BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044680
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22969|Y2416_ARATH Uncharacterized protein At2g34160 OS=Arabidopsis thaliana
GN=At2g34160 PE=1 SV=1
Length = 130
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 79/109 (72%)
Query: 73 NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVK 132
NRI VS+TKKP FY++LAKRY++QYND+EL+ALGMAI TVVT+ E LK +G A K++
Sbjct: 21 NRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIM 80
Query: 133 ISTVNSKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDTDMK 181
STV+ K D GR QKAKI+I L K+EK ++ + A KE ++ ++
Sbjct: 81 TSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAEAQVQ 129
>sp|O30274|ACDA2_ARCFU Acetyl-CoA decarbonylase/synthase complex subunit alpha 2
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=cdhA2 PE=3 SV=1
Length = 798
Score = 36.6 bits (83), Expect = 0.089, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 103 LTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEKL 162
+ +G P V+ IA+ ++ +GL EV + + +D R++QKAKI LG+ K+
Sbjct: 241 ILVIGHHAPPVLNIADYIEENGL--EDEVDLGGICCTANDMTRYYQKAKIVSALGRQLKV 298
Query: 163 EKAVVA 168
+A +A
Sbjct: 299 IRAGLA 304
>sp|P37896|AMPN_LACDL Aminopeptidase N OS=Lactobacillus delbrueckii subsp. lactis GN=pepN
PE=1 SV=3
Length = 843
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 78 SHTKKPFVFYLDLAKRYIKQYNDIELT------ALGMAIPTVVTIAEALKRDGLASNKEV 131
+HT+K F LD+AKR I+ Y D T +L +A+P A A++ GL + +E
Sbjct: 208 AHTEKELTFSLDIAKRAIEFYEDFYQTPYPLPQSLQLALPDFS--AGAMENWGLVTYREA 265
Query: 132 KI 133
+
Sbjct: 266 YL 267
>sp|P50944|AVT4_YEAST Vacuolar amino acid transporter 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=AVT4 PE=1 SV=1
Length = 713
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 28 SKNKKVATVAAAVVDSGDGKNATTTGGAGAESSSVIKKTKKKKDSNRI 75
+KN +T+AAA VDS D + T AG + + I K K +D R+
Sbjct: 115 TKNSSASTIAAANVDSDD--DETNLSSAGGDITHDIYKLVKAEDPKRL 160
>sp|Q2NGY4|ATGT_METST tRNA-guanine(15) transglycosylase OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=tgtA PE=3 SV=1
Length = 674
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 52 TGGAGAESSSVIKKTK-----KKKDSNRILVSHTKKPFVFYLDLAKRYIKQY 98
TG S V K K K K+ N +++ HT+KP+ Y++ + YIK+Y
Sbjct: 367 TGYESLARSEVPKHLKQLENIKPKNKNLVILPHTRKPYTKYVN--REYIKKY 416
>sp|Q971T6|ALBA2_SULTO DNA/RNA-binding protein Alba 2 OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=albA2 PE=3 SV=1
Length = 90
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 70 KDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALK 121
K N IL+S TK+ + LD+ + + Y+++EL +G +I V + LK
Sbjct: 4 KKPNEILISRTKRVEDYVLDVIVMFNQGYDEVELKGVGNSIYKAVEVYNQLK 55
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.121 0.306
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,533,448
Number of Sequences: 539616
Number of extensions: 2244113
Number of successful extensions: 7083
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 7021
Number of HSP's gapped (non-prelim): 114
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 57 (26.6 bits)