BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044680
         (182 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|1VM0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At2g34160
 pdb|2Q3V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
 pdb|2Q3V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At2g34160
          Length = 130

 Score =  112 bits (281), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/109 (52%), Positives = 76/109 (69%)

Query: 73  NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
           NRI VS+TKKP  FY++LAKRY +QYND+EL+ALG AI TVVT+ E LK +G A  K++ 
Sbjct: 21  NRIQVSNTKKPLFFYVNLAKRYXQQYNDVELSALGXAIATVVTVTEILKNNGFAVEKKIX 80

Query: 133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMK 181
            S V+ K D  GR  QKAKI+I L K+EK ++   A    KE ++T ++
Sbjct: 81  TSIVDIKDDARGRPVQKAKIEITLVKSEKFDELXAAANEEKEDAETQVQ 129


>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
           Catalytic Conformation
 pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
           Catalytic Conformation
          Length = 555

 Score = 27.7 bits (60), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 114 VTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKA 159
           V +AEA+KR GL +N  + +S+ NS +     FF      + +G A
Sbjct: 66  VRLAEAMKRYGLNTNHRIVVSSENSLQ-----FFMPVLGALFIGVA 106


>pdb|2Z7C|B Chain B, Crystal Structure Of Chromatin Protein Alba From
           Hyperthermophilic Archaeon Pyrococcus Horikoshii
 pdb|2Z7C|D Chain D, Crystal Structure Of Chromatin Protein Alba From
           Hyperthermophilic Archaeon Pyrococcus Horikoshii
 pdb|2Z7C|A Chain A, Crystal Structure Of Chromatin Protein Alba From
           Hyperthermophilic Archaeon Pyrococcus Horikoshii
 pdb|2Z7C|C Chain C, Crystal Structure Of Chromatin Protein Alba From
           Hyperthermophilic Archaeon Pyrococcus Horikoshii
          Length = 93

 Score = 27.7 bits (60), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 5/82 (6%)

Query: 81  KKPFVFY-LDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASN---KEVKISTV 136
           KKP + Y L +  ++ +   ++ + A G AI   V +AE ++   L  +   KE+KI T 
Sbjct: 11  KKPVMNYVLAVITQFHEGAKEVSIKARGRAISRAVDVAEIVRNRFLKDDVDVKEIKIGTE 70

Query: 137 NSKKDDEGRFFQKAKIQIVLGK 158
                D GR    + I+IVL +
Sbjct: 71  ELPTAD-GRTTNTSTIEIVLAR 91


>pdb|4H6Q|A Chain A, Structure Of Oxidized Deinococcus Radiodurans Proline
           Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
 pdb|4H6Q|C Chain C, Structure Of Oxidized Deinococcus Radiodurans Proline
           Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
 pdb|4H6R|A Chain A, Structure Of Reduced Deinococcus Radiodurans Proline
           Dehydrogenase
 pdb|4H6R|C Chain C, Structure Of Reduced Deinococcus Radiodurans Proline
           Dehydrogenase
          Length = 312

 Score = 26.6 bits (57), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 96  KQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNS 138
           K +N  E    G +I + +   +AL+RDG+A N ++    ++S
Sbjct: 28  KMWNLAERFVAGESIESAIQAVQALERDGIAGNLDLLGEFIDS 70


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.310    0.126    0.324 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,220,694
Number of Sequences: 62578
Number of extensions: 99681
Number of successful extensions: 224
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 12
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)