Query 044681
Match_columns 184
No_of_seqs 130 out of 1141
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00730 conserved hypothetic 100.0 5.8E-47 1.3E-51 308.2 18.5 149 12-160 1-178 (178)
2 COG1611 Predicted Rossmann fol 100.0 1.8E-39 3.9E-44 269.5 18.5 155 8-163 11-198 (205)
3 TIGR00725 conserved hypothetic 100.0 4.7E-37 1E-41 245.8 17.2 119 11-142 1-120 (159)
4 PF03641 Lysine_decarbox: Poss 100.0 1.4E-30 3E-35 202.4 12.2 87 56-142 1-89 (133)
5 TIGR00732 dprA DNA protecting 99.6 1.2E-13 2.6E-18 115.9 15.3 122 12-142 45-186 (220)
6 PF02481 DNA_processg_A: DNA r 99.1 1.3E-09 2.9E-14 90.9 12.4 123 11-142 44-186 (212)
7 PRK10736 hypothetical protein; 99.0 2.1E-08 4.5E-13 90.4 14.6 139 12-159 108-285 (374)
8 COG0758 Smf Predicted Rossmann 98.7 6E-07 1.3E-11 80.4 13.9 122 12-142 112-252 (350)
9 PF12694 MoCo_carrier: Putativ 96.0 0.2 4.4E-06 39.9 11.7 108 46-160 1-114 (145)
10 PF06908 DUF1273: Protein of u 95.0 0.92 2E-05 37.0 12.6 105 11-115 1-137 (177)
11 PF05014 Nuc_deoxyrib_tr: Nucl 94.6 0.074 1.6E-06 39.5 4.9 44 94-143 48-95 (113)
12 PRK10565 putative carbohydrate 92.6 0.6 1.3E-05 43.9 8.3 95 42-142 254-352 (508)
13 PF11071 DUF2872: Protein of u 91.8 1.6 3.4E-05 34.5 8.3 55 98-158 63-137 (141)
14 PLN02605 monogalactosyldiacylg 91.8 3.6 7.7E-05 36.4 11.8 51 101-161 276-345 (382)
15 COG0707 MurG UDP-N-acetylgluco 91.6 2.4 5.2E-05 38.2 10.6 57 96-162 241-323 (357)
16 PRK13608 diacylglycerol glucos 91.1 2.9 6.2E-05 37.3 10.5 53 99-161 265-336 (391)
17 cd03785 GT1_MurG MurG is an N- 90.8 9.4 0.0002 32.4 14.2 53 99-161 244-322 (350)
18 PF10686 DUF2493: Protein of u 90.7 3.1 6.7E-05 29.0 8.3 63 12-77 4-67 (71)
19 PF13528 Glyco_trans_1_3: Glyc 90.0 6.3 0.00014 33.3 11.3 84 42-143 192-276 (318)
20 PRK13660 hypothetical protein; 89.7 10 0.00022 31.2 15.9 142 11-160 1-178 (182)
21 TIGR03646 YtoQ_fam YtoQ family 89.1 3.4 7.4E-05 32.7 8.1 58 98-158 66-140 (144)
22 TIGR01426 MGT glycosyltransfer 87.3 14 0.00031 32.5 12.1 29 104-142 288-316 (392)
23 PRK00025 lpxB lipid-A-disaccha 87.2 9.4 0.0002 33.1 10.8 30 102-142 256-285 (380)
24 COG1597 LCB5 Sphingosine kinas 87.0 1.4 2.9E-05 38.7 5.4 46 31-77 46-92 (301)
25 PRK13609 diacylglycerol glucos 86.7 15 0.00031 32.1 11.7 54 99-162 265-337 (380)
26 TIGR01133 murG undecaprenyldip 86.2 20 0.00043 30.4 14.3 30 103-142 246-275 (348)
27 PRK12446 undecaprenyldiphospho 85.7 19 0.00041 31.9 12.0 30 103-142 248-277 (352)
28 PRK11914 diacylglycerol kinase 81.7 27 0.00058 30.0 11.1 44 111-159 67-122 (306)
29 cd00587 HCP_like The HCP famil 81.7 21 0.00045 31.1 10.2 41 9-51 92-132 (258)
30 PRK05749 3-deoxy-D-manno-octul 80.8 40 0.00088 29.9 14.6 62 91-161 304-386 (425)
31 TIGR00215 lpxB lipid-A-disacch 80.6 33 0.00071 30.6 11.6 28 104-142 264-291 (385)
32 TIGR03590 PseG pseudaminic aci 80.3 36 0.00078 29.0 12.3 40 98-149 232-271 (279)
33 TIGR00196 yjeF_cterm yjeF C-te 79.1 15 0.00033 31.1 8.6 41 99-142 84-124 (272)
34 PF04101 Glyco_tran_28_C: Glyc 79.1 2.1 4.5E-05 33.2 3.0 31 102-142 67-97 (167)
35 cd03784 GT1_Gtf_like This fami 77.5 34 0.00074 29.9 10.6 30 103-142 300-329 (401)
36 PF00885 DMRL_synthase: 6,7-di 73.4 16 0.00035 28.7 6.7 52 107-158 62-120 (144)
37 TIGR00661 MJ1255 conserved hyp 73.3 59 0.0013 27.9 12.2 82 43-142 189-272 (321)
38 PRK02261 methylaspartate mutas 72.6 42 0.00092 25.9 10.5 115 27-162 15-135 (137)
39 cd03786 GT1_UDP-GlcNAc_2-Epime 71.7 63 0.0014 27.5 14.7 55 98-163 268-337 (363)
40 COG2185 Sbm Methylmalonyl-CoA 71.4 12 0.00027 29.7 5.5 46 28-74 25-70 (143)
41 TIGR00060 L18_bact ribosomal p 70.6 14 0.0003 28.3 5.5 39 29-67 65-111 (114)
42 cd04908 ACT_Bt0572_1 N-termina 70.2 21 0.00045 23.5 5.8 50 110-160 4-60 (66)
43 PRK00861 putative lipid kinase 69.6 11 0.00023 32.4 5.3 44 32-77 46-90 (300)
44 PF00781 DAGK_cat: Diacylglyce 69.5 9.7 0.00021 28.5 4.5 46 31-77 41-91 (130)
45 PRK13337 putative lipid kinase 69.3 13 0.00028 32.1 5.7 45 31-76 45-91 (304)
46 TIGR00640 acid_CoA_mut_C methy 68.8 51 0.0011 25.3 9.5 111 26-159 13-125 (132)
47 KOG4022 Dihydropteridine reduc 68.7 28 0.00061 29.0 7.2 70 42-118 3-83 (236)
48 TIGR03702 lip_kinase_YegS lipi 67.6 13 0.00029 31.8 5.5 45 31-76 40-88 (293)
49 PRK13054 lipid kinase; Reviewe 67.0 14 0.00031 31.7 5.6 44 32-76 45-92 (300)
50 PRK13057 putative lipid kinase 65.4 9.4 0.0002 32.6 4.1 48 106-159 49-107 (287)
51 COG1832 Predicted CoA-binding 65.3 12 0.00026 29.7 4.3 33 10-47 15-47 (140)
52 PF13607 Succ_CoA_lig: Succiny 64.2 17 0.00038 28.3 5.1 48 108-158 55-136 (138)
53 PRK00861 putative lipid kinase 64.2 11 0.00023 32.5 4.2 46 108-159 58-114 (300)
54 PRK13055 putative lipid kinase 63.3 18 0.00038 31.9 5.5 45 31-76 47-93 (334)
55 PTZ00032 60S ribosomal protein 62.4 18 0.0004 30.5 5.1 39 29-67 162-208 (211)
56 PRK11914 diacylglycerol kinase 61.8 19 0.0004 31.0 5.3 44 31-76 52-96 (306)
57 PRK13059 putative lipid kinase 61.2 14 0.0003 31.8 4.4 50 106-159 55-115 (295)
58 COG4671 Predicted glycosyl tra 61.0 59 0.0013 29.9 8.4 37 96-142 283-319 (400)
59 TIGR01506 ribC_arch riboflavin 60.9 27 0.0006 28.0 5.7 53 106-159 53-110 (151)
60 COG2081 Predicted flavoprotein 60.6 7.2 0.00016 36.0 2.6 28 44-73 5-32 (408)
61 TIGR03702 lip_kinase_YegS lipi 60.6 34 0.00074 29.3 6.7 50 108-159 53-113 (293)
62 PLN02404 6,7-dimethyl-8-ribity 60.4 32 0.00069 27.2 5.9 53 106-158 65-124 (141)
63 PRK13054 lipid kinase; Reviewe 60.3 36 0.00077 29.3 6.8 51 107-159 56-117 (300)
64 PF00861 Ribosomal_L18p: Ribos 60.0 38 0.00083 25.7 6.2 40 29-68 70-117 (119)
65 PRK02155 ppnK NAD(+)/NADH kina 59.8 62 0.0013 28.2 8.2 62 8-73 2-93 (291)
66 PF01820 Dala_Dala_lig_N: D-al 58.9 13 0.00027 28.0 3.3 36 12-47 1-36 (117)
67 cd00432 Ribosomal_L18_L5e Ribo 58.7 28 0.0006 25.5 5.1 39 29-67 56-102 (103)
68 PRK14569 D-alanyl-alanine synt 58.2 27 0.00059 30.0 5.7 38 11-48 3-40 (296)
69 PRK08105 flavodoxin; Provision 58.1 22 0.00047 27.7 4.7 34 11-47 1-34 (149)
70 PLN02958 diacylglycerol kinase 57.5 23 0.0005 33.1 5.5 45 31-76 156-207 (481)
71 PRK09004 FMN-binding protein M 57.3 20 0.00042 27.9 4.3 34 11-47 1-34 (146)
72 TIGR00147 lipid kinase, YegS/R 57.1 76 0.0017 26.9 8.2 31 45-76 60-91 (293)
73 PF01256 Carb_kinase: Carbohyd 56.9 1.2E+02 0.0026 25.6 10.0 108 46-159 2-133 (242)
74 cd03808 GT1_cap1E_like This fa 56.9 38 0.00082 27.4 6.1 53 103-161 259-327 (359)
75 CHL00139 rpl18 ribosomal prote 56.6 32 0.0007 25.9 5.2 39 29-67 60-106 (109)
76 COG1597 LCB5 Sphingosine kinas 56.4 17 0.00037 31.8 4.2 47 109-160 59-118 (301)
77 cd00411 Asparaginase Asparagin 56.2 30 0.00064 30.6 5.7 33 107-142 78-110 (323)
78 PRK13059 putative lipid kinase 55.5 83 0.0018 27.0 8.3 37 39-76 52-90 (295)
79 COG0300 DltE Short-chain dehyd 55.0 53 0.0012 28.6 6.9 61 10-78 5-65 (265)
80 COG3613 Nucleoside 2-deoxyribo 54.7 28 0.00061 28.5 4.9 43 97-145 58-106 (172)
81 cd01171 YXKO-related B.subtili 54.5 73 0.0016 26.3 7.6 37 103-142 73-109 (254)
82 TIGR01501 MthylAspMutase methy 54.4 1E+02 0.0022 24.0 12.8 116 27-161 13-132 (134)
83 PRK13337 putative lipid kinase 54.4 39 0.00084 29.1 6.1 48 108-159 58-116 (304)
84 smart00046 DAGKc Diacylglycero 54.4 17 0.00037 27.3 3.4 19 111-129 52-70 (124)
85 cd07025 Peptidase_S66 LD-Carbo 54.3 1.1E+02 0.0023 26.4 8.8 46 96-142 46-96 (282)
86 PF13692 Glyco_trans_1_4: Glyc 54.0 80 0.0017 22.7 7.3 55 100-160 63-132 (135)
87 PRK08862 short chain dehydroge 53.9 78 0.0017 25.8 7.6 54 12-73 6-59 (227)
88 COG1057 NadD Nicotinic acid mo 53.8 20 0.00044 29.7 4.0 41 10-50 1-42 (197)
89 PF00534 Glycos_transf_1: Glyc 53.6 93 0.002 23.3 7.5 58 98-161 83-156 (172)
90 PHA03392 egt ecdysteroid UDP-g 53.5 2E+02 0.0043 27.0 11.4 122 5-142 258-389 (507)
91 PRK05866 short chain dehydroge 53.5 72 0.0016 27.0 7.5 54 12-73 41-94 (293)
92 TIGR00519 asnASE_I L-asparagin 53.3 35 0.00075 30.4 5.7 34 106-142 76-109 (336)
93 TIGR00114 lumazine-synth 6,7-d 52.7 49 0.0011 26.0 5.8 55 106-160 58-119 (138)
94 PRK04539 ppnK inorganic polyph 52.7 97 0.0021 27.2 8.3 62 9-74 3-99 (296)
95 cd04951 GT1_WbdM_like This fam 52.5 45 0.00097 27.8 6.0 53 103-161 258-324 (360)
96 TIGR01182 eda Entner-Doudoroff 52.4 75 0.0016 26.5 7.2 108 11-130 8-120 (204)
97 COG3573 Predicted oxidoreducta 52.2 36 0.00078 31.5 5.6 85 44-136 141-246 (552)
98 PRK14572 D-alanyl-alanine synt 51.6 30 0.00065 30.5 5.0 39 11-49 1-39 (347)
99 cd03820 GT1_amsD_like This fam 51.2 86 0.0019 25.1 7.4 57 98-162 243-318 (348)
100 cd03804 GT1_wbaZ_like This fam 50.7 80 0.0017 26.7 7.4 58 98-163 252-326 (351)
101 PRK13057 putative lipid kinase 50.2 36 0.00079 29.0 5.2 44 31-76 39-82 (287)
102 PRK12419 riboflavin synthase s 50.1 52 0.0011 26.6 5.7 51 106-156 68-125 (158)
103 COG0703 AroK Shikimate kinase 50.0 41 0.00088 27.5 5.1 82 35-118 65-155 (172)
104 KOG2968 Predicted esterase of 49.9 10 0.00022 38.6 1.8 50 30-81 826-886 (1158)
105 PRK12361 hypothetical protein; 49.7 35 0.00076 32.1 5.4 43 32-76 286-329 (547)
106 PRK13055 putative lipid kinase 49.7 27 0.00058 30.7 4.3 48 108-159 60-119 (334)
107 PRK00208 thiG thiazole synthas 49.4 1.8E+02 0.0038 25.3 14.6 126 12-159 94-222 (250)
108 PF00781 DAGK_cat: Diacylglyce 49.1 23 0.0005 26.4 3.4 26 104-129 48-75 (130)
109 CHL00162 thiG thiamin biosynth 48.9 61 0.0013 28.4 6.3 127 12-159 108-236 (267)
110 PF09314 DUF1972: Domain of un 48.8 33 0.00071 28.2 4.5 36 11-46 1-37 (185)
111 COG0549 ArcC Carbamate kinase 48.7 50 0.0011 29.5 5.8 61 34-117 175-235 (312)
112 COG1819 Glycosyl transferases, 48.2 1.5E+02 0.0033 26.9 9.1 88 39-142 234-325 (406)
113 COG0593 DnaA ATPase involved i 48.2 1.3E+02 0.0027 28.0 8.6 103 30-142 96-213 (408)
114 cd04728 ThiG Thiazole synthase 48.1 1.9E+02 0.004 25.2 14.4 126 12-159 94-222 (248)
115 PRK07775 short chain dehydroge 47.8 1E+02 0.0022 25.5 7.5 36 8-51 7-42 (274)
116 cd03812 GT1_CapH_like This fam 47.7 72 0.0016 26.6 6.5 56 101-162 260-330 (358)
117 PF14359 DUF4406: Domain of un 47.7 45 0.00097 24.2 4.6 32 99-130 51-85 (92)
118 PRK12359 flavodoxin FldB; Prov 47.6 49 0.0011 26.7 5.3 22 57-78 102-123 (172)
119 cd07062 Peptidase_S66_mccF_lik 47.6 1.7E+02 0.0036 25.5 9.0 94 13-142 2-100 (308)
120 cd02072 Glm_B12_BD B12 binding 47.5 1.3E+02 0.0028 23.3 11.4 113 27-158 11-127 (128)
121 COG0569 TrkA K+ transport syst 47.3 1.5E+02 0.0032 24.7 8.3 91 46-142 4-97 (225)
122 PRK01231 ppnK inorganic polyph 46.9 1.2E+02 0.0026 26.5 8.0 60 10-73 3-92 (295)
123 PLN00141 Tic62-NAD(P)-related 46.9 43 0.00093 27.5 5.0 35 8-50 14-48 (251)
124 cd03822 GT1_ecORF704_like This 46.9 96 0.0021 25.5 7.1 55 99-162 259-333 (366)
125 PRK03378 ppnK inorganic polyph 46.6 1.4E+02 0.003 26.2 8.3 62 8-73 2-93 (292)
126 PRK00061 ribH 6,7-dimethyl-8-r 46.4 70 0.0015 25.5 5.9 52 107-158 71-129 (154)
127 cd03800 GT1_Sucrose_synthase T 46.1 65 0.0014 27.3 6.1 54 101-162 296-367 (398)
128 cd03801 GT1_YqgM_like This fam 45.8 64 0.0014 25.9 5.8 53 101-161 269-339 (374)
129 cd03807 GT1_WbnK_like This fam 45.3 65 0.0014 26.2 5.8 53 103-162 264-331 (365)
130 cd03795 GT1_like_4 This family 45.1 1.1E+02 0.0024 25.3 7.3 57 98-162 254-331 (357)
131 cd03799 GT1_amsK_like This is 45.1 98 0.0021 25.6 6.9 59 98-162 246-326 (355)
132 PRK06756 flavodoxin; Provision 45.1 53 0.0011 24.9 4.9 34 11-47 1-34 (148)
133 CHL00175 minD septum-site dete 44.8 54 0.0012 27.6 5.4 43 3-47 6-48 (281)
134 PRK07313 phosphopantothenoylcy 44.5 25 0.00054 28.6 3.1 39 104-142 74-118 (182)
135 cd02191 FtsZ FtsZ is a GTPase 44.4 2.2E+02 0.0047 24.9 10.6 87 22-116 60-155 (303)
136 TIGR01753 flav_short flavodoxi 43.9 59 0.0013 23.9 4.9 13 60-72 103-115 (140)
137 TIGR03449 mycothiol_MshA UDP-N 43.7 1E+02 0.0022 26.8 7.1 57 98-162 293-367 (405)
138 PF13500 AAA_26: AAA domain; P 43.7 56 0.0012 25.9 5.1 66 107-176 129-194 (199)
139 TIGR02467 CbiE precorrin-6y C5 43.4 1.7E+02 0.0037 23.5 10.9 123 30-155 55-193 (204)
140 PF09152 DUF1937: Domain of un 42.8 36 0.00078 26.2 3.6 39 98-142 70-113 (116)
141 PRK06924 short chain dehydroge 42.7 48 0.001 26.7 4.6 30 11-48 1-30 (251)
142 PRK14571 D-alanyl-alanine synt 42.6 52 0.0011 28.1 5.0 35 13-47 2-36 (299)
143 PRK05867 short chain dehydroge 42.6 1.4E+02 0.003 24.1 7.4 33 12-52 10-42 (253)
144 PRK01966 ddl D-alanyl-alanine 42.5 47 0.001 29.1 4.7 36 12-47 4-39 (333)
145 PF13380 CoA_binding_2: CoA bi 42.3 42 0.00091 25.0 3.9 31 12-47 1-31 (116)
146 smart00046 DAGKc Diacylglycero 42.2 61 0.0013 24.2 4.8 32 45-77 52-87 (124)
147 PF00106 adh_short: short chai 41.9 1.4E+02 0.0031 22.1 8.2 29 45-74 3-31 (167)
148 PF02608 Bmp: Basic membrane p 41.7 46 0.001 28.7 4.5 44 30-74 175-220 (306)
149 PRK05723 flavodoxin; Provision 41.6 47 0.001 26.0 4.2 33 12-47 1-33 (151)
150 PRK14568 vanB D-alanine--D-lac 41.6 46 0.00099 29.2 4.6 36 12-47 4-39 (343)
151 PRK06973 nicotinic acid mononu 41.4 48 0.001 28.2 4.5 36 6-41 16-51 (243)
152 PRK12422 chromosomal replicati 41.3 2.7E+02 0.0058 25.8 9.7 90 44-142 143-240 (445)
153 PRK00726 murG undecaprenyldiph 41.2 2.3E+02 0.0049 24.2 14.4 34 99-142 244-277 (357)
154 PRK02649 ppnK inorganic polyph 41.2 1.6E+02 0.0036 25.9 8.0 33 11-46 1-33 (305)
155 PLN02695 GDP-D-mannose-3',5'-e 41.1 52 0.0011 29.0 4.9 39 1-47 11-49 (370)
156 cd02201 FtsZ_type1 FtsZ is a G 41.0 1.8E+02 0.004 25.2 8.2 72 36-115 79-154 (304)
157 TIGR00421 ubiX_pad polyprenyl 41.0 27 0.00058 28.4 2.8 36 107-142 75-117 (181)
158 PRK07023 short chain dehydroge 40.6 52 0.0011 26.5 4.5 30 11-48 1-30 (243)
159 COG0063 Predicted sugar kinase 40.6 2.5E+02 0.0055 24.6 11.6 113 42-158 32-168 (284)
