFGGET-VTVPRVFIK-GRYVGGVDELTE 262 (333)
Q Consensus 203 ~C~~aK~lL~~~gV~yeErDVs~--d~e~reELkels~G~~-~TvPqVFVd-G~~IGG~Del~e 262 (333)
.+..++-+|+..||+|+.+.++. +....+++.+.. - . ..+|.+-.+ |..|-..-.+..
T Consensus 11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~-p-~~g~vP~l~~~~~~~l~es~AI~~ 72 (76)
T PF02798_consen 11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAIN-P-MFGKVPALEDGDGFVLTESNAILR 72 (76)
T ss_dssp TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHT-T-TSSSSSEEEETTTEEEESHHHHHH
T ss_pred chHHHHHHHHHhcccCceEEEecccccccchhhhhcc-c-ccceeeEEEECCCCEEEcHHHHHH
Confidence 78999999999999999876653 333336666664 2 5 799999999 887766555443
No 251
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=77.21 E-value=17 Score=30.96 Aligned_cols=61 Identities=16% Similarity=0.266 Sum_probs=35.2
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHH-------hCCCcEEEEECCCCHH-HH-----------------HHHHHHhCCC
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFE-------VNRVVTDERDVSLHGQ-FL-----------------NELKDLFGGE 240 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~-------~~gV~yeErDVs~d~e-~r-----------------eELkels~G~ 240 (333)
-++.|..++ |+.|.+....|. ..++.+..++.+.+.+ ++ .++.+.+ |
T Consensus 64 ~~l~f~a~~------C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~- 135 (173)
T PRK03147 64 VFLNFWGTW------CKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAY-G- 135 (173)
T ss_pred EEEEEECCc------CHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHc-C-
Confidence 455566555 999987544442 2356777777765542 22 2333444 4
Q ss_pred cceecEEE-E--CCEEE
Q 044679 241 TVTVPRVF-I--KGRYV 254 (333)
Q Consensus 241 ~~TvPqVF-V--dG~~I 254 (333)
...+|.+| | +|+.+
T Consensus 136 v~~~P~~~lid~~g~i~ 152 (173)
T PRK03147 136 VGPLPTTFLIDKDGKVV 152 (173)
T ss_pred CCCcCeEEEECCCCcEE
Confidence 66788765 5 46654
No 252
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=77.09 E-value=19 Score=31.69 Aligned_cols=36 Identities=6% Similarity=0.144 Sum_probs=23.4
Q ss_pred EEE-EEcccCCCCCCChhHHHHHHHHHh--------------CCCcEEEEECCCCHH
Q 044679 187 VVI-YTTSLRGVRRTYEDCNRVRSIFEV--------------NRVVTDERDVSLHGQ 228 (333)
Q Consensus 187 VVI-YTtSlrgiR~tCp~C~~aK~lL~~--------------~gV~yeErDVs~d~e 228 (333)
|+| |..+| |+.|++..-.|.. .++.+..++++.+.+
T Consensus 28 vlL~FwAsW------CppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~ 78 (146)
T cd03008 28 LLLFFGAVV------SPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQ 78 (146)
T ss_pred EEEEEECCC------ChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHH
Confidence 444 45555 9999988877754 146666777665543
No 253
>PRK14292 chaperone protein DnaJ; Provisional
Probab=76.84 E-value=2.1 Score=42.67 Aligned_cols=38 Identities=34% Similarity=0.865 Sum_probs=29.0
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|+|.+.+ .|..|+|.-+.. ...|..|+-.|.+
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 209 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-----TDPCTVCRGRGRT 209 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----CCCCCCCCCceEE
Confidence 4578899997754 599999988763 3679999887764
No 254
>PRK14293 chaperone protein DnaJ; Provisional
Probab=76.77 E-value=2.2 Score=42.73 Aligned_cols=38 Identities=34% Similarity=0.893 Sum_probs=27.6
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ .|..|+|.-++. ..+|..|+-.|.+
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 212 (374)
T PRK14293 160 PTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-----EDPCDACGGQGVK 212 (374)
T ss_pred CeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-----ccCCCCCCCCccc
Confidence 4568888888763 588888888763 2468888877764
No 255
>PRK14283 chaperone protein DnaJ; Provisional
Probab=76.49 E-value=2.6 Score=42.29 Aligned_cols=38 Identities=39% Similarity=0.952 Sum_probs=27.9
Q ss_pred CccccCCCCccee---------------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV---------------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv---------------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ .|..|+|.-+.. ...|..|+-.|.+
T Consensus 163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----~~~C~~C~G~g~v 215 (378)
T PRK14283 163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-----EKPCSNCHGKGVV 215 (378)
T ss_pred CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-----CCCCCCCCCceee
Confidence 4568888888664 588888887763 2568888877764
No 256
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=75.80 E-value=15 Score=29.85 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=23.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC----CCcEEEEECCCCH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN----RVVTDERDVSLHG 227 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~----gV~yeErDVs~d~ 227 (333)
-||.|..++ |+.|.+....|+.+ ++.+..++++...
T Consensus 28 vvv~F~a~~------C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~ 67 (127)
T cd03010 28 YLLNVWASW------CAPCREEHPVLMALARQGRVPIYGINYKDNP 67 (127)
T ss_pred EEEEEEcCc------CHHHHHHHHHHHHHHHhcCcEEEEEECCCCH
Confidence 356666665 99999877766543 4667677665443
No 257
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=75.61 E-value=2.4 Score=39.55 Aligned_cols=61 Identities=16% Similarity=0.194 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE-ECCEEEecchhhHhHH
Q 044679 200 TYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF-IKGRYVGGVDELTELN 264 (333)
Q Consensus 200 tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVF-VdG~~IGG~Del~eL~ 264 (333)
.||||.+|+.++--++|+++..-+..|.+. -=..+. | ...||.+. -+|++++-.-++....
T Consensus 8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmi-G-~KqVPiL~Kedg~~m~ESlDIV~y~ 69 (215)
T COG2999 8 HCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMI-G-QKQVPILQKEDGRAMPESLDIVHYV 69 (215)
T ss_pred cChHHHHHHHHhhccCCChhhheeccCccc--Chhhhh-c-ccccceEEccccccchhhhHHHHHH
Confidence 599999999999999999988776655431 111234 6 88999886 4789998776665554
No 258
>PRK14291 chaperone protein DnaJ; Provisional
Probab=75.55 E-value=2.8 Score=42.17 Aligned_cols=37 Identities=38% Similarity=0.983 Sum_probs=28.6
Q ss_pred CccccCCCCccee-----------eCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGARFV-----------PCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~rfv-----------pC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
...|..|.|.+.+ +|..|+|...+ ...|..|+-.|.+
T Consensus 173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~------~~~C~~C~G~g~v 220 (382)
T PRK14291 173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL------REPCSKCNGRGLV 220 (382)
T ss_pred CccCCCCCCceEEEEecceEEEEecCCCCCCceEE------ccCCCCCCCCceE
Confidence 5579999998865 79999999842 2569999887765
No 259
>PRK04023 DNA polymerase II large subunit; Validated
Probab=75.38 E-value=8.6 Score=43.77 Aligned_cols=44 Identities=30% Similarity=0.690 Sum_probs=31.8
Q ss_pred CCccccCCCCc-ceeeCCCCCCcceeeecCCccccCCCcCcCCc-ccCCCCC
Q 044679 283 GRQACEGCGGA-RFVPCFDCGGSCKVVLATGDKQRCGVCNENGL-VHCPACS 332 (333)
Q Consensus 283 ~~~~C~~CgG~-rfvpC~~C~GS~K~~~~~~~~~rC~~CNENGL-~rCp~C~ 332 (333)
+...|..||-. -+..|..|+.-. ....+|+.|-..+- -.||.|-
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~T------e~i~fCP~CG~~~~~y~CPKCG 670 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHT------EPVYRCPRCGIEVEEDECEKCG 670 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCC------CcceeCccccCcCCCCcCCCCC
Confidence 46689999976 344799998762 24578999966543 5699884
No 260
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.75 E-value=3.1 Score=42.26 Aligned_cols=39 Identities=33% Similarity=0.860 Sum_probs=29.5
Q ss_pred CCccccCCCCcce-------------eeCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 283 GRQACEGCGGARF-------------VPCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 283 ~~~~C~~CgG~rf-------------vpC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
....|..|.|.+. +.|..|+|+-+++ .-.|+.|+-.|.+
T Consensus 158 ~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-----~~pC~~C~G~G~v 209 (371)
T COG0484 158 DPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-----KDPCGKCKGKGRV 209 (371)
T ss_pred CCCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-----CCCCCCCCCCCeE
Confidence 4568888888874 4788888887774 3678888877764
No 261
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=73.37 E-value=10 Score=40.23 Aligned_cols=55 Identities=11% Similarity=0.171 Sum_probs=36.9
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHH-------Hh-CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIF-------EV-NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL-------~~-~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
+|-|+.+| |+.|+.++... +. .++.+..+|++.+..-..++.+.. + ...+|.+++
T Consensus 478 lVdF~A~W------C~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~-~-v~g~Pt~~~ 540 (571)
T PRK00293 478 MLDLYADW------CVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHY-N-VLGLPTILF 540 (571)
T ss_pred EEEEECCc------CHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHc-C-CCCCCEEEE
Confidence 45577777 99999876542 11 357788899986544334555666 6 788999754
No 262
>PRK05580 primosome assembly protein PriA; Validated
Probab=72.95 E-value=3.2 Score=44.85 Aligned_cols=48 Identities=27% Similarity=0.600 Sum_probs=36.4
Q ss_pred CCccccCCCCcceeeCCCCCCcceeeecCCccccCCCcCcCC--cccCCCCCC
Q 044679 283 GRQACEGCGGARFVPCFDCGGSCKVVLATGDKQRCGVCNENG--LVHCPACSS 333 (333)
Q Consensus 283 ~~~~C~~CgG~rfvpC~~C~GS~K~~~~~~~~~rC~~CNENG--L~rCp~C~~ 333 (333)
+...|..||- -+.|..|+++...+ .+...++|..|+-.- -.+||.|.+
T Consensus 380 ~~~~C~~Cg~--~~~C~~C~~~l~~h-~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~ 429 (679)
T PRK05580 380 PFLLCRDCGW--VAECPHCDASLTLH-RFQRRLRCHHCGYQEPIPKACPECGS 429 (679)
T ss_pred CceEhhhCcC--ccCCCCCCCceeEE-CCCCeEECCCCcCCCCCCCCCCCCcC
Confidence 3568999997 46799999986543 345679999998765 458999954
No 263
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=72.63 E-value=11 Score=28.97 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=29.6
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh---------CCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV---------NRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~---------~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
+|+|+..| |++|+.+.+.+-+ .++-+..+|++...... .+.. ..+|.++|
T Consensus 21 lv~f~a~w------C~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-~~~~------~~~P~~~~ 79 (82)
T PF13899_consen 21 LVDFGADW------CPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-QFDR------QGYPTFFF 79 (82)
T ss_dssp EEEEETTT------THHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-HHHH------CSSSEEEE
T ss_pred EEEEECCC------CHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-HhCC------ccCCEEEE
Confidence 45566665 9999988876532 34557777775443321 1211 22888865
No 264
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=72.12 E-value=3.4 Score=34.00 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCcEEEEECC-CCHHHHHHHH------HHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 206 RVRSIFEVNRVVTDERDVS-LHGQFLNELK------DLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 206 ~aK~lL~~~gV~yeErDVs-~d~e~reELk------els~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
.+..++...|+...+++-. .+.++.+.++ ... | ...+|.++|+|+.+-|+.....|
T Consensus 87 ~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-i~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 87 SLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARAL-G-ITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred HHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHc-C-CCcCCeEEECCEEecCCCCHHHH
Confidence 4667788888775433211 1223333332 223 4 77899999999999998876544
No 265
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=71.81 E-value=3 Score=28.59 Aligned_cols=27 Identities=30% Similarity=0.662 Sum_probs=21.2
Q ss_pred eeCCCCCCcceeeec----CCccccCCCcCc
Q 044679 296 VPCFDCGGSCKVVLA----TGDKQRCGVCNE 322 (333)
Q Consensus 296 vpC~~C~GS~K~~~~----~~~~~rC~~CNE 322 (333)
+-|+.|+...++-.+ .++.+||+.|.+
T Consensus 3 i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~ 33 (37)
T PF13719_consen 3 ITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH 33 (37)
T ss_pred EECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence 679999998887653 357899999975
No 266
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=71.67 E-value=19 Score=32.01 Aligned_cols=43 Identities=9% Similarity=0.039 Sum_probs=28.0
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHH---hCCCcEEEEECCCCHH-HHHHHH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFE---VNRVVTDERDVSLHGQ-FLNELK 234 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~---~~gV~yeErDVs~d~e-~reELk 234 (333)
-|+.|..+| |+.|++..-.|. ..++.+.-++++.+.+ +++.++
T Consensus 71 vvv~Fwatw------C~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~ 117 (185)
T PRK15412 71 VLLNVWATW------CPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLK 117 (185)
T ss_pred EEEEEECCC------CHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH
Confidence 356677777 999997655554 4578888888766543 444333
No 267
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=71.64 E-value=6.1 Score=40.68 Aligned_cols=63 Identities=24% Similarity=0.371 Sum_probs=41.5
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHH---hC--CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecc
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFE---VN--RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGV 257 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~---~~--gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~ 257 (333)
+.-..--|.+-. |..|-.+.+.|. -+ +|...-+| ..-|++|...+ + ...||.||+||+..|.-
T Consensus 116 g~~~FETy~Slt------C~nCPDVVQALN~msvlNp~I~H~~Id---Ga~Fq~Evear--~-IMaVPtvflnGe~fg~G 183 (520)
T COG3634 116 GDFHFETYFSLT------CHNCPDVVQALNLMSVLNPRIKHTAID---GALFQDEVEAR--N-IMAVPTVFLNGEEFGQG 183 (520)
T ss_pred CceeEEEEEEee------ccCChHHHHHHHHHHhcCCCceeEEec---chhhHhHHHhc--c-ceecceEEEcchhhccc
Confidence 334455666654 656655555554 44 34455555 55678888876 3 88999999999988754
No 268
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=71.11 E-value=4.4 Score=44.56 Aligned_cols=47 Identities=26% Similarity=0.664 Sum_probs=36.6
Q ss_pred CccccCCCCcceeeCCCCCCcceeeecCCccccCCCcCcCCc--ccCCCCCC
Q 044679 284 RQACEGCGGARFVPCFDCGGSCKVVLATGDKQRCGVCNENGL--VHCPACSS 333 (333)
Q Consensus 284 ~~~C~~CgG~rfvpC~~C~GS~K~~~~~~~~~rC~~CNENGL--~rCp~C~~ 333 (333)
.-.|..||- -.-|.+|.++.- ++...+.++|..|+-..- ..||.|.|
T Consensus 435 ~l~C~~Cg~--v~~Cp~Cd~~lt-~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs 483 (730)
T COG1198 435 LLLCRDCGY--IAECPNCDSPLT-LHKATGQLRCHYCGYQEPIPQSCPECGS 483 (730)
T ss_pred eeecccCCC--cccCCCCCcceE-EecCCCeeEeCCCCCCCCCCCCCCCCCC
Confidence 568999986 456999999953 345557899999998854 57999965
No 269
>PF15616 TerY-C: TerY-C metal binding domain
Probab=70.92 E-value=4 Score=35.88 Aligned_cols=39 Identities=28% Similarity=0.757 Sum_probs=29.9
Q ss_pred CccccCCCCc-ceeeCCCCCCcceeee-cCCccccCCCcCcCCcc
Q 044679 284 RQACEGCGGA-RFVPCFDCGGSCKVVL-ATGDKQRCGVCNENGLV 326 (333)
Q Consensus 284 ~~~C~~CgG~-rfvpC~~C~GS~K~~~-~~~~~~rC~~CNENGL~ 326 (333)
.-.|..||.. .|+.| .|+ |++- .......||.|..+|-.
T Consensus 77 ~PgCP~CGn~~~fa~C-~CG---kl~Ci~g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 77 APGCPHCGNQYAFAVC-GCG---KLFCIDGEGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCCcChhcEEEe-cCC---CEEEeCCCCCEECCCCCCeeee
Confidence 4679999999 99999 575 4553 44468999999988753
No 270
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=70.80 E-value=17 Score=34.94 Aligned_cols=68 Identities=24% Similarity=0.328 Sum_probs=47.0
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCc--EEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEE-ec---ch
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVV--TDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYV-GG---VD 258 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~--yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~I-GG---~D 258 (333)
-.|-||+-- ||--|...-+.|+++|+- +..+|-..-.. ..++. + .-++|-||+||+.+ +| .+
T Consensus 11 ~~VkI~~Hk------tC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~---~-V~SvP~Vf~DGel~~~dpVdp~ 78 (265)
T COG5494 11 MEVKIFTHK------TCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK---G-VISVPSVFIDGELVYADPVDPE 78 (265)
T ss_pred eEEEEEEec------chHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc---c-eeecceEEEcCeEEEcCCCCHH
Confidence 458888876 599999999999998865 66666554432 12221 3 78999999999976 33 34
Q ss_pred hhHhHH
Q 044679 259 ELTELN 264 (333)
Q Consensus 259 el~eL~ 264 (333)
++..+.
T Consensus 79 ~ies~~ 84 (265)
T COG5494 79 EIESIL 84 (265)
T ss_pred HHHHHH
Confidence 444443
No 271
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=70.55 E-value=11 Score=39.43 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=38.5
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhC-------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECC
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVN-------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKG 251 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-------gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG 251 (333)
-||.|+.+| |++|+.+..+|+.. ++.|..+|++.+.. +.+...+ + ...+|+|+ .+|
T Consensus 374 VLV~FyApW------C~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~-~-I~~~PTii~Fk~g 438 (463)
T TIGR00424 374 WLVVLYAPW------CPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQEL-Q-LGSFPTILFFPKH 438 (463)
T ss_pred EEEEEECCC------ChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHc-C-CCccceEEEEECC
Confidence 477888898 99999988877542 47788889886631 1222334 4 77889874 455
No 272
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=69.43 E-value=3.4 Score=38.19 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=24.8
Q ss_pred eeeCCCCCCcceeeecCCccccCCCcCcCCccc
Q 044679 295 FVPCFDCGGSCKVVLATGDKQRCGVCNENGLVH 327 (333)
Q Consensus 295 fvpC~~C~GS~K~~~~~~~~~rC~~CNENGL~r 327 (333)
-..|+.|+|+-++.... ..|+.|+-.|-++
T Consensus 99 ~~~C~~C~G~G~~i~~~---~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLIQRRQ---RECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEEecCC---CCCCCCCCccEEe
Confidence 78999999999886532 6899999998764
No 273
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.99 E-value=14 Score=31.19 Aligned_cols=69 Identities=10% Similarity=0.162 Sum_probs=44.4
Q ss_pred CCCcEEEEEcccCCCCCCChhHH------HHHHHHHh--------CCCcEEEEECCCCH--HHHHHHHHHhCCCcceecE
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCN------RVRSIFEV--------NRVVTDERDVSLHG--QFLNELKDLFGGETVTVPR 246 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~------~aK~lL~~--------~gV~yeErDVs~d~--e~reELkels~G~~~TvPq 246 (333)
.+.+++||+... .|--|. ..-.+|+. +...|+++||...+ +...++.+..-..-.-.|.
T Consensus 3 ~~~~l~VyGae~-----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl 77 (106)
T COG4837 3 NEAKLVVYGAEV-----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL 77 (106)
T ss_pred ceeEEEEecchh-----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence 346789998875 476664 34455553 34558899997543 3334444433133566799
Q ss_pred EEECCEEEec
Q 044679 247 VFIKGRYVGG 256 (333)
Q Consensus 247 VFVdG~~IGG 256 (333)
|.|+|++|+.
