Query 044680
Match_columns 182
No_of_seqs 95 out of 97
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 09:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vm0_A Unknown protein; struct 100.0 1.8E-37 6E-42 245.2 11.5 111 69-179 17-127 (130)
2 1nfj_A ALBA, conserved hypothe 99.9 2.7E-23 9.2E-28 153.8 10.0 85 71-158 2-89 (89)
3 1nh9_A MJA10B, DNA-binding pro 99.9 6.9E-23 2.3E-27 151.1 10.1 84 72-158 2-87 (87)
4 2bky_A DNA/RNA-binding protein 99.9 1.2E-22 4E-27 152.7 10.3 86 71-159 8-97 (97)
5 3toe_A MTH10B, DNA/RNA-binding 99.8 5.1E-21 1.8E-25 143.3 10.4 81 77-158 7-90 (91)
6 2h9u_A DNA/RNA-binding protein 99.8 4.1E-21 1.4E-25 145.5 9.8 88 72-161 6-100 (102)
7 2bky_X DNA/RNA-binding protein 99.8 3.8E-19 1.3E-23 132.1 9.0 82 70-159 4-88 (89)
8 3iab_B Ribonucleases P/MRP pro 97.8 0.00011 3.6E-09 58.9 9.5 68 71-140 29-101 (140)
9 2ek0_A Stage V sporulation pro 82.7 3.4 0.00012 30.8 6.1 81 73-158 2-87 (90)
10 3iab_A Ribonucleases P/MRP pro 64.2 15 0.00052 29.7 6.1 84 77-163 49-149 (158)
11 1ve4_A ATP phosphoribosyltrans 30.0 7.9 0.00027 32.0 -0.9 53 86-138 114-179 (206)
12 1z7m_E ATP phosphoribosyltrans 23.7 43 0.0015 27.5 2.5 60 73-138 109-181 (208)
13 1o63_A ATP phosphoribosyltrans 22.1 53 0.0018 27.4 2.8 60 74-139 103-175 (219)
14 1h3d_A ATP-phosphoribosyltrans 21.9 13 0.00044 32.3 -1.1 54 85-138 129-195 (299)
No 1
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=100.00 E-value=1.8e-37 Score=245.24 Aligned_cols=111 Identities=52% Similarity=0.783 Sum_probs=91.8
Q ss_pred cCCCCeEEEecCCCchhhhHHHHHHHhhhCCeEEEeecccchhhHHHHHHhhhhcCcceeeEEEEeeEEecCCCCCcccc
Q 044680 69 KKDSNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKKDDEGRFFQ 148 (182)
Q Consensus 69 ~~~~N~I~VS~~KKPl~fYV~lAK~lLq~~~EVeLsALG~AIstAV~VAEILKrrglatikKI~TsTv~ied~~~GR~~~ 148 (182)
.+++|+|+|+.+|+|+||||+++++||+.|++|+|||||+||++||+||||||||+++++++|.|+|++++++..||+.+
T Consensus 17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~~~~r~v~ 96 (130)
T 1vm0_A 17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDDARGRPVQ 96 (130)
T ss_dssp --CTTEEECCCTTSCHHHHHHHHHHHHHHHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC------CEE
T ss_pred CCCCCEEEEecCCCCceeHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccCCCCcccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999876789899
Q ss_pred eeeEEEEEeeccchHHHHhhccCCCCCCCcc
Q 044680 149 KAKIQIVLGKAEKLEKAVVATTAPKETSDTD 179 (182)
Q Consensus 149 kaKIEIvL~Ks~dFd~~~~~~~~~~e~~~~~ 179 (182)
+|||||+|.|+++||++|+++++++|+.+.+
T Consensus 97 ~skIEI~L~k~~~fd~~~~~~~~~~~~~~~~ 127 (130)
T 1vm0_A 97 KAKIEITLVKSEKFDELMAAANEEKEDAETQ 127 (130)
T ss_dssp EEEEEEEEEECTTHHHHHHHC----------
T ss_pred cceEEEEEEecCcHHHHHHHhhhhhcccccc
Confidence 9999999999999999999999999987664
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.89 E-value=2.7e-23 Score=153.79 Aligned_cols=85 Identities=27% Similarity=0.397 Sum_probs=77.2
Q ss_pred CCCeEEEecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcc-e-eeEEEEeeEEecCCCCCccc
Q 044680 71 DSNRILVSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLA-S-NKEVKISTVNSKKDDEGRFF 147 (182)
Q Consensus 71 ~~N~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgla-t-ikKI~TsTv~ied~~~GR~~ 147 (182)
.+|.|+|. +||.|+||.++.++|++ +++|+|+|+|+||++||+||||||+|+++ . +++|+|+|++++++ +||.+