160 PRK02645 ppnK inorganic polyph 40.4 1.7E+02 0.0037 25.6 8.0 60 10-73 2-87 (305)
161 cd03825 GT1_wcfI_like This fam 40.0 1.4E+02 0.003 24.8 7.1 55 100-162 257-329 (365)
162 TIGR02153 gatD_arch glutamyl-t 40.0 72 0.0016 29.4 5.7 33 108-142 140-172 (404)
163 COG0163 UbiX 3-polyprenyl-4-hy 39.9 31 0.00066 28.8 2.9 52 108-159 81-170 (191)
164 PRK06703 flavodoxin; Provision 39.8 64 0.0014 24.6 4.7 14 59-72 105-118 (151)
165 cd05844 GT1_like_7 Glycosyltra 39.8 1.5E+02 0.0033 24.9 7.4 55 101-162 258-335 (367)
166 TIGR01127 ilvA_1Cterm threonin 39.8 96 0.0021 27.6 6.4 36 97-133 294-331 (380)
167 PRK07890 short chain dehydroge 39.4 1.4E+02 0.0031 23.9 6.9 33 12-52 6-38 (258)
168 COG0716 FldA Flavodoxins [Ener 39.4 43 0.00094 25.8 3.7 43 11-57 1-43 (151)
169 PRK08887 nicotinic acid mononu 39.3 40 0.00088 27.0 3.6 24 11-34 1-24 (174)
170 PF03975 CheD: CheD chemotacti 39.3 82 0.0018 23.5 5.0 49 4-52 32-89 (114)
171 PRK01372 ddl D-alanine--D-alan 39.2 51 0.0011 27.9 4.4 37 12-48 5-41 (304)
172 PRK06935 2-deoxy-D-gluconate 3 39.1 2E+02 0.0043 23.3 7.8 32 12-51 16-47 (258)
173 PF12831 FAD_oxidored: FAD dep 39.1 21 0.00046 32.3 2.1 28 45-74 2-29 (428)
174 PRK10669 putative cation:proto 39.1 1.8E+02 0.0039 27.4 8.3 73 42-118 417-492 (558)
175 cd03814 GT1_like_2 This family 38.4 88 0.0019 25.7 5.6 54 101-162 260-331 (364)
176 PRK15484 lipopolysaccharide 1, 37.7 1.5E+02 0.0033 26.0 7.3 56 99-162 268-343 (380)
177 cd03823 GT1_ExpE7_like This fa 37.6 1.6E+02 0.0036 23.9 7.1 56 99-162 254-328 (359)
178 TIGR00147 lipid kinase, YegS/R 37.6 59 0.0013 27.6 4.5 49 107-160 57-117 (293)
179 PRK06703 flavodoxin; Provision 37.6 66 0.0014 24.5 4.4 34 11-47 1-34 (151)
180 TIGR00236 wecB UDP-N-acetylglu 37.4 1.7E+02 0.0036 25.3 7.4 60 91-161 257-332 (365)
181 PRK08177 short chain dehydroge 37.3 62 0.0014 25.8 4.4 32 11-50 1-32 (225)
182 PRK07109 short chain dehydroge 37.3 1.7E+02 0.0037 25.4 7.5 55 11-73 8-62 (334)
183 PF00308 Bac_DnaA: Bacterial d 37.2 2.2E+02 0.0049 23.3 7.8 104 30-142 17-135 (219)
184 PLN02496 probable phosphopanto 37.1 40 0.00086 28.4 3.3 39 104-142 93-137 (209)
185 PRK06455 riboflavin synthase; 37.0 1.4E+02 0.0031 24.0 6.3 54 106-159 55-116 (155)
186 TIGR01752 flav_long flavodoxin 36.8 92 0.002 24.4 5.2 21 56-76 100-120 (167)
187 cd03818 GT1_ExpC_like This fam 36.6 1.5E+02 0.0032 25.9 7.0 56 99-162 292-365 (396)
188 PF04722 Ssu72: Ssu72-like pro 36.6 78 0.0017 26.5 4.9 34 12-52 2-36 (195)
189 PRK06029 3-octaprenyl-4-hydrox 36.5 36 0.00077 27.9 2.9 36 107-142 78-120 (185)
190 PRK06756 flavodoxin; Provision 36.3 90 0.002 23.6 5.0 14 59-72 106-119 (148)
191 PRK09330 cell division protein 36.3 1.8E+02 0.0039 26.6 7.7 70 38-115 94-167 (384)
192 PF00106 adh_short: short chai 36.1 69 0.0015 23.9 4.3 101 12-131 1-111 (167)
193 TIGR01205 D_ala_D_alaTIGR D-al 35.8 49 0.0011 28.1 3.8 38 14-51 2-39 (315)
194 PRK09496 trkA potassium transp 35.7 1.5E+02 0.0033 26.4 7.1 90 27-118 216-308 (453)
195 PF00710 Asparaginase: Asparag 35.7 78 0.0017 27.7 5.1 35 106-142 71-105 (313)
196 PRK00625 shikimate kinase; Pro 35.7 1.3E+02 0.0028 24.0 6.0 78 34-114 65-149 (173)
197 cd03819 GT1_WavL_like This fam 35.5 1.3E+02 0.0028 25.0 6.3 52 101-160 257-327 (355)
198 PRK04183 glutamyl-tRNA(Gln) am 35.4 98 0.0021 28.6 5.8 32 108-142 153-184 (419)
199 PRK03372 ppnK inorganic polyph 35.3 2.5E+02 0.0054 24.8 8.2 35 8-45 2-36 (306)
200 cd06353 PBP1_BmpA_Med_like Per 35.1 1.1E+02 0.0024 25.7 5.7 42 30-74 166-207 (258)
201 PRK07454 short chain dehydroge 35.1 83 0.0018 25.2 4.8 35 10-52 5-39 (241)
202 PRK09461 ansA cytoplasmic aspa 35.0 99 0.0021 27.5 5.7 35 106-142 80-114 (335)
203 PRK12743 oxidoreductase; Provi 34.7 2.5E+02 0.0054 22.7 9.6 29 12-48 3-31 (256)
204 COG2515 Acd 1-aminocyclopropan 34.7 1.2E+02 0.0026 27.3 6.0 51 106-160 179-229 (323)
205 PF12146 Hydrolase_4: Putative 34.5 1.4E+02 0.003 20.7 5.3 34 11-48 15-48 (79)
206 cd07225 Pat_PNPLA6_PNPLA7 Pata 34.4 40 0.00086 29.6 3.0 32 32-65 4-35 (306)
207 COG2085 Predicted dinucleotide 34.4 93 0.002 26.3 5.1 33 11-52 1-33 (211)
208 cd03821 GT1_Bme6_like This fam 34.3 1.7E+02 0.0036 23.8 6.6 55 100-162 274-344 (375)
209 TIGR00642 mmCoA_mut_beta methy 34.3 70 0.0015 31.1 4.9 42 12-58 547-589 (619)
210 PRK08267 short chain dehydroge 34.2 73 0.0016 25.9 4.4 30 11-48 1-30 (260)
211 PRK08569 rpl18p 50S ribosomal 34.1 1E+02 0.0022 25.7 5.2 40 29-68 79-128 (193)
212 PLN02586 probable cinnamyl alc 33.6 1.7E+02 0.0037 25.5 6.9 83 43-128 185-268 (360)
213 PRK09271 flavodoxin; Provision 33.5 82 0.0018 24.5 4.4 32 12-46 1-32 (160)
214 COG1063 Tdh Threonine dehydrog 33.5 1.3E+02 0.0029 26.4 6.2 83 43-128 170-259 (350)
215 PRK06194 hypothetical protein; 33.4 2.1E+02 0.0046 23.5 7.2 32 12-51 7-38 (287)
216 PRK14557 pyrH uridylate kinase 33.3 69 0.0015 27.3 4.2 44 9-52 2-54 (247)
217 PRK06182 short chain dehydroge 33.0 2.7E+02 0.0059 22.7 8.9 11 107-117 74-84 (273)
218 PF03358 FMN_red: NADPH-depend 33.0 89 0.0019 23.5 4.4 34 11-46 1-34 (152)
219 COG0240 GpsA Glycerol-3-phosph 32.8 3.7E+02 0.0081 24.2 11.2 43 11-62 1-43 (329)
220 cd07227 Pat_Fungal_NTE1 Fungal 32.7 33 0.00071 29.7 2.2 30 34-65 1-30 (269)
221 TIGR02690 resist_ArsH arsenica 32.5 1.1E+02 0.0023 25.8 5.2 38 8-46 23-60 (219)
222 PRK08105 flavodoxin; Provision 32.4 1E+02 0.0022 23.9 4.8 27 47-73 89-121 (149)
223 PRK07334 threonine dehydratase 32.2 3.8E+02 0.0082 24.1 10.6 53 108-161 296-348 (403)
224 PF04127 DFP: DNA / pantothena 32.1 1.2E+02 0.0025 24.8 5.2 64 45-113 21-88 (185)
225 PRK03708 ppnK inorganic polyph 32.1 69 0.0015 27.7 4.1 107 12-165 1-114 (277)
226 PF13614 AAA_31: AAA domain; P 32.1 1E+02 0.0023 22.9 4.7 34 12-48 1-34 (157)
227 COG2242 CobL Precorrin-6B meth 32.0 1.1E+02 0.0023 25.4 5.0 120 31-160 23-151 (187)
228 PRK12361 hypothetical protein; 31.9 71 0.0015 30.0 4.4 44 111-159 300-358 (547)
229 PRK14077 pnk inorganic polypho 31.8 2.4E+02 0.0053 24.6 7.5 61 7-73 6-94 (287)
230 COG3967 DltE Short-chain dehyd 31.6 58 0.0013 28.0 3.4 26 45-71 8-33 (245)
231 PRK08979 acetolactate synthase 31.5 3E+02 0.0064 26.0 8.5 82 30-119 194-284 (572)
232 PRK08277 D-mannonate oxidoredu 31.5 2.2E+02 0.0049 23.3 7.0 33 12-52 11-43 (278)
233 KOG1431 GDP-L-fucose synthetas 31.5 3.1E+02 0.0068 24.1 7.9 110 63-181 151-273 (315)
234 PRK09004 FMN-binding protein M 31.3 1.3E+02 0.0029 23.2 5.2 8 65-72 111-118 (146)
235 PRK08085 gluconate 5-dehydroge 31.3 2.8E+02 0.006 22.3 7.4 34 11-52 9-42 (254)
236 PRK06947 glucose-1-dehydrogena 31.1 86 0.0019 25.1 4.3 31 11-49 2-32 (248)
237 PRK05993 short chain dehydroge 30.9 99 0.0021 25.6 4.8 32 8-47 1-32 (277)
238 PRK12824 acetoacetyl-CoA reduc 30.9 1E+02 0.0022 24.5 4.7 33 12-52 3-35 (245)
239 PRK13946 shikimate kinase; Pro 30.7 2.7E+02 0.0058 21.9 8.1 34 39-73 76-109 (184)
240 COG0112 GlyA Glycine/serine hy 30.0 50 0.0011 30.6 2.9 39 30-68 291-339 (413)
241 KOG3614 Ca2+/Mg2+-permeable ca 30.0 1.8E+02 0.0039 31.1 7.1 56 12-67 119-176 (1381)
242 PRK08226 short chain dehydroge 30.0 2.7E+02 0.0059 22.4 7.2 53 12-73 7-59 (263)
243 PRK12937 short chain dehydroge 30.0 1E+02 0.0022 24.6 4.5 32 11-50 5-36 (245)
244 cd03816 GT1_ALG1_like This fam 29.9 2.6E+02 0.0056 24.9 7.6 58 98-162 305-380 (415)
245 PF03205 MobB: Molybdopterin g 29.8 75 0.0016 24.4 3.6 32 12-47 1-32 (140)
246 PRK04885 ppnK inorganic polyph 29.8 3.3E+02 0.0071 23.5 7.9 56 12-73 1-67 (265)
247 KOG1201 Hydroxysteroid 17-beta 29.7 63 0.0014 28.8 3.4 28 42-70 38-65 (300)
248 cd03132 GATase1_catalase Type 29.5 1.4E+02 0.0031 22.2 5.0 33 109-142 64-100 (142)
249 TIGR03087 stp1 sugar transfera 29.4 1.7E+02 0.0037 25.6 6.2 53 104-162 294-361 (397)
250 COG0493 GltD NADPH-dependent g 29.3 3.9E+02 0.0084 25.0 8.8 50 12-82 124-174 (457)
251 TIGR02991 ectoine_eutB ectoine 29.2 99 0.0022 27.0 4.6 45 31-76 157-203 (317)
252 cd03811 GT1_WabH_like This fam 29.2 2E+02 0.0043 23.0 6.1 50 104-161 260-330 (353)
253 PRK05693 short chain dehydroge 29.1 93 0.002 25.6 4.3 32 11-50 1-32 (274)
254 PLN02271 serine hydroxymethylt 29.1 55 0.0012 31.8 3.2 40 30-69 442-491 (586)
255 PRK07097 gluconate 5-dehydroge 29.1 3.1E+02 0.0068 22.2 7.7 33 12-52 11-43 (265)
256 PF10727 Rossmann-like: Rossma 28.9 81 0.0018 24.2 3.6 29 10-47 9-37 (127)
257 PLN02275 transferase, transfer 28.9 3E+02 0.0064 24.0 7.6 39 98-142 297-338 (371)
258 PF00258 Flavodoxin_1: Flavodo 28.8 66 0.0014 23.9 3.1 38 10-48 86-123 (143)
259 PRK09922 UDP-D-galactose:(gluc 28.8 2.9E+02 0.0062 23.7 7.5 59 99-163 249-324 (359)
260 cd02071 MM_CoA_mut_B12_BD meth 28.7 2.4E+02 0.0052 20.8 10.5 111 26-159 10-122 (122)
261 PRK06180 short chain dehydroge 28.6 84 0.0018 26.0 3.9 34 11-52 4-37 (277)
262 PRK12938 acetyacetyl-CoA reduc 28.6 1.2E+02 0.0027 24.2 4.8 33 12-52 4-36 (246)
263 COG0252 AnsB L-asparaginase/ar 28.5 95 0.0021 28.1 4.5 31 109-142 102-132 (351)
264 PRK14075 pnk inorganic polypho 28.5 2.3E+02 0.0049 24.2 6.6 53 12-74 1-69 (256)
265 PRK06179 short chain dehydroge 28.4 1.2E+02 0.0026 24.8 4.8 32 8-47 1-32 (270)
266 cd03809 GT1_mtfB_like This fam 28.4 61 0.0013 26.7 3.0 53 101-161 266-334 (365)
267 PRK07102 short chain dehydroge 28.4 84 0.0018 25.2 3.8 32 11-50 1-32 (243)
268 cd03805 GT1_ALG2_like This fam 28.4 3.5E+02 0.0076 23.0 7.9 54 101-162 293-363 (392)
269 PRK06953 short chain dehydroge 28.3 1.1E+02 0.0024 24.3 4.5 31 11-49 1-31 (222)
270 PF00995 Sec1: Sec1 family; I 28.3 1E+02 0.0022 28.5 4.8 49 108-157 516-564 (564)
271 cd04261 AAK_AKii-LysC-BS AAK_A 28.3 1.3E+02 0.0027 25.0 4.9 35 17-52 6-42 (239)
272 PRK07677 short chain dehydroge 28.3 92 0.002 25.2 4.1 31 12-50 2-32 (252)
273 PF03486 HI0933_like: HI0933-l 28.2 39 0.00084 30.9 2.0 17 45-61 3-19 (409)
274 PF01202 SKI: Shikimate kinase 28.2 1.1E+02 0.0024 23.5 4.3 81 35-117 55-144 (158)
275 PRK08340 glucose-1-dehydrogena 28.1 1E+02 0.0022 25.1 4.3 28 12-47 1-28 (259)
276 TIGR02822 adh_fam_2 zinc-bindi 28.0 1E+02 0.0022 26.6 4.4 31 43-75 167-197 (329)
277 PRK06139 short chain dehydroge 27.9 2.7E+02 0.0058 24.2 7.2 54 12-73 8-61 (330)
278 PRK07478 short chain dehydroge 27.8 3.2E+02 0.007 21.9 7.4 59 7-73 2-60 (254)
279 PF13524 Glyco_trans_1_2: Glyc 27.7 1.1E+02 0.0025 20.8 3.9 18 146-163 45-62 (92)
280 TIGR00715 precor6x_red precorr 27.7 93 0.002 26.7 4.1 49 107-161 197-255 (256)
281 PLN02740 Alcohol dehydrogenase 27.5 2.2E+02 0.0048 24.9 6.6 83 43-128 200-289 (381)
282 cd04882 ACT_Bt0572_2 C-termina 27.4 1.6E+02 0.0035 18.3 5.5 50 111-160 3-60 (65)
283 COG1763 MobB Molybdopterin-gua 27.4 1.3E+02 0.0029 24.1 4.7 33 11-47 2-34 (161)
284 PRK08589 short chain dehydroge 27.3 3.3E+02 0.0072 22.4 7.4 53 12-73 7-59 (272)
285 PRK05876 short chain dehydroge 27.3 2.8E+02 0.006 23.1 6.9 33 12-52 7-39 (275)
286 PRK13498 chemoreceptor glutami 27.2 1.2E+02 0.0025 24.6 4.3 45 4-48 81-133 (167)
287 PRK09134 short chain dehydroge 27.1 1.2E+02 0.0027 24.5 4.6 35 8-50 6-40 (258)
288 PF04309 G3P_antiterm: Glycero 27.1 1E+02 0.0022 25.2 4.1 51 107-162 19-72 (175)
289 PF07293 DUF1450: Protein of u 27.1 1E+02 0.0022 22.0 3.5 25 137-161 45-72 (78)
290 PRK10886 DnaA initiator-associ 27.0 3.5E+02 0.0077 22.1 8.0 31 26-56 25-55 (196)
291 PF08442 ATP-grasp_2: ATP-gras 27.0 1.3E+02 0.0028 25.0 4.7 43 118-164 24-79 (202)
292 PRK03708 ppnK inorganic polyph 26.9 3.6E+02 0.0078 23.3 7.7 28 43-73 59-86 (277)
293 PRK09267 flavodoxin FldA; Vali 26.8 1E+02 0.0022 23.9 3.9 27 11-40 1-27 (169)
294 PRK09072 short chain dehydroge 26.7 1.2E+02 0.0027 24.6 4.6 31 12-50 6-36 (263)
295 TIGR01832 kduD 2-deoxy-D-gluco 26.5 1E+02 0.0022 24.7 4.0 32 12-51 6-37 (248)
296 PLN02958 diacylglycerol kinase 26.5 1E+02 0.0022 28.8 4.4 51 108-159 169-236 (481)
297 PRK07523 gluconate 5-dehydroge 26.4 3.4E+02 0.0074 21.8 9.0 104 12-134 11-121 (255)
298 PRK05693 short chain dehydroge 26.4 3.5E+02 0.0075 22.1 7.3 30 44-74 3-32 (274)
299 PRK03501 ppnK inorganic polyph 26.3 3.8E+02 0.0083 23.1 7.7 59 11-74 2-71 (264)
300 PLN02970 serine racemase 26.3 1.4E+02 0.0031 26.1 5.2 47 30-77 164-212 (328)
301 TIGR01915 npdG NADPH-dependent 26.3 1.3E+02 0.0028 24.5 4.6 32 12-51 1-32 (219)
302 KOG2467 Glycine/serine hydroxy 26.2 69 0.0015 29.8 3.1 37 30-66 328-374 (477)
303 PF12965 DUF3854: Domain of un 26.0 3E+02 0.0066 21.1 6.6 49 12-61 69-124 (130)
304 PRK06124 gluconate 5-dehydroge 25.7 3.5E+02 0.0076 21.7 7.3 34 11-52 11-44 (256)
305 PRK14106 murD UDP-N-acetylmura 25.7 2.7E+02 0.0058 25.0 6.9 14 105-118 66-79 (450)
306 PF07131 DUF1382: Protein of u 25.7 1.2E+02 0.0026 20.8 3.4 24 25-48 5-28 (61)
307 PRK13937 phosphoheptose isomer 25.7 1.8E+02 0.0038 23.3 5.2 32 25-56 21-52 (188)
308 PRK06180 short chain dehydroge 25.6 1.5E+02 0.0032 24.5 4.9 31 43-74 5-35 (277)
309 PRK05593 rplR 50S ribosomal pr 25.6 2.2E+02 0.0048 21.6 5.4 39 29-67 68-114 (117)
310 PRK12827 short chain dehydroge 25.5 1.2E+02 0.0026 24.0 4.2 28 12-47 7-34 (249)
311 PRK06483 dihydromonapterin red 25.5 1.4E+02 0.003 23.8 4.6 30 10-47 1-30 (236)
312 PRK12826 3-ketoacyl-(acyl-carr 25.5 1.4E+02 0.0031 23.6 4.7 34 7-48 2-35 (251)
313 PRK06849 hypothetical protein; 25.5 1.1E+02 0.0025 27.0 4.4 35 10-52 3-37 (389)
314 PRK13609 diacylglycerol glucos 25.4 1.4E+02 0.003 25.9 4.9 33 10-45 3-35 (380)
315 PRK05854 short chain dehydroge 25.4 1E+02 0.0023 26.3 4.0 33 12-52 15-47 (313)
316 TIGR03088 stp2 sugar transfera 25.3 4.2E+02 0.0092 22.5 14.0 52 103-162 268-337 (374)