T Consensus 78 ivvedeiVae 87 (106)
T COG4837 78 IVVEDEIVAE 87 (106)
T ss_pred EEEcceEeec
Confidence 9999999964
No 274
>PTZ00102 disulphide isomerase; Provisional
Probab=67.75 E-value=14 Score=36.89 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=38.1
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHH-------hC--CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFE-------VN--RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGR 252 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~-------~~--gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~ 252 (333)
.-+|.|+.+| |++|+++...+. .. +|.|-.+|.+.+.+ |.+.. + ...+|.++ -+|.
T Consensus 51 ~~lv~f~a~w------C~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~-~-i~~~Pt~~~~~~g~ 117 (477)
T PTZ00102 51 IVLVKFYAPW------CGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEF-G-VRGYPTIKFFNKGN 117 (477)
T ss_pred cEEEEEECCC------CHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhc-C-CCcccEEEEEECCc
Confidence 4578888888 999998765433 22 37788888877754 44444 5 77899874 3554
No 275
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=67.70 E-value=4.1 Score=34.76 Aligned_cols=22 Identities=36% Similarity=0.791 Sum_probs=12.7
Q ss_pred ccccCCCCcceeeCCCCCCcce
Q 044679 285 QACEGCGGARFVPCFDCGGSCK 306 (333)
Q Consensus 285 ~~C~~CgG~rfvpC~~C~GS~K 306 (333)
..|..|.|.+.++|..|+|+..
T Consensus 76 ~~C~~C~G~Gk~~C~~C~G~G~ 97 (111)
T PLN03165 76 SKCINCDGAGSLTCTTCQGSGI 97 (111)
T ss_pred EECCCCCCcceeeCCCCCCCEE
Confidence 3566666666556666666543
No 276
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=67.24 E-value=26 Score=30.69 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=23.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh---CCCcEEEEECCCC
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV---NRVVTDERDVSLH 226 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~---~gV~yeErDVs~d 226 (333)
-|+.|..+| |+.|++....|+. .++.+..++++..
T Consensus 66 vll~F~a~w------C~~C~~~~p~l~~l~~~~~~vi~V~~~~~ 103 (173)
T TIGR00385 66 VLLNVWASW------CPPCRAEHPYLNELAKDGLPIVGVDYKDQ 103 (173)
T ss_pred EEEEEECCc------CHHHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 355566665 9999987665544 4777888877543
No 277
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=67.21 E-value=3.1 Score=40.05 Aligned_cols=62 Identities=24% Similarity=0.496 Sum_probs=30.6
Q ss_pred hhhHhHHHhCcHHHHHHhhhhh--------cccCCccccCCC--------------CcceeeCCCCCCcceeeecCCccc
Q 044679 258 DELTELNESGKLGRMLRSARVE--------MGIGRQACEGCG--------------GARFVPCFDCGGSCKVVLATGDKQ 315 (333)
Q Consensus 258 Del~eL~EsGeL~~lLk~~~~~--------~g~~~~~C~~Cg--------------G~rfvpC~~C~GS~K~~~~~~~~~ 315 (333)
+.+..+.-..-|+.++...... .+...+.|..|| |.||.-|+.|+..-+. ...
T Consensus 138 ~~~l~~~~~aaL~~~~~~~a~~l~~~~~~~~~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-----~R~ 212 (290)
T PF04216_consen 138 PEALAFFLWAALQPFLAALAAALDAALLPPEGWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-----VRI 212 (290)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHT--TTSSS---TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE-------TT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccccccccCCccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-----cCC
Confidence 3344444445566666554331 122357999998 5699999999887544 347
Q ss_pred cCCCcCcCC
Q 044679 316 RCGVCNENG 324 (333)
Q Consensus 316 rC~~CNENG 324 (333)
+|+.|.+..
T Consensus 213 ~Cp~Cg~~~ 221 (290)
T PF04216_consen 213 KCPYCGNTD 221 (290)
T ss_dssp S-TTT---S
T ss_pred CCcCCCCCC
Confidence 899997643
No 278
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=67.13 E-value=6.2 Score=34.25 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHhCCCcEEEEE-CCCCHHHHHHHHHH------hCCCcceecEEEECCEEEecchhhHhH
Q 044679 205 NRVRSIFEVNRVVTDERD-VSLHGQFLNELKDL------FGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 205 ~~aK~lL~~~gV~yeErD-Vs~d~e~reELkel------s~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
..+..++...|+..+++. ...+.++++.|.+- . | ...+|.++|+|+++-|.+.+..+
T Consensus 124 ~~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~-g-i~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 124 AVLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIAR-G-VFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHc-C-CCcCCeEEECCeeecccccHHHH
Confidence 346778888888643322 12344444444332 2 5 78999999999999999887543
No 279
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.74 E-value=2.8 Score=47.07 Aligned_cols=25 Identities=32% Similarity=0.717 Sum_probs=20.2
Q ss_pred CCccccCCCCccee------------eCCCCCCccee
Q 044679 283 GRQACEGCGGARFV------------PCFDCGGSCKV 307 (333)
Q Consensus 283 ~~~~C~~CgG~rfv------------pC~~C~GS~K~ 307 (333)
..+.|..|.|.|++ +|..|||.+..
T Consensus 735 ~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 771 (924)
T TIGR00630 735 KGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYN 771 (924)
T ss_pred CCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeC
Confidence 46789999999965 79999998754
No 280
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=65.68 E-value=17 Score=35.80 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=38.8
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHH-------hCC--CcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFE-------VNR--VVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRY 253 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~-------~~g--V~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~ 253 (333)
-+|.|+.+| |++|+++...+. ..+ |.|..+|.+.+.+ |.+.+ | ...+|.++ -+|+.
T Consensus 21 ~~v~f~a~w------C~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~-~-i~~~Pt~~~~~~g~~ 87 (462)
T TIGR01130 21 VLVEFYAPW------CGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD----LAQKY-G-VSGYPTLKIFRNGED 87 (462)
T ss_pred EEEEEECCC------CHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH----HHHhC-C-CccccEEEEEeCCcc
Confidence 378888888 999998765443 334 7788888877654 44445 5 77899874 45654
No 281
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=65.61 E-value=4.4 Score=26.68 Aligned_cols=24 Identities=33% Similarity=0.727 Sum_probs=13.9
Q ss_pred CCCCCCcceeeecCCccccCCCcCc
Q 044679 298 CFDCGGSCKVVLATGDKQRCGVCNE 322 (333)
Q Consensus 298 C~~C~GS~K~~~~~~~~~rC~~CNE 322 (333)
|+.|++.... ...+-.++|+.|+.
T Consensus 6 C~~CG~~t~~-~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 6 CGRCGAPTKP-APGGWARRCPSCGH 29 (32)
T ss_dssp -TTT--BEEE--SSSS-EEESSSS-
T ss_pred cCcCCccccC-CCCcCEeECCCCcC
Confidence 7788777766 44467899999963
No 282
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=64.90 E-value=6.6 Score=39.01 Aligned_cols=37 Identities=35% Similarity=0.872 Sum_probs=25.4
Q ss_pred CCccccCCC--------------CcceeeCCCCCCcceeeecCCccccCCCcCcCC
Q 044679 283 GRQACEGCG--------------GARFVPCFDCGGSCKVVLATGDKQRCGVCNENG 324 (333)
Q Consensus 283 ~~~~C~~Cg--------------G~rfvpC~~C~GS~K~~~~~~~~~rC~~CNENG 324 (333)
..+.|..|| |.||+-|+.|+..-.. ...+|+.|.+.+
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~-----~R~~C~~Cg~~~ 236 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV-----VRVKCSNCEQSG 236 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc-----cCccCCCCCCCC
Confidence 467788886 4578888888766433 347788887654
No 283
>PLN02309 5'-adenylylsulfate reductase
Probab=64.03 E-value=13 Score=38.77 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhC-------CCcEEEEECC-CCHHHHHHHHHHhCCCcceecEEEE
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-------RVVTDERDVS-LHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-------gV~yeErDVs-~d~e~reELkels~G~~~TvPqVFV 249 (333)
+..-||.|+.+| |++|+.+...|+.. +|.|-.+|++ .+.++ ..+.+ + ...+|+|++
T Consensus 365 ~k~vlV~FyApW------C~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~-~-I~~~PTil~ 428 (457)
T PLN02309 365 KEPWLVVLYAPW------CPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQEL-Q-LGSFPTILL 428 (457)
T ss_pred CCeEEEEEECCC------ChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhC-C-CceeeEEEE
Confidence 334588999998 99999988877643 4777888877 44332 22234 5 778999743
No 284
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=62.51 E-value=30 Score=30.52 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=26.8
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHH----hCCCcEEEEECCC
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFE----VNRVVTDERDVSL 225 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~----~~gV~yeErDVs~ 225 (333)
+..||.|..+| |+.|++..-.|+ .+++.+.-++++.
T Consensus 51 ~~~lvnFWAsW------CppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 51 DYALVFFYQST------CPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred CCEEEEEECCC------ChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 34589999998 999997766665 4577777777654
No 285
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=62.49 E-value=13 Score=31.17 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=17.2
Q ss_pred cceecEEEECCEEEecchhhHh
Q 044679 241 TVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 241 ~~TvPqVFVdG~~IGG~Del~e 262 (333)
...+|.+||||+++.|.-.+.+
T Consensus 134 i~~tPt~~inG~~~~~~~~~~~ 155 (162)
T PF13462_consen 134 ITGTPTFFINGKYVVGPYTIEE 155 (162)
T ss_dssp -SSSSEEEETTCEEETTTSHHH
T ss_pred CccccEEEECCEEeCCCCCHHH
Confidence 6789999999999987655543
No 286
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=61.45 E-value=27 Score=27.19 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=42.1
Q ss_pred CChhHHHHHHHHHhCCCc---EEEEECCCCHHHHHHHHHHhCCCcceecEEEE-CCEEEecchhhHhH
Q 044679 200 TYEDCNRVRSIFEVNRVV---TDERDVSLHGQFLNELKDLFGGETVTVPRVFI-KGRYVGGVDELTEL 263 (333)
Q Consensus 200 tCp~C~~aK~lL~~~gV~---yeErDVs~d~e~reELkels~G~~~TvPqVFV-dG~~IGG~Del~eL 263 (333)
.-+.|-++..+|+-.+.+ |+.+-.+.- . ++ ....+|.+.. +|+.+.|+..+.+.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~-~-------~S--ptg~LP~L~~~~~~~vsg~~~Iv~y 70 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP-W-------LS--PTGELPALIDSGGTWVSGFRNIVEY 70 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC-C-------cC--CCCCCCEEEECCCcEEECHHHHHHh
Confidence 358999999999999999 776654421 1 11 1568999999 99999999998765
No 287
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=60.75 E-value=6 Score=42.68 Aligned_cols=42 Identities=29% Similarity=0.565 Sum_probs=30.2
Q ss_pred CccccCCCCccee----eCCCCCCcceeeecCC---ccc-----cCCCcCcCCc
Q 044679 284 RQACEGCGGARFV----PCFDCGGSCKVVLATG---DKQ-----RCGVCNENGL 325 (333)
Q Consensus 284 ~~~C~~CgG~rfv----pC~~C~GS~K~~~~~~---~~~-----rC~~CNENGL 325 (333)
...|.-|.|.+-| .|+.|+|+-|++.-+. .+. -|+.|-.|+-
T Consensus 53 ~~pc~~c~gkG~V~v~~~c~~c~G~gkv~~c~~cG~~~~~~~~~lc~~c~~~~~ 106 (715)
T COG1107 53 EIPCPKCRGKGTVTVYDTCPECGGTGKVLTCDICGDIIVPWEEGLCPECRRKPK 106 (715)
T ss_pred CCCCCeeccceeEEEEeecccCCCceeEEeeccccceecCcccccChhHhhCCc
Confidence 5689999998865 6999999999875321 122 3777766654
No 288
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=60.26 E-value=6.4 Score=38.76 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=53.4
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLH--GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTELN 264 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d--~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL~ 264 (333)
.|+|.-+. --..++|+-.+..+||.|+++||+-- +..-..+..+. ....||++.-+...|-.++.+.+..
T Consensus 27 ~vLyhhpy------sf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlN--p~gevPVl~~g~~II~d~tqIIdYv 98 (325)
T KOG4420|consen 27 LVLYHHPY------SFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLN--PGGEVPVLIHGDNIISDYTQIIDYV 98 (325)
T ss_pred ceeeecCc------ccccceeeeehhhcccccceeeccCccccccCchheecC--CCCCCceEecCCeecccHHHHHHHH
Confidence 88998876 34689999999999999999999732 22223344443 2567898766677788899888887
Q ss_pred Hh
Q 044679 265 ES 266 (333)
Q Consensus 265 Es 266 (333)
|.
T Consensus 99 Er 100 (325)
T KOG4420|consen 99 ER 100 (325)
T ss_pred HH
Confidence 76
No 289
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=59.90 E-value=4.2 Score=29.71 Aligned_cols=33 Identities=42% Similarity=0.798 Sum_probs=22.5
Q ss_pred CCcceeeCCCCCCccee----ee-c-CCccccCCCcCcC
Q 044679 291 GGARFVPCFDCGGSCKV----VL-A-TGDKQRCGVCNEN 323 (333)
Q Consensus 291 gG~rfvpC~~C~GS~K~----~~-~-~~~~~rC~~CNEN 323 (333)
||.-||.|.+|.---.. .+ . +...+||.+|.|-
T Consensus 2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v 40 (46)
T PF11331_consen 2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV 40 (46)
T ss_pred CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence 78899999999754221 12 1 2257999999873
No 290
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=59.88 E-value=16 Score=35.33 Aligned_cols=58 Identities=9% Similarity=0.113 Sum_probs=40.0
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHH----HhCCCcEEEEECCCC--HHH-----HHHHHHHhCCCcceecEEEE
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIF----EVNRVVTDERDVSLH--GQF-----LNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL----~~~gV~yeErDVs~d--~e~-----reELkels~G~~~TvPqVFV 249 (333)
...+++|+.+. |++|.+.--+| +.+|+.+..++++.. +.+ -..+.+.+ | ...+|.+|+
T Consensus 151 ~~gL~fFy~~~------C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~-v~~~Pal~L 219 (256)
T TIGR02739 151 SYGLFFFYRGK------SPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-G-VKYFPALYL 219 (256)
T ss_pred ceeEEEEECCC------CchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-C-CccCceEEE
Confidence 45688888875 99999877766 467999888887643 111 12344455 5 778999986
No 291
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=59.70 E-value=46 Score=27.29 Aligned_cols=54 Identities=9% Similarity=-0.048 Sum_probs=29.7
Q ss_pred CcEEEEE-cccCCCCCCChhHHHHHHHH-------HhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE
Q 044679 185 DGVVIYT-TSLRGVRRTYEDCNRVRSIF-------EVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF 248 (333)
Q Consensus 185 ~kVVIYT-tSlrgiR~tCp~C~~aK~lL-------~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVF 248 (333)
..|++|. .++ |+.|..-..-| ...|+.+.-+..+.....+ .+.+.. ..++|.+.
T Consensus 25 ~~vl~f~~~~~------Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~---~~~~p~~~ 86 (149)
T cd02970 25 PVVVVFYRGFG------CPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGK---FLPFPVYA 86 (149)
T ss_pred CEEEEEECCCC------ChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhc---CCCCeEEE
Confidence 3455555 455 99998743333 3357777777765544433 333333 34567443
No 292
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=59.70 E-value=7.1 Score=46.93 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=32.2
Q ss_pred EEecchhhHhHHHhCcHHHHHHhhhhhc---ccCCccccCCCCcce------------eeCCCCCCccee
Q 044679 253 YVGGVDELTELNESGKLGRMLRSARVEM---GIGRQACEGCGGARF------------VPCFDCGGSCKV 307 (333)
Q Consensus 253 ~IGG~Del~eL~EsGeL~~lLk~~~~~~---g~~~~~C~~CgG~rf------------vpC~~C~GS~K~ 307 (333)
|+|=+|++++++..=...+. .++.... ....+.|+.|.|.|+ ++|..|+|.+..
T Consensus 1574 Y~g~fd~IR~lFA~~~~ak~-rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~ 1642 (1809)
T PRK00635 1574 YFDIAPSLRNFYASLTQAKA-LNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQ 1642 (1809)
T ss_pred hhhhHHHHHHHHhcCHHHHH-cCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCC
Confidence 55566777776654332222 1111111 114677999999986 478888888753
No 293
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.38 E-value=21 Score=32.85 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=54.9
Q ss_pred ccccchhhhhhHHHhhhcccccccccCCCcCCCCCcCCCCCCCCcEEEEEcccCCCCCCChhHHHHHHHHHhC-------
Q 044679 142 VKENIFIVRDRMEREKEGKQAKYEKLIRDPLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN------- 214 (333)
Q Consensus 142 v~~~~fi~rdrl~~~k~g~~~~~~~~~~d~l~~~~~~~pp~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------- 214 (333)
+.--.||+-=.+.+.+.+.+-. ++.|...++.... |.+.--++||.+.. |+||.+.++-+...
T Consensus 5 l~i~Lliis~fl~a~~s~~ek~---s~~~~~~d~ksi~-~~~Kylllmfes~~------C~yC~~~KKd~~~~krlrEyl 74 (182)
T COG2143 5 LLIVLLIISLFLSACKSNNEKR---SNIDVFDDNKSIS-PNDKYLLLMFESNG------CSYCERFKKDLKNVKRLREYL 74 (182)
T ss_pred HHHHHHHHHHHHHHHhCCchhh---hhhhhHHHHHhcC-ccCcEEEEEEcCCC------ChHHHHHHHhhcchHHHHHHH
Confidence 3334444444445544443322 4445555555443 44555678888775 99999887755431
Q ss_pred --CCcEEEEECCCCH------------HHHHHHHHHhCCCcceecEE-EECCE
Q 044679 215 --RVVTDERDVSLHG------------QFLNELKDLFGGETVTVPRV-FIKGR 252 (333)
Q Consensus 215 --gV~yeErDVs~d~------------e~reELkels~G~~~TvPqV-FVdG~ 252 (333)
++.+.++|++... .--+||.... + .++.|.+ |.|++
T Consensus 75 k~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf-~-vrstPtfvFfdk~ 125 (182)
T COG2143 75 KEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF-A-VRSTPTFVFFDKT 125 (182)
T ss_pred hhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHh-c-cccCceEEEEcCC
Confidence 2345555654311 1134677777 6 8888886 55543
No 294
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=59.28 E-value=25 Score=32.86 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 201 YEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 201 Cp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
...+.-+|.+|.-.|++|++.-+.+... -.+++..+ - ...+|.+-|||..|.-.-.+.++
T Consensus 12 RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~-p-fgqlP~l~vDg~~i~QS~AI~Ry 71 (206)
T KOG1695|consen 12 RGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKM-P-FGQLPVLEVDGKKLVQSRAILRY 71 (206)
T ss_pred chhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccC-C-CCCCCEEeECCEeeccHHHHHHH
Confidence 3589999999999999999999987754 23445444 3 67899999999988765554443
No 295
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=58.28 E-value=15 Score=34.76 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcccCCCCCCChhHHHHHHHHH----hCCCcEEEEEC
Q 044679 182 GGSDGVVIYTTSLRGVRRTYEDCNRVRSIFE----VNRVVTDERDV 223 (333)
Q Consensus 182 ~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~----~~gV~yeErDV 223 (333)
.+...|+||+=. .||||+++-.-+. .-+|.+..+.+
T Consensus 116 ~ak~~I~vFtDp------~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 116 DAPRIVYVFADP------NCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CCCeEEEEEECC------CChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 344567777766 4999999866554 32377666653
No 296
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=58.14 E-value=70 Score=30.62 Aligned_cols=83 Identities=16% Similarity=0.131 Sum_probs=55.0
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchh---hH
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDE---LT 261 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~De---l~ 261 (333)
++=|.|.=.-.+....=+|-.+++..|+.+|+.+.+++++..+. +++...+ . -.+.-||||-.. ++
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~--~~Ie~~l-~--------~~d~IyVgGGNTF~LL~ 100 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPL--AAIENKL-M--------KADIIYVGGGNTFNLLQ 100 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCH--HHHHHhh-h--------hccEEEECCchHHHHHH
Confidence 34455554444455556899999999999999999999986642 3344433 1 135567777555 56
Q ss_pred hHHHhCcHHHHHHhhhh
Q 044679 262 ELNESGKLGRMLRSARV 278 (333)
Q Consensus 262 eL~EsGeL~~lLk~~~~ 278 (333)
+|.+.|-+.-+.+....