T Consensus 2 ~~n~I~V~--~k~v~~yV~~~~~~l~~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~e-~g~~r 78 (89)
T 1nfj_A 2 AEHVVYVG--NKPVMNYVLATLTQLNEGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELESE-QGRRS 78 (89)
T ss_dssp -CEEEECC--SSCHHHHHHHHHHHHHTTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCCB-TTBCC
T ss_pred CCCEEEEc--CCCHHHHHHHHHHHHhCCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEcC-CCcEE
Confidence 36888887 58899999999999998 99999999999999999999999999964 3 59999999999886 69999
Q ss_pred ceeeEEEEEee
Q 044680 148 QKAKIQIVLGK 158 (182)
Q Consensus 148 ~kaKIEIvL~K 158 (182)
++|.|+|+|.|
T Consensus 79 ~vs~IeI~L~k 89 (89)
T 1nfj_A 79 NVSTIEIVLAK 89 (89)
T ss_dssp EEEEEEEEEEC
T ss_pred EeeEEEEEEEC
Confidence 99999999986
No 3
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.89 E-value=6.9e-23 Score=151.07 Aligned_cols=84 Identities=26% Similarity=0.395 Sum_probs=71.1
Q ss_pred CCeEEEecCCCchhhhHHHHHHHhhhCCeEEEeecccchhhHHHHHHhhhhcCcc-e-eeEEEEeeEEecCCCCCcccce
Q 044680 72 SNRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLA-S-NKEVKISTVNSKKDDEGRFFQK 149 (182)
Q Consensus 72 ~N~I~VS~~KKPl~fYV~lAK~lLq~~~EVeLsALG~AIstAV~VAEILKrrgla-t-ikKI~TsTv~ied~~~GR~~~k 149 (182)
+|.|+|..+ |.|+||.++.++|++.++|+|+|+|+||++||+||||||+|+++ . +++|+|+|+.++++ +||.+++
T Consensus 2 ~n~I~V~~k--~v~~YV~~~~~~l~~g~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~e-~g~~r~v 78 (87)
T 1nh9_A 2 DNVVLIGKK--PVMNYVVAVLTQLTSNDEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKNP-DGREVNV 78 (87)
T ss_dssp CSEEEECSS--CHHHHHHHHHHHHHHCSEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC--------CCCE
T ss_pred CCEEEEeCc--chHHHHHHHHHHhcCCCEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEcC-CCcEEEe
Confidence 588888744 99999999999999999999999999999999999999999965 3 59999999999986 6999999
Q ss_pred eeEEEEEee
Q 044680 150 AKIQIVLGK 158 (182)
Q Consensus 150 aKIEIvL~K 158 (182)
|.|||+|.|
T Consensus 79 S~IeI~L~k 87 (87)
T 1nh9_A 79 STIEIVLAK 87 (87)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEC
Confidence 999999985
No 4
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.88 E-value=1.2e-22 Score=152.67 Aligned_cols=86 Identities=28% Similarity=0.387 Sum_probs=78.4
Q ss_pred CCCeEEEecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcc--e-eeEEEEeeEEecCCCCCcc
Q 044680 71 DSNRILVSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLA--S-NKEVKISTVNSKKDDEGRF 146 (182)
Q Consensus 71 ~~N~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgla--t-ikKI~TsTv~ied~~~GR~ 146 (182)
.+|.|+|. +||+|+||.++.++|++ +++|+|+|+|+||++||+||||||||+++ . +++|+|+|++++++ +|+.
T Consensus 8 ~~n~I~V~--~k~v~~YV~~a~~ll~~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~e-~G~~ 84 (97)
T 2bky_A 8 PSNVVLIG--KKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTSQ-DGRQ 84 (97)
T ss_dssp -CCEEECC--SSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEET-TSCE
T ss_pred CCCEEEEc--CcCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEecC-CCcE
Confidence 46888775 77899999999999998 99999999999999999999999999987 4 79999999999886 6999
Q ss_pred cceeeEEEEEeec
Q 044680 147 FQKAKIQIVLGKA 159 (182)
Q Consensus 147 ~~kaKIEIvL~Ks 159 (182)
++++.|+|+|.|.