317 TIGR02113 coaC_strep phosphopa 25.2 91 0.002 25.2 3.4 54 106-159 75-140 (177)
318 TIGR02699 archaeo_AfpA archaeo 25.2 91 0.002 25.3 3.4 36 107-142 78-120 (174)
319 PRK05568 flavodoxin; Provision 25.2 1.9E+02 0.0041 21.4 5.0 34 11-47 1-34 (142)
320 PRK13146 hisH imidazole glycer 25.1 2E+02 0.0044 23.4 5.6 14 102-115 147-160 (209)
321 TIGR01754 flav_RNR ribonucleot 25.1 1.3E+02 0.0029 22.6 4.2 31 13-46 2-32 (140)
322 PRK07577 short chain dehydroge 25.1 1.4E+02 0.003 23.6 4.5 29 12-48 4-32 (234)
323 CHL00200 trpA tryptophan synth 25.0 3.9E+02 0.0084 23.0 7.4 59 95-155 154-219 (263)
324 PRK05565 fabG 3-ketoacyl-(acyl 24.9 3.5E+02 0.0075 21.3 8.3 31 11-49 5-35 (247)
325 PRK09291 short chain dehydroge 24.8 1.1E+02 0.0024 24.5 4.0 32 12-51 3-34 (257)
326 PRK06101 short chain dehydroge 24.7 1.3E+02 0.0028 24.2 4.3 34 11-52 1-34 (240)
327 PRK08642 fabG 3-ketoacyl-(acyl 24.7 1.5E+02 0.0032 23.7 4.6 30 12-49 6-35 (253)
328 PF02729 OTCace_N: Aspartate/o 24.7 1.8E+02 0.004 22.5 5.0 76 60-154 58-133 (142)
329 TIGR01369 CPSaseII_lrg carbamo 24.6 7.9E+02 0.017 25.4 11.1 12 10-21 5-16 (1050)
330 PRK09730 putative NAD(P)-bindi 24.6 1.3E+02 0.0028 23.9 4.3 30 11-48 1-30 (247)
331 PRK09186 flagellin modificatio 24.6 1.4E+02 0.0031 23.9 4.5 29 12-48 5-33 (256)
332 PRK06079 enoyl-(acyl carrier p 24.6 1.3E+02 0.0029 24.5 4.4 29 12-47 8-37 (252)
333 PRK05557 fabG 3-ketoacyl-(acyl 24.6 1.8E+02 0.0039 22.8 5.1 33 12-52 6-38 (248)
334 PRK07102 short chain dehydroge 24.5 3.6E+02 0.0079 21.4 11.4 30 44-74 3-32 (243)
335 PLN02896 cinnamyl-alcohol dehy 24.5 1.3E+02 0.0029 25.9 4.6 32 9-48 8-39 (353)
336 cd01356 AcnX_swivel Putative A 24.5 1.3E+02 0.0029 23.2 4.0 36 107-142 42-77 (123)
337 TIGR02076 pyrH_arch uridylate 24.4 97 0.0021 25.4 3.5 36 17-52 5-43 (221)
338 PRK06197 short chain dehydroge 24.4 1.4E+02 0.003 25.1 4.6 36 8-51 13-48 (306)
339 cd03802 GT1_AviGT4_like This f 24.3 4E+02 0.0086 21.8 7.4 54 98-160 234-305 (335)
340 PF03721 UDPG_MGDP_dh_N: UDP-g 24.3 97 0.0021 25.0 3.4 11 105-115 74-84 (185)
341 PRK13493 chemoreceptor glutami 24.2 1.5E+02 0.0033 25.0 4.6 45 4-48 111-157 (213)
342 PRK11780 isoprenoid biosynthes 24.1 70 0.0015 26.7 2.6 40 11-50 1-40 (217)
343 PRK12825 fabG 3-ketoacyl-(acyl 24.1 1.6E+02 0.0034 23.1 4.7 30 11-48 6-35 (249)
344 PF06289 FlbD: Flagellar prote 24.0 1.1E+02 0.0025 20.7 3.2 20 143-162 37-56 (60)
345 PRK07832 short chain dehydroge 24.0 2.5E+02 0.0054 23.0 6.0 63 12-82 1-63 (272)
346 COG5008 PilU Tfp pilus assembl 24.0 5.4E+02 0.012 23.3 8.4 118 38-166 123-253 (375)
347 PRK07035 short chain dehydroge 24.0 3.8E+02 0.0082 21.4 7.3 32 12-51 9-40 (252)
348 PRK13669 hypothetical protein; 24.0 1.2E+02 0.0027 21.6 3.5 26 136-161 44-72 (78)
349 PRK12748 3-ketoacyl-(acyl-carr 23.9 1.4E+02 0.0031 24.1 4.5 33 12-50 6-38 (256)
350 PRK07476 eutB threonine dehydr 23.9 1.3E+02 0.0028 26.2 4.4 48 28-76 154-203 (322)
351 cd04246 AAK_AK-DapG-like AAK_A 23.9 1.7E+02 0.0037 24.2 5.0 35 17-52 6-42 (239)
352 PRK07035 short chain dehydroge 23.9 1.2E+02 0.0025 24.5 3.9 32 42-74 8-39 (252)
353 PRK12829 short chain dehydroge 23.9 1.6E+02 0.0034 23.7 4.7 28 12-47 12-39 (264)
354 PF00890 FAD_binding_2: FAD bi 23.8 68 0.0015 28.3 2.7 28 45-74 2-29 (417)
355 cd02040 NifH NifH gene encodes 23.7 1.7E+02 0.0037 24.0 5.0 33 11-47 1-33 (270)
356 PRK07308 flavodoxin; Validated 23.5 1.6E+02 0.0035 22.2 4.4 33 12-47 2-34 (146)
357 PRK06443 chorismate mutase; Va 23.5 1.9E+02 0.0041 23.9 4.9 41 27-71 91-131 (177)
358 PRK05717 oxidoreductase; Valid 23.5 1.7E+02 0.0036 23.7 4.8 36 5-48 4-39 (255)
359 PRK05723 flavodoxin; Provision 23.3 1.7E+02 0.0036 22.9 4.5 36 12-47 85-120 (151)
360 PRK06138 short chain dehydroge 23.3 1.6E+02 0.0034 23.5 4.5 33 7-47 1-33 (252)
361 PF00696 AA_kinase: Amino acid 23.2 35 0.00076 27.8 0.7 42 11-52 1-44 (242)
362 PRK06130 3-hydroxybutyryl-CoA 23.2 1.2E+02 0.0026 25.9 4.0 31 8-47 1-31 (311)
363 TIGR03366 HpnZ_proposed putati 23.1 2.4E+02 0.0053 23.4 5.8 84 43-129 122-209 (280)
364 PRK07024 short chain dehydroge 23.1 1.8E+02 0.0038 23.6 4.9 33 12-52 3-35 (257)
365 PRK08217 fabG 3-ketoacyl-(acyl 23.0 1.3E+02 0.0028 24.0 3.9 31 12-50 6-36 (253)
366 PF01202 SKI: Shikimate kinase 23.0 97 0.0021 23.8 3.1 45 109-162 63-107 (158)
367 PF03446 NAD_binding_2: NAD bi 23.0 1.6E+02 0.0035 22.7 4.4 44 11-67 1-44 (163)
368 PRK08643 acetoin reductase; Va 22.9 4E+02 0.0087 21.3 7.2 54 12-73 3-56 (256)
369 PF00464 SHMT: Serine hydroxym 22.9 53 0.0012 30.2 1.8 43 30-72 307-359 (399)
370 COG0148 Eno Enolase [Carbohydr 22.9 1.4E+02 0.0029 27.9 4.4 44 98-142 318-361 (423)
371 PRK03910 D-cysteine desulfhydr 22.9 2.3E+02 0.0049 24.7 5.7 58 18-76 156-219 (331)
372 PRK09355 hydroxyethylthiazole 22.8 80 0.0017 26.8 2.8 36 104-142 51-89 (263)
373 PRK15427 colanic acid biosynth 22.8 3.8E+02 0.0082 23.9 7.3 56 101-162 292-369 (406)
374 cd01561 CBS_like CBS_like: Thi 22.8 1.8E+02 0.0038 24.8 4.9 47 30-77 148-197 (291)
375 KOG1209 1-Acyl dihydroxyaceton 22.8 1.5E+02 0.0032 25.9 4.3 45 9-60 5-49 (289)
376 TIGR01139 cysK cysteine syntha 22.8 1.9E+02 0.0042 24.7 5.2 47 29-76 150-199 (298)
377 PRK13497 chemoreceptor glutami 22.7 1.6E+02 0.0034 24.3 4.4 45 4-48 84-130 (184)
378 cd04949 GT1_gtfA_like This fam 22.6 2.1E+02 0.0045 24.4 5.4 52 104-163 275-345 (372)
379 PRK11096 ansB L-asparaginase I 22.6 1.1E+02 0.0025 27.4 3.8 34 106-142 99-132 (347)
380 PRK08063 enoyl-(acyl carrier p 22.5 4E+02 0.0086 21.1 7.6 30 12-49 5-34 (250)
381 PRK01231 ppnK inorganic polyph 22.5 1.5E+02 0.0033 25.9 4.5 50 107-162 62-117 (295)
382 KOG0832 Mitochondrial/chloropl 22.5 2.6E+02 0.0056 24.3 5.7 45 26-71 91-136 (251)
383 cd03794 GT1_wbuB_like This fam 22.5 4.2E+02 0.0092 21.4 13.7 57 99-161 286-363 (394)
384 PRK07819 3-hydroxybutyryl-CoA 22.5 1.3E+02 0.0029 25.8 4.2 137 8-160 2-173 (286)
385 TIGR01136 cysKM cysteine synth 22.5 1.6E+02 0.0035 25.2 4.7 47 29-76 150-199 (299)
386 cd06259 YdcF-like YdcF-like. Y 22.5 1.6E+02 0.0034 22.1 4.2 10 110-119 36-45 (150)
387 PRK06739 pyruvate kinase; Vali 22.5 3.8E+02 0.0082 24.3 7.1 42 101-142 223-269 (352)
388 cd04893 ACT_GcvR_1 ACT domains 22.4 1.9E+02 0.0042 19.6 4.2 22 52-73 11-32 (77)
389 PLN02583 cinnamoyl-CoA reducta 22.4 1.5E+02 0.0033 25.0 4.5 32 8-47 3-34 (297)
390 PF04016 DUF364: Domain of unk 22.2 2.1E+02 0.0045 22.3 4.9 56 98-159 53-130 (147)
391 PRK10537 voltage-gated potassi 22.2 6E+02 0.013 23.1 11.5 105 42-159 240-347 (393)
392 PRK14086 dnaA chromosomal repl 22.2 7.5E+02 0.016 24.3 10.0 104 30-142 301-415 (617)
393 PRK05653 fabG 3-ketoacyl-(acyl 22.1 3.9E+02 0.0084 20.9 7.7 30 12-49 6-35 (246)
394 cd02115 AAK Amino Acid Kinases 22.1 1.7E+02 0.0038 23.7 4.6 39 16-55 3-42 (248)
395 TIGR00436 era GTP-binding prot 22.1 3.8E+02 0.0083 22.4 6.8 17 148-164 150-166 (270)
396 PRK08339 short chain dehydroge 22.0 1.4E+02 0.003 24.6 4.1 31 12-50 9-39 (263)
397 PRK06841 short chain dehydroge 21.9 1.6E+02 0.0035 23.6 4.3 28 12-47 16-43 (255)
398 cd01527 RHOD_YgaP Member of th 21.9 2.6E+02 0.0056 19.2 4.9 26 11-44 54-79 (99)
399 cd01523 RHOD_Lact_B Member of 21.8 2.4E+02 0.0052 19.5 4.7 26 12-45 62-87 (100)
400 COG1582 FlgEa Uncharacterized 21.8 83 0.0018 21.8 2.2 23 143-165 37-59 (67)
401 PRK02645 ppnK inorganic polyph 21.8 92 0.002 27.3 3.0 31 106-142 56-86 (305)
402 PF13580 SIS_2: SIS domain; PD 21.8 1.2E+02 0.0025 23.1 3.3 94 26-122 19-118 (138)
403 PRK12367 short chain dehydroge 21.7 1.3E+02 0.0029 24.8 3.9 29 12-48 15-43 (245)
404 PRK13957 indole-3-glycerol-pho 21.7 5E+02 0.011 22.3 7.4 80 60-156 164-245 (247)
405 PRK12481 2-deoxy-D-gluconate 3 21.7 4.4E+02 0.0095 21.3 7.3 52 12-73 9-60 (251)
406 cd06449 ACCD Aminocyclopropane 21.5 3.2E+02 0.007 23.4 6.4 50 26-76 155-210 (307)
407 PRK12829 short chain dehydroge 21.5 1.4E+02 0.0031 23.9 4.0 33 41-74 10-42 (264)
408 PRK12439 NAD(P)H-dependent gly 21.4 1.5E+02 0.0032 26.1 4.3 34 8-50 4-37 (341)
409 PRK13495 chemoreceptor glutami 21.4 1.8E+02 0.004 23.2 4.5 45 4-48 76-123 (159)
410 cd03817 GT1_UGDG_like This fam 21.3 4.3E+02 0.0094 21.4 6.9 36 99-142 270-307 (374)
411 PRK06381 threonine synthase; V 21.3 2E+02 0.0044 24.7 5.1 48 28-76 152-208 (319)
412 PRK07041 short chain dehydroge 21.3 1.1E+02 0.0025 24.1 3.3 17 32-48 10-26 (230)
413 PRK12314 gamma-glutamyl kinase 21.2 1.6E+02 0.0035 25.1 4.4 44 11-54 9-61 (266)
414 PF03853 YjeF_N: YjeF-related 21.2 2.6E+02 0.0057 21.9 5.3 34 10-48 24-57 (169)
415 PRK08264 short chain dehydroge 21.1 1.9E+02 0.0041 22.9 4.6 33 7-47 2-35 (238)
416 PF00365 PFK: Phosphofructokin 21.1 94 0.002 27.0 2.9 30 44-73 3-36 (282)
417 PRK06398 aldose dehydrogenase; 21.1 2.1E+02 0.0046 23.3 5.0 34 7-48 2-35 (258)
418 PRK05671 aspartate-semialdehyd 21.0 1.4E+02 0.0031 26.6 4.1 29 45-73 68-96 (336)
419 PF12641 Flavodoxin_3: Flavodo 21.0 1.9E+02 0.0041 23.0 4.5 32 12-43 68-99 (160)
420 PF07287 DUF1446: Protein of u 21.0 2.7E+02 0.0058 25.4 5.9 53 22-74 50-106 (362)
421 KOG1207 Diacetyl reductase/L-x 21.0 1.2E+02 0.0027 25.6 3.4 30 44-74 9-38 (245)
422 PF02571 CbiJ: Precorrin-6x re 21.0 1.3E+02 0.0028 25.7 3.7 28 12-48 1-28 (249)
423 PRK07201 short chain dehydroge 20.9 4.2E+02 0.0092 24.8 7.5 31 12-50 372-402 (657)
424 cd04962 GT1_like_5 This family 20.8 3.7E+02 0.0079 22.5 6.5 51 103-161 266-334 (371)
425 cd05213 NAD_bind_Glutamyl_tRNA 20.8 5.5E+02 0.012 22.2 8.1 71 43-120 179-251 (311)
426 PRK08594 enoyl-(acyl carrier p 20.8 1.9E+02 0.0042 23.7 4.7 32 12-50 8-40 (257)
427 PLN02778 3,5-epimerase/4-reduc 20.8 1.9E+02 0.004 24.7 4.7 16 6-21 4-19 (298)
428 PRK05057 aroK shikimate kinase 20.7 4.2E+02 0.009 20.7 8.3 94 32-128 63-165 (172)
429 TIGR03492 conserved hypothetic 20.7 6.2E+02 0.013 22.7 11.2 30 102-142 291-320 (396)
430 TIGR01138 cysM cysteine syntha 20.6 1.8E+02 0.004 24.9 4.6 48 28-76 149-199 (290)
431 PRK00942 acetylglutamate kinas 20.5 1.6E+02 0.0035 25.1 4.2 40 12-52 25-66 (283)
432 PRK07067 sorbitol dehydrogenas 20.5 1.8E+02 0.0039 23.4 4.4 29 12-48 7-35 (257)
433 TIGR00715 precor6x_red precorr 20.5 1.3E+02 0.0028 25.8 3.6 27 12-47 1-27 (256)
434 cd04260 AAK_AKi-DapG-BS AAK_AK 20.5 1.3E+02 0.0028 25.2 3.5 26 16-41 5-30 (244)
435 PRK07814 short chain dehydroge 20.4 1.6E+02 0.0034 24.1 4.0 33 12-52 11-43 (263)
436 PRK06463 fabG 3-ketoacyl-(acyl 20.4 1.8E+02 0.004 23.5 4.4 29 12-48 8-36 (255)
437 COG1402 Uncharacterized protei 20.3 1.9E+02 0.0041 24.9 4.6 45 24-68 84-132 (250)
438 PRK07063 short chain dehydroge 20.3 1.7E+02 0.0037 23.7 4.2 28 12-47 8-35 (260)
439 PRK09072 short chain dehydroge 20.3 1.6E+02 0.0034 24.0 4.0 31 43-74 6-36 (263)
440 PRK14045 1-aminocyclopropane-1 20.3 2.5E+02 0.0054 24.5 5.5 59 17-76 156-220 (329)
441 TIGR00065 ftsZ cell division p 20.2 6.3E+02 0.014 22.6 8.3 69 39-115 99-171 (349)
442 PLN02948 phosphoribosylaminoim 20.2 2E+02 0.0043 27.6 5.1 36 4-48 15-50 (577)
443 PF00290 Trp_syntA: Tryptophan 20.2 5.7E+02 0.012 22.0 7.7 61 95-157 150-217 (259)
444 PRK14573 bifunctional D-alanyl 20.2 1.7E+02 0.0037 28.9 4.9 37 11-47 451-487 (809)
445 PRK06182 short chain dehydroge 20.2 1.9E+02 0.0042 23.6 4.6 33 11-51 3-35 (273)
446 PRK14087 dnaA chromosomal repl 20.2 6.9E+02 0.015 23.1 8.7 105 31-142 125-244 (450)
447 cd01170 THZ_kinase 4-methyl-5- 20.1 5E+02 0.011 21.6 7.1 65 54-142 18-84 (242)
448 PTZ00075 Adenosylhomocysteinas 20.0 7.1E+02 0.015 23.6 8.6 96 46-159 258-354 (476)
No 1
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=100.00 E-value=5.8e-47 Score=308.17 Aligned_cols=149 Identities=46% Similarity=0.862 Sum_probs=140.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEV 91 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~ 91 (184)
|+|||||||+.++++.|++.|++||++||++|+.||||||..|+|+++++||+++||+|+||+|..+...+.++++++++
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~ 80 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTEL 80 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCce
Confidence 58999999999999999999999999999999999999994499999999999999999999999887778788888889
Q ss_pred eecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------------------------
Q 044681 92 KPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI----------------------------- 142 (184)
Q Consensus 92 ~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl----------------------------- 142 (184)
+++++|++||.+|++.||+||+||||+|||+|++++|+|.|+|+|+||+++
T Consensus 81 i~~~~~~~Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~ 160 (178)
T TIGR00730 81 IEVNGMHERKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLK 160 (178)
T ss_pred EEECCHHHHHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcC
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHhhhh
Q 044681 143 IMVSASNAKELVQKLEDY 160 (184)
Q Consensus 143 ~i~~~~~~~e~~~~l~~~ 160 (184)
.+.+++|++|++++|++|
T Consensus 161 ~~~~~d~~~e~~~~i~~~ 178 (178)
T TIGR00730 161 LIHVVSRPDELIEQVQNY 178 (178)
T ss_pred cEEEcCCHHHHHHHHHhC
Confidence 677888888888888764
No 2
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=269.47 Aligned_cols=155 Identities=36% Similarity=0.599 Sum_probs=138.4
Q ss_pred ccCCceEEEEcCCCCCCChH-HHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCC
Q 044681 8 KSRFKRVCVFCGSSPDYKYC-YRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGV 86 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~-~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~ 86 (184)
+..+++|||||||+.+..+. ||+.|++||+.|+++|+.|++||++ |+|||+++||.++||.|+||+|......+.++.