T Consensus 101 ~lke~gld~iIr~~vk~ 117 (224)
T COG3340 101 ELKETGLDDIIRERVKA 117 (224)
T ss_pred HHHHhCcHHHHHHHHHc
Confidence 77777877666665443
No 297
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=58.13 E-value=33 Score=26.27 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=24.9
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHh--------CCCcEEEEECCCCH-HHHHHHHH
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEV--------NRVVTDERDVSLHG-QFLNELKD 235 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~--------~gV~yeErDVs~d~-e~reELke 235 (333)
++.|.+++ |+.|.+....|.. .++.+..+.++.+. ++++.+++
T Consensus 5 ll~fwa~~------c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~ 56 (95)
T PF13905_consen 5 LLYFWASW------CPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKK 56 (95)
T ss_dssp EEEEE-TT------SHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHT
T ss_pred EEEEECCC------CHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHh
Confidence 56666676 9999987776664 24556666666552 33444433
No 298
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=57.43 E-value=9.8 Score=26.53 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=16.2
Q ss_pred eCCCCCCcceeeecCCccccCCCc
Q 044679 297 PCFDCGGSCKVVLATGDKQRCGVC 320 (333)
Q Consensus 297 pC~~C~GS~K~~~~~~~~~rC~~C 320 (333)
.|+.|+.+.-++....+.+-|+.|
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~~C 25 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCPNC 25 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEETTT
T ss_pred CCcCCcCCceEEcCCCCeEECCCC
Confidence 478887766333334577889988
No 299
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=56.93 E-value=11 Score=37.46 Aligned_cols=36 Identities=28% Similarity=0.803 Sum_probs=22.7
Q ss_pred CCccccCCCC---------------cceeeCCCCCCcceeeecCCccccCCCcCcC
Q 044679 283 GRQACEGCGG---------------ARFVPCFDCGGSCKVVLATGDKQRCGVCNEN 323 (333)
Q Consensus 283 ~~~~C~~CgG---------------~rfvpC~~C~GS~K~~~~~~~~~rC~~CNEN 323 (333)
..+.|..||+ .||+-|+.|+..-.. ...+|+.|.+.
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-----~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-----VRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-----cCccCCCCCCC
Confidence 3557777763 467778887765433 34677777654
No 300
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=56.17 E-value=8 Score=26.01 Aligned_cols=25 Identities=28% Similarity=0.668 Sum_probs=13.4
Q ss_pred CCCCCCcceeeec--CCccccCCCcCc
Q 044679 298 CFDCGGSCKVVLA--TGDKQRCGVCNE 322 (333)
Q Consensus 298 C~~C~GS~K~~~~--~~~~~rC~~CNE 322 (333)
|..|+-.--.+.. .+...+||.|..
T Consensus 8 C~~Cg~~fe~~~~~~~~~~~~CP~Cg~ 34 (41)
T smart00834 8 CEDCGHTFEVLQKISDDPLATCPECGG 34 (41)
T ss_pred cCCCCCEEEEEEecCCCCCCCCCCCCC
Confidence 5555554333321 234677888876
No 301
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=56.08 E-value=29 Score=34.14 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=36.0
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhC---------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN---------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~---------gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
..-+|.|.++| |+.|+.+...|+.. +|.+-.+|++.+. +.. . + ...+|.+++
T Consensus 365 ~~vlv~f~a~w------C~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-----~~~-~-~-i~~~Pt~~~ 425 (462)
T TIGR01130 365 KDVLVEFYAPW------CGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-----VPP-F-E-VEGFPTIKF 425 (462)
T ss_pred CeEEEEEECCC------CHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-----cCC-C-C-ccccCEEEE
Confidence 34567788888 99999887777651 5678888887653 222 3 4 678898865
No 302
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=55.51 E-value=5.1 Score=34.71 Aligned_cols=57 Identities=26% Similarity=0.331 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCcEEEEEC-CCCHHHHHHHHHH------hCCCcceecEEEECCE-EEecchhhHhH
Q 044679 205 NRVRSIFEVNRVVTDERDV-SLHGQFLNELKDL------FGGETVTVPRVFIKGR-YVGGVDELTEL 263 (333)
Q Consensus 205 ~~aK~lL~~~gV~yeErDV-s~d~e~reELkel------s~G~~~TvPqVFVdG~-~IGG~Del~eL 263 (333)
.-+..++.+.|+.-++++- ..++++++.+++- + | ...+|.++|||+ .+-|.+.+..|
T Consensus 124 ~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~-g-v~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 124 DVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQL-G-VFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHT-T-CSSSSEEEETTTEEEESCSSHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHc-C-CcccCEEEECCEEEEECCCCHHHH
Confidence 3467778888876444432 2344444444332 3 5 889999999999 78888876543
No 303
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=55.13 E-value=8.6 Score=30.92 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=15.6
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHh
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEV 213 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~ 213 (333)
..|+.|..++ |+.|......|..
T Consensus 22 ~~vl~F~~~~------C~~C~~~~~~l~~ 44 (123)
T cd03011 22 PVLVYFWATW------CPVCRFTSPTVNQ 44 (123)
T ss_pred EEEEEEECCc------ChhhhhhChHHHH
Confidence 3456666655 9999988666654
No 304
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=54.95 E-value=17 Score=29.81 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECC
Q 044679 182 GGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVS 224 (333)
Q Consensus 182 ~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs 224 (333)
.+...|++|+-.+ ||+|.++...|... .+.+..+++.
T Consensus 4 ~a~~~i~~f~D~~------Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 4 NGDVTIVEFFDYN------CGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCEEEEEEECCC------ChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 3455677777665 99999887766652 2567777753
No 305
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=54.82 E-value=21 Score=29.89 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=28.4
Q ss_pred CCCCCcEEEEEcccCCCCCCChhHHHHHHHH----HhC----CCcEEEEECCCCHH
Q 044679 181 PGGSDGVVIYTTSLRGVRRTYEDCNRVRSIF----EVN----RVVTDERDVSLHGQ 228 (333)
Q Consensus 181 p~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL----~~~----gV~yeErDVs~d~e 228 (333)
|.....|++|+.-. ||+|.++-..| +.+ .|.|..+++-.+..
T Consensus 10 ~~a~~~v~~f~d~~------Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~ 59 (162)
T PF13462_consen 10 PDAPITVTEFFDFQ------CPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKH 59 (162)
T ss_dssp TTTSEEEEEEE-TT------SHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHH
T ss_pred CCCCeEEEEEECCC------CHhHHHHHHHHhhhhhhccCCCceEEEEEEccccch
Confidence 44556788888775 99998774433 443 67799999865543
No 306
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=54.73 E-value=10 Score=44.15 Aligned_cols=44 Identities=36% Similarity=0.868 Sum_probs=31.3
Q ss_pred CCccccCCCCcc-eeeCCCCCCcceeeecCCccccCCCcCc------CCcccCCCCC
Q 044679 283 GRQACEGCGGAR-FVPCFDCGGSCKVVLATGDKQRCGVCNE------NGLVHCPACS 332 (333)
Q Consensus 283 ~~~~C~~CgG~r-fvpC~~C~GS~K~~~~~~~~~rC~~CNE------NGL~rCp~C~ 332 (333)
+...|..||..- ..-|..|+++... ...|+.|+- +|-..||.|-
T Consensus 666 ~~rkCPkCG~~t~~~fCP~CGs~te~------vy~CPsCGaev~~des~a~~CP~CG 716 (1337)
T PRK14714 666 GRRRCPSCGTETYENRCPDCGTHTEP------VYVCPDCGAEVPPDESGRVECPRCD 716 (1337)
T ss_pred EEEECCCCCCccccccCcccCCcCCC------ceeCccCCCccCCCccccccCCCCC
Confidence 356899999753 2489999888633 248888865 3455899885
No 307
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=54.48 E-value=11 Score=31.94 Aligned_cols=24 Identities=17% Similarity=0.559 Sum_probs=12.9
Q ss_pred CccccCCCCc------ceeeCCCCCCccee
Q 044679 284 RQACEGCGGA------RFVPCFDCGGSCKV 307 (333)
Q Consensus 284 ~~~C~~CgG~------rfvpC~~C~GS~K~ 307 (333)
...|..||.. .|..|+.|++....
T Consensus 71 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 71 ELECKDCSHVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEEhhhCCCccccCCccCCcCcCCCCCceE
Confidence 4567777632 23346666655433
No 308
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=54.03 E-value=9.7 Score=26.00 Aligned_cols=27 Identities=26% Similarity=0.700 Sum_probs=19.6
Q ss_pred eeCCCCCCcceeee----cCCccccCCCcCc
Q 044679 296 VPCFDCGGSCKVVL----ATGDKQRCGVCNE 322 (333)
Q Consensus 296 vpC~~C~GS~K~~~----~~~~~~rC~~CNE 322 (333)
+.|..|+..-.+-. .++..+||+.|++
T Consensus 3 i~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~ 33 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEKIPPKGRKVRCSKCGH 33 (36)
T ss_pred EECCCCCCEEeCCHHHCCCCCcEEECCCCCC
Confidence 56888887766543 2457899999975
No 309
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=53.35 E-value=11 Score=32.07 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=31.0
Q ss_pred HHHHHHHHhCCCcEEEEEC-CCCHHHHHHHH------HHhCCCcceecEEEECCEEEecch
Q 044679 205 NRVRSIFEVNRVVTDERDV-SLHGQFLNELK------DLFGGETVTVPRVFIKGRYVGGVD 258 (333)
Q Consensus 205 ~~aK~lL~~~gV~yeErDV-s~d~e~reELk------els~G~~~TvPqVFVdG~~IGG~D 258 (333)
..+.+++...|+..+.++- ..+.++++.+. ... | ...+|.++|||+++-+..
T Consensus 100 ~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~-g-i~gTPt~iInG~~~~~~~ 158 (178)
T cd03019 100 DDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKY-K-ITGVPAFVVNGKYVVNPS 158 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc-C-CCCCCeEEECCEEEEChh
Confidence 4577888888886443321 12223333222 223 4 788999999999865443
No 310
>KOG2767 consensus Translation initiation factor 5 (eIF-5) [Translation, ribosomal structure and biogenesis]
Probab=52.98 E-value=22 Score=36.24 Aligned_cols=58 Identities=22% Similarity=0.483 Sum_probs=39.8
Q ss_pred CCEEEecchhhHhHHHhCcHHHHHHhhhhhcccCCccccCCCCcceeeCCCCCCc-ceeeecC--CccccCCCcCcCCcc
Q 044679 250 KGRYVGGVDELTELNESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGS-CKVVLAT--GDKQRCGVCNENGLV 326 (333)
Q Consensus 250 dG~~IGG~Del~eL~EsGeL~~lLk~~~~~~g~~~~~C~~CgG~rfvpC~~C~GS-~K~~~~~--~~~~rC~~CNENGL~ 326 (333)
+|+||-. -.|+.++|+.||.++=. .||.|..|.-- ...++.. ...+.|-+|.--|.+
T Consensus 71 n~ryiVN-----G~Hd~~KLqdlLdgFIk---------------KFVlC~~C~NPETel~itk~q~i~~~CkACG~r~~~ 130 (400)
T KOG2767|consen 71 NGRYIVN-----GAHEASKLQDLLDGFIK---------------KFVLCPSCENPETELIITKKQTISLKCKACGFRSDM 130 (400)
T ss_pred CCeeeec-----ccccHHHHHHHHHHHHH---------------HheeCcCCCCCceeEEecccchhhhHHHHcCCcccc
Confidence 5666522 23678899999998765 48888888776 3333332 357899999877765
Q ss_pred c
Q 044679 327 H 327 (333)
Q Consensus 327 r 327 (333)
.
T Consensus 131 d 131 (400)
T KOG2767|consen 131 D 131 (400)
T ss_pred c
Confidence 3
No 311
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=51.22 E-value=24 Score=30.98 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=30.2
Q ss_pred hCcHHHHHHhhhhhcccCCccccCCCCcceeeCCCCCCcceeeecC-Cc-cccCCCcCcCCcc
Q 044679 266 SGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLAT-GD-KQRCGVCNENGLV 326 (333)
Q Consensus 266 sGeL~~lLk~~~~~~g~~~~~C~~CgG~rfvpC~~C~GS~K~~~~~-~~-~~rC~~CNENGL~ 326 (333)
...|+.+|..+=. .||.|..|+-.--.+..+ +. +++|-+|..-+-+
T Consensus 83 ~~~i~~~L~~yI~---------------~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~~~v 130 (133)
T TIGR00311 83 HFLLNERIEDYVR---------------KYVICRECNRPDTRIIKEGRVSLLKCEACGAKAPL 130 (133)
T ss_pred HHHHHHHHHHHHh---------------heEECCCCCCCCcEEEEeCCeEEEecccCCCCCcc
Confidence 3456667665443 389999999885444433 33 6899999765433
No 312
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=51.20 E-value=70 Score=25.18 Aligned_cols=23 Identities=4% Similarity=0.317 Sum_probs=15.9
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHh
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEV 213 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~ 213 (333)
.-|+.|..+| |+.|++....|++
T Consensus 23 ~vvl~F~~~w------C~~C~~~~p~l~~ 45 (114)
T cd02967 23 PTLLFFLSPT------CPVCKKLLPVIRS 45 (114)
T ss_pred eEEEEEECCC------CcchHhHhHHHHH
Confidence 3456666666 9999977666654
No 313
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=51.13 E-value=44 Score=30.93 Aligned_cols=68 Identities=13% Similarity=-0.042 Sum_probs=49.7
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECC--CCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVS--LHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELT 261 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs--~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~ 261 (333)
++++|+... -+.|+++...++..|+.|+.+.|+ .......++.++. - ..+||.+.-+|-.+=....|.
T Consensus 2 ~~~ly~~~~------s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~n-P-~~kVP~l~d~~~~l~eS~AI~ 71 (226)
T KOG0867|consen 2 KLKLYGHLG------SPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLN-P-LGKVPALEDGGLTLWESHAIL 71 (226)
T ss_pred CceEeecCC------CcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcC-c-CCCCCeEecCCeEEeeHHHHH
Confidence 467888886 578999999999999999988554 3344455666654 3 779999888877666554443
No 314
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=49.71 E-value=94 Score=23.27 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=23.1
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHH----hC---CCcEEEEECCCC
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFE----VN---RVVTDERDVSLH 226 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~----~~---gV~yeErDVs~d 226 (333)
-+++|..++ |+.|.+....|. .+ ++.+.-++++.+
T Consensus 22 ~ll~f~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 22 VLVNFWASW------CPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred EEEEeeccc------ChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 456666665 999986554444 33 567778888764
No 315
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.37 E-value=30 Score=32.50 Aligned_cols=74 Identities=20% Similarity=0.236 Sum_probs=48.8
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECC--CC-HHHHHHHHHHhCCCcceecEEEECCEEEecchhhH
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVS--LH-GQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELT 261 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs--~d-~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~ 261 (333)
.+-++|+- | |..|.+ +||-.|.-+||+|+.+-|+ .+ .++-.++++.. - ..+||.+.|||..|-..-.+.
T Consensus 4 ~KpiLYSY-W---rSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iN-P-m~kVP~L~i~g~tl~eS~AII 75 (217)
T KOG0868|consen 4 AKPILYSY-W---RSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEIN-P-MEKVPTLVIDGLTLTESLAII 75 (217)
T ss_pred ccchhhhh-h---cccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcC-c-hhhCCeEEECCEEeehHHHHH
Confidence 34566652 2 334654 6777777788887776654 23 44555788875 3 789999999999887765555
Q ss_pred hHHHh
Q 044679 262 ELNES 266 (333)
Q Consensus 262 eL~Es 266 (333)
+..++
T Consensus 76 ~YLeE 80 (217)
T KOG0868|consen 76 EYLEE 80 (217)
T ss_pred HHHHh
Confidence 55443
No 316
>PTZ00102 disulphide isomerase; Provisional
Probab=48.49 E-value=31 Score=34.49 Aligned_cols=54 Identities=7% Similarity=0.215 Sum_probs=35.6
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN--------RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~--------gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
..-+|.|..+| |++|+.+...|+.. .+.+..+|.+.+... .... + ...+|.+++
T Consensus 376 k~vlv~f~a~w------C~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~-~-v~~~Pt~~~ 437 (477)
T PTZ00102 376 KDVLLEIYAPW------CGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEF-S-WSAFPTILF 437 (477)
T ss_pred CCEEEEEECCC------CHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcC-C-CcccCeEEE
Confidence 34566777777 99999988877652 255777887765432 2223 4 677898753
No 317
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=48.33 E-value=12 Score=33.02 Aligned_cols=30 Identities=40% Similarity=0.971 Sum_probs=18.2
Q ss_pred eeeCCCCCCcceeeecCCccccCCCcC------------cCCcccCCCCC
Q 044679 295 FVPCFDCGGSCKVVLATGDKQRCGVCN------------ENGLVHCPACS 332 (333)
Q Consensus 295 fvpC~~C~GS~K~~~~~~~~~rC~~CN------------ENGL~rCp~C~ 332 (333)
...|..|+|.++++ |..|| +.+..||+.|.
T Consensus 99 ~~~C~~Cgg~rfv~--------C~~C~Gs~k~~~~~~~~~~~~~rC~~Cn 140 (147)
T cd03031 99 GGVCEGCGGARFVP--------CSECNGSCKVFAENATAAGGFLRCPECN 140 (147)
T ss_pred CCCCCCCCCcCeEE--------CCCCCCcceEEeccCcccccEEECCCCC
Confidence 34588888776554 33332 35577888874
No 318
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=47.47 E-value=22 Score=32.24 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCcEEEEECC-CCHHHHHH------HHHHhCCCcceecEEEECCEEEecchh
Q 044679 205 NRVRSIFEVNRVVTDERDVS-LHGQFLNE------LKDLFGGETVTVPRVFIKGRYVGGVDE 259 (333)
Q Consensus 205 ~~aK~lL~~~gV~yeErDVs-~d~e~reE------Lkels~G~~~TvPqVFVdG~~IGG~De 259 (333)
..++.++...|+.-++++-. .+..+++. +.+.. | ...+|.++|||+|+-+...
T Consensus 124 ~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~-g-I~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 124 ADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL-Q-LRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHc-C-CCCCCEEEECCEEEEcccc
Confidence 35777888888874433311 12222222 22334 5 7899999999999766554
No 319
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=47.41 E-value=81 Score=26.88 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=40.0
Q ss_pred CCcEEEEEc--ccCCCCCCCh---hHHHHHHHHHh-C-CCcEEEEECCCCHH-HHHHHHHHhCCCcc--eecEE--EECC
Q 044679 184 SDGVVIYTT--SLRGVRRTYE---DCNRVRSIFEV-N-RVVTDERDVSLHGQ-FLNELKDLFGGETV--TVPRV--FIKG 251 (333)
Q Consensus 184 ~~kVVIYTt--SlrgiR~tCp---~C~~aK~lL~~-~-gV~yeErDVs~d~e-~reELkels~G~~~--TvPqV--FVdG 251 (333)
..-+|.|.. +| |. +|.++-.-+.. . .|.+-++|++...+ --.+|.++. | .. .+|+| |.+|
T Consensus 19 ~~vlV~F~A~~Pw------c~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y-~-I~~~gyPTl~lF~~g 90 (116)
T cd03007 19 KYSLVKFDTAYPY------GEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERY-K-LDKESYPVIYLFHGG 90 (116)
T ss_pred CcEEEEEeCCCCC------CCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHh-C-CCcCCCCEEEEEeCC
Confidence 345789999 66 55 88887655543 2 47788999853221 225677777 6 66 89987 5666
Q ss_pred E
Q 044679 252 R 252 (333)
Q Consensus 252 ~ 252 (333)
.