T Consensus 85 r~vS~IeI~L~k~ 97 (97)
T 2bky_A 85 SRVSTIEIAIRKK 97 (97)
T ss_dssp EEEEEEEEEEEEC
T ss_pred EEeeEEEEEEEcC
Confidence 9999999999874
No 5
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.85 E-value=5.1e-21 Score=143.28 Aligned_cols=81 Identities=25% Similarity=0.299 Sum_probs=75.4
Q ss_pred EecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCc--ceeeEEEEeeEEecCCCCCcccceeeEE
Q 044680 77 VSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGL--ASNKEVKISTVNSKKDDEGRFFQKAKIQ 153 (182)
Q Consensus 77 VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgl--atikKI~TsTv~ied~~~GR~~~kaKIE 153 (182)
|..++||.|+||.++..+|++ +++|+|+|+|+||++||+||||||+|.+ ..+++|.++|..++.+ +|+.++++.||
T Consensus 7 v~vg~Kpv~~YV~~~i~~~n~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~v~v~~I~I~se~~~~e-~G~~r~VS~Ie 85 (91)
T 3toe_A 7 VYIGNKPVMNYVLAVVTQMNGGTSEVILKARGIAISRAVDVAEIVRNRFIPDIQIENIDICTEEIIGN-EGTATNVSAIE 85 (91)
T ss_dssp EECCSSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEEEECT-TSSEEEEEEEE
T ss_pred EEECCCcHHHHHHHHHHHHhCCCCEEEEEEehhHHHHHHHHHHHHHHhccCCcEEEEEEeeeEEeecC-CCceeEeeEEE
Confidence 556899999999999999986 9999999999999999999999999988 6688999999999875 79999999999
Q ss_pred EEEee
Q 044680 154 IVLGK 158 (182)
Q Consensus 154 IvL~K 158 (182)
|+|.|
T Consensus 86 I~L~k 90 (91)
T 3toe_A 86 IQLRK 90 (91)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99987
No 6
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.85 E-value=4.1e-21 Score=145.54 Aligned_cols=88 Identities=23% Similarity=0.320 Sum_probs=78.0
Q ss_pred CCeEEEecCCCchhhhHHHHH-HHhhh-CCeEEEeecccchhhHHHHHHhhhhcCc-cee-eEEEEeeEEecCCC-CCc-
Q 044680 72 SNRILVSHTKKPFVFYLDLAK-RYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGL-ASN-KEVKISTVNSKKDD-EGR- 145 (182)
Q Consensus 72 ~N~I~VS~~KKPl~fYV~lAK-~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgl-ati-kKI~TsTv~ied~~-~GR- 145 (182)
+|.|+| ++||.|+||.++. ++|++ +++|+|+|+|+||++||+||||||||++ +.+ ++|+|+|+.++++- +|+
T Consensus 6 ~n~I~V--~~k~~~nyV~~a~~~ll~~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e~g~~ 83 (102)
T 2h9u_A 6 APEVRI--GRKPVMNYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTPEGQT 83 (102)
T ss_dssp CCEEEC--CSSCHHHHHHHHHHHHTSTTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECTTSCE
T ss_pred CCEEEE--cCCCHHHHHHHHHHHHHhCCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEeccccCCcc
Confidence 577776 5778899999999 99988 9999999999999999999999999995 555 99999999988741 577
Q ss_pred -ccceeeEEEEEeeccc
Q 044680 146 -FFQKAKIQIVLGKAEK 161 (182)
Q Consensus 146 -~~~kaKIEIvL~Ks~d 161 (182)
.+++|.|+|+|.|.|.
T Consensus 84 ~~r~vS~IeI~Lsk~~~ 100 (102)
T 2h9u_A 84 RTRRVSSIEICLEKAGE 100 (102)
T ss_dssp EEEEEEEEEEEEEECSS
T ss_pred ceeEeeeEEEEEEccCC
Confidence 7999999999999874
No 7
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.79 E-value=3.8e-19 Score=132.06 Aligned_cols=82 Identities=15% Similarity=0.039 Sum_probs=70.8
Q ss_pred CCCCeEEEecCCCchhhhHHHHHHHhhh-CCeEEEeecccchhhHHHHHHhhhhcCcc--eeeEEEEeeEEecCCCCCcc
Q 044680 70 KDSNRILVSHTKKPFVFYLDLAKRYIKQ-YNDIELTALGMAIPTVVTIAEALKRDGLA--SNKEVKISTVNSKKDDEGRF 146 (182)
Q Consensus 70 ~~~N~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLsALG~AIstAV~VAEILKrrgla--tikKI~TsTv~ied~~~GR~ 146 (182)
+++|.|.| +++|.|+||.++..+|++ .++|+|+|+|+||++||+|||||++|.+. .+++|.++++. |+.