T Consensus 11 ~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~-GiMea~~~gA~~~gg~~vGi~p~~~~~~e~~~~ 89 (205)
T COG1611 11 FIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGP-GVMEAVARGALEAGGLVVGILPGLLHEQEPPNY 89 (205)
T ss_pred ccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCch-hhhhHHHHHHHHcCCeEEEecCCCchhhccCcc
Confidence 35589999999999876666 9999999999999999888888888 999999999999999999999988766553444
Q ss_pred CCceEeecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCC--CCCEEE----------------------
Q 044681 87 TLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVH--NKPVAI---------------------- 142 (184)
Q Consensus 87 ~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~--~kPvvl---------------------- 142 (184)
..++++.+.+|++||..|+++|||||++|||+|||+|+|++|+|.|++.+ .+|.++
T Consensus 90 ~~~~l~~~~~~~~Rk~~~~~~ada~V~~pGG~GTleEl~e~lt~~q~g~~~l~~~~~i~~~~~~~~~~~~~~d~~~i~~~ 169 (205)
T COG1611 90 EVIELITGMDFAERKRAMVRSADAFIVLPGGFGTLEELFEALTLGQTGVHALTPPPLILNGNGFWEPLLEFLDPHLIVEG 169 (205)
T ss_pred ccceeeecCCHHHHHHHHHHhCCEEEEeCCCcchHHHHHHHHHHhhCCcccCCCCcEEecchHHHHHHHHHhCHHHHHhh
Confidence 45778889999999999999999999999999999999999999999987 777755
Q ss_pred --------EEEecCCHHHHHHHhhhhcCC
Q 044681 143 --------IMVSASNAKELVQKLEDYEPS 163 (184)
Q Consensus 143 --------~i~~~~~~~e~~~~l~~~~~~ 163 (184)
.+.+.+|++++++.+.+|.++
T Consensus 170 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (205)
T COG1611 170 LISEADRELLIVVDDAEEAIDAILKYLPP 198 (205)
T ss_pred cCChhhhhheeeecCHHHHHHHHHHhccc
Confidence 677889999999999998866
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=100.00 E-value=4.7e-37 Score=245.78 Aligned_cols=119 Identities=26% Similarity=0.390 Sum_probs=104.8
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCce
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGE 90 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~ 90 (184)
|++|||||||+. ++.|++.|++||++||++|+.|||||+. |+|++++++|+++||+|+||+|..+. ..+++.+
T Consensus 1 ~~~I~V~gss~~--~~~~~~~A~~lg~~La~~g~~lv~Gg~~-GlM~a~a~ga~~~gg~viGVlp~~l~----~~~~~~~ 73 (159)
T TIGR00725 1 MVQIGVIGSSNK--SEELYEIAYRLGKELAKKGHILINGGRT-GVMEAVSKGAREAGGLVVGILPDEDF----AGNPYLT 73 (159)
T ss_pred CeEEEEEeCCCC--ChHHHHHHHHHHHHHHHCCCEEEcCCch-hHHHHHHHHHHHCCCeEEEECChhhc----cCCCCce
Confidence 679999999984 7899999999999999999999999888 99999999999999999999998653 2333444
Q ss_pred Eee-cCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 91 VKP-VDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 91 ~~~-~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
..+ +..+++||++|++.|||||++|||+|||+|++++|++ +|||++
T Consensus 74 ~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~------~kpv~~ 120 (159)
T TIGR00725 74 IKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYAL------GGPVVV 120 (159)
T ss_pred EEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHc------CCCEEE
Confidence 444 4555889999999999999999999999999999984 899976
No 4
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=99.97 E-value=1.4e-30 Score=202.37 Aligned_cols=87 Identities=43% Similarity=0.687 Sum_probs=81.9
Q ss_pred hHHHHHHHHhcCCeEEEEecCcccc-ccccCCCCceEeecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhC
Q 044681 56 MGLISEEVHRGRRHVLGIIPRALMK-KELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLG 134 (184)
Q Consensus 56 M~a~a~ga~~~GG~viGviP~~~~~-~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg 134 (184)
|+|+++||+++||+|+||+|+.+.+ .+.+++.+++++.+.+|++||.+|+++||+||++|||+|||+|+|++|+|.|+|
T Consensus 1 M~a~~~ga~~~gG~viGi~p~~~~~~~~~~~~~~~~~~~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~ 80 (133)
T PF03641_consen 1 MGAVAKGAKEAGGRVIGIIPEFLFPFEEPPNPYVTELIIVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLG 80 (133)
T ss_dssp HHHHHHHHHHTTTTEEEEEETTGTTTTTTCCTTSSEEEEESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHcCCeEEEEecCccccccccCCcccCceeEeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999988 667788888999999999999999999999999999999999999999999999
Q ss_pred CCCC-CEEE
Q 044681 135 VHNK-PVAI 142 (184)
Q Consensus 135 ~~~k-Pvvl 142 (184)
.++| |+++
T Consensus 81 ~~~~~Piil 89 (133)
T PF03641_consen 81 RHNKVPIIL 89 (133)
T ss_dssp SSTS-EEEE
T ss_pred cccCCCEEE
Confidence 8877 9998
No 5
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=99.57 E-value=1.2e-13 Score=115.94 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=97.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccc---ccc------
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALM---KKE------ 82 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~---~~e------ 82 (184)
+.|+|.|+.++ .+.-.+.++++++.|+++|+.||+|+.. |+|.++.++|+++||.+|+|+|..+. |.+
T Consensus 45 ~~iaIvGsR~~--s~~~~~~a~~l~~~l~~~g~~IVSG~A~-GiD~~ah~~al~~~g~tIaVl~~gld~~yp~~n~~l~~ 121 (220)
T TIGR00732 45 RKVAIVGTRRP--TKYGERWTRKLAEELAKNGVTIVSGLAL-GIDGIAHKAALKVNGRTIAVLGTGLDQIYPRQNSKLAA 121 (220)
T ss_pred CeEEEEcCCCC--CHHHHHHHHHHHHHHHhCCCEEEcCchh-hHHHHHHHHHHHcCCCEEEEECCCCccCCchhhHHHHH
Confidence 68999998765 3455788999999999999999999998 99999999999999999999987652 111
Q ss_pred -ccCCC---CceE-----eecCChHHHHHHHHHhCCEEEEecCc--cccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 83 -LTGVT---LGEV-----KPVDHMHQRKAEMARYADCFIVLPGG--FGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 83 -~~~~~---~~~~-----~~~~~~~~Rk~~m~~~sDa~IvlPGG--~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
...+. +++. .....|..|++++...||++|++..+ .|||..+-.++.+ +|||..
T Consensus 122 ~i~~~gglliSe~p~~~~~~~~~f~~RNriia~ls~~vivve~~~~sGtl~ta~~A~~~------gr~v~~ 186 (220)
T TIGR00732 122 KIAENGGLLLSEYPPDTKPIKYNFPKRNRIISGLSRAVLVVEAPLKSGALITARYALEQ------GREVFA 186 (220)
T ss_pred HHHHcCCEEEEecCCCCCCCcccHHHHHHHHHHhcCEEEEEECCCCCchHHHHHHHHHh------CCcEEE
Confidence 00011 1111 11246789999999999999999987 7999999988876 789977
No 6
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.11 E-value=1.3e-09 Score=90.89 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=78.5
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccc---cccc----
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALM---KKEL---- 83 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~---~~e~---- 83 (184)
.+.|+|.|+.++ ++.-.+.++++++.|+++|+.+|+|+.. |+..++.++|+++||++|.|+|..+. |.+.
T Consensus 44 ~~~iaIvGsR~~--s~~g~~~a~~l~~~l~~~g~~vvSGlA~-GiD~~ah~~al~~~g~tIaVl~~gl~~~yP~~n~~l~ 120 (212)
T PF02481_consen 44 QPSIAIVGSRNP--SEYGLKFAKKLARELAKAGIVVVSGLAK-GIDAAAHRGALDAGGPTIAVLACGLDNIYPKENRELA 120 (212)
T ss_dssp S-EEEEE--SS----HHHHHHHHHHHHHHHHHT-EEEE---T-THHHHHHHHHTTT---EEEE-SS-TTS-SSGGGHHHH
T ss_pred CceEEEEcCCCC--CHHHHHHHHHHHHHHhhCCEEEEcCCCC-CHHHHHHHHHHHccCCEEEEECCCcccccchhhHHHH
Confidence 469999998775 4566889999999999999999999998 99999999999999999999987652 2210
Q ss_pred ---c-CCCC-------ceEeecCChHHHHHHHHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 84 ---T-GVTL-------GEVKPVDHMHQRKAEMARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 84 ---~-~~~~-------~~~~~~~~~~~Rk~~m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
. .+.+ ..-.....|..|++++...||++|++- =..||+.-+-.++.+ +|||..
T Consensus 121 ~~i~~~~glliSe~~p~~~~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~------gr~v~~ 186 (212)
T PF02481_consen 121 ERILDEGGLLISEYPPGTKPSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQ------GRPVFA 186 (212)
T ss_dssp HHHHHTT-EEEE-S-TT----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHH------T--EEE
T ss_pred HHHHhcCcEEEeCCCCCCCcccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHc------CCeEEE
Confidence 0 1110 111223567899999999999999986 467899888888876 788876
No 7
>PRK10736 hypothetical protein; Provisional
Probab=98.96 E-value=2.1e-08 Score=90.36 Aligned_cols=139 Identities=12% Similarity=0.154 Sum_probs=104.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCcc---cccc------
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRAL---MKKE------ 82 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~---~~~e------ 82 (184)
+.|+|.|+.++ ++.-.+.++.+++.|+++|+.||+|+.. |+-.++.++|+++||++|+|++..+ +|.+
T Consensus 108 ~~iaiVGsR~~--s~yg~~~~~~l~~~la~~g~~IVSGlA~-GiD~~AH~~aL~~~g~TIaVlg~Gld~~YP~~n~~L~~ 184 (374)
T PRK10736 108 PQLAVVGSRAH--SWYGERWGRLFCEELAKNGLTITSGLAR-GIDGVAHRAALQAGGKTIAVLGNGLENIYPRRHARLAE 184 (374)
T ss_pred CeEEEECCCCC--CHHHHHHHHHHHHHHHHCCCEEECcchh-hHHHHHHHHHHHcCCCEEEEECCCCCccCCHhHHHHHH
Confidence 68999998775 3444678999999999999999999998 9999999999999999999997554 2211
Q ss_pred -c-cCCC--Cce-----EeecCChHHHHHHHHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE---------
Q 044681 83 -L-TGVT--LGE-----VKPVDHMHQRKAEMARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI--------- 142 (184)
Q Consensus 83 -~-~~~~--~~~-----~~~~~~~~~Rk~~m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl--------- 142 (184)
. ..+. +++ -....+|..||+++...|+++||+- =..|||.=.-.++.+ +|+|..
T Consensus 185 ~I~~~~G~liSEyp~~~~p~~~~Fp~RNRIIagLS~~viVvEA~~kSGsliTA~~Al~~------gR~VfavPG~i~~~~ 258 (374)
T PRK10736 185 SIIEQGGALVSEFPLDTPPLAANFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALEQ------GRDVFALPGPIGNPG 258 (374)
T ss_pred HHHhcCCEEEECCCCCCCCChhhhhHhhhHHHHhCCeEEEEEeCCCCchHHHHHHHHHh------CCeEEEEcCCCCCcc
Confidence 0 0110 011 1123678999999999999999987 345777766666654 778776
Q ss_pred ----------EEEecCCHHHHHHHhhh
Q 044681 143 ----------IMVSASNAKELVQKLED 159 (184)
Q Consensus 143 ----------~i~~~~~~~e~~~~l~~ 159 (184)
.-....+++++++.+..
T Consensus 259 s~G~n~LI~~GA~lv~~~~Di~~~l~~ 285 (374)
T PRK10736 259 SEGPHWLIKQGAYLVTSPEDILENLQF 285 (374)
T ss_pred chhHHHHHHCCCEEeCCHHHHHHHhhh
Confidence 33345689999998853
No 8
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=98.67 E-value=6e-07 Score=80.37 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=92.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCcc---ccccc-----
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRAL---MKKEL----- 83 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~---~~~e~----- 83 (184)
+.++|.|+.++. ..-.+.++.+++.|+++|+++|+|+-. |+..++.+++++++|++|+|+.+.+ +|.+.
T Consensus 112 ~~vaIVGsR~~S--~~g~~~~~~~a~~L~~~g~~IvSGlA~-GID~~AH~aaL~~~G~TiaVl~~Gld~iYP~~n~~l~~ 188 (350)
T COG0758 112 PSVAIVGSRKPS--KYGLDYTRDLAEYLAQNGITIVSGLAR-GIDTEAHKAALNAGGKTIAVLATGLDKIYPRENIKLAE 188 (350)
T ss_pred CceEEEeCCCCC--HhHHHHHHHHHHHHHhCCeEEEecCcc-eecHHHHHHHHHcCCcEEEEEcCCCCccCChhhHHHHH
Confidence 689999987763 344789999999999999999999999 9999999999999999999986544 22210
Q ss_pred --cCCC-------CceEeecCChHHHHHHHHHhCCEEEEecCc--cccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 84 --TGVT-------LGEVKPVDHMHQRKAEMARYADCFIVLPGG--FGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 84 --~~~~-------~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG--~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
..+. ...-....+|..||+++...||++||+-.+ .|+|.=.-.++.+ ++.|..
T Consensus 189 ~i~~~g~liSEypp~~~p~~~~Fp~RNRiIagLS~gvlVvEA~~kSGSLiTA~~Aleq------gR~Vfa 252 (350)
T COG0758 189 KIAENGLLISEYPPDTEPNKGNFPRRNRLIAGLSDGVLVVEAGLKSGSLITAKYALEQ------GRDVFA 252 (350)
T ss_pred HHHhcCeEEeecCCCCCcccccchHHHHHHHHhcCceEEEecCcccccHHHHHHHHHc------CCeeEE
Confidence 0110 111223468899999999999999998755 5777666666654 555554
No 9
>PF12694 MoCo_carrier: Putative molybdenum carrier; InterPro: IPR024755 The structure of proteins in this family contain central beta strands with flanking alpha helices. The structure is similar to that of a molybdenum cofactor carrier protein.; PDB: 3IMK_A.