T Consensus 91 ~ 91 (116)
T cd03007 91 D 91 (116)
T ss_pred C
Confidence 3
No 320
>PRK12495 hypothetical protein; Provisional
Probab=47.30 E-value=25 Score=33.58 Aligned_cols=13 Identities=31% Similarity=0.889 Sum_probs=10.5
Q ss_pred CCccccCCCCcce
Q 044679 283 GRQACEGCGGARF 295 (333)
Q Consensus 283 ~~~~C~~CgG~rf 295 (333)
....|..||.--|
T Consensus 41 sa~hC~~CG~PIp 53 (226)
T PRK12495 41 TNAHCDECGDPIF 53 (226)
T ss_pred chhhcccccCccc
Confidence 5678999998766
No 321
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=47.19 E-value=37 Score=32.73 Aligned_cols=58 Identities=7% Similarity=0.064 Sum_probs=38.4
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHH----hCCCcEEEEECCC--CHHH-----HHHHHHHhCCCcceecEEEE
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFE----VNRVVTDERDVSL--HGQF-----LNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~----~~gV~yeErDVs~--d~e~-----reELkels~G~~~TvPqVFV 249 (333)
...++.|+.+. |++|.+.--+|+ .+|+.+.-+.++- .+.+ -....+.+ | ...+|.+|+
T Consensus 144 ~~GL~fFy~s~------Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~-v~~~PAl~L 212 (248)
T PRK13703 144 HYGLMFFYRGQ------DPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRL-G-VKYFPALML 212 (248)
T ss_pred cceEEEEECCC------CchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhc-C-CcccceEEE
Confidence 45688888874 999998766665 5788888777753 1121 11222344 5 778999986
No 322
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=46.38 E-value=85 Score=27.50 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=46.8
Q ss_pred CCCcCCCCCcCCCCCCCCcEEEEEcccCCCCCCChhHHHHHHHHH----hCC---CcEEEEECCCCHHHHHHHHHHhCCC
Q 044679 168 IRDPLSDFPEKCPPGGSDGVVIYTTSLRGVRRTYEDCNRVRSIFE----VNR---VVTDERDVSLHGQFLNELKDLFGGE 240 (333)
Q Consensus 168 ~~d~l~~~~~~~pp~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~----~~g---V~yeErDVs~d~e~reELkels~G~ 240 (333)
..+.+.+|... .+..|||..+- +. .++.+..+--+|. .++ +.+-.+|++.+++ |...+ |
T Consensus 23 ~~~~~~~~~~~-----~~~~vl~~~gd-p~--r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~----LA~~f-g- 88 (132)
T PRK11509 23 SESRLDDWLTQ-----APDGVVLLSSD-PK--RTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA----IGDRF-G- 88 (132)
T ss_pred ccccHHHHHhC-----CCcEEEEeCCC-CC--cCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH----HHHHc-C-
Confidence 33556666532 23455555543 22 3555554444443 333 7788999988865 45556 6
Q ss_pred cceecEE--EECCEEEecchh
Q 044679 241 TVTVPRV--FIKGRYVGGVDE 259 (333)
Q Consensus 241 ~~TvPqV--FVdG~~IGG~De 259 (333)
..++|.+ |-||+++|-..-
T Consensus 89 V~siPTLl~FkdGk~v~~i~G 109 (132)
T PRK11509 89 VFRFPATLVFTGGNYRGVLNG 109 (132)
T ss_pred CccCCEEEEEECCEEEEEEeC
Confidence 8899997 559998875543
No 323
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=46.19 E-value=67 Score=25.88 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=39.8
Q ss_pred CChhHHHHHHHHHhCCC--cEEEEECCCCHHH--HHHHHHHhCCCcceecEEEECCE-EEecchhhHhHHHh
Q 044679 200 TYEDCNRVRSIFEVNRV--VTDERDVSLHGQF--LNELKDLFGGETVTVPRVFIKGR-YVGGVDELTELNES 266 (333)
Q Consensus 200 tCp~C~~aK~lL~~~gV--~yeErDVs~d~e~--reELkels~G~~~TvPqVFVdG~-~IGG~Del~eL~Es 266 (333)
.|+.|....+++..+.. .+..+|+...... .+.. .+......+.-.+.-+|+ ...|.+.+.++...
T Consensus 6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASY-GISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhc-CcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 39999999999999875 5888888433321 1110 000000122233323776 88999998887665
No 324
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=46.04 E-value=12 Score=40.20 Aligned_cols=130 Identities=18% Similarity=0.290 Sum_probs=76.6
Q ss_pred EEEEcccCCCCCCChhHHHHHHHHHhCCCc--EEEEECCCC----H-------HHHHHHHHHh---C----CCcceecEE
Q 044679 188 VIYTTSLRGVRRTYEDCNRVRSIFEVNRVV--TDERDVSLH----G-------QFLNELKDLF---G----GETVTVPRV 247 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~aK~lL~~~gV~--yeErDVs~d----~-------e~reELkels---~----G~~~TvPqV 247 (333)
||+.-..+ ..+-|+.++.+|+...-. |...|+..+ . ++|+-|..+- . .....+++-
T Consensus 384 Vl~~WDf~----~y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v~~lR~qL~~m~~~l~~Cr~a~~~~~~~~ 459 (580)
T KOG1829|consen 384 VLHNWDFT----KYPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEVKELRQQLQHIEGYLKTCRFASLKLLRQR 459 (580)
T ss_pred ceecccCc----ccccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 56666653 467899999999986433 444444322 1 2222222211 0 101445565
Q ss_pred EECCEEEecchhhHhH-----HHhCcHHHHHHhhhhhcccCCccccCCCCcceeeCCCCCCcceeeec-CCccccCCCcC
Q 044679 248 FIKGRYVGGVDELTEL-----NESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLA-TGDKQRCGVCN 321 (333)
Q Consensus 248 FVdG~~IGG~Del~eL-----~EsGeL~~lLk~~~~~~g~~~~~C~~CgG~rfvpC~~C~GS~K~~~~-~~~~~rC~~CN 321 (333)
+..-+||---.++..| .++|.|..+|+.+-+..-..-..|.-|-+.+|+ |..|....-+|=- .....||..|+
T Consensus 460 ~~~~~yL~e~~~~~Sl~DL~~i~~g~L~~~l~~~~k~~~~HV~~C~lC~~~gfi-Ce~Cq~~~iiyPF~~~~~~rC~~C~ 538 (580)
T KOG1829|consen 460 LAVRRYLTESPHLFSLKDLQDIQDGALLRLLNELTKLSSKHVKECDLCTGKGFI-CELCQHNDIIYPFETRNTRRCSTCL 538 (580)
T ss_pred hhhhhhhccCchhhhhhhHHHhhcccHHHHHHHHHHHhhhhhhhchhhccCeee-eeeccCCCcccccccccceeHHHHH
Confidence 6555555433333322 467888888877655432234569999999998 9999666666532 44678888775
Q ss_pred c
Q 044679 322 E 322 (333)
Q Consensus 322 E 322 (333)
-
T Consensus 539 a 539 (580)
T KOG1829|consen 539 A 539 (580)
T ss_pred H
Confidence 3
No 325
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=45.84 E-value=48 Score=28.59 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCcEEEEECCCC
Q 044679 204 CNRVRSIFEVNRVVTDERDVSLH 226 (333)
Q Consensus 204 C~~aK~lL~~~gV~yeErDVs~d 226 (333)
=.++++.|+++|+.++.+|+...
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~ 24 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDR 24 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSC
T ss_pred HHHHHHHHHHCCCEEEEEeccCC
Confidence 36789999999999999998774
No 326
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=44.63 E-value=62 Score=28.94 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=33.8
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHH----HhCCCcEEEEECCCCHHHHHHHHH----------------HhCCCcceecE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIF----EVNRVVTDERDVSLHGQFLNELKD----------------LFGGETVTVPR 246 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL----~~~gV~yeErDVs~d~e~reELke----------------ls~G~~~TvPq 246 (333)
|+.|.++| |+.|++....| +..++.+.-+..+...+.++.+++ .+ | ...+|.
T Consensus 78 vl~F~atw------Cp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y-~-v~~~P~ 149 (189)
T TIGR02661 78 LLMFTAPS------CPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAF-Q-VGKIPY 149 (189)
T ss_pred EEEEECCC------ChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhc-c-CCccce
Confidence 45566665 99998754433 455777666654433333333322 22 3 566898
Q ss_pred EEE---CCEEE
Q 044679 247 VFI---KGRYV 254 (333)
Q Consensus 247 VFV---dG~~I 254 (333)
.|+ +|+.+
T Consensus 150 ~~lID~~G~I~ 160 (189)
T TIGR02661 150 GVLLDQDGKIR 160 (189)
T ss_pred EEEECCCCeEE
Confidence 776 46654
No 327
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=44.47 E-value=12 Score=25.26 Aligned_cols=23 Identities=35% Similarity=0.829 Sum_probs=10.1
Q ss_pred CCCCCCcceeeecCCccccCCCcC
Q 044679 298 CFDCGGSCKVVLATGDKQRCGVCN 321 (333)
Q Consensus 298 C~~C~GS~K~~~~~~~~~rC~~CN 321 (333)
|..|+|.. ++..+.+-+.|..|.
T Consensus 6 C~~C~~~~-i~~~~~~~~~C~~Cg 28 (33)
T PF08792_consen 6 CSKCGGNG-IVNKEDDYEVCIFCG 28 (33)
T ss_pred cCCCCCCe-EEEecCCeEEcccCC
Confidence 44444443 222333445555554
No 328
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=44.17 E-value=50 Score=30.78 Aligned_cols=67 Identities=22% Similarity=0.347 Sum_probs=33.8
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhC----CCcEEE-----------EECCCCHHH---HHHHHHHhCCCcceecEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVN----RVVTDE-----------RDVSLHGQF---LNELKDLFGGETVTVPRVF 248 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~----gV~yeE-----------rDVs~d~e~---reELkels~G~~~TvPqVF 248 (333)
|-|||+.+ |.-|--|-++|..+ +|-.-- .|-...+++ ++...+..+....-.||++
T Consensus 2 VELFTSQG------CsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v 75 (202)
T PF06764_consen 2 VELFTSQG------CSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV 75 (202)
T ss_dssp EEEEE-TT-------TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred eeEecCCC------CCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence 56899996 88998888888764 232111 233334444 2233344422245569999
Q ss_pred ECCE-EEecchh
Q 044679 249 IKGR-YVGGVDE 259 (333)
Q Consensus 249 VdG~-~IGG~De 259 (333)
|||+ +++|.+.
T Consensus 76 VnG~~~~~g~~~ 87 (202)
T PF06764_consen 76 VNGREHRVGSDR 87 (202)
T ss_dssp ETTTEEEETT-H
T ss_pred ECCeeeeeccCH
Confidence 9996 5667653
No 329
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=43.90 E-value=23 Score=25.03 Aligned_cols=24 Identities=33% Similarity=0.778 Sum_probs=14.8
Q ss_pred CCCCCCcceeeecCCccccCCCcC
Q 044679 298 CFDCGGSCKVVLATGDKQRCGVCN 321 (333)
Q Consensus 298 C~~C~GS~K~~~~~~~~~rC~~CN 321 (333)
|+.|+..+-..+.+....+|.+|.
T Consensus 21 CP~Cg~~~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 21 CPHCGSTKHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCeeeEEeCCCCeEECCCCC
Confidence 788877633334444667777775
No 330
>PF04783 DUF630: Protein of unknown function (DUF630); InterPro: IPR006868 This region is sometimes found at the N terminus of putative plant bZIP proteins IPR006867 from INTERPRO. The function of this conserved region is not known.
Probab=43.88 E-value=9.9 Score=29.25 Aligned_cols=8 Identities=63% Similarity=1.119 Sum_probs=7.0
Q ss_pred CCCCcccc
Q 044679 1 MGCASSKR 8 (333)
Q Consensus 1 mgc~~sk~ 8 (333)
|||+.||-
T Consensus 1 MGC~~SK~ 8 (60)
T PF04783_consen 1 MGCSQSKL 8 (60)
T ss_pred CCCCcccc
Confidence 89999994
No 331
>PLN02189 cellulose synthase
Probab=43.82 E-value=12 Score=42.58 Aligned_cols=39 Identities=36% Similarity=0.765 Sum_probs=26.1
Q ss_pred CCccccCCCCc--------ceeeCCCCCCc----ceeeecCCccccCCCcC
Q 044679 283 GRQACEGCGGA--------RFVPCFDCGGS----CKVVLATGDKQRCGVCN 321 (333)
Q Consensus 283 ~~~~C~~CgG~--------rfvpC~~C~GS----~K~~~~~~~~~rC~~CN 321 (333)
....|..||+. -||.|..|+=- |--+.++.+...||+|+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCk 83 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCK 83 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccC
Confidence 46789999987 89999999543 22233334556666665
No 332
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=43.67 E-value=83 Score=26.06 Aligned_cols=45 Identities=16% Similarity=0.082 Sum_probs=31.1
Q ss_pred CcEEEEEcc-cCCCCCCChhHHHHHH----H---HHhCCCcEEEEECCCCHHHHHHHHH
Q 044679 185 DGVVIYTTS-LRGVRRTYEDCNRVRS----I---FEVNRVVTDERDVSLHGQFLNELKD 235 (333)
Q Consensus 185 ~kVVIYTtS-lrgiR~tCp~C~~aK~----l---L~~~gV~yeErDVs~d~e~reELke 235 (333)
.-||.|..+ | |+.|....- + +...++.+..+.+..+...++.+.+
T Consensus 30 ~~vv~f~~~~~------Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~ 82 (146)
T PF08534_consen 30 PVVVNFWASAW------CPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK 82 (146)
T ss_dssp EEEEEEESTTT------SHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred eEEEEEEccCC------CCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence 346666666 6 999985543 2 3446799999998888876665554
No 333
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=43.67 E-value=22 Score=31.36 Aligned_cols=33 Identities=24% Similarity=0.600 Sum_probs=23.6
Q ss_pred ceeeCCCCCCcceeeecCC--ccccCCCcCcCCcc
Q 044679 294 RFVPCFDCGGSCKVVLATG--DKQRCGVCNENGLV 326 (333)
Q Consensus 294 rfvpC~~C~GS~K~~~~~~--~~~rC~~CNENGL~ 326 (333)
.||.|..|+-.--.+..++ -+++|-+|....-+
T Consensus 101 ~yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~~V 135 (138)
T PRK03988 101 EYVICPECGSPDTKLIKEGRIWVLKCEACGAETPV 135 (138)
T ss_pred hcEECCCCCCCCcEEEEcCCeEEEEcccCCCCCcC
Confidence 3899999988855554433 38999999865543
No 334
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=42.88 E-value=84 Score=28.72 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=48.9
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHhH
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTEL 263 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~eL 263 (333)
..=|+|..+-...+ =.+-..+++.|+.+ |+.+..+++..+++..+.|.+.. .||+.| |....+.+.
T Consensus 31 ~~~i~~IptAs~~~--~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad--------~I~l~G---G~~~~~~~~ 97 (212)
T cd03146 31 RPKVLFVPTASGDR--DEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEAD--------VIYVGG---GNTFNLLAQ 97 (212)
T ss_pred CCeEEEECCCCCCH--HHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCC--------EEEECC---chHHHHHHH
Confidence 33444544433221 25788899999999 99999888765555455554432 467777 555555444
Q ss_pred HHhCcHHHHHHhh
Q 044679 264 NESGKLGRMLRSA 276 (333)
Q Consensus 264 ~EsGeL~~lLk~~ 276 (333)
.+.-.|.++|+.+
T Consensus 98 l~~~~l~~~l~~~ 110 (212)
T cd03146 98 WREHGLDAILKAA 110 (212)
T ss_pred HHHcCHHHHHHHH
Confidence 4444677777764
No 335
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=42.71 E-value=35 Score=27.62 Aligned_cols=55 Identities=13% Similarity=0.157 Sum_probs=32.5
Q ss_pred cEEEEEcccCCCCCCChhHHHHHH-HHHhCCCc--------EEEEECCCCHHHHHHHHHHhCCCcceecEE-EE
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRS-IFEVNRVV--------TDERDVSLHGQFLNELKDLFGGETVTVPRV-FI 249 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~-lL~~~gV~--------yeErDVs~d~e~reELkels~G~~~TvPqV-FV 249 (333)
.++||..+- .|++|+.+.+ +|....|. +-..|+.. ++. ..|...+ + ...+|.+ ||
T Consensus 19 ~llv~~~~~-----~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~-~~~~~~~-~-~~~~P~~~~i 83 (114)
T cd02958 19 WLLVYLQSE-----DEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEG-QRFLQSY-K-VDKYPHIAII 83 (114)
T ss_pred eEEEEEecC-----CcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccH-HHHHHHh-C-ccCCCeEEEE
Confidence 466666664 4999998644 45443222 34456654 233 3455666 5 7789987 45
No 336
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=42.33 E-value=19 Score=30.61 Aligned_cols=28 Identities=21% Similarity=0.603 Sum_probs=20.7
Q ss_pred ceeeCCCCCCcceeeec-CC-ccccCCCcC
Q 044679 294 RFVPCFDCGGSCKVVLA-TG-DKQRCGVCN 321 (333)
Q Consensus 294 rfvpC~~C~GS~K~~~~-~~-~~~rC~~CN 321 (333)
.||.|..|+-.--.+.. ++ -+++|-+|.
T Consensus 79 ~yVlC~~C~spdT~l~k~~r~~~l~C~aCG 108 (110)
T smart00653 79 EYVLCPECGSPDTELIKENRLFFLKCEACG 108 (110)
T ss_pred hcEECCCCCCCCcEEEEeCCeEEEEccccC
Confidence 38999999988555443 33 489999996
No 337
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=41.72 E-value=20 Score=23.97 Aligned_cols=27 Identities=41% Similarity=0.893 Sum_probs=17.6
Q ss_pred eeCCCCCCcceeeec----CCccccCCCcCc
Q 044679 296 VPCFDCGGSCKVVLA----TGDKQRCGVCNE 322 (333)
Q Consensus 296 vpC~~C~GS~K~~~~----~~~~~rC~~CNE 322 (333)
+.|+.|+..-++-.+ ++..++|+.|..