T Consensus 4 ~~~~iv~v--g~kpv~nYV~~~~~~ln~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se~------~~~ 75 (89)
T 2bky_X 4 KLNEIVVR--KTKNVEDHVLDVIVLFNQGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSEV------RDR 75 (89)
T ss_dssp CCEEEECC--TTSCHHHHHHHHHHHHHTTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEEE------ETT
T ss_pred CCCCEEEE--CCCCHHHHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecccc------Ccc
Confidence 44555554 456999999999999998 89999999999999999999999999874 58889999876 566
Q ss_pred cceeeEEEEEeec
Q 044680 147 FQKAKIQIVLGKA 159 (182)
Q Consensus 147 ~~kaKIEIvL~Ks 159 (182)
+++|.|+|+|.|.
T Consensus 76 r~VS~IeI~L~k~ 88 (89)
T 2bky_X 76 RRISYILLRLKRV 88 (89)
T ss_dssp EEEEEEEEEEEEC
T ss_pred eEeeeEEEEEEec
Confidence 8999999999874
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00011 Score=58.86 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=54.9
Q ss_pred CCCeEEEecCCCchhhhHHHHHHHhhh-----CCeEEEeecccchhhHHHHHHhhhhcCcceeeEEEEeeEEecC
Q 044680 71 DSNRILVSHTKKPFVFYLDLAKRYIKQ-----YNDIELTALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSKK 140 (182)
Q Consensus 71 ~~N~I~VS~~KKPl~fYV~lAK~lLq~-----~~EVeLsALG~AIstAV~VAEILKrrglatikKI~TsTv~ied 140 (182)
.+|.|-|+ .+-|++.=+.=+..||.+ ..+|.|+|||.||.+|+.+|=-+++++ ...-.|+|+|+.+-|
T Consensus 29 ~~~~iYV~-skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~V~T~TV~vvD 101 (140)
T 3iab_B 29 IHTTIFVK-STTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIEVYTKTIEVLD 101 (140)
T ss_dssp HTTEEECC-SSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEEEEEEEEEEEE
T ss_pred cCceEEEe-cCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEEEEeceEEEEE
Confidence 37788888 678866666666778886 799999999999999999999999875 355569999986544
No 9
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=82.65 E-value=3.4 Score=30.78 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=53.3
Q ss_pred CeEEEecCCCchhhhHHHHHHHhhhCCeEEEeeccc-chhhHHHHHHhhhhcCcceeeEEEEee----EEecCCCCCccc
Q 044680 73 NRILVSHTKKPFVFYLDLAKRYIKQYNDIELTALGM-AIPTVVTIAEALKRDGLASNKEVKIST----VNSKKDDEGRFF 147 (182)
Q Consensus 73 N~I~VS~~KKPl~fYV~lAK~lLq~~~EVeLsALG~-AIstAV~VAEILKrrglatikKI~TsT----v~ied~~~GR~~ 147 (182)
..+.||.+.+|. ...-..--.|.+.+.|+|.|.|- |++.||...-|- |++..-..+.... .+++- +|+.+
T Consensus 2 e~LKVSs~S~P~-~VAGAIA~~lRe~~~veiqAIGa~AvNqAVKAIAIA--Rg~l~~~g~Dl~~~PaF~~v~i--dge~r 76 (90)
T 2ek0_A 2 ETLRVSSKSRPN-SVAGAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIA--RGYIAPDNLDLVVKPAFVKLEL--ENEER 76 (90)
T ss_dssp CEEEECTTCCHH-HHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHHH--HHHHGGGTEEEEEEEEEEEEEE--TTEEE
T ss_pred ceEEEcCCCChH-HHHHHHHHHHhcCCceEEEEECHHHHHHHHHHHHHH--HHhhcccCceEEEeeeeEEEee--CCeEE
Confidence 368999999997 56666677888999999999998 999998877665 2332222233222 22222 35555