Probab=96.02 E-value=0.2 Score=39.90 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=58.0
Q ss_pred EEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccc-cCCCC-ceEeecCChHHHHHHHHHhCCEEEEecCcc---cc
Q 044681 46 LVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKEL-TGVTL-GEVKPVDHMHQRKAEMARYADCFIVLPGGF---GT 120 (184)
Q Consensus 46 lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~-~~~~~-~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~---GT 120 (184)
||+||-. |+-.|+-+.|+++|=..=|-.|......+- .+..| .......+...|.++.+.-||+-++|-=|- ||
T Consensus 1 IiSGGQT-GvDRAALDaAi~~gi~~GGWcP~GR~aEDG~ip~~Y~L~E~~~~~Y~~RT~~NV~DsDgTlI~~~g~l~GGt 79 (145)
T PF12694_consen 1 IISGGQT-GVDRAALDAAIAHGIPHGGWCPKGRRAEDGPIPARYPLQETPSSGYRQRTEWNVRDSDGTLIFTRGELTGGT 79 (145)
T ss_dssp EE----T-THHHHHHHHHHHTT--EE-EE-GGG--TTSS--TTS--EE-SS--HHHHHHHHHHTSSEEEEEESSS--HHH
T ss_pred CccCccc-cHHHHHHHHHHHcCCCccCcCCCCcccccCcCCccccceecCCCCHHHHHHhhhhhcCeEEEEecCCCCcHH
Confidence 5777755 999999999999998888888876644331 22233 223335788999999999999888776332 33
Q ss_pred HHHHHHHHHHHHhCCCCCCEEEE-EEecCCHHHHHHHhhhh
Q 044681 121 LEKLFEVTTWSQLGVHNKPVAII-MVSASNAKELVQKLEDY 160 (184)
Q Consensus 121 L~El~~~l~~~qlg~~~kPvvl~-i~~~~~~~e~~~~l~~~ 160 (184)
++...++. .+.||+.+. +-.....+.+.+||.++
T Consensus 80 --~lT~~~a~----~~~KP~l~i~~~~~~~~~~v~~wl~~~ 114 (145)
T PF12694_consen 80 --ALTVEFAR----KHGKPCLHIDLSIPEAAAAVAEWLREH 114 (145)
T ss_dssp --HHHHHHHH----HTT--EEEETS-HHHHHHHHHHHHHHT
T ss_pred --HHHHHHHH----HhCCCEEEEecCcccHHHHHHHHHHHC
Confidence 33332332 368998753 11123345566666654
No 10
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=94.98 E-value=0.92 Score=37.04 Aligned_cols=105 Identities=18% Similarity=0.197 Sum_probs=53.8
Q ss_pred CceEEEEcCCCCC------CChHHHHHHHHHHH---HHHHCCCeEEEcCCCcchhHHHHHHHHhcCC-----eEEEEecC
Q 044681 11 FKRVCVFCGSSPD------YKYCYRKAAIDLGN---ELVSKGLDLVYGGGNVGLMGLISEEVHRGRR-----HVLGIIPR 76 (184)
Q Consensus 11 ~~~I~Vfggs~~~------~~~~~~~~A~~lG~---~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG-----~viGviP~ 76 (184)
|+++||-|-.... .+|.+...-..|-+ .+-++|++-++-||..|+---++.-|++... +++-++|=
T Consensus 1 M~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf 80 (177)
T PF06908_consen 1 MKRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPF 80 (177)
T ss_dssp --EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESS
T ss_pred CeEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcc
Confidence 4677777754421 34554444444444 3445788776444455999999999998543 44555663
Q ss_pred ccccccccCC----------CCceEeec--------CChHHHHHHHHHhCCEEEEec
Q 044681 77 ALMKKELTGV----------TLGEVKPV--------DHMHQRKAEMARYADCFIVLP 115 (184)
Q Consensus 77 ~~~~~e~~~~----------~~~~~~~~--------~~~~~Rk~~m~~~sDa~IvlP 115 (184)
......+... ..+....+ ..|..|++.|+++||.+|++=
T Consensus 81 ~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavy 137 (177)
T PF06908_consen 81 ENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVY 137 (177)
T ss_dssp B-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE-
T ss_pred cchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEE
Confidence 2211111000 01222222 245799999999999888874
No 11
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=94.63 E-value=0.074 Score=39.47 Aligned_cols=44 Identities=27% Similarity=0.269 Sum_probs=37.2
Q ss_pred cCChHHHHHHHHHhCCEEEEecCc----cccHHHHHHHHHHHHhCCCCCCEEEE
Q 044681 94 VDHMHQRKAEMARYADCFIVLPGG----FGTLEKLFEVTTWSQLGVHNKPVAII 143 (184)
Q Consensus 94 ~~~~~~Rk~~m~~~sDa~IvlPGG----~GTL~El~~~l~~~qlg~~~kPvvl~ 143 (184)
.....+|....++.||++|+.-.+ .||.-|+..++.+ +|||++.
T Consensus 48 ~~~i~~~d~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~al------gkpv~~~ 95 (113)
T PF05014_consen 48 AREIFERDLEGIRECDIVIANLDGFRPDSGTAFELGYAYAL------GKPVILL 95 (113)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECSSS--HHHHHHHHHHHHT------TSEEEEE
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHC------CCEEEEE
Confidence 345578888899999999888776 9999999999987 8999863
No 12
>PRK10565 putative carbohydrate kinase; Provisional
Probab=92.60 E-value=0.6 Score=43.86 Aligned_cols=95 Identities=21% Similarity=0.202 Sum_probs=53.4
Q ss_pred CCCeEEEcCCCcchhHHH---HHHHHhcC-CeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEEecCc
Q 044681 42 KGLDLVYGGGNVGLMGLI---SEEVHRGR-RHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGG 117 (184)
Q Consensus 42 ~G~~lV~GGg~~GlM~a~---a~ga~~~G-G~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG 117 (184)
+|..+|.||.. +.++|+ +++|+..| |.|.=+.|+...+ ......-++.+.+...+.-.-++..+|++++=||
T Consensus 254 ~G~vliigGs~-~~~GA~~Laa~aAlr~GaGlv~~~~~~~~~~--~~~~~~Pe~~~~~~~~~~~~~~~~~~~a~viGpG- 329 (508)
T PRK10565 254 HGRLLIIGGDH-GTAGAIRMAGEAALRSGAGLVRVLTRSENIA--PLLTARPELMVHELTPDSLEESLEWADVVVIGPG- 329 (508)
T ss_pred CCeEEEEECCC-CCccHHHHHHHHHHHhCCCeEEEEeChhhHH--HHhhcCceeEEecCCHhHHHHHhhcCCEEEEeCC-
Confidence 49999999987 777775 67777776 4554445543211 1111222333322111212223477899888886
Q ss_pred cccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 118 FGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 118 ~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.|+-++...++.. +...++|+||
T Consensus 330 lg~~~~~~~~~~~--~~~~~~P~VL 352 (508)
T PRK10565 330 LGQQEWGKKALQK--VENFRKPMLW 352 (508)
T ss_pred CCCCHHHHHHHHH--HHhcCCCEEE
Confidence 6775555443322 2235789998
No 13
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=91.78 E-value=1.6 Score=34.51 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCEEEEecCc----cccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHh
Q 044681 98 HQRKAEMARYADCFIVLPGG----FGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKL 157 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlPGG----~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l 157 (184)
.-|.+.+++.||.+||.-|- ++|--....+.+ .+||+|+ ...++++|+++++.|
T Consensus 63 ~iRT~~li~~aDvVVvrFGekYKQWNaAfDAg~a~A------lgKplI~lh~~~~~HpLKEvda~A~a~~et~~Qvv~iL 136 (141)
T PF11071_consen 63 AIRTRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAA------LGKPLITLHPEELHHPLKEVDAAALAVAETPEQVVEIL 136 (141)
T ss_pred HHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH------cCCCeEEecchhccccHHHHhHhhHhhhCCHHHHHHHH
Confidence 67889999999999998763 222222222232 3799988 456688999999988
Q ss_pred h
Q 044681 158 E 158 (184)
Q Consensus 158 ~ 158 (184)
+
T Consensus 137 ~ 137 (141)
T PF11071_consen 137 R 137 (141)
T ss_pred H
Confidence 6
No 14
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=91.77 E-value=3.6 Score=36.38 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=34.6
Q ss_pred HHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEE-------------------EEecCCHHHHHHHhhhhc
Q 044681 101 KAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAII-------------------MVSASNAKELVQKLEDYE 161 (184)
Q Consensus 101 k~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~-------------------i~~~~~~~e~~~~l~~~~ 161 (184)
-.-++..||++|.-+| .+|+.| +++. ++|+++. -....|++++.+.+.+..
T Consensus 276 ~~~l~~aaDv~V~~~g-~~ti~E---Ama~------g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll 345 (382)
T PLN02605 276 MEEWMGACDCIITKAG-PGTIAE---ALIR------GLPIILNGYIPGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWF 345 (382)
T ss_pred HHHHHHhCCEEEECCC-cchHHH---HHHc------CCCEEEecCCCccchhhHHHHHhCCceeecCCHHHHHHHHHHHH
Confidence 4456689999997555 478655 4443 7898881 123478888888887754
No 15
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=91.58 E-value=2.4 Score=38.18 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE------------------------EEEecC--C
Q 044681 96 HMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI------------------------IMVSAS--N 149 (184)
Q Consensus 96 ~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl------------------------~i~~~~--~ 149 (184)
.|..........||.+|.=+| ..|+.|+.. .++|.++ .++..+ +
T Consensus 241 ~f~~dm~~~~~~ADLvIsRaG-a~Ti~E~~a---------~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt 310 (357)
T COG0707 241 PFIDDMAALLAAADLVISRAG-ALTIAELLA---------LGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELT 310 (357)
T ss_pred eHHhhHHHHHHhccEEEeCCc-ccHHHHHHH---------hCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCC
Confidence 344445566688998776654 579999764 3789999 222222 4
Q ss_pred HHHHHHHhhhhcC
Q 044681 150 AKELVQKLEDYEP 162 (184)
Q Consensus 150 ~~e~~~~l~~~~~ 162 (184)
++++.+.|.+...
T Consensus 311 ~~~l~~~i~~l~~ 323 (357)
T COG0707 311 PEKLAELILRLLS 323 (357)
T ss_pred HHHHHHHHHHHhc
Confidence 7788888887654
No 16
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=91.07 E-value=2.9 Score=37.28 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-------------------EEEecCCHHHHHHHhhh
Q 044681 99 QRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-------------------IMVSASNAKELVQKLED 159 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-------------------~i~~~~~~~e~~~~l~~ 159 (184)
++-.-++..||++|.-|||. |+.| ++.. ++|+++ .-+..+|++++.+.|.+
T Consensus 265 ~~~~~~~~~aDl~I~k~gg~-tl~E---A~a~------G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ 334 (391)
T PRK13608 265 KHMNEWMASSQLMITKPGGI-TISE---GLAR------CIPMIFLNPAPGQELENALYFEEKGFGKIADTPEEAIKIVAS 334 (391)
T ss_pred chHHHHHHhhhEEEeCCchH-HHHH---HHHh------CCCEEECCCCCCcchhHHHHHHhCCcEEEeCCHHHHHHHHHH
Confidence 44455679999999877764 6444 4444 789988 12235688888888887
Q ss_pred hc
Q 044681 160 YE 161 (184)
Q Consensus 160 ~~ 161 (184)
..
T Consensus 335 ll 336 (391)
T PRK13608 335 LT 336 (391)
T ss_pred Hh
Confidence 64
No 17
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.78 E-value=9.4 Score=32.43 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE------------------------EEEecC--CHHH
Q 044681 99 QRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI------------------------IMVSAS--NAKE 152 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl------------------------~i~~~~--~~~e 152 (184)
..-.-+...||++|. ++|.+| +.|++++ ++|++. .++-.+ |+++
T Consensus 244 ~~~~~~l~~ad~~v~-~sg~~t---~~Eam~~------G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~ 313 (350)
T cd03785 244 DDMAAAYAAADLVIS-RAGAST---VAELAAL------GLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPER 313 (350)
T ss_pred hhHHHHHHhcCEEEE-CCCHhH---HHHHHHh------CCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHH
Confidence 344456688999885 555566 4445554 788874 112222 7888
Q ss_pred HHHHhhhhc
Q 044681 153 LVQKLEDYE 161 (184)
Q Consensus 153 ~~~~l~~~~ 161 (184)
+.+.|.++.
T Consensus 314 l~~~i~~ll 322 (350)
T cd03785 314 LAAALLELL 322 (350)
T ss_pred HHHHHHHHh
Confidence 888887764
No 18
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=90.73 E-value=3.1 Score=28.97 Aligned_cols=63 Identities=16% Similarity=0.064 Sum_probs=45.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHC-CCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCc
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSK-GLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRA 77 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~-G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~ 77 (184)
++|.|-||.... | +......|-+.+++. ...||+||.+.|.-..+.+=|.+.|=.++-+-|++
T Consensus 4 ~rVli~GgR~~~-D--~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~adW 67 (71)
T PF10686_consen 4 MRVLITGGRDWT-D--HELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPADW 67 (71)
T ss_pred CEEEEEECCccc-c--HHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcCh
Confidence 456665554443 3 333556677777774 67788999955999999999999988888776654
No 19
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=89.99 E-value=6.3 Score=33.31 Aligned_cols=84 Identities=24% Similarity=0.253 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCcchhHHHHHHHHhcCC-eEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEEecCcccc
Q 044681 42 KGLDLVYGGGNVGLMGLISEEVHRGRR-HVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGT 120 (184)
Q Consensus 42 ~G~~lV~GGg~~GlM~a~a~ga~~~GG-~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GT 120 (184)
.++.|||=||. |.- .+.+.+.+..+ .++=+-|.. .+..... +.+...-...-.-++..||++|-- ||++|
T Consensus 192 ~~~iLv~~gg~-~~~-~~~~~l~~~~~~~~~v~g~~~---~~~~~~n---i~~~~~~~~~~~~~m~~ad~vIs~-~G~~t 262 (318)
T PF13528_consen 192 EPKILVYFGGG-GPG-DLIEALKALPDYQFIVFGPNA---ADPRPGN---IHVRPFSTPDFAELMAAADLVISK-GGYTT 262 (318)
T ss_pred CCEEEEEeCCC-cHH-HHHHHHHhCCCCeEEEEcCCc---ccccCCC---EEEeecChHHHHHHHHhCCEEEEC-CCHHH
Confidence 56777765554 444 44555555553 333221221 1111222 222211112233345889988876 88999
Q ss_pred HHHHHHHHHHHHhCCCCCCEEEE
Q 044681 121 LEKLFEVTTWSQLGVHNKPVAII 143 (184)
Q Consensus 121 L~El~~~l~~~qlg~~~kPvvl~ 143 (184)
+.|... .++|++++
T Consensus 263 ~~Ea~~---------~g~P~l~i 276 (318)
T PF13528_consen 263 ISEALA---------LGKPALVI 276 (318)
T ss_pred HHHHHH---------cCCCEEEE
Confidence 887553 38999873
No 20
>PRK13660 hypothetical protein; Provisional
Probab=89.69 E-value=10 Score=31.18 Aligned_cols=142 Identities=17% Similarity=0.096 Sum_probs=75.3
Q ss_pred CceEEEEcCCCCCC------ChHH----HHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCC-----eEEEEec
Q 044681 11 FKRVCVFCGSSPDY------KYCY----RKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRR-----HVLGIIP 75 (184)
Q Consensus 11 ~~~I~Vfggs~~~~------~~~~----~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG-----~viGviP 75 (184)
|++++|-|-..... +|.. ...-++|-+.+. .|+.-+.-||..|+---++.-|++... +++-++|
T Consensus 1 mk~~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e-~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~P 79 (182)
T PRK13660 1 MKRLLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLE-EGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITP 79 (182)
T ss_pred CeEEEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHH-CCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeC
Confidence 56777777655332 2221 122234444444 677766444455999988888888532 3555566
Q ss_pred CccccccccC----------CCCceEee-c-------CChHHHHHHHHHhCCEEEEecCc---cccHHHHHHHHHHHHhC
Q 044681 76 RALMKKELTG----------VTLGEVKP-V-------DHMHQRKAEMARYADCFIVLPGG---FGTLEKLFEVTTWSQLG 134 (184)
Q Consensus 76 ~~~~~~e~~~----------~~~~~~~~-~-------~~~~~Rk~~m~~~sDa~IvlPGG---~GTL~El~~~l~~~qlg 134 (184)
=......+.. ...+.+.. . ..|..|++.|+++||++|++=-| -||---+-.+. .+-.
T Consensus 80 F~~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~YD~e~~Ggt~y~~~~A~--k~~~ 157 (182)
T PRK13660 80 FEEHGENWNEANQEKLANILKQADFVKSISKRPYESPAQFRQYNQFMLEHTDGALLVYDEENEGSPKYFYEAAK--KKQE 157 (182)
T ss_pred ccchhhcCCHHHHHHHHHHHHhCCEEEEecCCCCCChHHHHHHHHHHHHccCeEEEEEcCCCCCChHHHHHHHH--Hhhh
Confidence 2211111100 01122211 1 23789999999999988886432 23322111111 1112
Q ss_pred CCCCCEEEEEEecCCHHHHHHHhhhh
Q 044681 135 VHNKPVAIIMVSASNAKELVQKLEDY 160 (184)
Q Consensus 135 ~~~kPvvl~i~~~~~~~e~~~~l~~~ 160 (184)
.++.||.++ +|++|=+..+++
T Consensus 158 ~~~y~i~~I-----~~~~l~~~~~~~ 178 (182)
T PRK13660 158 KEDYPLDLI-----TFDDLQEIAEEW 178 (182)
T ss_pred ccCceEEEe-----CHHHHHHHHHHh
Confidence 357777653 788777776655
No 21
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=89.07 E-value=3.4 Score=32.71 Aligned_cols=58 Identities=19% Similarity=0.309 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCEEEEecCc-cccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhh
Q 044681 98 HQRKAEMARYADCFIVLPGG-FGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLE 158 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlPGG-~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~ 158 (184)
.-|-+.+++.||.+||.-|- +=-.+--|.+=.-.. .+||.|+ ...++++|+++++.|+
T Consensus 66 aiRT~~li~~aDvvVvrFGekYKQWNaAfDAg~aaA---lgKplI~lh~~~~~HpLKEvdaaA~avaetp~Qvv~iL~ 140 (144)
T TIGR03646 66 NIRTRKLIEKADVVIALFGEKYKQWNAAFDAGYAAA---LGKPLIILRPEELIHPLKEVDNKAQAVVETPEQAIETLK 140 (144)
T ss_pred hHHHHHHHhhCCEEEEEechHHHHHHHHhhHHHHHH---cCCCeEEecchhccccHHHHhHHHHHHhcCHHHHHHHHH
Confidence 67888999999999998763 111222222211111 3789988 4566789999999886
No 22
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=87.31 E-value=14 Score=32.46 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=21.6
Q ss_pred HHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 104 MARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 104 m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
++..||++| ..||.||+.|... +++|+++
T Consensus 288 ll~~~~~~I-~hgG~~t~~Eal~---------~G~P~v~ 316 (392)
T TIGR01426 288 ILKKADAFI-THGGMNSTMEALF---------NGVPMVA 316 (392)
T ss_pred HHhhCCEEE-ECCCchHHHHHHH---------hCCCEEe
Confidence 457899655 6889999877543 4889988
No 23
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=87.23 E-value=9.4 Score=33.11 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=21.4
Q ss_pred HHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 102 AEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 102 ~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
..+...||.+|. ++|..|+ |. +.+ ++|+++
T Consensus 256 ~~~~~~aDl~v~-~sG~~~l-Ea---~a~------G~PvI~ 285 (380)
T PRK00025 256 REAMAAADAALA-ASGTVTL-EL---ALL------KVPMVV 285 (380)
T ss_pred HHHHHhCCEEEE-CccHHHH-HH---HHh------CCCEEE
Confidence 456688998887 6777777 65 332 789886
No 24
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=86.99 E-value=1.4 Score=38.65 Aligned_cols=46 Identities=26% Similarity=0.535 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHCCCe-EEEcCCCcchhHHHHHHHHhcCCeEEEEecCc
Q 044681 31 AAIDLGNELVSKGLD-LVYGGGNVGLMGLISEEVHRGRRHVLGIIPRA 77 (184)
Q Consensus 31 ~A~~lG~~LA~~G~~-lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~ 77 (184)
.|.++.+.++..++. |+.+||. |...+++.|..+.+...+||+|..
T Consensus 46 ~a~~~a~~a~~~~~D~via~GGD-GTv~evingl~~~~~~~LgilP~G 92 (301)
T COG1597 46 DAIEIAREAAVEGYDTVIAAGGD-GTVNEVANGLAGTDDPPLGILPGG 92 (301)
T ss_pred cHHHHHHHHHhcCCCEEEEecCc-chHHHHHHHHhcCCCCceEEecCC
Confidence 577777777777665 4577887 999999999999999889999954
No 25
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=86.68 E-value=15 Score=32.12 Aligned_cols=54 Identities=30% Similarity=0.450 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-------------------EEEecCCHHHHHHHhhh
Q 044681 99 QRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-------------------IMVSASNAKELVQKLED 159 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-------------------~i~~~~~~~e~~~~l~~ 159 (184)
++-.-++..||++|.-+|| .|+. |++.. ++|+|+ ..+...|++++.+.|.+
T Consensus 265 ~~~~~l~~~aD~~v~~~gg-~t~~---EA~a~------g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ 334 (380)
T PRK13609 265 ENIDELFRVTSCMITKPGG-ITLS---EAAAL------GVPVILYKPVPGQEKENAMYFERKGAAVVIRDDEEVFAKTEA 334 (380)
T ss_pred hhHHHHHHhccEEEeCCCc-hHHH---HHHHh------CCCEEECCCCCCcchHHHHHHHhCCcEEEECCHHHHHHHHHH
Confidence 3344566889998865554 4644 45544 788876 12335688888888887
Q ss_pred hcC
Q 044681 160 YEP 162 (184)
Q Consensus 160 ~~~ 162 (184)
...