T Consensus 3 ~~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~ 33 (38)
T TIGR02098 3 IQCPNCKTSFRVVDSQLGANGGKVRCGKCGH 33 (38)
T ss_pred EECCCCCCEEEeCHHHcCCCCCEEECCCCCC
Confidence 568888877665432 234678888865
No 338
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=40.92 E-value=83 Score=24.93 Aligned_cols=45 Identities=9% Similarity=0.001 Sum_probs=26.2
Q ss_pred CcEEEEEcc-cCCCCCCChhHHHHHHHH-------HhCCCcEEEEECCCCHHHHHHHHH
Q 044679 185 DGVVIYTTS-LRGVRRTYEDCNRVRSIF-------EVNRVVTDERDVSLHGQFLNELKD 235 (333)
Q Consensus 185 ~kVVIYTtS-lrgiR~tCp~C~~aK~lL-------~~~gV~yeErDVs~d~e~reELke 235 (333)
..|+.|..+ + |+.|.....-| +..++.+..+..+...+.++.+++
T Consensus 27 ~~vl~f~~~~~------c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 27 PVVLFFWPTAW------CPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp EEEEEEESTTT------SHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred cEEEEEeCccC------ccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 345555555 4 99996444333 345777888887655545444443
No 339
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=40.83 E-value=26 Score=26.61 Aligned_cols=34 Identities=18% Similarity=0.569 Sum_probs=25.7
Q ss_pred cceeeCCCCCCcceeeecCCc-----cccCCCcCcCCcc
Q 044679 293 ARFVPCFDCGGSCKVVLATGD-----KQRCGVCNENGLV 326 (333)
Q Consensus 293 ~rfvpC~~C~GS~K~~~~~~~-----~~rC~~CNENGL~ 326 (333)
.+++.|+.|++..++-++... -+-||.|..--||
T Consensus 2 ~~Wi~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~EtlI 40 (55)
T PF14205_consen 2 SEWILCPICGNKTRLKIREDTVLKNFPLYCPKCKQETLI 40 (55)
T ss_pred CeEEECCCCCCccceeeecCceeccccccCCCCCceEEE
Confidence 368999999999888776653 4779988765544
No 340
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=40.30 E-value=19 Score=39.12 Aligned_cols=13 Identities=38% Similarity=0.963 Sum_probs=7.2
Q ss_pred eeCCCCCCcceee
Q 044679 296 VPCFDCGGSCKVV 308 (333)
Q Consensus 296 vpC~~C~GS~K~~ 308 (333)
+||..|.|.-++-
T Consensus 54 ~pc~~c~gkG~V~ 66 (715)
T COG1107 54 IPCPKCRGKGTVT 66 (715)
T ss_pred CCCCeeccceeEE
Confidence 4666666655443
No 341
>PLN02436 cellulose synthase A
Probab=39.86 E-value=16 Score=41.92 Aligned_cols=39 Identities=31% Similarity=0.755 Sum_probs=26.5
Q ss_pred CCccccCCCCc--------ceeeCCCCCCc-cee---eecCCccccCCCcC
Q 044679 283 GRQACEGCGGA--------RFVPCFDCGGS-CKV---VLATGDKQRCGVCN 321 (333)
Q Consensus 283 ~~~~C~~CgG~--------rfvpC~~C~GS-~K~---~~~~~~~~rC~~CN 321 (333)
....|..||+. =||.|-.|+=. |+. +.++.+...||+|+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqck 85 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccC
Confidence 46799999987 79999999644 333 23334556666665
No 342
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=39.83 E-value=1.1e+02 Score=24.85 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=21.0
Q ss_pred ChhHHHH-------HHHHHhCCCcEEEEECCCCHHHHHHHHH
Q 044679 201 YEDCNRV-------RSIFEVNRVVTDERDVSLHGQFLNELKD 235 (333)
Q Consensus 201 Cp~C~~a-------K~lL~~~gV~yeErDVs~d~e~reELke 235 (333)
|+.|... ..-|...++.+.-+.++....+++.+++
T Consensus 36 cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 36 TPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 8899753 3334456787777777655555544443
No 343
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=39.41 E-value=96 Score=33.03 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=16.3
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHh
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEV 213 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~ 213 (333)
-||-|..+| |+.|++..-.|+.
T Consensus 59 VvV~FWATW------CppCk~emP~L~e 80 (521)
T PRK14018 59 TLIKFWASW------CPLCLSELGETEK 80 (521)
T ss_pred EEEEEEcCC------CHHHHHHHHHHHH
Confidence 366677777 9999997766654
No 344
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=39.15 E-value=51 Score=28.02 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECC
Q 044679 182 GGSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVS 224 (333)
Q Consensus 182 ~~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs 224 (333)
.+...|++|+--. ||+|.++...+... +|.|..+.+.
T Consensus 14 ~~~~~i~~f~D~~------Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYG------CPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCC------CcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 3455677777664 99999877766532 5666666654
No 345
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=38.95 E-value=29 Score=29.28 Aligned_cols=21 Identities=33% Similarity=0.689 Sum_probs=11.3
Q ss_pred CccccCCCCc------ceeeCCCCCCc
Q 044679 284 RQACEGCGGA------RFVPCFDCGGS 304 (333)
Q Consensus 284 ~~~C~~CgG~------rfvpC~~C~GS 304 (333)
...|..||-. .+..|+.|++.
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 70 ECWCETCQQYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred EEEcccCCCeeecCCccCCcCcCcCCC
Confidence 4567777642 22446666544
No 346
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=38.94 E-value=23 Score=24.68 Aligned_cols=29 Identities=34% Similarity=0.628 Sum_probs=17.7
Q ss_pred ceeeCCCCCCc-ceeeecC--CccccCCCcCc
Q 044679 294 RFVPCFDCGGS-CKVVLAT--GDKQRCGVCNE 322 (333)
Q Consensus 294 rfvpC~~C~GS-~K~~~~~--~~~~rC~~CNE 322 (333)
+-+||+.|.|+ ++.+.+. .+.--|..|+.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~~Cg~ 33 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCSVCGA 33 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeCCCCC
Confidence 35789999887 4444332 14556667754
No 347
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=38.59 E-value=15 Score=42.03 Aligned_cols=39 Identities=33% Similarity=0.755 Sum_probs=26.4
Q ss_pred CCccccCCCCc--------ceeeCCCCCCc-cee---eecCCccccCCCcC
Q 044679 283 GRQACEGCGGA--------RFVPCFDCGGS-CKV---VLATGDKQRCGVCN 321 (333)
Q Consensus 283 ~~~~C~~CgG~--------rfvpC~~C~GS-~K~---~~~~~~~~rC~~CN 321 (333)
.+..|..||+. =||.|-.|+=. ||. +.++.+..-||.|+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCk 66 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 66 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccC
Confidence 46789999987 89999999643 333 23334556666665
No 348
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=38.54 E-value=18 Score=31.29 Aligned_cols=44 Identities=20% Similarity=0.451 Sum_probs=31.7
Q ss_pred HHhCcHHHHHHhhhhhcccCCccccCCCCcceeeCCCCCCcceeeecCC--ccccCCCcCc
Q 044679 264 NESGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLATG--DKQRCGVCNE 322 (333)
Q Consensus 264 ~EsGeL~~lLk~~~~~~g~~~~~C~~CgG~rfvpC~~C~GS~K~~~~~~--~~~rC~~CNE 322 (333)
|....|+.+|..+=. .||.|..|+..--.+..++ -+++|-+|..
T Consensus 77 ~~~~~i~~~L~~fI~---------------~yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 122 (125)
T PF01873_consen 77 FSSKQIQDLLDKFIK---------------EYVLCPECGSPDTELIKEGRLIFLKCKACGA 122 (125)
T ss_dssp SSCCHHHHHHHHHHC---------------HHSSCTSTSSSSEEEEEETTCCEEEETTTSC
T ss_pred cCHHHHHHHHHHHHH---------------HEEEcCCCCCCccEEEEcCCEEEEEecccCC
Confidence 455678888877654 3789999998865554333 5899999975
No 349
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=38.50 E-value=16 Score=41.46 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=20.0
Q ss_pred CCccccCCCCcce------------eeCCCCCCccee
Q 044679 283 GRQACEGCGGARF------------VPCFDCGGSCKV 307 (333)
Q Consensus 283 ~~~~C~~CgG~rf------------vpC~~C~GS~K~ 307 (333)
+.+.|..|.|.++ ++|..|+|.+..
T Consensus 737 ~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~ 773 (943)
T PRK00349 737 KGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYN 773 (943)
T ss_pred CCCCCCcccccceEEEEeccCCCccccCccccCcccc
Confidence 4678999999875 479999998754
No 350
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=38.33 E-value=1.7e+02 Score=27.53 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=52.7
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-------------------HHHHHHHHHhCCCcce
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHG-------------------QFLNELKDLFGGETVT 243 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~-------------------e~reELkels~G~~~T 243 (333)
..++|+||.--. ---.+..++|+..+.-+-.+|++.++ .+.++.-+.+ + ...
T Consensus 2 sagrVivYGGkG-------ALGSacv~~FkannywV~siDl~eNe~Ad~sI~V~~~~swtEQe~~v~~~vg~sL-~-gek 72 (236)
T KOG4022|consen 2 SAGRVIVYGGKG-------ALGSACVEFFKANNYWVLSIDLSENEQADSSILVDGNKSWTEQEQSVLEQVGSSL-Q-GEK 72 (236)
T ss_pred CCceEEEEcCcc-------hHhHHHHHHHHhcCeEEEEEeecccccccceEEecCCcchhHHHHHHHHHHHHhh-c-ccc
Confidence 357899998664 23445567899999888888875432 1223333444 3 344
Q ss_pred ecEEE-ECCEEEecchhhHhHHHhCcHH
Q 044679 244 VPRVF-IKGRYVGGVDELTELNESGKLG 270 (333)
Q Consensus 244 vPqVF-VdG~~IGG~Del~eL~EsGeL~ 270 (333)
|--|| |.|-+-||...-+.|.++-+|.
T Consensus 73 vDav~CVAGGWAGGnAksKdl~KNaDLM 100 (236)
T KOG4022|consen 73 VDAVFCVAGGWAGGNAKSKDLVKNADLM 100 (236)
T ss_pred cceEEEeeccccCCCcchhhhhhchhhH
Confidence 55554 8888999988888888887763
No 351
>smart00594 UAS UAS domain.
Probab=38.06 E-value=1.3e+02 Score=25.00 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=31.2
Q ss_pred EEEEEcccCCCCCCChhHHHHHH----------HHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRS----------IFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~----------lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
++||..+- .|++|....+ +|++ ++-+-.+|+...+. ..|...+ + ..++|.+.|
T Consensus 30 ~lv~~~~~-----~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg--~~l~~~~-~-~~~~P~~~~ 92 (122)
T smart00594 30 LWLYLHSQ-----DSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEG--QRVSQFY-K-LDSFPYVAI 92 (122)
T ss_pred EEEEEeCC-----CCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhH--HHHHHhc-C-cCCCCEEEE
Confidence 55554442 3999986443 4433 23344577765544 3566666 5 778999754
No 352
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=37.90 E-value=48 Score=32.05 Aligned_cols=74 Identities=20% Similarity=0.215 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEE--ECCEEEecchhhHhHH----HhCc
Q 044679 200 TYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVF--IKGRYVGGVDELTELN----ESGK 268 (333)
Q Consensus 200 tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVF--VdG~~IGG~Del~eL~----EsGe 268 (333)
.++.|..+-..|..+ .|.|..+..+.-+ +...+ . ...+|.|+ .+|..+|.+-.+.++. ....
T Consensus 157 ~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~f-~-~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~d 229 (265)
T PF02114_consen 157 GFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASENF-P-DKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTED 229 (265)
T ss_dssp TSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTTS---TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHH
T ss_pred CCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccCC-c-ccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHH
Confidence 389999999888864 6778877754321 11112 2 56789975 5999888776654432 2236
Q ss_pred HHHHHHhhhhhc
Q 044679 269 LGRMLRSARVEM 280 (333)
Q Consensus 269 L~~lLk~~~~~~ 280 (333)
|..+|..+|...
T Consensus 230 lE~~L~~~G~l~ 241 (265)
T PF02114_consen 230 LEAFLIEYGVLP 241 (265)
T ss_dssp HHHHHHTTTSSS
T ss_pred HHHHHHHcCCCC
Confidence 888888877763
No 353
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=36.91 E-value=23 Score=25.94 Aligned_cols=27 Identities=30% Similarity=0.658 Sum_probs=17.5
Q ss_pred eeeCCCCCCcceeeecCC--------ccccCCCcCc
Q 044679 295 FVPCFDCGGSCKVVLATG--------DKQRCGVCNE 322 (333)
Q Consensus 295 fvpC~~C~GS~K~~~~~~--------~~~rC~~CNE 322 (333)
..||+.| |+..+..... .++.|..|.-
T Consensus 3 LkPCPFC-G~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 3 LKPCPFC-GSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CcCCCCC-CCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 4588888 7766655421 3577888864
No 354
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=36.47 E-value=61 Score=31.32 Aligned_cols=33 Identities=12% Similarity=0.121 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH
Q 044679 203 DCNRVRSIFEVNRVVTDERDVSLHGQFLNELKD 235 (333)
Q Consensus 203 ~C~~aK~lL~~~gV~yeErDVs~d~e~reELke 235 (333)
++....-+|+..|+.++..-.-+-+.++....+
T Consensus 72 DSsas~iilR~~g~~v~p~t~~Lp~~ir~n~~~ 104 (255)
T COG1365 72 DSSASAIILRWAGFTVDPGTAILPDHIRRNKEE 104 (255)
T ss_pred chHHHHHHHHhhceeeccccccCCHHHhHHHHH
Confidence 778899999999976665555555555544433
No 355
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=36.41 E-value=8.5 Score=38.02 Aligned_cols=10 Identities=50% Similarity=1.059 Sum_probs=7.3
Q ss_pred CCccccCCCC
Q 044679 283 GRQACEGCGG 292 (333)
Q Consensus 283 ~~~~C~~CgG 292 (333)
....|..||+
T Consensus 184 ~~~~CPvCGS 193 (308)
T COG3058 184 SRQYCPVCGS 193 (308)
T ss_pred ccccCCCcCC
Confidence 4568888874
No 356
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=36.01 E-value=82 Score=22.90 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=28.1
Q ss_pred EcccCCCCCCChhHHHHHHHHHhC------CCcEEEEECC-CCHHHHHHHHH
Q 044679 191 TTSLRGVRRTYEDCNRVRSIFEVN------RVVTDERDVS-LHGQFLNELKD 235 (333)
Q Consensus 191 TtSlrgiR~tCp~C~~aK~lL~~~------gV~yeErDVs-~d~e~reELke 235 (333)
.+++ |++|+.+...|... ++.+..+|+. .+......+..
T Consensus 40 ~~~~------C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (127)
T COG0526 40 WAPW------CPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV 85 (127)
T ss_pred EcCc------CHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh
Confidence 4776 99999987777652 3778888986 66666665553
No 357
>PLN02412 probable glutathione peroxidase
Probab=35.86 E-value=1.1e+02 Score=26.71 Aligned_cols=53 Identities=6% Similarity=0.021 Sum_probs=27.9
Q ss_pred EEEEEcccCCCCCCChhHHHH----HHH---HHhCCCcEEEEECC--------CCHHHHHHHHHHhCCCcceecEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRV----RSI---FEVNRVVTDERDVS--------LHGQFLNELKDLFGGETVTVPRVF 248 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~a----K~l---L~~~gV~yeErDVs--------~d~e~reELkels~G~~~TvPqVF 248 (333)
||.|..++ |+.|.+- .++ +...|+.+.-+..+ ...+.++.+.+.. ..++|.+.
T Consensus 33 lv~f~a~~------C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~---~~~fpvl~ 100 (167)
T PLN02412 33 LIVNVASK------CGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRF---KAEFPIFD 100 (167)
T ss_pred EEEEeCCC------CCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHcc---CCCCceEe
Confidence 44465665 9999852 222 23346666665542 1234445544443 35677764
No 358
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=35.65 E-value=22 Score=34.28 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.3
Q ss_pred CCccccCCCCcceeeCCCCCCcceeeec
Q 044679 283 GRQACEGCGGARFVPCFDCGGSCKVVLA 310 (333)
Q Consensus 283 ~~~~C~~CgG~rfvpC~~C~GS~K~~~~ 310 (333)
....|..-.|.+++.|+.|.|+-++.-+
T Consensus 26 ~~~py~e~~g~~~vtCPTCqGtGrIP~e 53 (238)
T PF07092_consen 26 SSFPYVEFTGRDSVTCPTCQGTGRIPRE 53 (238)
T ss_pred ccCccccccCCCCCcCCCCcCCccCCcc
Confidence 4668888999999999999999988754
No 359
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.43 E-value=25 Score=36.75 Aligned_cols=36 Identities=19% Similarity=0.516 Sum_probs=21.0
Q ss_pred CCccccCCC-------CcceeeCCCCCCcceeeecCCccccCCCcCcCC
Q 044679 283 GRQACEGCG-------GARFVPCFDCGGSCKVVLATGDKQRCGVCNENG 324 (333)
Q Consensus 283 ~~~~C~~Cg-------G~rfvpC~~C~GS~K~~~~~~~~~rC~~CNENG 324 (333)
....|..|. ..+.+.|..|+-+... ..+||.|...-
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~------~~~Cp~C~s~~ 263 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI------PKTCPQCGSED 263 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCC------CCCCCCCCCCe
Confidence 345677776 3445667777654433 35677776543
No 360
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=34.98 E-value=74 Score=27.41 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=37.4
Q ss_pred CCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECC
Q 044679 198 RRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKG 251 (333)
Q Consensus 198 R~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG 251 (333)
|--|++|..+.-+|... .++++.+|...- |.++-+++|....++|++..++
T Consensus 21 ~f~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 21 RFYCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred eEECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCC
Confidence 33499999999999875 566777775443 5677777732378899988765
No 361
>PLN02400 cellulose synthase
Probab=34.74 E-value=24 Score=40.53 Aligned_cols=39 Identities=31% Similarity=0.721 Sum_probs=25.8
Q ss_pred CCccccCCCCc--------ceeeCCCCCCc-cee---eecCCccccCCCcC
Q 044679 283 GRQACEGCGGA--------RFVPCFDCGGS-CKV---VLATGDKQRCGVCN 321 (333)
Q Consensus 283 ~~~~C~~CgG~--------rfvpC~~C~GS-~K~---~~~~~~~~rC~~CN 321 (333)
.+..|..||+. =||.|-.|+=- ||. +-++.+..-||.|+
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCk 85 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCK 85 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccC
Confidence 46799999987 89999999643 332 23333455555554
No 362
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=34.31 E-value=36 Score=31.52 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=29.6
Q ss_pred hCcHHHHHHhhhhhcccCCccccCCCCcceeeCCCCCCcceeeec-CC-ccccCCCcCcCCc
Q 044679 266 SGKLGRMLRSARVEMGIGRQACEGCGGARFVPCFDCGGSCKVVLA-TG-DKQRCGVCNENGL 325 (333)
Q Consensus 266 sGeL~~lLk~~~~~~g~~~~~C~~CgG~rfvpC~~C~GS~K~~~~-~~-~~~rC~~CNENGL 325 (333)
...|+.+|..+=. .||.|..|+-.--.+.. ++ -+++|-+|..-+-
T Consensus 84 ~~~i~~~l~~yi~---------------~yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~~ 130 (201)
T PRK12336 84 EEDIQAAIDAYVD---------------EYVICSECGLPDTRLVKEDRVLMLRCDACGAHRP 130 (201)
T ss_pred HHHHHHHHHHHHH---------------heEECCCCCCCCcEEEEcCCeEEEEcccCCCCcc
Confidence 3456677766543 38999999887544443 33 3789999976543
No 363
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=34.31 E-value=17 Score=37.16 Aligned_cols=34 Identities=24% Similarity=0.617 Sum_probs=25.5
Q ss_pred CccccCCCC------cceeeCCCCCCcceeeecCCccccC
Q 044679 284 RQACEGCGG------ARFVPCFDCGGSCKVVLATGDKQRC 317 (333)
Q Consensus 284 ~~~C~~CgG------~rfvpC~~C~GS~K~~~~~~~~~rC 317 (333)
+..|..||+ +|.+-|..|.|=.|.-+.|...-.|
T Consensus 15 ~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC 54 (475)
T KOG4218|consen 15 GELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTC 54 (475)
T ss_pred ccccccccCccccceeeeeehhhhhhHHHHHhhcCcceec
Confidence 557999997 5889999999997776666543444
No 364
>PF03691 UPF0167: Uncharacterised protein family (UPF0167); InterPro: IPR005363 The proteins in this family are about 200 amino acids long and each contain 3 CXXC motifs.