Q ss_pred ceeeEEEEEee
Q 044680 148 QKAKIQIVLGK 158 (182)
Q Consensus 148 ~kaKIEIvL~K 158 (182)
.--++.+...+
T Consensus 77 Taik~~v~~r~ 87 (90)
T 2ek0_A 77 TALKFSIKAHP 87 (90)
T ss_dssp EEEEEEEEEEE
T ss_pred EEEEEEEEEec
Confidence 66666655543
No 10
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=64.24 E-value=15 Score=29.75 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=53.1
Q ss_pred EecCCCchhhhHHHHHHHhh-------hCCeEEEeecccchhhHHHHHHhhhhc---C-cceeeEEEEeeEEecCCCCCc
Q 044680 77 VSHTKKPFVFYLDLAKRYIK-------QYNDIELTALGMAIPTVVTIAEALKRD---G-LASNKEVKISTVNSKKDDEGR 145 (182)
Q Consensus 77 VS~~KKPl~fYV~lAK~lLq-------~~~EVeLsALG~AIstAV~VAEILKrr---g-latikKI~TsTv~ied~~~GR 145 (182)
||..-.-. .+|.--..+|+ +.+-|.|-+.|..|.+++.+.||+|++ + ....+==...+..... .||
T Consensus 49 IsKNDnIK-~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~--~gr 125 (158)
T 3iab_A 49 ISKNDNIK-KSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKR--EGR 125 (158)
T ss_dssp CCTTCCHH-HHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC------
T ss_pred eccCchHH-HHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCC--ccc
Confidence 55444554 57777666674 467799999999999999999999983 2 1122222223332222 122
Q ss_pred ------ccceeeEEEEEeeccchH
Q 044680 146 ------FFQKAKIQIVLGKAEKLE 163 (182)
Q Consensus 146 ------~~~kaKIEIvL~Ks~dFd 163 (182)
..++|=+-+++.+++++|
T Consensus 126 NELle~r~~vPILi~~i~~~~~~~ 149 (158)
T 3iab_A 126 NELQEERLKVPILVTMVSDSEIID 149 (158)
T ss_dssp ---CCCCEEEEEEEEEEESSSSCC
T ss_pred cHHHHhhcCCCEEEEEEecccccc
Confidence 357777777788777655
No 11
>1ve4_A ATP phosphoribosyltransferase; riken structural genomics/proteomics initiative structural genomics; 1.20A {Thermus thermophilus} SCOP: c.94.1.1
Probab=30.04 E-value=7.9 Score=32.00 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=38.7
Q ss_pred hhHHHHHHHhhhCC-eEEE---e---------ecccchhhHHHHHHhhhhcCcceeeEEEEeeEEe
Q 044680 86 FYLDLAKRYIKQYN-DIEL---T---------ALGMAIPTVVTIAEALKRDGLASNKEVKISTVNS 138 (182)
Q Consensus 86 fYV~lAK~lLq~~~-EVeL---s---------ALG~AIstAV~VAEILKrrglatikKI~TsTv~i 138 (182)
-|.+++++||.+++ .++| . ||-.||-.-|..-.-|+.|||..+..|--++.-+
T Consensus 114 kyp~l~~~yf~~~gi~~~ii~l~GsvE~ap~~GlAD~IvDivsTG~TLraNgL~~ie~I~~ssA~L 179 (206)
T 1ve4_A 114 KYPNFTARLLKERGWAADVVELSGNIELAAVTGLADAVVDVVQTGATLRAAGLVEVEVLAHSTARL 179 (206)
T ss_dssp SCHHHHHHHHHHTTCCCEEEECSSCTHHHHHTTSSSEEEEEESSSHHHHHTTCEEEEEEEEECEEE
T ss_pred CchHHHHHHHHHCCCcEEEEECCCceeeccCCCCceEEEEeccCHHHHHHCCCEEeEEEEeeEEEE
Confidence 59999999998832 1222 2 3445777777788899999999988887776644
No 12
>1z7m_E ATP phosphoribosyltransferase; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: c.94.1.1 PDB: 1z7n_E*
Probab=23.69 E-value=43 Score=27.53 Aligned_cols=60 Identities=23% Similarity=0.343 Sum_probs=43.1