T Consensus 335 ll~ 337 (380)
T PRK13609 335 LLQ 337 (380)
T ss_pred HHC
Confidence 643
No 26
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=86.17 E-value=20 Score=30.41 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=19.5
Q ss_pred HHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 103 EMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 103 ~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
-++..||++|. ++|..|+-| ++.. ++|++.
T Consensus 246 ~~l~~ad~~v~-~~g~~~l~E---a~~~------g~Pvv~ 275 (348)
T TIGR01133 246 AAYAAADLVIS-RAGASTVAE---LAAA------GVPAIL 275 (348)
T ss_pred HHHHhCCEEEE-CCChhHHHH---HHHc------CCCEEE
Confidence 45688999886 445556545 4433 788875
No 27
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=85.67 E-value=19 Score=31.85 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=21.2
Q ss_pred HHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 103 EMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 103 ~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.++..||++|. -||.+|+.|+.. .++|+++
T Consensus 248 ~~~~~adlvIs-r~G~~t~~E~~~---------~g~P~I~ 277 (352)
T PRK12446 248 DILAITDFVIS-RAGSNAIFEFLT---------LQKPMLL 277 (352)
T ss_pred HHHHhCCEEEE-CCChhHHHHHHH---------cCCCEEE
Confidence 46688995554 556678888664 4788887
No 28
>PRK11914 diacylglycerol kinase; Reviewed
Probab=81.74 E-value=27 Score=30.03 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=28.3
Q ss_pred EEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------EEEec-CCHHHHHHHhhh
Q 044681 111 FIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------IMVSA-SNAKELVQKLED 159 (184)
Q Consensus 111 ~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------~i~~~-~~~~e~~~~l~~ 159 (184)
.|+.-||=||++|+...+. ..+.|+.+ .+-.. ++++++++.|.+
T Consensus 67 ~vvv~GGDGTi~evv~~l~-----~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~ 122 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLA-----GTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVD 122 (306)
T ss_pred EEEEECCchHHHHHhHHhc-----cCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHc
Confidence 4567788888888887662 13456655 23323 368888887765
No 29
>cd00587 HCP_like The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (ACS), and carbon monoxide dehydrogenase (CODH), all of which contain [Fe4-S4] metal clusters at their active sites. These proteins have a conserved alpha-beta rossman fold domain. HCP, formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. Acetyl-CoA synthase (ACS), is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide and CoA.
Probab=81.67 E-value=21 Score=31.06 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=32.0
Q ss_pred cCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 9 SRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 9 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
-++|-|++++|+.... .+.+...++++.|-++++-+++-|+
T Consensus 92 G~I~Gv~~ivGC~n~~--~~~~~~~~iakeL~k~d~LVlt~GC 132 (258)
T cd00587 92 GTIPGVALIVGCNNDK--KQDKAYADIAKELMKRGVMVLATGC 132 (258)
T ss_pred CCCCeEEEEEeCCCCC--ccchHHHHHHHHHHhCCEEEEecch
Confidence 3678888888887542 5556778899999999999998776
No 30
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=80.77 E-value=40 Score=29.91 Aligned_cols=62 Identities=19% Similarity=0.126 Sum_probs=37.9
Q ss_pred EeecCChHHHHHHHHHhCCEEEEec---CccccHHHHHHHHHHHHhCCCCCCEEE------------------EEEecCC
Q 044681 91 VKPVDHMHQRKAEMARYADCFIVLP---GGFGTLEKLFEVTTWSQLGVHNKPVAI------------------IMVSASN 149 (184)
Q Consensus 91 ~~~~~~~~~Rk~~m~~~sDa~IvlP---GG~GTL~El~~~l~~~qlg~~~kPvvl------------------~i~~~~~ 149 (184)
+++.+++.+ ...+...||.+++.| .+.|.- +.|+++. ++||+. .++..+|
T Consensus 304 v~l~~~~~e-l~~~y~~aDi~~v~~S~~e~~g~~--~lEAma~------G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~d 374 (425)
T PRK05749 304 VLLGDTMGE-LGLLYAIADIAFVGGSLVKRGGHN--PLEPAAF------GVPVISGPHTFNFKEIFERLLQAGAAIQVED 374 (425)
T ss_pred EEEEecHHH-HHHHHHhCCEEEECCCcCCCCCCC--HHHHHHh------CCCEEECCCccCHHHHHHHHHHCCCeEEECC
Confidence 444555443 445558899877642 123332 5677765 899987 3334567
Q ss_pred HHHHHHHhhhhc
Q 044681 150 AKELVQKLEDYE 161 (184)
Q Consensus 150 ~~e~~~~l~~~~ 161 (184)
++++.+.|.+..
T Consensus 375 ~~~La~~l~~ll 386 (425)
T PRK05749 375 AEDLAKAVTYLL 386 (425)
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
No 31
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=80.59 E-value=33 Score=30.65 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=19.5
Q ss_pred HHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 104 MARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 104 m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.+..||++|.-. |..|+ |++. .++|+|+
T Consensus 264 ~l~aADl~V~~S-Gt~tl-Ea~a---------~G~P~Vv 291 (385)
T TIGR00215 264 AMFAADAALLAS-GTAAL-EAAL---------IKTPMVV 291 (385)
T ss_pred HHHhCCEEeecC-CHHHH-HHHH---------cCCCEEE
Confidence 558899887766 56687 6553 3678777
No 32
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=80.28 E-value=36 Score=29.02 Aligned_cols=40 Identities=28% Similarity=0.197 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCC
Q 044681 98 HQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASN 149 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~ 149 (184)
...-.-++..||.+|. .|| +|+-|+. ++ ++|+++.-+ +++
T Consensus 232 ~~~m~~lm~~aDl~Is-~~G-~T~~E~~---a~------g~P~i~i~~-~~n 271 (279)
T TIGR03590 232 VENMAELMNEADLAIG-AAG-STSWERC---CL------GLPSLAICL-AEN 271 (279)
T ss_pred HHHHHHHHHHCCEEEE-CCc-hHHHHHH---Hc------CCCEEEEEe-ccc
Confidence 3444456688999998 566 8977755 33 899986444 444
No 33
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=79.14 E-value=15 Score=31.06 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 99 QRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
++-.-++..+|++++ .+|.++-+.+.++..... .+.+|+++
T Consensus 84 ~~~~~~~~~~davvi-g~Gl~~~~~~~~l~~~~~--~~~~pvVl 124 (272)
T TIGR00196 84 DEDEELLERYDVVVI-GPGLGQDPSFKKAVEEVL--ELDKPVVL 124 (272)
T ss_pred HHHHhhhccCCEEEE-cCCCCCCHHHHHHHHHHH--hcCCCEEE
Confidence 333344567787766 556888655443333222 24678887
No 34
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=79.12 E-value=2.1 Score=33.20 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=20.9
Q ss_pred HHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 102 AEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 102 ~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.-++..|| +|+--||.||+.|+.. .++|.|+
T Consensus 67 ~~~m~~aD-lvIs~aG~~Ti~E~l~---------~g~P~I~ 97 (167)
T PF04101_consen 67 AELMAAAD-LVISHAGAGTIAEALA---------LGKPAIV 97 (167)
T ss_dssp HHHHHHHS-EEEECS-CHHHHHHHH---------CT--EEE
T ss_pred HHHHHHcC-EEEeCCCccHHHHHHH---------cCCCeec
Confidence 34568899 6777899999888664 4899886
No 35
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=77.55 E-value=34 Score=29.88 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=22.5
Q ss_pred HHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 103 EMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 103 ~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.++.++|+|| --||.||+.|... +++|+++
T Consensus 300 ~ll~~~d~~I-~hgG~~t~~eal~---------~GvP~v~ 329 (401)
T cd03784 300 WLLPRCAAVV-HHGGAGTTAAALR---------AGVPQLV 329 (401)
T ss_pred HHhhhhheee-ecCCchhHHHHHH---------cCCCEEe
Confidence 3457799888 6677899877553 4899988
No 36
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=73.36 E-value=16 Score=28.73 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=39.8
Q ss_pred hCCEEEEec----CccccHHHHHHHHHH--HHhCC-CCCCEEEEEEecCCHHHHHHHhh
Q 044681 107 YADCFIVLP----GGFGTLEKLFEVTTW--SQLGV-HNKPVAIIMVSASNAKELVQKLE 158 (184)
Q Consensus 107 ~sDa~IvlP----GG~GTL~El~~~l~~--~qlg~-~~kPvvl~i~~~~~~~e~~~~l~ 158 (184)
.-|++|+|+ |+.=-.+-+....+. +++.+ +++||++.+..+++.+++++...
T Consensus 62 ~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~~~~PV~~gvlt~~~~eqa~~R~~ 120 (144)
T PF00885_consen 62 RYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLEYGIPVIFGVLTPDTEEQALERAG 120 (144)
T ss_dssp TESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSHHHHHHHCE
T ss_pred CccEEEEeccccCCCchHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCHHHHHHHhc
Confidence 379999987 777777777766554 34443 58999999998999999999876
No 37
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=73.26 E-value=59 Score=27.91 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=43.3
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCC-eEEEEecCccccccccCCCC-ceEeecCChHHHHHHHHHhCCEEEEecCcccc
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRR-HVLGIIPRALMKKELTGVTL-GEVKPVDHMHQRKAEMARYADCFIVLPGGFGT 120 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG-~viGviP~~~~~~e~~~~~~-~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GT 120 (184)
.+.|||+|+. | ...+.+...+... .++---++.. ...+ ..+.+.....+.-.-++..||++|.- ||.+|
T Consensus 189 ~~iLv~~g~~-~-~~~l~~~l~~~~~~~~i~~~~~~~------~~~~~~~v~~~~~~~~~~~~~l~~ad~vI~~-~G~~t 259 (321)
T TIGR00661 189 DYILVYIGFE-Y-RYKILELLGKIANVKFVCYSYEVA------KNSYNENVEIRRITTDNFKELIKNAELVITH-GGFSL 259 (321)
T ss_pred CcEEEECCcC-C-HHHHHHHHHhCCCeEEEEeCCCCC------ccccCCCEEEEECChHHHHHHHHhCCEEEEC-CChHH
Confidence 6678998665 4 4656555444443 2221122211 1111 12322222223445566889988775 67788
Q ss_pred HHHHHHHHHHHHhCCCCCCEEE
Q 044681 121 LEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 121 L~El~~~l~~~qlg~~~kPvvl 142 (184)
+.|.. . +++|+++
T Consensus 260 ~~Ea~---~------~g~P~l~ 272 (321)
T TIGR00661 260 ISEAL---S------LGKPLIV 272 (321)
T ss_pred HHHHH---H------cCCCEEE
Confidence 76633 3 4899988
No 38
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=72.58 E-value=42 Score=25.94 Aligned_cols=115 Identities=10% Similarity=0.147 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHH
Q 044681 27 CYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMAR 106 (184)
Q Consensus 27 ~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~ 106 (184)
.+---..-+...|..+||.++|-|-. ==.+.+.+.|.+.+-.++++. .... . .......+- ..+-+
T Consensus 15 ~H~lG~~iv~~~lr~~G~eVi~LG~~-vp~e~i~~~a~~~~~d~V~lS--~~~~-----~---~~~~~~~~~---~~L~~ 80 (137)
T PRK02261 15 CHAVGNKILDRALTEAGFEVINLGVM-TSQEEFIDAAIETDADAILVS--SLYG-----H---GEIDCRGLR---EKCIE 80 (137)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEc--Cccc-----c---CHHHHHHHH---HHHHh
Confidence 44334445556677799999999976 446778888999999999993 2211 0 011111111 11212
Q ss_pred --hCCEEEEecCcccc----HHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhhhcC
Q 044681 107 --YADCFIVLPGGFGT----LEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 107 --~sDa~IvlPGG~GT----L~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~~~~ 162 (184)
..|..|+++|..-+ ..|..+.+ .++|.. . .+--..++++++++|+++.+
T Consensus 81 ~~~~~~~i~vGG~~~~~~~~~~~~~~~l--~~~G~~---~--vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 81 AGLGDILLYVGGNLVVGKHDFEEVEKKF--KEMGFD---R--VFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred cCCCCCeEEEECCCCCCccChHHHHHHH--HHcCCC---E--EECcCCCHHHHHHHHHHHhc
Confidence 23677777777633 44444433 344421 1 22335789999999998743
No 39
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=71.65 E-value=63 Score=27.53 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE---------------EEEecCCHHHHHHHhhhhcC
Q 044681 98 HQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI---------------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl---------------~i~~~~~~~e~~~~l~~~~~ 162 (184)
...-..+...||++|.=+| |..+|.+ . .++|++. .+...+|++++.+.+.++..
T Consensus 268 ~~~~~~l~~~ad~~v~~Sg--gi~~Ea~---~------~g~PvI~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~i~~ll~ 336 (363)
T cd03786 268 YLYFLLLLKNADLVLTDSG--GIQEEAS---F------LGVPVLNLRDRTERPETVESGTNVLVGTDPEAILAAIEKLLS 336 (363)
T ss_pred HHHHHHHHHcCcEEEEcCc--cHHhhhh---h------cCCCEEeeCCCCccchhhheeeEEecCCCHHHHHHHHHHHhc
Confidence 3445566778999996555 5444433 2 3678877 23333479999999988654
Q ss_pred C
Q 044681 163 S 163 (184)
Q Consensus 163 ~ 163 (184)
.
T Consensus 337 ~ 337 (363)
T cd03786 337 D 337 (363)
T ss_pred C
Confidence 3
No 40
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=71.42 E-value=12 Score=29.72 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 28 YRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 28 ~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
+-.-+.-+.+.|+..|+.++++|.. =--+.+++.|.+....+|||.
T Consensus 25 Hd~gakvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvS 70 (143)
T COG2185 25 HDRGAKVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVS 70 (143)
T ss_pred cccchHHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEE
Confidence 4457788889999999999999988 445777888899999999993
No 41
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=70.64 E-value=14 Score=28.27 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCCC-cchhHHHHHHHHhcC
Q 044681 29 RKAAIDLGNELVS----KGLDLV-Y--GGGN-VGLMGLISEEVHRGR 67 (184)
Q Consensus 29 ~~~A~~lG~~LA~----~G~~lV-~--GGg~-~GlM~a~a~ga~~~G 67 (184)
.+.|+.+|+.||+ .|+.-| + ||.. -|-+.|+++++.++|
T Consensus 65 ~~aA~~vG~~la~ra~~~gi~~vvfDrgg~~YhGrv~A~a~~aRe~G 111 (114)
T TIGR00060 65 KDAAKKVGKLVAERLKEKGIKDVVFDRGGYKYHGRVAALAEAAREAG 111 (114)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcchHHHHHHHHHHHHhC
Confidence 5788888888887 465544 2 5543 589999999999977
No 42
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=70.15 E-value=21 Score=23.49 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=37.4
Q ss_pred EEEEecCccccHHHHHHHHHHHHhCCC-------CCCEEEEEEecCCHHHHHHHhhhh
Q 044681 110 CFIVLPGGFGTLEKLFEVTTWSQLGVH-------NKPVAIIMVSASNAKELVQKLEDY 160 (184)
Q Consensus 110 a~IvlPGG~GTL~El~~~l~~~qlg~~-------~kPvvl~i~~~~~~~e~~~~l~~~ 160 (184)
..|.+|...|.|.++..++.-.++++. ..+.++.+.. ++++.+.+.|++.
T Consensus 4 i~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~-~~~~~~~~~L~~~ 60 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIV-SDPDKAKEALKEA 60 (66)
T ss_pred EEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEE-CCHHHHHHHHHHC
Confidence 568899999999999999988776531 1234444444 8899999999864
No 43
>PRK00861 putative lipid kinase; Reviewed
Probab=69.58 E-value=11 Score=32.43 Aligned_cols=44 Identities=30% Similarity=0.526 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchhHHHHHHHHhcCCeEEEEecCc
Q 044681 32 AIDLGNELVSKGL-DLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRA 77 (184)
Q Consensus 32 A~~lG~~LA~~G~-~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~ 77 (184)
+.++.+..++.++ .||..||. |-.-.+..+.... +..+||+|..
T Consensus 46 a~~~a~~~~~~~~d~vv~~GGD-GTl~evv~~l~~~-~~~lgviP~G 90 (300)
T PRK00861 46 ADQLAQEAIERGAELIIASGGD-GTLSAVAGALIGT-DIPLGIIPRG 90 (300)
T ss_pred HHHHHHHHHhcCCCEEEEECCh-HHHHHHHHHHhcC-CCcEEEEcCC
Confidence 4555655656654 56678888 9999999998765 4679999843
No 44
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=69.49 E-value=9.7 Score=28.50 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCC--eEEEcCCCcchhHHHHHHHHhcCC---eEEEEecCc
Q 044681 31 AAIDLGNELVSKGL--DLVYGGGNVGLMGLISEEVHRGRR---HVLGIIPRA 77 (184)
Q Consensus 31 ~A~~lG~~LA~~G~--~lV~GGg~~GlM~a~a~ga~~~GG---~viGviP~~ 77 (184)
.++++.+....... .+|..||. |-.-.+..+..+... ..+|++|..
T Consensus 41 ~~~~~~~~~~~~~~~~~ivv~GGD-GTl~~vv~~l~~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 41 HAEALARILALDDYPDVIVVVGGD-GTLNEVVNGLMGSDREDKPPLGIIPAG 91 (130)
T ss_dssp HHHHHHHHHHHTTS-SEEEEEESH-HHHHHHHHHHCTSTSSS--EEEEEE-S
T ss_pred hHHHHHHHHhhccCccEEEEEcCc-cHHHHHHHHHhhcCCCccceEEEecCC
Confidence 33445554444554 77778888 888888888888765 479999853
No 45
>PRK13337 putative lipid kinase; Reviewed
Probab=69.29 E-value=13 Score=32.13 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCcchhHHHHHHHHhcCC-eEEEEecC
Q 044681 31 AAIDLGNELVSKGL-DLVYGGGNVGLMGLISEEVHRGRR-HVLGIIPR 76 (184)
Q Consensus 31 ~A~~lG~~LA~~G~-~lV~GGg~~GlM~a~a~ga~~~GG-~viGviP~ 76 (184)
.+.++.+.++++++ .||..||. |-.-.+.+|....+- ..+||+|.