Probab=32.92 E-value=45 Score=30.65 Aligned_cols=92 Identities=18% Similarity=0.219 Sum_probs=54.1
Q ss_pred CCCcEEEEEcccC---CCCCCChhHHHHHHHHHhCCCcEE-EEEC---CCCHHHHHHHHHHhCCCcceecEEE-E---CC
Q 044679 183 GSDGVVIYTTSLR---GVRRTYEDCNRVRSIFEVNRVVTD-ERDV---SLHGQFLNELKDLFGGETVTVPRVF-I---KG 251 (333)
Q Consensus 183 ~~~kVVIYTtSlr---giR~tCp~C~~aK~lL~~~gV~ye-ErDV---s~d~e~reELkels~G~~~TvPqVF-V---dG 251 (333)
+..+-++|+.+.= -|...||+|..==+.-+++...|. ..++ ..+.+..+||-.+++| ..+.-|-. . |+
T Consensus 31 gk~~~~~Y~~~~Y~~~dv~~lCPwCIAdG~AA~kfdg~F~d~~~~~~~~~~~~~~~El~~RTPG-y~sWQqe~Wl~hC~D 109 (176)
T PF03691_consen 31 GKARGYYYTGPFYSEEDVEYLCPWCIADGSAAKKFDGEFQDDADLEGVGIDPEKLEELFHRTPG-YSSWQQEYWLAHCDD 109 (176)
T ss_pred CCCceeEecCCceecCCccccCHhHhcCcHhHHhcCeEeecchhcccccCCHHHHHHHHhcCCC-CcccccchhhhhcCC
Confidence 4455555554421 255779999876666666665543 2222 3678899999998865 44333211 0 11
Q ss_pred --EEEe--cchhhHhHHHhCcHHHHHHhhh
Q 044679 252 --RYVG--GVDELTELNESGKLGRMLRSAR 277 (333)
Q Consensus 252 --~~IG--G~Del~eL~EsGeL~~lLk~~~ 277 (333)
.||| |.++|.+| .+.|..+++...
T Consensus 110 ~CaFlG~vg~~El~~~--~~~~~~~~~~~~ 137 (176)
T PF03691_consen 110 YCAFLGYVGWEELKAM--PEELEEVLEDYE 137 (176)
T ss_pred HHHhcCCCCHHHHHHH--HHHHHHHHHHHh
Confidence 2343 56677666 466777777765
No 365
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=32.60 E-value=29 Score=24.83 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=15.4
Q ss_pred eCCCCCCcceeeecCCccccCCCcCcCCc
Q 044679 297 PCFDCGGSCKVVLATGDKQRCGVCNENGL 325 (333)
Q Consensus 297 pC~~C~GS~K~~~~~~~~~rC~~CNENGL 325 (333)
.|..|+..-. +..+..+||+.|.-.=|
T Consensus 4 ~C~~Cg~~~~--~~~~~~irC~~CG~rIl 30 (44)
T smart00659 4 ICGECGRENE--IKSKDVVRCRECGYRIL 30 (44)
T ss_pred ECCCCCCEee--cCCCCceECCCCCceEE
Confidence 4667766422 22345688888875543
No 366
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=32.17 E-value=44 Score=29.73 Aligned_cols=35 Identities=17% Similarity=0.478 Sum_probs=19.6
Q ss_pred CcceeeCCCCCCcceeeecCCccccCCCcCcCCccc
Q 044679 292 GARFVPCFDCGGSCKVVLATGDKQRCGVCNENGLVH 327 (333)
Q Consensus 292 G~rfvpC~~C~GS~K~~~~~~~~~rC~~CNENGL~r 327 (333)
|.|...|..|+-..-... -.....||+|+.+.-.|
T Consensus 109 g~G~l~C~~Cg~~~~~~~-~~~l~~Cp~C~~~~F~R 143 (146)
T PF07295_consen 109 GPGTLVCENCGHEVELTH-PERLPPCPKCGHTEFTR 143 (146)
T ss_pred cCceEecccCCCEEEecC-CCcCCCCCCCCCCeeee
Confidence 556666666655443322 23456777777665444
No 367
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=32.15 E-value=34 Score=24.09 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=5.8
Q ss_pred cccCCCcCc
Q 044679 314 KQRCGVCNE 322 (333)
Q Consensus 314 ~~rC~~CNE 322 (333)
..+|+.|+.
T Consensus 21 ~~~Cp~CG~ 29 (46)
T PRK00398 21 GVRCPYCGY 29 (46)
T ss_pred ceECCCCCC
Confidence 566776654
No 368
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=31.99 E-value=1.6e+02 Score=27.99 Aligned_cols=41 Identities=2% Similarity=-0.104 Sum_probs=27.4
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCC
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSL 225 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~ 225 (333)
++-|+|.-.-......=.|-.++++.|+++|+.+..+++..
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~ 71 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA 71 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch
Confidence 33455544433222233568899999999999988888764
No 369
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=31.88 E-value=39 Score=28.99 Aligned_cols=6 Identities=50% Similarity=1.492 Sum_probs=2.8
Q ss_pred ccccCCC
Q 044679 285 QACEGCG 291 (333)
Q Consensus 285 ~~C~~Cg 291 (333)
..| .||
T Consensus 71 ~~C-~Cg 76 (124)
T PRK00762 71 IEC-ECG 76 (124)
T ss_pred EEe-eCc
Confidence 345 454
No 370
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=31.87 E-value=1.9e+02 Score=24.30 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=21.0
Q ss_pred ChhHHH-------HHHHHHhCCCcEEEEECCCCHHHHHHHHH
Q 044679 201 YEDCNR-------VRSIFEVNRVVTDERDVSLHGQFLNELKD 235 (333)
Q Consensus 201 Cp~C~~-------aK~lL~~~gV~yeErDVs~d~e~reELke 235 (333)
|+.|.. ..+-|...|+.+.-+.++...++++.+++
T Consensus 43 ~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~ 84 (154)
T PRK09437 43 TPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEK 84 (154)
T ss_pred CCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 788853 34445556888877777654444444433
No 371
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=31.37 E-value=1.2e+02 Score=26.53 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHhCCCcEEEEEC-CCC----HHHHHHHH--HHhCCCcceecEEEECCEE-EecchhhH
Q 044679 206 RVRSIFEVNRVVTDERDV-SLH----GQFLNELK--DLFGGETVTVPRVFIKGRY-VGGVDELT 261 (333)
Q Consensus 206 ~aK~lL~~~gV~yeErDV-s~d----~e~reELk--els~G~~~TvPqVFVdG~~-IGG~Del~ 261 (333)
.+.+++...|+.-.+..- ..+ ..+.+... ... | ...+|.++|+|++ +.|+....
T Consensus 133 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~-g-v~G~Pt~vv~g~~~~~G~~~~~ 194 (201)
T cd03024 133 VLVDLAEEAGLDAAEARAVLASDEYADEVRADEARARQL-G-ISGVPFFVFNGKYAVSGAQPPE 194 (201)
T ss_pred HHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHHHHC-C-CCcCCEEEECCeEeecCCCCHH
Confidence 466677777776432211 111 12222222 123 5 7889999999885 57776543
No 372
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=31.29 E-value=41 Score=28.38 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=13.8
Q ss_pred CCccccCCCC-----cceeeCCCCCCcc
Q 044679 283 GRQACEGCGG-----ARFVPCFDCGGSC 305 (333)
Q Consensus 283 ~~~~C~~CgG-----~rfvpC~~C~GS~ 305 (333)
....|..||. ..+..|+.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred cEEEcccCCCEEecCCcCccCcCCCCCC
Confidence 3557888874 2334477777543
No 373
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=31.29 E-value=1.3e+02 Score=26.74 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=38.5
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhC--CCcEEEEECCCCHHHHHHHHHHhCCCcceec--EEEE-CCEEEecchh
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVN--RVVTDERDVSLHGQFLNELKDLFGGETVTVP--RVFI-KGRYVGGVDE 259 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~--gV~yeErDVs~d~e~reELkels~G~~~TvP--qVFV-dG~~IGG~De 259 (333)
..||+|-.. |+.|.....+|.++ +-.|...++-.. .-..+.+.. |....-+ .+|+ +|+..-|.|.
T Consensus 9 ~~vvlyDG~-------C~lC~~~vrfLi~~D~~~~i~f~~~q~e--~g~~~l~~~-~l~~~~~~s~~~~~~g~~~~~sdA 78 (137)
T COG3011 9 DLVVLYDGV-------CPLCDGWVRFLIRRDQGGRIRFAALQSE--PGQALLEAA-GLDPEDVDSVLLVEAGQLLVGSDA 78 (137)
T ss_pred CEEEEECCc-------chhHHHHHHHHHHhccCCcEEEEeccCc--hhhhHHhhc-CCChhhhheeeEecCCceEeccHH
Confidence 446666554 99999999888876 444666665332 223444444 3222222 3444 4566666666
Q ss_pred hHh
Q 044679 260 LTE 262 (333)
Q Consensus 260 l~e 262 (333)
+.+
T Consensus 79 ~~~ 81 (137)
T COG3011 79 AIR 81 (137)
T ss_pred HHH
Confidence 543
No 374
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=31.28 E-value=32 Score=24.47 Aligned_cols=26 Identities=23% Similarity=0.609 Sum_probs=13.8
Q ss_pred CCCCCCcceeee--cCCccccCCCcCcC
Q 044679 298 CFDCGGSCKVVL--ATGDKQRCGVCNEN 323 (333)
Q Consensus 298 C~~C~GS~K~~~--~~~~~~rC~~CNEN 323 (333)
|..|+-.--++. .+.....||.|...
T Consensus 8 C~~Cg~~fe~~~~~~~~~~~~CP~Cg~~ 35 (52)
T TIGR02605 8 CTACGHRFEVLQKMSDDPLATCPECGGE 35 (52)
T ss_pred eCCCCCEeEEEEecCCCCCCCCCCCCCC
Confidence 566655333332 12245678888863
No 375
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.21 E-value=34 Score=35.31 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=21.7
Q ss_pred ceeeCCCCCCcceeeecCC-ccccCCCcCcCCccc
Q 044679 294 RFVPCFDCGGSCKVVLATG-DKQRCGVCNENGLVH 327 (333)
Q Consensus 294 rfvpC~~C~GS~K~~~~~~-~~~rC~~CNENGL~r 327 (333)
...-|..|+=|+.+-.-+. ....|++||||-|..
T Consensus 226 ~l~~C~~C~~s~n~e~~~~sk~~~Cp~C~~~~L~~ 260 (457)
T KOG2324|consen 226 TLMSCPSCGYSKNSEDLDLSKIASCPKCNEGRLTK 260 (457)
T ss_pred ceeecCcCCccCchhhhcCCccccCCcccCCCccc
Confidence 3455777776654433222 347899999987754
No 376
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=31.08 E-value=98 Score=26.33 Aligned_cols=51 Identities=12% Similarity=0.031 Sum_probs=26.0
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHH-------hCCCcEEEEECCC-------C-HHHHHHHHHHhCCCcceecEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFE-------VNRVVTDERDVSL-------H-GQFLNELKDLFGGETVTVPRV 247 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~-------~~gV~yeErDVs~-------d-~e~reELkels~G~~~TvPqV 247 (333)
|+.|..+| |+ |.+-...|+ ..|+.+.-+.++. + .++++.+++.. ..++|.+
T Consensus 26 vl~fwatw------C~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~---~~~fp~~ 91 (152)
T cd00340 26 LIVNVASK------CG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNY---GVTFPMF 91 (152)
T ss_pred EEEEEcCC------CC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhc---CCCceee
Confidence 44466665 88 876433333 2455555554421 2 23444444433 3567765
No 377
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=31.03 E-value=1.6e+02 Score=23.94 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=13.0
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHH
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFE 212 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~ 212 (333)
-|+.|.+++ |+.|.+....|.
T Consensus 26 vvl~F~a~~------C~~C~~~~p~l~ 46 (126)
T cd03012 26 VLLDFWTYC------CINCLHTLPYLT 46 (126)
T ss_pred EEEEEECCC------CccHHHHHHHHH
Confidence 355555555 999987644443
No 378
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=30.57 E-value=39 Score=40.99 Aligned_cols=54 Identities=26% Similarity=0.453 Sum_probs=32.0
Q ss_pred EEecchhhHhHHHhCcHHHHHHhhhhhc---ccCCccccCCCCcce---------eeCCCCCCccee
Q 044679 253 YVGGVDELTELNESGKLGRMLRSARVEM---GIGRQACEGCGGARF---------VPCFDCGGSCKV 307 (333)
Q Consensus 253 ~IGG~Del~eL~EsGeL~~lLk~~~~~~---g~~~~~C~~CgG~rf---------vpC~~C~GS~K~ 307 (333)
|+|=||++++++..=...+.. ++.... ....+.|..|.|.+. +.|..|+|.+..
T Consensus 687 Y~g~fd~IR~lFA~~~~ak~~-g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 687 YIKAFDDLRELFAEQPRSKRL-GLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred ehhhhHHHHHHHhhChHHHHc-CCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 445566777666443333321 111110 114678999999985 589999997643
No 379
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=30.53 E-value=2.3e+02 Score=24.87 Aligned_cols=67 Identities=9% Similarity=-0.031 Sum_probs=39.2
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhC-CC--------cceecEEEECCE
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFG-GE--------TVTVPRVFIKGR 252 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~-G~--------~~TvPqVFVdG~ 252 (333)
..+++|..|.+...-.....-.++-+.++..||.+.-+-|... -...|.++.. |+ ..-.|++||+++
T Consensus 109 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~~--~~~~L~~IA~~~~~~~~~~~~~~l~~~~~~~~~ 184 (186)
T cd01480 109 ENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQ--NEEPLSRIACDGKSALYRENFAELLWSFFIDDE 184 (186)
T ss_pred CceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCcc--chHHHHHHHcCCcchhhhcchhhhccccccccc
Confidence 4566666666532112233445566678899999888887652 2345666652 11 234578887764
No 380
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=30.07 E-value=2.7e+02 Score=21.74 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=36.6
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHh
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLF 237 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels 237 (333)
.++++||+.+ ...+..+...|...++.+..+.-.++...+..+.+..
T Consensus 28 ~~~~lvf~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f 74 (131)
T cd00079 28 GGKVLIFCPS-------KKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDF 74 (131)
T ss_pred CCcEEEEeCc-------HHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHH
Confidence 4679999988 4789999999998888888887777666666665544
No 381
>PRK07220 DNA topoisomerase I; Validated
Probab=29.96 E-value=54 Score=36.11 Aligned_cols=48 Identities=29% Similarity=0.681 Sum_probs=29.0
Q ss_pred CccccCCCC----------cceeeCCC---CCCcceeeecCC----ccccCCCcCc-------CC----cccCCCCC
Q 044679 284 RQACEGCGG----------ARFVPCFD---CGGSCKVVLATG----DKQRCGVCNE-------NG----LVHCPACS 332 (333)
Q Consensus 284 ~~~C~~CgG----------~rfvpC~~---C~GS~K~~~~~~----~~~rC~~CNE-------NG----L~rCp~C~ 332 (333)
...|..||+ .+|+-|+. |.-..... .++ ....|+.|+. .| -+.||.|.
T Consensus 589 ~~~CP~Cg~~l~~r~~r~g~~f~gCs~yp~C~~~~~l~-~~g~~~~~~~~Cp~Cg~~~~k~~~~g~~~~~~~Cp~C~ 664 (740)
T PRK07220 589 IGKCPLCGSDLMVRRSKRGSRFIGCEGYPECTFSLPLP-KSGQIIVTDKVCEAHGLNHIRIINGGKRPWDLGCPQCN 664 (740)
T ss_pred ccccccCCCeeeEEecCCCceEEEcCCCCCCCceeeCC-CCCccccCCCCCCCCCCceEEEEecCCccceeeCCCCC
Confidence 357999984 34888875 65333221 111 2457999974 12 35788885
No 382
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=29.95 E-value=32 Score=26.86 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=32.1
Q ss_pred ceecEEEECCEEEecchhhHhHHHhCcHHHHHHhhhhh
Q 044679 242 VTVPRVFIKGRYVGGVDELTELNESGKLGRMLRSARVE 279 (333)
Q Consensus 242 ~TvPqVFVdG~~IGG~Del~eL~EsGeL~~lLk~~~~~ 279 (333)
...|.||+=+.+-||.--+.++.+...+.++|+.+-..
T Consensus 33 ~~~~~i~lyD~~~GG~G~~~~l~~~~~~~~ll~~A~~~ 70 (84)
T PF09369_consen 33 QGPPRIFLYDTVPGGAGYAERLFERERFEELLRRALEL 70 (84)
T ss_pred CCccEEEEEECCCCchhhHhhhcChhHHHHHHHHHHHH
Confidence 56789999998999998888998888899999876654
No 383
>PRK04023 DNA polymerase II large subunit; Validated
Probab=29.43 E-value=36 Score=39.05 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=12.4
Q ss_pred HHHHHHHhCCCcEEEEE
Q 044679 206 RVRSIFEVNRVVTDERD 222 (333)
Q Consensus 206 ~aK~lL~~~gV~yeErD 222 (333)
.+|++|+.++|++...|
T Consensus 506 ~~k~~LE~L~v~H~~~~ 522 (1121)
T PRK04023 506 GVKRILEKLGVPHRVRD 522 (1121)
T ss_pred HHHHHHHHhCCceEecC
Confidence 68888888888755443
No 384
>PHA00626 hypothetical protein
Probab=28.80 E-value=38 Score=26.00 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=8.3
Q ss_pred ccCCCCcceeeCCCCCC
Q 044679 287 CEGCGGARFVPCFDCGG 303 (333)
Q Consensus 287 C~~CgG~rfvpC~~C~G 303 (333)
|..||-.-.+-|..|.+
T Consensus 3 CP~CGS~~Ivrcg~cr~ 19 (59)
T PHA00626 3 CPKCGSGNIAKEKTMRG 19 (59)
T ss_pred CCCCCCceeeeeceecc
Confidence 55555544444444444
No 385
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=28.64 E-value=19 Score=36.81 Aligned_cols=55 Identities=22% Similarity=0.428 Sum_probs=39.0
Q ss_pred CCEEEecchhhHhHHHhCcHHHHH--HhhhhhcccCCccccCCCC-----------cceeeCCCCCCcce
Q 044679 250 KGRYVGGVDELTELNESGKLGRML--RSARVEMGIGRQACEGCGG-----------ARFVPCFDCGGSCK 306 (333)
Q Consensus 250 dG~~IGG~Del~eL~EsGeL~~lL--k~~~~~~g~~~~~C~~CgG-----------~rfvpC~~C~GS~K 306 (333)
+|..+-|.+++.++.+.|.++.|| +.+...+ ...-|..||. ..+..|+.|++...