Q ss_pred CeEEEecCCCchhhhHHHHHHHhhhCC-eEEEe------------ecccchhhHHHHHHhhhhcCcceeeEEEEeeEEe
Q 044680 73 NRILVSHTKKPFVFYLDLAKRYIKQYN-DIELT------------ALGMAIPTVVTIAEALKRDGLASNKEVKISTVNS 138 (182)
Q Consensus 73 N~I~VS~~KKPl~fYV~lAK~lLq~~~-EVeLs------------ALG~AIstAV~VAEILKrrglatikKI~TsTv~i 138 (182)
...+|- --|.+++++||.+++ .++|. ||-.||-.-|..-.-|+.|||..+..|.-++.-+
T Consensus 109 ~~~RIA------Tkyp~l~~~yf~~~gi~~~ii~l~GsvE~ap~~GlAD~IvDivsTG~TLr~NgL~~ie~I~~ssA~L 181 (208)
T 1z7m_E 109 RHKRIA------SKYPRVTKKYFAQKQEDIEIIKLEGSVELGPVVGLADAIVDIVETGNTLSANGLEVIEKISDISTRM 181 (208)
T ss_dssp SCEEEE------ESCHHHHHHHHHHTTCCEEEEECSSCTTHHHHTTSCSEEEEEESSSHHHHTTTCEEEEEEEECCEEE
T ss_pred CCCEEE------ECchHHHHHHHHHcCCceEEEECCCceeeccCCCcccEEEEEeCChHHHHHCCCEEeEEEEeeEEEE
Confidence 456665 359999999998832 24433 3445777777788899999999988887766543
No 13
>1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H*
Probab=22.13 E-value=53 Score=27.35 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=42.6
Q ss_pred eEEEecCCCchhhhHHHHHHHhhh-CCeEEEe------------ecccchhhHHHHHHhhhhcCcceeeEEEEeeEEec
Q 044680 74 RILVSHTKKPFVFYLDLAKRYIKQ-YNDIELT------------ALGMAIPTVVTIAEALKRDGLASNKEVKISTVNSK 139 (182)
Q Consensus 74 ~I~VS~~KKPl~fYV~lAK~lLq~-~~EVeLs------------ALG~AIstAV~VAEILKrrglatikKI~TsTv~ie 139 (182)
..+|- --|.+++++||.+ .-.++|- ||-.||-..|..-.-|+.|||..+..|.-++.-+=
T Consensus 103 ~~RIA------Tkyp~l~r~yf~~~Gi~~~Ii~l~GsvE~aP~~GlADaIvDivsTG~TLraNgL~~ie~I~~SsA~LI 175 (219)
T 1o63_A 103 EKRIA------TKFPNVTQRYCESKGWHCRIIPLKGSVELAPIAGLSDLIVDITETGRTLKENNLEILDEIFVIRTHVV 175 (219)
T ss_dssp CEEEE------ESCHHHHHHHHHHHTCCEEEEECSSCTTHHHHHTSCSEEEEEESSSHHHHHTTEEEEEEEEEEEEEEE
T ss_pred CcEEE------ECcHHHHHHHHHHCCCceEEEECCCceeeccCCCCcceeEEeeccHHHHHHCCCEEeeEEeeeEEEEE
Confidence 56665 2599999999988 2224443 34446777777778899999999888877776543
No 14
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=21.86 E-value=13 Score=32.28 Aligned_cols=54 Identities=28% Similarity=0.314 Sum_probs=37.7
Q ss_pred hhhHHHHHHHhhhCC----eEEEe---------ecccchhhHHHHHHhhhhcCcceeeEEEEeeEEe
Q 044680 85 VFYLDLAKRYIKQYN----DIELT---------ALGMAIPTVVTIAEALKRDGLASNKEVKISTVNS 138 (182)
Q Consensus 85 ~fYV~lAK~lLq~~~----EVeLs---------ALG~AIstAV~VAEILKrrglatikKI~TsTv~i 138 (182)
--|.+++++||.+++ -|.|. ||-.||-.-|..-.-|+.|||..+..|--++.-+
T Consensus 129 Tkyp~l~~~yf~~~gi~~~ii~l~GsvE~aP~~GlADaIvDivsTG~TLraNgL~~ie~I~~SsA~L 195 (299)
T 1h3d_A 129 TSYPHLLKRYLDQKGISFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACL 195 (299)
T ss_dssp ESCHHHHHHHHHHHTCCCEEEECSSCTTHHHHTTSCSEEEEEESSCHHHHHTTEEEEEEEEEECEEE
T ss_pred eCcHHHHHHHHHHcCCcEEEEECCCceeeccCCCccceEEecccCHHHHHHCCCEEeEEEEeeEEEE
Confidence 359999999998821 22222 3334666666677799999999888887776543
Done!