T Consensus 45 ~a~~~a~~~~~~~~d~vvv~GGD-GTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 45 DATLAAERAVERKFDLVIAAGGD-GTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CHHHHHHHHHhcCCCEEEEEcCC-CHHHHHHHHHhhCCCCCcEEEECC
Confidence 34455555556654 56677778 999999998876643 57999994
No 46
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=68.75 E-value=51 Score=25.34 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHH
Q 044681 26 YCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMA 105 (184)
Q Consensus 26 ~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~ 105 (184)
+.|-..+.-+...|..+||.+++-|.. =--+.+.+.|.+.+..++++. .+.. .+ ......+..+ |-
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~-~s~e~~v~aa~e~~adii~iS--sl~~-----~~---~~~~~~~~~~---L~ 78 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLF-QTPEEIARQAVEADVHVVGVS--SLAG-----GH---LTLVPALRKE---LD 78 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEc--Cchh-----hh---HHHHHHHHHH---HH
Confidence 345456666777888899999999987 455678888999999999993 2210 00 1111122111 22
Q ss_pred Hh--CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhh
Q 044681 106 RY--ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLED 159 (184)
Q Consensus 106 ~~--sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~ 159 (184)
+. .+..|+++|...+ ++. + .+.++|... .+....++.+.++++.+
T Consensus 79 ~~g~~~i~vivGG~~~~-~~~-~--~l~~~Gvd~-----~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 79 KLGRPDILVVVGGVIPP-QDF-D--ELKEMGVAE-----IFGPGTPIPESAIFLLK 125 (132)
T ss_pred hcCCCCCEEEEeCCCCh-HhH-H--HHHHCCCCE-----EECCCCCHHHHHHHHHH
Confidence 21 2666777666764 222 2 355666532 44556789999988876
No 47
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=68.67 E-value=28 Score=29.02 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=44.7
Q ss_pred CCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEee--cCChHHHHHHHHHh---------CCE
Q 044681 42 KGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKP--VDHMHQRKAEMARY---------ADC 110 (184)
Q Consensus 42 ~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~--~~~~~~Rk~~m~~~---------sDa 110 (184)
.|-.+|||| . |..+.+|-.+.++++..++-| .+..+|++.. .+++ ..++-+..+...+. -|+
T Consensus 3 agrVivYGG-k-GALGSacv~~FkannywV~si--Dl~eNe~Ad~---sI~V~~~~swtEQe~~v~~~vg~sL~gekvDa 75 (236)
T KOG4022|consen 3 AGRVIVYGG-K-GALGSACVEFFKANNYWVLSI--DLSENEQADS---SILVDGNKSWTEQEQSVLEQVGSSLQGEKVDA 75 (236)
T ss_pred CceEEEEcC-c-chHhHHHHHHHHhcCeEEEEE--eecccccccc---eEEecCCcchhHHHHHHHHHHHHhhcccccce
Confidence 567899988 4 888999998999888776654 2333333222 1222 34555555544433 499
Q ss_pred EEEecCcc
Q 044681 111 FIVLPGGF 118 (184)
Q Consensus 111 ~IvlPGG~ 118 (184)
++.+.||+
T Consensus 76 v~CVAGGW 83 (236)
T KOG4022|consen 76 VFCVAGGW 83 (236)
T ss_pred EEEeeccc
Confidence 99888876
No 48
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=67.63 E-value=13 Score=31.82 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCcchhHHHHHHHHhcCC---eEEEEecC
Q 044681 31 AAIDLGNELVSKGL-DLVYGGGNVGLMGLISEEVHRGRR---HVLGIIPR 76 (184)
Q Consensus 31 ~A~~lG~~LA~~G~-~lV~GGg~~GlM~a~a~ga~~~GG---~viGviP~ 76 (184)
.|.++.+.+++.++ .||.-||. |-.-.+..|..+.+. ..+||+|.
T Consensus 40 ~a~~~a~~~~~~~~d~vv~~GGD-GTi~ev~ngl~~~~~~~~~~lgiiP~ 88 (293)
T TIGR03702 40 DAQRYVAEALALGVSTVIAGGGD-GTLREVATALAQIRDDAAPALGLLPL 88 (293)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCC-hHHHHHHHHHHhhCCCCCCcEEEEcC
Confidence 34556666666654 45566777 999999999986532 35999993
No 49
>PRK13054 lipid kinase; Reviewed
Probab=66.99 E-value=14 Score=31.73 Aligned_cols=44 Identities=27% Similarity=0.529 Sum_probs=29.2
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchhHHHHHHHHhcC---CeEEEEecC
Q 044681 32 AIDLGNELVSKGL-DLVYGGGNVGLMGLISEEVHRGR---RHVLGIIPR 76 (184)
Q Consensus 32 A~~lG~~LA~~G~-~lV~GGg~~GlM~a~a~ga~~~G---G~viGviP~ 76 (184)
|.++.+.+++.++ .||..||. |-.-.+..+..... ...+||+|.
T Consensus 45 a~~~a~~~~~~~~d~vvv~GGD-GTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 45 AARYVEEALALGVATVIAGGGD-GTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECCc-cHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 4445555545554 56677778 98888888887542 247999994
No 50
>PRK13057 putative lipid kinase; Reviewed
Probab=65.44 E-value=9.4 Score=32.62 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=34.1
Q ss_pred HhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------EEEecCCHHHHHHHhhh
Q 044681 106 RYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------IMVSASNAKELVQKLED 159 (184)
Q Consensus 106 ~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------~i~~~~~~~e~~~~l~~ 159 (184)
...| .|+.-||=||++|+...+.- .+.|+.+ .+-...+++++++.|.+
T Consensus 49 ~~~d-~iiv~GGDGTv~~v~~~l~~-----~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~ 107 (287)
T PRK13057 49 DGVD-LVIVGGGDGTLNAAAPALVE-----TGLPLGILPLGTANDLARTLGIPLDLEAAARVIAT 107 (287)
T ss_pred cCCC-EEEEECchHHHHHHHHHHhc-----CCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHc
Confidence 3346 45678999999999987732 3567666 34445789999888875
No 51
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=65.34 E-value=12 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=26.1
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
..|+|+|+|-|..+..+.| .+.+.|-++||.++
T Consensus 15 ~~K~IAvVG~S~~P~r~sy-----~V~kyL~~~GY~Vi 47 (140)
T COG1832 15 SAKTIAVVGASDKPDRPSY-----RVAKYLQQKGYRVI 47 (140)
T ss_pred hCceEEEEecCCCCCccHH-----HHHHHHHHCCCEEE
Confidence 3589999999887655544 57888899999987
No 52
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=64.21 E-value=17 Score=28.25 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=31.5
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE----------------------------------EEEecCCHHHH
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI----------------------------------IMVSASNAKEL 153 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl----------------------------------~i~~~~~~~e~ 153 (184)
.+++++.--+++.-.+++++..- .... |||++ .++.++|++|+
T Consensus 55 t~~I~ly~E~~~d~~~f~~~~~~--a~~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v~~~~el 131 (138)
T PF13607_consen 55 TRVIVLYLEGIGDGRRFLEAARR--AARR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRVDDLDEL 131 (138)
T ss_dssp --EEEEEES--S-HHHHHHHHHH--HCCC-S-EEEEE---------------------HHHHHHHHHHCTEEEESSHHHH
T ss_pred CCEEEEEccCCCCHHHHHHHHHH--HhcC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEECCHHHH
Confidence 55788888888888888887643 3334 99998 56778888888
Q ss_pred HHHhh
Q 044681 154 VQKLE 158 (184)
Q Consensus 154 ~~~l~ 158 (184)
++..+
T Consensus 132 ~~~~~ 136 (138)
T PF13607_consen 132 LDAAK 136 (138)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
No 53
>PRK00861 putative lipid kinase; Reviewed
Probab=64.20 E-value=11 Score=32.48 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=32.6
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------EEEecCCHHHHHHHhhh
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------IMVSASNAKELVQKLED 159 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------~i~~~~~~~e~~~~l~~ 159 (184)
.|. |+.-||=||++|+...+.- ++.|+.+ .+-...+++++++.|.+
T Consensus 58 ~d~-vv~~GGDGTl~evv~~l~~-----~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~ 114 (300)
T PRK00861 58 AEL-IIASGGDGTLSAVAGALIG-----TDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQ 114 (300)
T ss_pred CCE-EEEECChHHHHHHHHHHhc-----CCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHc
Confidence 454 5568999999999987732 2456665 34445688998888765
No 54
>PRK13055 putative lipid kinase; Reviewed
Probab=63.31 E-value=18 Score=31.87 Aligned_cols=45 Identities=20% Similarity=0.376 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCcchhHHHHHHHHhcC-CeEEEEecC
Q 044681 31 AAIDLGNELVSKGL-DLVYGGGNVGLMGLISEEVHRGR-RHVLGIIPR 76 (184)
Q Consensus 31 ~A~~lG~~LA~~G~-~lV~GGg~~GlM~a~a~ga~~~G-G~viGviP~ 76 (184)
.+.++.+..++.++ .||..||. |-+-.+..+....+ ...+||+|.
T Consensus 47 ~a~~~~~~~~~~~~d~vvv~GGD-GTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 47 SAKNEAKRAAEAGFDLIIAAGGD-GTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred cHHHHHHHHhhcCCCEEEEECCC-CHHHHHHHHHhhcCCCCcEEEECC
Confidence 34455555555553 45567778 99999999988654 456999994
No 55
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=62.42 E-value=18 Score=30.48 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHH----CCCeEEE---cCCC-cchhHHHHHHHHhcC
Q 044681 29 RKAAIDLGNELVS----KGLDLVY---GGGN-VGLMGLISEEVHRGR 67 (184)
Q Consensus 29 ~~~A~~lG~~LA~----~G~~lV~---GGg~-~GlM~a~a~ga~~~G 67 (184)
.++|+++|+.||+ .|+.=|. ||.. -|-+.|.|++|+++|
T Consensus 162 ieaA~~VGk~IAerAl~kGI~kVvFDRgGy~YHGRVkALAdaARe~G 208 (211)
T PTZ00032 162 IKAAYELGKLIGRKALSKGISKVRFDRAHYKYAGKVEALAEGARAVG 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCCeehhHHHHHHHHHHHcC
Confidence 4689999999988 4765553 6654 589999999999987
No 56
>PRK11914 diacylglycerol kinase; Reviewed
Probab=61.76 E-value=19 Score=31.04 Aligned_cols=44 Identities=32% Similarity=0.412 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCcchhHHHHHHHHhcCCeEEEEecC
Q 044681 31 AAIDLGNELVSKGL-DLVYGGGNVGLMGLISEEVHRGRRHVLGIIPR 76 (184)
Q Consensus 31 ~A~~lG~~LA~~G~-~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~ 76 (184)
.+.++.+.+++.++ .||..||. |-.-.++.+.... +..+||+|.
T Consensus 52 ~~~~~a~~~~~~~~d~vvv~GGD-GTi~evv~~l~~~-~~~lgiiP~ 96 (306)
T PRK11914 52 DARHLVAAALAKGTDALVVVGGD-GVISNALQVLAGT-DIPLGIIPA 96 (306)
T ss_pred HHHHHHHHHHhcCCCEEEEECCc-hHHHHHhHHhccC-CCcEEEEeC
Confidence 45556666666665 46677778 9999999887643 467999994
No 57
>PRK13059 putative lipid kinase; Reviewed
Probab=61.17 E-value=14 Score=31.84 Aligned_cols=50 Identities=18% Similarity=0.385 Sum_probs=34.1
Q ss_pred HhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------EEEecCCHHHHHHHhhh
Q 044681 106 RYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------IMVSASNAKELVQKLED 159 (184)
Q Consensus 106 ~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------~i~~~~~~~e~~~~l~~ 159 (184)
+..| .|+.-||=||++|+...+.. .+ .+.|+.+ .+-...+++++++.|.+
T Consensus 55 ~~~d-~vi~~GGDGTv~evv~gl~~--~~-~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~ 115 (295)
T PRK13059 55 ESYK-YILIAGGDGTVDNVVNAMKK--LN-IDLPIGILPVGTANDFAKFLGMPTDIGEACEQILK 115 (295)
T ss_pred cCCC-EEEEECCccHHHHHHHHHHh--cC-CCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHh
Confidence 3345 56678999999999987742 22 2356666 34445788998888775
No 58
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=61.04 E-value=59 Score=29.93 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=26.1
Q ss_pred ChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 96 HMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 96 ~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.|..|-..++..||.+|.+ ||++|.=| +++. +||.++
T Consensus 283 ~f~~~~~~ll~gA~~vVSm-~GYNTvCe---ILs~------~k~aLi 319 (400)
T COG4671 283 EFRNDFESLLAGARLVVSM-GGYNTVCE---ILSF------GKPALI 319 (400)
T ss_pred EhhhhHHHHHHhhheeeec-ccchhhhH---HHhC------CCceEE
Confidence 3455566677888988776 67999555 4444 788887
No 59
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=60.94 E-value=27 Score=27.97 Aligned_cols=53 Identities=19% Similarity=0.060 Sum_probs=37.3
Q ss_pred HhCCEEEEec----CccccHHHHHHHHHHHHhCC-CCCCEEEEEEecCCHHHHHHHhhh
Q 044681 106 RYADCFIVLP----GGFGTLEKLFEVTTWSQLGV-HNKPVAIIMVSASNAKELVQKLED 159 (184)
Q Consensus 106 ~~sDa~IvlP----GG~GTL~El~~~l~~~qlg~-~~kPvvl~i~~~~~~~e~~~~l~~ 159 (184)
...|++|+|+ |..--.+=+.-.-.++|+.+ +++||++ +..++|-+++++....
T Consensus 53 ~~~DaVIaLG~VIrGeT~Hfd~V~vs~GL~~lsl~~~~PVi~-VlT~e~eeQA~~Rag~ 110 (151)
T TIGR01506 53 EGCEMVITLGWVGPEEKDKLSYHEASTGLIQVQLMTNKHVID-VTVHEDEAEDPEELKV 110 (151)
T ss_pred CCCCEEEEeceEEcCCCCcEeHHHHHHHHHHHHhhhCCCEEE-EEeeCCHHHHHHHhcc
Confidence 4689999886 54444444433334455553 6899999 8889999999998864
No 60
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=60.63 E-value=7.2 Score=36.02 Aligned_cols=28 Identities=43% Similarity=0.622 Sum_probs=21.2
Q ss_pred CeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 44 LDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 44 ~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
-++|-|||++|+|.|+.-+ ++|.+|+=+
T Consensus 5 dviIIGgGpAGlMaA~~aa--~~G~~V~li 32 (408)
T COG2081 5 DVIIIGGGPAGLMAAISAA--KAGRRVLLI 32 (408)
T ss_pred eEEEECCCHHHHHHHHHHh--hcCCEEEEE
Confidence 3578899999999987654 567766654
No 61
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=60.60 E-value=34 Score=29.29 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=33.7
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------EEEecCCHHHHHHHhhh
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------IMVSASNAKELVQKLED 159 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------~i~~~~~~~e~~~~l~~ 159 (184)
.| +|+.-||=||++|+...+.-... ....|+.+ .+-...+++++++.+.+
T Consensus 53 ~d-~vv~~GGDGTi~ev~ngl~~~~~-~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~ 113 (293)
T TIGR03702 53 VS-TVIAGGGDGTLREVATALAQIRD-DAAPALGLLPLGTANDFATAAGIPLEPAKALKLALN 113 (293)
T ss_pred CC-EEEEEcCChHHHHHHHHHHhhCC-CCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHh
Confidence 35 56688999999999988732111 12346666 34445789999888764
No 62
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=60.42 E-value=32 Score=27.19 Aligned_cols=53 Identities=8% Similarity=0.172 Sum_probs=42.7
Q ss_pred HhCCEEEEec----CccccHHHHHHHHHH--HHhCC-CCCCEEEEEEecCCHHHHHHHhh
Q 044681 106 RYADCFIVLP----GGFGTLEKLFEVTTW--SQLGV-HNKPVAIIMVSASNAKELVQKLE 158 (184)
Q Consensus 106 ~~sDa~IvlP----GG~GTL~El~~~l~~--~qlg~-~~kPvvl~i~~~~~~~e~~~~l~ 158 (184)
..=|++|+|+ |..--.+-+....+. +++.+ +.+||++.+..+++.+++++...
T Consensus 65 ~~~DavIaLG~VIrGeT~H~e~V~~~v~~gl~~vsl~~~~PV~~GVLt~~~~eQA~~Rag 124 (141)
T PLN02404 65 GKYDAILCIGAVIRGDTTHYDAVANSAASGVLSAGLNSGVPCIFGVLTCDDMEQALNRAG 124 (141)
T ss_pred CCCCEEEEEEEEEeCCCchhHHHHHHHHHHHHHHHhccCCCEEEEEcCCCCHHHHHHHhC
Confidence 3568999887 888888888777654 35554 68999999999999999998876
No 63
>PRK13054 lipid kinase; Reviewed
Probab=60.30 E-value=36 Score=29.28 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=34.2
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------EEEecCCHHHHHHHhhh
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------IMVSASNAKELVQKLED 159 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------~i~~~~~~~e~~~~l~~ 159 (184)
..| .|+.-||=||++|+...+..... .++.|+.+ .+-...|++++++.|.+
T Consensus 56 ~~d-~vvv~GGDGTl~evv~~l~~~~~-~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~ 117 (300)
T PRK13054 56 GVA-TVIAGGGDGTINEVATALAQLEG-DARPALGILPLGTANDFATAAGIPLEPDKALKLAIE 117 (300)
T ss_pred CCC-EEEEECCccHHHHHHHHHHhhcc-CCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHh
Confidence 345 56688999999999988742111 12346665 34445689999888775
No 64
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes L18 from bacteria and L5 from eukaryotes. The ribosomal 5S RNA is the only known rRNA species to bind a ribosomal protein before its assembly into the ribosomal subunits []. In eukaryotes, the 5S rRNA molecule binds one protein species, a 34kDa protein which has been implicated in the intracellular transport of 5 S rRNA, while in bacteria it binds two or three different protein species []. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_M 4A1C_M 4A1A_M 4A17_M 3IZR_Q 3O58_E 1S1I_E 3IZS_Q 3O5H_E 1KQS_M ....
Probab=60.02 E-value=38 Score=25.66 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHH----CCC-eEEEcCCC---cchhHHHHHHHHhcCC
Q 044681 29 RKAAIDLGNELVS----KGL-DLVYGGGN---VGLMGLISEEVHRGRR 68 (184)
Q Consensus 29 ~~~A~~lG~~LA~----~G~-~lV~GGg~---~GlM~a~a~ga~~~GG 68 (184)
.++|+.+|+.||+ .|+ .++++=++ -|-+.|+++++.++|=
T Consensus 70 ~~aa~~vG~lla~ra~~~gi~~v~fdr~~~~y~grv~a~~~~~re~Gl 117 (119)
T PF00861_consen 70 VEAAYLVGELLAKRALEKGIAKVVFDRGGYKYHGRVKALADGAREGGL 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEECTSTSSSSSHHHHHHHHHHHTTC
T ss_pred EehHHHHHHHHHHHHHHcCCcEEEEcCCCCcccHHHHHHHHHHHHcCC
Confidence 4678888888877 586 44553222 5899999999999874
No 65
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=59.81 E-value=62 Score=28.24 Aligned_cols=62 Identities=26% Similarity=0.266 Sum_probs=39.2
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC------------------------------eEEEcCCCcchhH
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGL------------------------------DLVYGGGNVGLMG 57 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~------------------------------~lV~GGg~~GlM~ 57 (184)
++.+++|+|+.-.. ++...+.+.++.++|.++|+ .+++-||. |-|-
T Consensus 2 ~~~~~~v~iv~~~~---~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l 77 (291)
T PRK02155 2 KSQFKTVALIGRYQ---TPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGD-GTML 77 (291)
T ss_pred CCcCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCc-HHHH
Confidence 34577899996443 34444566666666655443 23455667 7777
Q ss_pred HHHHHHHhcCCeEEEE
Q 044681 58 LISEEVHRGRRHVLGI 73 (184)
Q Consensus 58 a~a~ga~~~GG~viGv 73 (184)
-+++.....+-.++||
T Consensus 78 ~~~~~~~~~~~pilGI 93 (291)
T PRK02155 78 GIGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHHhcCCCCCEEEE
Confidence 7777666666678887
No 66
>PF01820 Dala_Dala_lig_N: D-ala D-ala ligase N-terminus; InterPro: IPR011127 This entry represents the N-terminal region of the D-alanine--D-alanine ligase enzyme (6.3.2.4 from EC) which is thought to be involved in substrate binding []. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity, 0009252 peptidoglycan biosynthetic process, 0005618 cell wall; PDB: 4EG0_B 3E5N_A 3RFC_A 3R5F_A 1IOV_A 1IOW_A 2DLN_A 3Q1K_D 3I12_C 3N8D_B ....
Probab=58.93 E-value=13 Score=27.97 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|+|+|++|....+.+.=...|+.+-+.|.+.+|.++
T Consensus 1 m~v~vlfGG~S~EheVSl~Sa~~v~~~L~~~~y~v~ 36 (117)
T PF01820_consen 1 MRVAVLFGGRSSEHEVSLRSARNVYEALDKEKYEVI 36 (117)
T ss_dssp EEEEEEEETSSTTHHHHHHHHHHHHHHSHTTTEEEE
T ss_pred CeEEEEeccCchhHHHHHHHHHHHHHHHhhhcceEE
Confidence 466666666656667778899999999999999988
No 67
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit. L18 binds 5S rRNA and induces a conformational change that stimulates the binding of L5 to 5S rRNA. Association of 5S rRNA with 23S rRNA depends on the binding of L18 and L5 to 5S rRNA. L18/L5e is generally described as L18 in prokaryotes and archaea, and as L5e (or L5) in eukaryotes. In bacteria, the CP proteins L5, L18, and L25 are required for the ribosome to incorporate 5S rRNA into the large subunit, one of the last steps in ribosome assembly. In archaea, both L18 and L5 bind 5S rRNA; in eukaryotes, only the L18 homolog (L5e) binds 5S rRNA but a homolog to L5 is also identified.