T Consensus 290 ~G~avyG~~eV~~ALe~GAVetLLV~d~l~~~r--~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 357 (409)
T TIGR00108 290 DGLACYGEDEVLKALDLGAVETLIVSEDLEYIR--VTYKCAECGEVIEKTVRELKDKKFAICPACGQEMD 357 (409)
T ss_pred CCcEEeCHHHHHHHHHhCCCcEEEEecccccee--EEEEcCCCCceeecccccccccccccCcccCcccc
Confidence 478899999999999999998886 3333322 2456888873 23446888887753
No 386
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=28.39 E-value=1.3e+02 Score=28.51 Aligned_cols=33 Identities=3% Similarity=-0.152 Sum_probs=21.0
Q ss_pred CcEEEEEcccCCCCCCChhHHHHH-------HHHHhCCCcEEEEEC
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVR-------SIFEVNRVVTDERDV 223 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK-------~lL~~~gV~yeErDV 223 (333)
.-||.|..+| |+.|..-. +-+...|+.+.-+++
T Consensus 101 ~vvl~FwAsw------Cp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 101 VLLIVNVASK------CGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred eEEEEEEcCC------CcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3467777776 99997533 223345777777765
No 387
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=28.13 E-value=54 Score=23.16 Aligned_cols=28 Identities=25% Similarity=0.571 Sum_probs=14.4
Q ss_pred ceeeCCCCCCc-ceeeecC---CccccCCCcC
Q 044679 294 RFVPCFDCGGS-CKVVLAT---GDKQRCGVCN 321 (333)
Q Consensus 294 rfvpC~~C~GS-~K~~~~~---~~~~rC~~CN 321 (333)
+-.||+.|.|+ ++.+..+ .+.--|..|+
T Consensus 2 ~h~pCP~CGG~DrFri~~d~~~~G~~~C~~C~ 33 (40)
T PF08273_consen 2 KHGPCPICGGKDRFRIFDDKDGRGTWICRQCG 33 (40)
T ss_dssp EEE--TTTT-TTTEEEETT----S-EEETTTT
T ss_pred CCCCCCCCcCccccccCcCcccCCCEECCCCC
Confidence 45789999998 4442333 2456777773
No 388
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.12 E-value=31 Score=39.58 Aligned_cols=40 Identities=35% Similarity=0.787 Sum_probs=27.1
Q ss_pred cCCccccCCCCc--------ceeeCCCCCCc-ceee---ecCCccccCCCcC
Q 044679 282 IGRQACEGCGGA--------RFVPCFDCGGS-CKVV---LATGDKQRCGVCN 321 (333)
Q Consensus 282 ~~~~~C~~CgG~--------rfvpC~~C~GS-~K~~---~~~~~~~rC~~CN 321 (333)
.....|..||+. =||.|-.|+=. ||.- .++.+..-||.|+
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~ 64 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCN 64 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccC
Confidence 357889999987 89999999644 3332 3334556666665
No 389
>PTZ00056 glutathione peroxidase; Provisional
Probab=27.99 E-value=1.8e+02 Score=26.43 Aligned_cols=32 Identities=3% Similarity=-0.118 Sum_probs=19.0
Q ss_pred cEEEEEcccCCCCCCChhHHH----HHHHHH---hCCCcEEEEEC
Q 044679 186 GVVIYTTSLRGVRRTYEDCNR----VRSIFE---VNRVVTDERDV 223 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~----aK~lL~---~~gV~yeErDV 223 (333)
-||.|..+| |+.|.+ +.++.+ ..|+.+.-+++
T Consensus 42 vlv~fwAsw------C~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 42 LMITNSASK------CGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred EEEEEECCC------CCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 355666666 999985 333333 34676666654
No 390
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=27.62 E-value=1.9e+02 Score=23.79 Aligned_cols=31 Identities=10% Similarity=-0.044 Sum_probs=17.4
Q ss_pred ChhHHHHHHHH-------HhCCCcEEEEECCCCHHHHH
Q 044679 201 YEDCNRVRSIF-------EVNRVVTDERDVSLHGQFLN 231 (333)
Q Consensus 201 Cp~C~~aK~lL-------~~~gV~yeErDVs~d~e~re 231 (333)
|+.|.+...-| .+.++.+.-+.++....+++
T Consensus 41 c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~ 78 (149)
T cd03018 41 TPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRA 78 (149)
T ss_pred CccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHH
Confidence 89997543333 33467776666654333333
No 391
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=27.37 E-value=80 Score=22.32 Aligned_cols=35 Identities=26% Similarity=0.555 Sum_probs=24.7
Q ss_pred ceeeCCCCCCcceeeecCC--ccccCCCcCcCCcccCC
Q 044679 294 RFVPCFDCGGSCKVVLATG--DKQRCGVCNENGLVHCP 329 (333)
Q Consensus 294 rfvpC~~C~GS~K~~~~~~--~~~rC~~CNENGL~rCp 329 (333)
+.+-|..|+.........+ ...+|...++.|. .|+
T Consensus 4 g~l~C~~CG~~m~~~~~~~~~~yy~C~~~~~~~~-~C~ 40 (58)
T PF13408_consen 4 GLLRCGHCGSKMTRRKRKGKYRYYRCSNRRRKGK-GCP 40 (58)
T ss_pred CcEEcccCCcEeEEEECCCCceEEEcCCCcCCCC-CCC
Confidence 5677888887755554432 5789999998886 355
No 392
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=27.26 E-value=3.5e+02 Score=24.83 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=31.9
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCc-EEEEECC-----CCHHHHHHHHH
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVV-TDERDVS-----LHGQFLNELKD 235 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~-yeErDVs-----~d~e~reELke 235 (333)
..+|++-.+.. +. .+.++.....+|+++|+. ...++++ .++++.+.|..
T Consensus 29 ~~~i~~iptA~-~~--~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ 83 (217)
T cd03145 29 GARIVVIPAAS-EE--PAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRD 83 (217)
T ss_pred CCcEEEEeCCC-cC--hhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHh
Confidence 34565555543 11 477899999999999986 6667775 35555554443
No 393
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=27.23 E-value=24 Score=33.93 Aligned_cols=17 Identities=59% Similarity=1.468 Sum_probs=0.0
Q ss_pred ccCCCcCc--------CCcccCCCC
Q 044679 315 QRCGVCNE--------NGLVHCPAC 331 (333)
Q Consensus 315 ~rC~~CNE--------NGL~rCp~C 331 (333)
++|.+||| |.|.|||.|
T Consensus 171 V~CgHC~~tFLfnt~tnaLArCPHC 195 (275)
T KOG4684|consen 171 VKCGHCNETFLFNTLTNALARCPHC 195 (275)
T ss_pred EEecCccceeehhhHHHHHhcCCcc
No 394
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.99 E-value=99 Score=30.53 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=50.9
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEE--EECCEEE--
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRV--FIKGRYV-- 254 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqV--FVdG~~I-- 254 (333)
.--||=||.+| |.-|+++-=++..+ |.-|-.+||+.-.... .-. | ...+|+. |.+|.-|
T Consensus 22 k~v~Vdfta~w------CGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~ta----a~~-g-V~amPTFiff~ng~kid~ 89 (288)
T KOG0908|consen 22 KLVVVDFTASW------CGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTA----ATN-G-VNAMPTFIFFRNGVKIDQ 89 (288)
T ss_pred eEEEEEEEecc------cchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchh----hhc-C-cccCceEEEEecCeEeee
Confidence 34577799999 89999999999875 4448889986543321 112 5 7788884 7888755
Q ss_pred -ecchhhHhHHHhCcHHHHHHhhhh
Q 044679 255 -GGVDELTELNESGKLGRMLRSARV 278 (333)
Q Consensus 255 -GG~Del~eL~EsGeL~~lLk~~~~ 278 (333)
-|+|.. -|+++++.+..
T Consensus 90 ~qGAd~~-------gLe~kv~~~~s 107 (288)
T KOG0908|consen 90 IQGADAS-------GLEEKVAKYAS 107 (288)
T ss_pred ecCCCHH-------HHHHHHHHHhc
Confidence 565542 36666655443
No 395
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=26.80 E-value=33 Score=33.41 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=10.3
Q ss_pred EEEEEcccCCCCCCChh--HHHHH
Q 044679 187 VVIYTTSLRGVRRTYED--CNRVR 208 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~--C~~aK 208 (333)
.+|-..+ ..|-.||. |+++.
T Consensus 114 LLICk~s--S~rIaCPRp~CkRiI 135 (256)
T PF09788_consen 114 LLICKSS--SQRIACPRPNCKRII 135 (256)
T ss_pred EEEeecc--cccccCCCCCCcceE
Confidence 4444433 24556754 77653
No 396
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=26.74 E-value=42 Score=24.64 Aligned_cols=24 Identities=29% Similarity=0.697 Sum_probs=14.3
Q ss_pred eeCCCCCCcceeeecCCccccCCCcC
Q 044679 296 VPCFDCGGSCKVVLATGDKQRCGVCN 321 (333)
Q Consensus 296 vpC~~C~GS~K~~~~~~~~~rC~~CN 321 (333)
.-|+.|+.. .|..+.....|..|.
T Consensus 21 ~fCP~Cg~~--~m~~~~~r~~C~~Cg 44 (50)
T PRK00432 21 KFCPRCGSG--FMAEHLDRWHCGKCG 44 (50)
T ss_pred CcCcCCCcc--hheccCCcEECCCcC
Confidence 346666443 444455667888875
No 397
>PTZ00256 glutathione peroxidase; Provisional
Probab=26.71 E-value=1.7e+02 Score=25.90 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=28.2
Q ss_pred EEEEcccCCCCCCChhHHHH----HHHH---HhCCCcEEEEECCC-------C-HHHHHHHHHHhCCCcceecEE
Q 044679 188 VIYTTSLRGVRRTYEDCNRV----RSIF---EVNRVVTDERDVSL-------H-GQFLNELKDLFGGETVTVPRV 247 (333)
Q Consensus 188 VIYTtSlrgiR~tCp~C~~a----K~lL---~~~gV~yeErDVs~-------d-~e~reELkels~G~~~TvPqV 247 (333)
++|..+| |+.|.+- .++. ...|+.+.-++++. + .++++.+.+.. ..++|.+
T Consensus 46 v~n~atw------Cp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~---~~~fpv~ 111 (183)
T PTZ00256 46 VVNVACK------CGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKF---NVDFPLF 111 (183)
T ss_pred EEEECCC------CCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhc---CCCCCCc
Confidence 3456676 9999863 3333 34567776665431 1 34455554444 3457765
No 398
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=26.57 E-value=45 Score=31.14 Aligned_cols=29 Identities=21% Similarity=0.555 Sum_probs=22.6
Q ss_pred CCcceeeCCCCCCcceeeecCCccccCCCcCc
Q 044679 291 GGARFVPCFDCGGSCKVVLATGDKQRCGVCNE 322 (333)
Q Consensus 291 gG~rfvpC~~C~GS~K~~~~~~~~~rC~~CNE 322 (333)
-|.-|..|+.|.+-... .+..++||.|.-
T Consensus 145 lGVI~A~CsrC~~~L~~---~~~~l~Cp~Cg~ 173 (188)
T COG1096 145 LGVIYARCSRCRAPLVK---KGNMLKCPNCGN 173 (188)
T ss_pred ceEEEEEccCCCcceEE---cCcEEECCCCCC
Confidence 57778889999886543 667899999974
No 399
>PHA03075 glutaredoxin-like protein; Provisional
Probab=26.32 E-value=71 Score=27.94 Aligned_cols=30 Identities=10% Similarity=0.234 Sum_probs=25.2
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEE
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDE 220 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeE 220 (333)
..+++|++++ |+-|+.+.++|..+.=+|+.
T Consensus 3 ~tLILfGKP~------C~vCe~~s~~l~~ledeY~i 32 (123)
T PHA03075 3 KTLILFGKPL------CSVCESISEALKELEDEYDI 32 (123)
T ss_pred ceEEEeCCcc------cHHHHHHHHHHHHhhccccE
Confidence 5689999998 99999999999887666554
No 400
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=26.25 E-value=35 Score=28.62 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=12.4
Q ss_pred CccccCCCCcc-----eeeCCCCCCccee
Q 044679 284 RQACEGCGGAR-----FVPCFDCGGSCKV 307 (333)
Q Consensus 284 ~~~C~~CgG~r-----fvpC~~C~GS~K~ 307 (333)
...|..||-.. ...|+.|++....
T Consensus 70 ~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~ 98 (113)
T PF01155_consen 70 RARCRDCGHEFEPDEFDFSCPRCGSPDVE 98 (113)
T ss_dssp EEEETTTS-EEECHHCCHH-SSSSSS-EE
T ss_pred cEECCCCCCEEecCCCCCCCcCCcCCCcE
Confidence 55677777543 2457777666433
No 401
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=26.22 E-value=57 Score=27.55 Aligned_cols=23 Identities=26% Similarity=0.622 Sum_probs=14.1
Q ss_pred CCccccCCCCc-----ceeeCCCCCCcc
Q 044679 283 GRQACEGCGGA-----RFVPCFDCGGSC 305 (333)
Q Consensus 283 ~~~~C~~CgG~-----rfvpC~~C~GS~ 305 (333)
....|..||-. .+..|+.|++..
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~ 96 (115)
T TIGR00100 69 VECECEDCSEEVSPEIDLYRCPKCHGIM 96 (115)
T ss_pred cEEEcccCCCEEecCCcCccCcCCcCCC
Confidence 35678888743 244577777654
No 402
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=25.88 E-value=75 Score=23.46 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=26.3
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECC
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKG 251 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG 251 (333)
+.||++.. --....++.+|++.||++...|-.+..- .-.. | ....+.|+|..
T Consensus 1 ~~l~~~~~------~~ea~~i~~~L~~~gI~~~v~~~~~~~~-----~g~~-g-~~~~~~v~V~~ 52 (67)
T PF09413_consen 1 KKLYTAGD------PIEAELIKGLLEENGIPAFVKNEHMSGY-----AGEP-G-TGGQVEVYVPE 52 (67)
T ss_dssp EEEEEE--------HHHHHHHHHHHHHTT--EE--S----SS--------S----SSSEEEEEEG
T ss_pred CEEEEcCC------HHHHHHHHHHHHhCCCcEEEECCccchh-----hccc-C-ccCceEEEECH
Confidence 35666664 3578999999999999999887543221 0012 2 33347788766
No 403
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.48 E-value=66 Score=36.07 Aligned_cols=51 Identities=27% Similarity=0.630 Sum_probs=38.3
Q ss_pred CCccccCCCC---cceeeCCCCCCcceeeecCC------ccccCCCcCcCCcc-------cCCCCCC
Q 044679 283 GRQACEGCGG---ARFVPCFDCGGSCKVVLATG------DKQRCGVCNENGLV-------HCPACSS 333 (333)
Q Consensus 283 ~~~~C~~CgG---~rfvpC~~C~GS~K~~~~~~------~~~rC~~CNENGL~-------rCp~C~~ 333 (333)
+.-.|..||+ ---.-|+.|++.--+-++.| .|--|+.|..-.++ -||.|.|
T Consensus 1116 ~~vdc~~cg~~i~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~y~~CPLCHs 1182 (1189)
T KOG2041|consen 1116 AKVDCSVCGAKIDPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISKYNCCPLCHS 1182 (1189)
T ss_pred cceeeeecCCcCCccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccccccCccccC
Confidence 4568999998 45567999999877766655 47788888876665 4899875
No 404
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=25.41 E-value=24 Score=28.71 Aligned_cols=39 Identities=31% Similarity=0.783 Sum_probs=14.2
Q ss_pred CCccccCCCC--------cceeeCCCCCCc-ceeee---cCCccccCCCcC
Q 044679 283 GRQACEGCGG--------ARFVPCFDCGGS-CKVVL---ATGDKQRCGVCN 321 (333)
Q Consensus 283 ~~~~C~~CgG--------~rfvpC~~C~GS-~K~~~---~~~~~~rC~~CN 321 (333)
....|..||+ .-||.|..|+=. +|.-+ ++.+..-|+.|+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCk 58 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCK 58 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT-
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccC
Confidence 4678999984 568888888654 33222 233445555554
No 405
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=25.36 E-value=38 Score=26.07 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=9.3
Q ss_pred ccccCCCcCcCCcccCCCC
Q 044679 313 DKQRCGVCNENGLVHCPAC 331 (333)
Q Consensus 313 ~~~rC~~CNENGL~rCp~C 331 (333)
..-.||.|.|--+.||..|
T Consensus 24 ~~F~CPnCG~~~I~RC~~C 42 (59)
T PRK14890 24 VKFLCPNCGEVIIYRCEKC 42 (59)
T ss_pred CEeeCCCCCCeeEeechhH
Confidence 3444555555444455444
No 406
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=25.19 E-value=72 Score=24.40 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=12.9
Q ss_pred EEECCEEEecchhhHh
Q 044679 247 VFIKGRYVGGVDELTE 262 (333)
Q Consensus 247 VFVdG~~IGG~Del~e 262 (333)
||+||.+||=.++-.+
T Consensus 1 VFlNG~~iG~~~~p~~ 16 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEE 16 (63)
T ss_dssp EEETTEEEEEESSHHH
T ss_pred CEECCEEEEEEcCHHH
Confidence 7999999998776443
No 407
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=25.11 E-value=24 Score=39.65 Aligned_cols=44 Identities=32% Similarity=0.807 Sum_probs=0.0
Q ss_pred CCccccCCCCcce-eeCCCCCCcceeeecCCccccCCCcCcC-CcccCCCCC
Q 044679 283 GRQACEGCGGARF-VPCFDCGGSCKVVLATGDKQRCGVCNEN-GLVHCPACS 332 (333)
Q Consensus 283 ~~~~C~~CgG~rf-vpC~~C~GS~K~~~~~~~~~rC~~CNEN-GL~rCp~C~ 332 (333)
+...|..||-..| ..|+.|++.... ..+|+.|+.. .--.||.|.
T Consensus 654 ~~r~Cp~Cg~~t~~~~Cp~CG~~T~~------~~~Cp~C~~~~~~~~C~~C~ 699 (900)
T PF03833_consen 654 GRRRCPKCGKETFYNRCPECGSHTEP------VYVCPDCGIEVEEDECPKCG 699 (900)
T ss_dssp ----------------------------------------------------
T ss_pred ecccCcccCCcchhhcCcccCCcccc------ceeccccccccCcccccccc
Confidence 4567999998765 569999877543 3667777643 223677773
No 408
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.68 E-value=1.2e+02 Score=29.25 Aligned_cols=66 Identities=14% Similarity=0.296 Sum_probs=49.7
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEECCEEEecchhhHh
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDELTE 262 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~reELkels~G~~~TvPqVFVdG~~IGG~Del~e 262 (333)
....|.+|-.. .|-.|+.+|+-.+++|.++--.. .++ +++| ..+|-|-||...+.+++-++.
T Consensus 25 e~eQiLl~d~a---------scLAVqtfLrMcnLPf~v~~~~N-aef------mSP~--G~vPllr~g~~~~aef~pIV~ 86 (257)
T KOG3027|consen 25 EAEQILLPDNA---------SCLAVQTFLRMCNLPFNVRQRAN-AEF------MSPG--GKVPLLRIGKTLFAEFEPIVD 86 (257)
T ss_pred cccccccccch---------hHHHHHHHHHHcCCCceeeecCC-ccc------cCCC--CCCceeeecchhhhhhhHHHH
Confidence 44568887765 79999999999999998875432 111 1223 389999999999999998888
Q ss_pred HHHh
Q 044679 263 LNES 266 (333)
Q Consensus 263 L~Es 266 (333)
..+.
T Consensus 87 fVea 90 (257)
T KOG3027|consen 87 FVEA 90 (257)
T ss_pred HHHH
Confidence 7665
No 409
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=24.62 E-value=52 Score=22.18 Aligned_cols=24 Identities=38% Similarity=0.927 Sum_probs=12.9
Q ss_pred CCCCCCcceeeecCCccccCCCcCcC
Q 044679 298 CFDCGGSCKVVLATGDKQRCGVCNEN 323 (333)
Q Consensus 298 C~~C~GS~K~~~~~~~~~rC~~CNEN 323 (333)
|..|+..-. +..+..+||+.|.-.
T Consensus 3 C~~Cg~~~~--~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 3 CGECGAEVE--LKPGDPIRCPECGHR 26 (32)
T ss_dssp ESSSSSSE---BSTSSTSSBSSSS-S
T ss_pred CCcCCCeeE--cCCCCcEECCcCCCe
Confidence 556654433 333456788888643
No 410
>PRK11032 hypothetical protein; Provisional
Probab=24.48 E-value=66 Score=29.19 Aligned_cols=40 Identities=20% Similarity=0.427 Sum_probs=0.0
Q ss_pred cHHHHHHhhhhhc--------ccCCccccCCCC-------cceeeCCCCCCccee
Q 044679 268 KLGRMLRSARVEM--------GIGRQACEGCGG-------ARFVPCFDCGGSCKV 307 (333)
Q Consensus 268 eL~~lLk~~~~~~--------g~~~~~C~~CgG-------~rfvpC~~C~GS~K~ 307 (333)
++.++.+.+.+.. |-+.-.|..||- .+..||..|++.-+.
T Consensus 100 Ew~el~~dl~h~g~Y~sGEvvg~G~LvC~~Cg~~~~~~~p~~i~pCp~C~~~~F~ 154 (160)
T PRK11032 100 EWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHHHLAFYTPEVLPLCPKCGHDQFQ 154 (160)
T ss_pred HHHHHHHHhhhcCeeecceeeecceEEecCCCCEEEecCCCcCCCCCCCCCCeee
No 411
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.23 E-value=64 Score=28.74 Aligned_cols=25 Identities=40% Similarity=0.929 Sum_probs=19.7
Q ss_pred CCccccCCCCc-------ceeeCCCCCCccee
Q 044679 283 GRQACEGCGGA-------RFVPCFDCGGSCKV 307 (333)
Q Consensus 283 ~~~~C~~CgG~-------rfvpC~~C~GS~K~ 307 (333)
+...|..||-. +..||+.|+|.-+.
T Consensus 111 G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~~F~ 142 (146)
T PF07295_consen 111 GTLVCENCGHEVELTHPERLPPCPKCGHTEFT 142 (146)
T ss_pred ceEecccCCCEEEecCCCcCCCCCCCCCCeee
Confidence 56699999964 45689999998654
No 412
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=24.12 E-value=2.7e+02 Score=25.54 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=27.5
Q ss_pred CCCcEEEEEcccCCCCCCChhHHHHHHHH---HhCCCcE------EEEECCCC
Q 044679 183 GSDGVVIYTTSLRGVRRTYEDCNRVRSIF---EVNRVVT------DERDVSLH 226 (333)
Q Consensus 183 ~~~kVVIYTtSlrgiR~tCp~C~~aK~lL---~~~gV~y------eErDVs~d 226 (333)
+.-.||-|..+| |+.|+.=.-+| ...|+++ .-+|++.+
T Consensus 59 GKV~lvn~~Asw------c~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 59 GKVRVVHHIAGR------TSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred CCEEEEEEEecC------CChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 555688899998 89998654444 5568888 77777654
No 413
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=23.68 E-value=1.6e+02 Score=24.94 Aligned_cols=30 Identities=7% Similarity=-0.073 Sum_probs=18.8
Q ss_pred EEEEEcccCCCCCCChhHHHHH----HHHHh---CCCcEEEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVR----SIFEV---NRVVTDERD 222 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK----~lL~~---~gV~yeErD 222 (333)
||+|.+++ |+.|.+-. ++.+. .|+.+.-++
T Consensus 26 vv~~~as~------C~~c~~~~~~l~~l~~~~~~~~~~v~~i~ 62 (153)
T TIGR02540 26 LVVNVASE------CGFTDQNYRALQELHRELGPSHFNVLAFP 62 (153)
T ss_pred EEEEeCCC------CCchhhhHHHHHHHHHHHhhCCeEEEEEe
Confidence 57777776 99997543 33333 366666655
No 414
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=23.60 E-value=65 Score=28.00 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=7.6
Q ss_pred ccccCCCcCcCC
Q 044679 313 DKQRCGVCNENG 324 (333)
Q Consensus 313 ~~~rC~~CNENG 324 (333)
.+.+||.|....
T Consensus 106 ~~~~CP~Cgs~~ 117 (135)
T PRK03824 106 AFLKCPKCGSRD 117 (135)
T ss_pred cCcCCcCCCCCC
Confidence 456788887543
No 415
>PLN02790 transketolase
Probab=23.13 E-value=2.3e+02 Score=30.73 Aligned_cols=87 Identities=9% Similarity=0.075 Sum_probs=51.2
Q ss_pred CcEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHH----HHHHHHHhCCCcceecEEEECCEEEecchhh
Q 044679 185 DGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVSLHGQF----LNELKDLFGGETVTVPRVFIKGRYVGGVDEL 260 (333)
Q Consensus 185 ~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs~d~e~----reELkels~G~~~TvPqVFVdG~~IGG~Del 260 (333)
..|+|.+++. .-..|.++.++|++.||....+|+..-.-+ ..+..+.. + ...-+.|.|....++|+...
T Consensus 541 ~dv~iia~G~-----~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~-~-~~~~~vvtiE~~~~~G~~~~ 613 (654)
T PLN02790 541 PDLILIGTGS-----ELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVL-P-SSVTARVSVEAGSTFGWEKY 613 (654)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhh-c-cccceEEEecCccchhHHHh
Confidence 4677777775 467899999999999999999997543222 12222333 2 22224566655445554332
Q ss_pred ----------HhHHHhCcHHHHHHhhhh
Q 044679 261 ----------TELNESGKLGRMLRSARV 278 (333)
Q Consensus 261 ----------~eL~EsGeL~~lLk~~~~ 278 (333)
...-.+|..+.+++.++.
T Consensus 614 ~~~~~~~igvd~Fg~sg~~~~l~~~~Gl 641 (654)
T PLN02790 614 VGSKGKVIGVDRFGASAPAGILYKEFGF 641 (654)
T ss_pred cCCCceEEEeCCCcCcCCHHHHHHHhCC
Confidence 122345666666655543
No 416
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=23.04 E-value=2.4e+02 Score=22.83 Aligned_cols=28 Identities=11% Similarity=-0.069 Sum_probs=16.3
Q ss_pred ChhHHHHHHHH-------HhCCCcEEEEECCCCHH
Q 044679 201 YEDCNRVRSIF-------EVNRVVTDERDVSLHGQ 228 (333)
Q Consensus 201 Cp~C~~aK~lL-------~~~gV~yeErDVs~d~e 228 (333)
|+.|.....-| +..++.+..+.++....
T Consensus 35 c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~ 69 (140)
T cd02971 35 TPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFS 69 (140)
T ss_pred CCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence 88887533222 23577777777654333
No 417
>PRK02935 hypothetical protein; Provisional
Probab=22.79 E-value=48 Score=28.41 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.4
Q ss_pred eeCCCCCCcceeeecCCccccCCCcCcC
Q 044679 296 VPCFDCGGSCKVVLATGDKQRCGVCNEN 323 (333)
Q Consensus 296 vpC~~C~GS~K~~~~~~~~~rC~~CNEN 323 (333)
|.|++|+--.|..- ++-.|.+|||-
T Consensus 71 V~CP~C~K~TKmLG---rvD~CM~C~~P 95 (110)
T PRK02935 71 VICPSCEKPTKMLG---RVDACMHCNQP 95 (110)
T ss_pred eECCCCCchhhhcc---ceeecCcCCCc
Confidence 57899988777643 46799999984
No 418
>PRK14873 primosome assembly protein PriA; Provisional
Probab=22.23 E-value=58 Score=35.57 Aligned_cols=37 Identities=27% Similarity=0.596 Sum_probs=24.0
Q ss_pred CCccccCCCC-------cceeeCCCCCCcceeeecCCccccCCCcCcCCcc
Q 044679 283 GRQACEGCGG-------ARFVPCFDCGGSCKVVLATGDKQRCGVCNENGLV 326 (333)
Q Consensus 283 ~~~~C~~CgG-------~rfvpC~~C~GS~K~~~~~~~~~rC~~CNENGL~ 326 (333)
....|..|.+ .+.+.|.+|+-.. .-.+|++|...-|.
T Consensus 391 ~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~-------~p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 391 TPARCRHCTGPLGLPSAGGTPRCRWCGRAA-------PDWRCPRCGSDRLR 434 (665)
T ss_pred CeeECCCCCCceeEecCCCeeECCCCcCCC-------cCccCCCCcCCcce
Confidence 4567888874 3456788887532 13688888776443
No 419
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=22.14 E-value=36 Score=34.86 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=39.9
Q ss_pred CCEEEecchhhHhHHHhCcHHHHH--HhhhhhcccCCccccCCCCccee-----------eCCCCCCcce
Q 044679 250 KGRYVGGVDELTELNESGKLGRML--RSARVEMGIGRQACEGCGGARFV-----------PCFDCGGSCK 306 (333)
Q Consensus 250 dG~~IGG~Del~eL~EsGeL~~lL--k~~~~~~g~~~~~C~~CgG~rfv-----------pC~~C~GS~K 306 (333)
+|..+-|.+++.++.+.|.++.|| +.+...+ ....|..||...-. .|..|++...
T Consensus 286 ~g~avyG~~eV~~ALe~GAVetLLV~d~l~~~r--~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (403)
T TIGR03676 286 GGLAAYGEEEVRKALEMGAVDTLLISEDLRKIR--VTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELE 353 (403)
T ss_pred CCcEEEcHHHHHHHHHhCCCcEEEEEcccccee--EEEEcCCCCcceeeecccccccccccCcccCcccc
Confidence 377899999999999999999886 3343333 34678888875432 3888888744
No 420
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=22.13 E-value=71 Score=26.89 Aligned_cols=17 Identities=41% Similarity=0.872 Sum_probs=11.0
Q ss_pred ccCCccccCCCCcceee
Q 044679 281 GIGRQACEGCGGARFVP 297 (333)
Q Consensus 281 g~~~~~C~~CgG~rfvp 297 (333)
|.....|+.||-.++++
T Consensus 39 G~~~~~C~~Cg~~~~~~ 55 (111)
T PF14319_consen 39 GFHRYRCEDCGHEKIVY 55 (111)
T ss_pred CcceeecCCCCceEEec
Confidence 44566777777776553
No 421
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=21.60 E-value=1.8e+02 Score=31.90 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=41.9
Q ss_pred cEEEEEcccCCCCCCChhHHHHHHHHHhCCCcEEEEECC----CCHHHHHHHHHHhCCCcceecEEEECCEEEecchh
Q 044679 186 GVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVVTDERDVS----LHGQFLNELKDLFGGETVTVPRVFIKGRYVGGVDE 259 (333)
Q Consensus 186 kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~yeErDVs----~d~e~reELkels~G~~~TvPqVFVdG~~IGG~De 259 (333)
.|+|.+.+. ....|.+|.+.|++.||..+.+|+. .|.+....+.+.. + -.|.+.+..+||+-.
T Consensus 546 dvtIva~G~-----~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~-~-----~vVt~Ee~~~GG~Gs 612 (641)
T PLN02234 546 RVALLGYGS-----AVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSH-E-----VLITVEEGSIGGFGS 612 (641)
T ss_pred CEEEEEecH-----HHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhC-C-----EEEEECCCCCCcHHH
Confidence 566666664 3678999999999999999999985 3555444443322 1 234456556698743
No 422
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=21.40 E-value=65 Score=31.42 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=24.3
Q ss_pred CCcceeeCCCCCCcceeeecC-CccccCCCcCcCCc
Q 044679 291 GGARFVPCFDCGGSCKVVLAT-GDKQRCGVCNENGL 325 (333)
Q Consensus 291 gG~rfvpC~~C~GS~K~~~~~-~~~~rC~~CNENGL 325 (333)
++...|.|..|+-.=-+--.. ..+++|+.|||---
T Consensus 61 ~~~p~v~CrVCq~~I~i~gk~~QhVVkC~~CnEATP 96 (256)
T PF09788_consen 61 GGAPVVTCRVCQSLIDIEGKMHQHVVKCSVCNEATP 96 (256)
T ss_pred CCCceEEeecCCceecccCccceeeEECCCCCcccc
Confidence 677889999998653332221 25899999999654
No 423
>COG4332 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.38 E-value=65 Score=30.20 Aligned_cols=37 Identities=30% Similarity=0.660 Sum_probs=25.9
Q ss_pred CCccccCCCCcceeeCCCCCCcceeeecCC------ccccCCCcCcC
Q 044679 283 GRQACEGCGGARFVPCFDCGGSCKVVLATG------DKQRCGVCNEN 323 (333)
Q Consensus 283 ~~~~C~~CgG~rfvpC~~C~GS~K~~~~~~------~~~rC~~CNEN 323 (333)
....|.+||+.|--.| +|.-++ .+++ ..-||.+||..
T Consensus 16 ~~k~C~~Cg~kr~f~c---Sg~fRv-NAq~K~LDvWlIYkC~~Cd~t 58 (203)
T COG4332 16 PAKRCNSCGVKRAFTC---SGKFRV-NAQGKVLDVWLIYKCTHCDYT 58 (203)
T ss_pred hhhhCcccCCcceeee---cCcEEE-cCCCcEEEEEEEEEeeccCCc
Confidence 3457999999987654 566555 4444 25799999864
No 424
>PF08646 Rep_fac-A_C: Replication factor-A C terminal domain; InterPro: IPR013955 Replication factor A (RP-A) binds and subsequently stabilises single-stranded DNA intermediates and thus prevents complementary DNA from reannealing. It also plays an essential role in several cellular processes in DNA metabolism including replication, recombination and repair of DNA []. Replication factor-A protein is also known as Replication protein A 70 kDa DNA-binding subunit. This entry is found at the C terminus of Replication factor A.; PDB: 1L1O_F 3U50_C.
Probab=21.38 E-value=58 Score=27.91 Aligned_cols=30 Identities=27% Similarity=0.548 Sum_probs=18.7
Q ss_pred CcceeeCC--CCCCcceeeecCCccccCCCcCcC
Q 044679 292 GARFVPCF--DCGGSCKVVLATGDKQRCGVCNEN 323 (333)
Q Consensus 292 G~rfvpC~--~C~GS~K~~~~~~~~~rC~~CNEN 323 (333)
+.-|..|. .|+. |+.....+.-+|..||.+
T Consensus 15 ~~~Y~aC~~~~C~k--Kv~~~~~~~y~C~~C~~~ 46 (146)
T PF08646_consen 15 NWYYPACPNEKCNK--KVTENGDGSYRCEKCNKT 46 (146)
T ss_dssp TTEEEE-TSTTTS---B-EEETTTEEEETTTTEE
T ss_pred CcEECCCCCccCCC--EeecCCCcEEECCCCCCc
Confidence 34577888 8884 444443456899999876
No 425
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=21.28 E-value=52 Score=28.67 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCCcEEEEE
Q 044679 205 NRVRSIFEVNRVVTDERD 222 (333)
Q Consensus 205 ~~aK~lL~~~gV~yeErD 222 (333)
.++-++|+..|++.....
T Consensus 10 ~~Lar~LR~lG~Dt~~~~ 27 (147)
T PF01927_consen 10 GRLARWLRLLGYDTLYSR 27 (147)
T ss_pred HHHHHHHHHCCCcEEEeC
Confidence 467788888898855444
No 426
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=21.18 E-value=2e+02 Score=30.17 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=35.3
Q ss_pred EEEEEcccCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHHhCCCcceecEEEE
Q 044679 187 VVIYTTSLRGVRRTYEDCNRVRSIFEVN-----RVVTDERDVSLHGQFLNELKDLFGGETVTVPRVFI 249 (333)
Q Consensus 187 VVIYTtSlrgiR~tCp~C~~aK~lL~~~-----gV~yeErDVs~d~e~reELkels~G~~~TvPqVFV 249 (333)
+++|+... |++|..++++|+.. .|.++++|...+.+. .+.+ | ..-+|.+-|
T Consensus 370 l~~~~~~~------~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~----~~~~-~-v~~~P~~~i 425 (555)
T TIGR03143 370 LLLFLDGS------NEKSAELQSFLGEFASLSEKLNSEAVNRGEEPES----ETLP-K-ITKLPTVAL 425 (555)
T ss_pred EEEEECCC------chhhHHHHHHHHHHHhcCCcEEEEEeccccchhh----Hhhc-C-CCcCCEEEE
Confidence 44566553 88999999999873 577888887666443 3334 4 556788765
No 427
>PRK05580 primosome assembly protein PriA; Validated
Probab=21.09 E-value=59 Score=35.29 Aligned_cols=34 Identities=24% Similarity=0.681 Sum_probs=21.1
Q ss_pred CccccCCCCc-------ceeeCCCCCCcceeeecCCccccCCCcCcC
Q 044679 284 RQACEGCGGA-------RFVPCFDCGGSCKVVLATGDKQRCGVCNEN 323 (333)
Q Consensus 284 ~~~C~~CgG~-------rfvpC~~C~GS~K~~~~~~~~~rC~~CNEN 323 (333)
...|..|.+. +.+.|..|+..... -.+||.|+..
T Consensus 390 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~------~~~Cp~Cg~~ 430 (679)
T PRK05580 390 VAECPHCDASLTLHRFQRRLRCHHCGYQEPI------PKACPECGST 430 (679)
T ss_pred ccCCCCCCCceeEECCCCeEECCCCcCCCCC------CCCCCCCcCC
Confidence 4567777743 55678888755432 3568888654
No 428
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=20.96 E-value=3.3e+02 Score=23.61 Aligned_cols=34 Identities=12% Similarity=-0.011 Sum_probs=20.7
Q ss_pred cEEEEE--cccCCCCCCChhHHHHHHHH-------HhCCCcEEEEECCC
Q 044679 186 GVVIYT--TSLRGVRRTYEDCNRVRSIF-------EVNRVVTDERDVSL 225 (333)
Q Consensus 186 kVVIYT--tSlrgiR~tCp~C~~aK~lL-------~~~gV~yeErDVs~ 225 (333)
.||||. .++ |+.|......| .+.|+.+.-+.++.
T Consensus 31 ~vvl~F~~~~~------c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 31 WVVLFFYPLDF------TFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred EEEEEEECCCC------CCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 466666 455 88888644444 34577776666543
No 429
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=20.87 E-value=1.1e+02 Score=29.83 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=38.0
Q ss_pred CCcEEEEEcccCCCCCCChhHHHHHHHHHhCCCc---------EEEEE------CCCCHHH---HHHHHHHhCCCcceec
Q 044679 184 SDGVVIYTTSLRGVRRTYEDCNRVRSIFEVNRVV---------TDERD------VSLHGQF---LNELKDLFGGETVTVP 245 (333)
Q Consensus 184 ~~kVVIYTtSlrgiR~tCp~C~~aK~lL~~~gV~---------yeErD------Vs~d~e~---reELkels~G~~~TvP 245 (333)
.+-|-|||+.. |.-|--+-+.|.++--+ +++-| -....++ +..+...++-...-.|
T Consensus 42 ~~VVELfTSQG------CsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTP 115 (261)
T COG5429 42 LGVVELFTSQG------CSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTP 115 (261)
T ss_pred ceEEEEeecCC------cCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCc
Confidence 35577899886 88888777777765222 22222 1112222 2233333312245569
Q ss_pred EEEECCE-EEecch
Q 044679 246 RVFIKGR-YVGGVD 258 (333)
Q Consensus 246 qVFVdG~-~IGG~D 258 (333)
|+||+|+ +.-|.+
T Consensus 116 QavvnGr~~~~Gad 129 (261)
T COG5429 116 QAVVNGRVHANGAD 129 (261)
T ss_pred hheeechhhhcCCC
Confidence 9999997 445554
No 430
>PF04236 Transp_Tc5_C: Tc5 transposase C-terminal domain; InterPro: IPR007350 This domain corresponds to a C-terminal cysteine rich region that probably binds to a metal ion and could be DNA-binding. It is found in association with the DDE superfamily (IPR004875 from INTERPRO) and the Tc5 transposase family (IPR004906 from INTERPRO). More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.83 E-value=58 Score=25.16 Aligned_cols=20 Identities=25% Similarity=0.901 Sum_probs=13.7
Q ss_pred ccccCCC--cCcCCcccCCCCC
Q 044679 313 DKQRCGV--CNENGLVHCPACS 332 (333)
Q Consensus 313 ~~~rC~~--CNENGL~rCp~C~ 332 (333)
....|.. |++.+.|+|.-|.
T Consensus 26 ~~~~C~~~gC~~~s~I~C~~Ck 47 (63)
T PF04236_consen 26 VAGDCDITGCNNTSFIRCAYCK 47 (63)
T ss_pred CcCcCCCCCCCCcCEEEccccC
Confidence 4566766 7777777777663
No 431
>PF15033 Kinocilin: Kinocilin protein
Probab=20.52 E-value=58 Score=28.01 Aligned_cols=15 Identities=47% Similarity=0.671 Sum_probs=14.0
Q ss_pred ChHHHHHHHhhcccc
Q 044679 74 SWDEVSKVLQDLKPR 88 (333)
Q Consensus 74 ~w~e~s~~l~~~kp~ 88 (333)
|-+-||++||.|||-
T Consensus 103 sLstvsrtleklkpg 117 (124)
T PF15033_consen 103 SLSTVSRTLEKLKPG 117 (124)
T ss_pred hHHHHHHHHHhcCCC
Confidence 889999999999994
Done!