Probab=58.65 E-value=28 Score=25.47 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHC----CCeEE---EcCCC-cchhHHHHHHHHhcC
Q 044681 29 RKAAIDLGNELVSK----GLDLV---YGGGN-VGLMGLISEEVHRGR 67 (184)
Q Consensus 29 ~~~A~~lG~~LA~~----G~~lV---~GGg~-~GlM~a~a~ga~~~G 67 (184)
.++|+.+|+.||++ |+.-+ -|+.. -|-+.|+++++.++|
T Consensus 56 ~~aA~~vG~~la~r~~~~gi~~vv~D~~~~~~~grv~a~~~~~r~~G 102 (103)
T cd00432 56 VEAAYLVGRLLAKRALEKGIKKVVFDRGGYRYHGRVKALAKGAREGG 102 (103)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCCCcccccHHHHHHHHHHHcC
Confidence 36888888888883 44433 25544 489999999999876
No 68
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=58.16 E-value=27 Score=30.01 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
+++|+|++|....+.+.=...++.+.+.|.+.||.++.
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~ 40 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVG 40 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEE
Confidence 34677777766666677778999999999999998653
No 69
>PRK08105 flavodoxin; Provisional
Probab=58.05 E-value=22 Score=27.73 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|.+|.|+-+|..++. .+.|++|.+.|.+.|+.+.
T Consensus 1 m~~i~I~YgS~tGnt---e~~A~~l~~~l~~~g~~~~ 34 (149)
T PRK08105 1 MAKVGIFVGTVYGNA---LLVAEEAEAILTAQGHEVT 34 (149)
T ss_pred CCeEEEEEEcCchHH---HHHHHHHHHHHHhCCCceE
Confidence 567889988888743 3578888888888888754
No 70
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=57.51 E-value=23 Score=33.12 Aligned_cols=45 Identities=13% Similarity=0.286 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHCCC-eEEEcCCCcchhHHHHHHHHhcC------CeEEEEecC
Q 044681 31 AAIDLGNELVSKGL-DLVYGGGNVGLMGLISEEVHRGR------RHVLGIIPR 76 (184)
Q Consensus 31 ~A~~lG~~LA~~G~-~lV~GGg~~GlM~a~a~ga~~~G------G~viGviP~ 76 (184)
.|+++.+.+...++ .||+-||. |..-.+.+|..... ...+||||.
T Consensus 156 hA~~la~~~~~~~~D~VV~vGGD-GTlnEVvNGL~~~~~~~~~~~~pLGiIPa 207 (481)
T PLN02958 156 HAKEVVRTMDLSKYDGIVCVSGD-GILVEVVNGLLEREDWKTAIKLPIGMVPA 207 (481)
T ss_pred HHHHHHHHhhhcCCCEEEEEcCC-CHHHHHHHHHhhCccccccccCceEEecC
Confidence 35566666666665 56677888 99999999987542 356999994
No 71
>PRK09004 FMN-binding protein MioC; Provisional
Probab=57.26 E-value=20 Score=27.91 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=25.8
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|++|.|+.+|..++. .+.|++|.+.+.+.|+.+.
T Consensus 1 M~~i~I~ygS~tGna---e~~A~~l~~~~~~~g~~~~ 34 (146)
T PRK09004 1 MADITLISGSTLGGA---EYVADHLAEKLEEAGFSTE 34 (146)
T ss_pred CCeEEEEEEcCchHH---HHHHHHHHHHHHHcCCceE
Confidence 567899998988743 3568888888888887654
No 72
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=57.05 E-value=76 Score=26.89 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=24.3
Q ss_pred eEEEcCCCcchhHHHHHHHHhcC-CeEEEEecC
Q 044681 45 DLVYGGGNVGLMGLISEEVHRGR-RHVLGIIPR 76 (184)
Q Consensus 45 ~lV~GGg~~GlM~a~a~ga~~~G-G~viGviP~ 76 (184)
.+|.-||. |-.-.+.++..... ...+|++|.
T Consensus 60 ~ivv~GGD-GTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGD-GTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCC-ChHHHHHHHHhcCCCCCcEEEEcC
Confidence 56677778 99999999987744 358999984
No 73
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=56.87 E-value=1.2e+02 Score=25.64 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=51.9
Q ss_pred EEEcCCCcchhHHH---HHHHHhcC-CeEEEEecCccccc-cccCCCCceEeecCCh--HHHHHHHHHhCCEEEEecCcc
Q 044681 46 LVYGGGNVGLMGLI---SEEVHRGR-RHVLGIIPRALMKK-ELTGVTLGEVKPVDHM--HQRKAEMARYADCFIVLPGGF 118 (184)
Q Consensus 46 lV~GGg~~GlM~a~---a~ga~~~G-G~viGviP~~~~~~-e~~~~~~~~~~~~~~~--~~Rk~~m~~~sDa~IvlPGG~ 118 (184)
+|.||.. +..+|+ +++|+..| |.|.=+.|+...+. ....+++ ++..-.. ...-.-..+..|++++=|| .
T Consensus 2 lvigGS~-~~~GA~~Laa~aAlr~GaGlV~~~~~~~~~~~~~~~~Pe~--m~~~~~~~~~~~~~~~~~~~~av~iGPG-l 77 (242)
T PF01256_consen 2 LVIGGSE-GYPGAAILAARAALRSGAGLVTLATPESIAPVIASYSPEA--MVSPLPSDEDVEILELLEKADAVVIGPG-L 77 (242)
T ss_dssp EEEE-BT-SSHHHHHHHHHHHHHTT-SEEEEEECGCCHHHHHHHTTTS--EEEETTHCCHHHHHHHHCH-SEEEE-TT--
T ss_pred EEEECCC-CCCCHHHHHHHHHHHHCCCcEEEEEcHHHHHHHHhCCcee--EEecccchhhhhhHhhhccCCEEEeecC-C
Confidence 5677766 777775 67777776 56665555433211 1111211 1111111 1122334578899998887 3
Q ss_pred ccHHHHHHHHHHHHhCCCCCCEEE-----------------EEEecCCHHHHHHHhhh
Q 044681 119 GTLEKLFEVTTWSQLGVHNKPVAI-----------------IMVSASNAKELVQKLED 159 (184)
Q Consensus 119 GTL~El~~~l~~~qlg~~~kPvvl-----------------~i~~~~~~~e~~~~l~~ 159 (184)
|+-++-.+.+.... ...+|+|+ .++++..+-|.-+.+..
T Consensus 78 g~~~~~~~~~~~~~--~~~~p~VlDADaL~~l~~~~~~~~~~~IlTPH~gE~~rL~~~ 133 (242)
T PF01256_consen 78 GRDEETEELLEELL--ESDKPLVLDADALNLLAENPKKRNAPVILTPHPGEFARLLGK 133 (242)
T ss_dssp SSSHHHHHHHHHHH--HHCSTEEEECHHHHCHHHCCCCSSSCEEEE-BHHHHHHHHTT
T ss_pred CCchhhHHHHHHHH--hhcceEEEehHHHHHHHhccccCCCCEEECCCHHHHHHHhCC
Confidence 55455333222211 12678777 34445566666665554
No 74
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=56.85 E-value=38 Score=27.41 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=34.9
Q ss_pred HHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhhc
Q 044681 103 EMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 103 ~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~~ 161 (184)
-+...||++|.-...-|.-.=+.|++.. ++|++. .++-.+|++++.+.+.+..
T Consensus 259 ~~~~~adi~i~ps~~e~~~~~~~Ea~~~------G~Pvi~s~~~~~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~ 327 (359)
T cd03808 259 ELLAAADVFVLPSYREGLPRVLLEAMAM------GRPVIATDVPGCREAVIDGVNGFLVPPGDAEALADAIERLI 327 (359)
T ss_pred HHHHhccEEEecCcccCcchHHHHHHHc------CCCEEEecCCCchhhhhcCcceEEECCCCHHHHHHHHHHHH
Confidence 4567899877544332333336666654 889988 3444567999999998854
No 75
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=56.59 E-value=32 Score=25.94 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH----CCCeEE-E--cCCC-cchhHHHHHHHHhcC
Q 044681 29 RKAAIDLGNELVS----KGLDLV-Y--GGGN-VGLMGLISEEVHRGR 67 (184)
Q Consensus 29 ~~~A~~lG~~LA~----~G~~lV-~--GGg~-~GlM~a~a~ga~~~G 67 (184)
.++|+.+|+.||+ .|+.-| + ||.. -|-+.|+++||.++|
T Consensus 60 ~~aA~~vG~lla~ra~~~gi~~vvfDrgg~~yhGrV~a~a~~are~G 106 (109)
T CHL00139 60 CDASKLVGQKLAKKSLKKGITKVVFDRGGKLYHGRIKALAEAAREAG 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCccchHHHHHHHHHHHhC
Confidence 3578888888887 465444 2 4432 489999999999987
No 76
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=56.44 E-value=17 Score=31.75 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=33.5
Q ss_pred CEEEEecCccccHHHHHHHHHHHHhCCCCCC-EEE-----------EEEecC-CHHHHHHHhhhh
Q 044681 109 DCFIVLPGGFGTLEKLFEVTTWSQLGVHNKP-VAI-----------IMVSAS-NAKELVQKLEDY 160 (184)
Q Consensus 109 Da~IvlPGG~GTL~El~~~l~~~qlg~~~kP-vvl-----------~i~~~~-~~~e~~~~l~~~ 160 (184)
.=.|+..||=||++|+...+.- ++.| +.+ .+..-. +++++++.|.+-
T Consensus 59 ~D~via~GGDGTv~evingl~~-----~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g 118 (301)
T COG1597 59 YDTVIAAGGDGTVNEVANGLAG-----TDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSG 118 (301)
T ss_pred CCEEEEecCcchHHHHHHHHhc-----CCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcC
Confidence 3456667999999999988754 3445 444 455556 499999999873
No 77
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=56.18 E-value=30 Score=30.59 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=27.1
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
..|+|||.-| .=||+|.+..|++.- .. .||||+
T Consensus 78 ~~dGiVVtHG-TDTmeeTA~~L~~~l-~~-~kPVVl 110 (323)
T cd00411 78 SYDGFVITHG-TDTMEETAYFLSLTL-EN-DKPVVL 110 (323)
T ss_pred hcCcEEEEcC-cccHHHHHHHHHHHh-cC-CCCEEE
Confidence 4799999875 789999999998743 33 899999
No 78
>PRK13059 putative lipid kinase; Reviewed
Probab=55.52 E-value=83 Score=27.00 Aligned_cols=37 Identities=16% Similarity=0.396 Sum_probs=26.5
Q ss_pred HHHCCC-eEEEcCCCcchhHHHHHHHHhcC-CeEEEEecC
Q 044681 39 LVSKGL-DLVYGGGNVGLMGLISEEVHRGR-RHVLGIIPR 76 (184)
Q Consensus 39 LA~~G~-~lV~GGg~~GlM~a~a~ga~~~G-G~viGviP~ 76 (184)
.++.++ .||.-||. |---.++.+..+.+ ...+||+|.
T Consensus 52 ~~~~~~d~vi~~GGD-GTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 52 DIDESYKYILIAGGD-GTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred HhhcCCCEEEEECCc-cHHHHHHHHHHhcCCCCcEEEECC
Confidence 344554 45567777 98888889888765 456999994
No 79
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=54.98 E-value=53 Score=28.56 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=43.8
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCcc
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRAL 78 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~ 78 (184)
.++++.|-|.|+ + ..+++++.||++|+.|+-=+...=-++++++.-.+..|.-+=++|-.+
T Consensus 5 ~~~~~lITGASs-G-------IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DL 65 (265)
T COG0300 5 KGKTALITGASS-G-------IGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADL 65 (265)
T ss_pred CCcEEEEECCCc-h-------HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcC
Confidence 345666666554 3 678888999999999998888766677777776666666666776544
No 80
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=54.75 E-value=28 Score=28.52 Aligned_cols=43 Identities=19% Similarity=0.079 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhCCEEEEecCc------cccHHHHHHHHHHHHhCCCCCCEEEEEE
Q 044681 97 MHQRKAEMARYADCFIVLPGG------FGTLEKLFEVTTWSQLGVHNKPVAIIMV 145 (184)
Q Consensus 97 ~~~Rk~~m~~~sDa~IvlPGG------~GTL~El~~~l~~~qlg~~~kPvvl~i~ 145 (184)
+.+=...+++.||++|+.-=+ .||.-|+-.+..+ +||++.+..
T Consensus 58 i~e~d~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~Al------gKPv~~~~~ 106 (172)
T COG3613 58 IYEADIKLIDQADIVLANLDPFRPDPDSGTAFELGYAIAL------GKPVYAYRK 106 (172)
T ss_pred HHHHHHHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHc------CCceEEEee
Confidence 344456677999999988655 6899999999987 899987443
No 81
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=54.54 E-value=73 Score=26.35 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=20.8
Q ss_pred HHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 103 EMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 103 ~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
......|++++ .+|.|+-+.+..+..... .++.|+++
T Consensus 73 ~~~~~~d~v~i-g~gl~~~~~~~~i~~~~~--~~~~pvVl 109 (254)
T cd01171 73 ELLERADAVVI-GPGLGRDEEAAEILEKAL--AKDKPLVL 109 (254)
T ss_pred hhhccCCEEEE-ecCCCCCHHHHHHHHHHH--hcCCCEEE
Confidence 34466788776 445887544444333222 23678877
No 82
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=54.42 E-value=1e+02 Score=24.01 Aligned_cols=116 Identities=9% Similarity=0.122 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHH
Q 044681 27 CYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMAR 106 (184)
Q Consensus 27 ~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~ 106 (184)
.|-.-..-+...|-.+||.+++-|-. =--+.+.+.|.+.+-..||+. .+.. . .+. .|.+=.+.+-+
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~-v~~e~~v~aa~~~~adiVglS--~l~~-----~---~~~---~~~~~~~~l~~ 78 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVL-SPQEEFIKAAIETKADAILVS--SLYG-----H---GEI---DCKGLRQKCDE 78 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEe--cccc-----c---CHH---HHHHHHHHHHH
Confidence 44344566677788899999999987 667888889999999999993 3211 0 011 12111122222
Q ss_pred h--CCEEEEecCccccHHHHHH--HHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhhhc
Q 044681 107 Y--ADCFIVLPGGFGTLEKLFE--VTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 107 ~--sDa~IvlPGG~GTL~El~~--~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~~~ 161 (184)
. .|..|+++|+....++=+. .-.+.++|... .+--.+++++++++|++..
T Consensus 79 ~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~-----vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 79 AGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDR-----VFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCE-----EECcCCCHHHHHHHHHHHh
Confidence 2 3666666665444332221 12334555321 1223468999999998754
No 83
>PRK13337 putative lipid kinase; Reviewed
Probab=54.41 E-value=39 Score=29.10 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=33.3
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------EEEecCCHHHHHHHhhh
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------IMVSASNAKELVQKLED 159 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------~i~~~~~~~e~~~~l~~ 159 (184)
.| .|+.-||=||++|+...+.- .+ +..|+.+ .+-...+++++++.+.+
T Consensus 58 ~d-~vvv~GGDGTl~~vv~gl~~--~~-~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~ 116 (304)
T PRK13337 58 FD-LVIAAGGDGTLNEVVNGIAE--KE-NRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIE 116 (304)
T ss_pred CC-EEEEEcCCCHHHHHHHHHhh--CC-CCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHc
Confidence 35 57788999999999987732 11 2346655 34445689998888875
No 84
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=54.35 E-value=17 Score=27.28 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=16.4
Q ss_pred EEEecCccccHHHHHHHHH
Q 044681 111 FIVLPGGFGTLEKLFEVTT 129 (184)
Q Consensus 111 ~IvlPGG~GTL~El~~~l~ 129 (184)
+|+.-||=||++|+...+.
T Consensus 52 ~vvv~GGDGTi~~vvn~l~ 70 (124)
T smart00046 52 RVLVCGGDGTVGWVLNALD 70 (124)
T ss_pred EEEEEccccHHHHHHHHHH
Confidence 6778999999999988773
No 85
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=54.27 E-value=1.1e+02 Score=26.38 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=30.7
Q ss_pred ChHHHHHHHHH-----hCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 96 HMHQRKAEMAR-----YADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 96 ~~~~Rk~~m~~-----~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
+-.+|-+-|.+ ..|+++..-||.|+. ++..-+.|.++..++|+++-
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~-rlL~~ld~~~~~~~pK~~iG 96 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYGAN-RLLPYLDYDLIRANPKIFVG 96 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH-HhhhhCCHHHHhhCCeEEEE
Confidence 44455544433 368999999999985 45555777777656666544
No 86
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=53.98 E-value=80 Score=22.67 Aligned_cols=55 Identities=25% Similarity=0.263 Sum_probs=33.5
Q ss_pred HHHHHHHhCCEEEEec-CccccHHHHHHHHHHHHhCCCCCCEEE--------------EEEecCCHHHHHHHhhhh
Q 044681 100 RKAEMARYADCFIVLP-GGFGTLEKLFEVTTWSQLGVHNKPVAI--------------IMVSASNAKELVQKLEDY 160 (184)
Q Consensus 100 Rk~~m~~~sDa~IvlP-GG~GTL~El~~~l~~~qlg~~~kPvvl--------------~i~~~~~~~e~~~~l~~~ 160 (184)
...-++..+|..|..- =+.++-.-+++.+.. ++|++. .+...+|++++.+.|.+.
T Consensus 63 e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~------G~pvi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 132 (135)
T PF13692_consen 63 ELPEILAAADVGLIPSRFNEGFPNKLLEAMAA------GKPVIASDNGAEGIVEEDGCGVLVANDPEELAEAIERL 132 (135)
T ss_dssp HHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCT------T--EEEEHHHCHCHS---SEEEE-TT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHh------CCCEEECCcchhhheeecCCeEEECCCHHHHHHHHHHH
Confidence 4555567799877632 134666778887754 889988 334488999999998875
No 87
>PRK08862 short chain dehydrogenase; Provisional
Probab=53.92 E-value=78 Score=25.79 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=33.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
+++.|.|+++ -..+++++.|+++|+.|+.-+....-.+.+.+...+.++.+..+
T Consensus 6 k~~lVtGas~--------GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~ 59 (227)
T PRK08862 6 SIILITSAGS--------VLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSF 59 (227)
T ss_pred eEEEEECCcc--------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEE
Confidence 5777888776 25677888888899988765544333333444444445554443
No 88
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=53.75 E-value=20 Score=29.71 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcC
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV-YGG 50 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV-~GG 50 (184)
.+++|++||||=.+...-+...|+++.+.+..--...+ ++.
T Consensus 1 ~~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~ 42 (197)
T COG1057 1 KMKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPV 42 (197)
T ss_pred CCceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCC
Confidence 36899999999877666778888888887766553333 444
No 89
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=53.58 E-value=93 Score=23.31 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhhc
Q 044681 98 HQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~~ 161 (184)
.+....+...||++|...---|.-.=+.|++.. ++|++. .++...|++++.+.|.++.
T Consensus 83 ~~~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~------g~pvI~~~~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 83 DDELDELYKSSDIFVSPSRNEGFGLSLLEAMAC------GCPVIASDIGGNNEIINDGVNGFLFDPNDIEELADAIEKLL 156 (172)
T ss_dssp HHHHHHHHHHTSEEEE-BSSBSS-HHHHHHHHT------T-EEEEESSTHHHHHSGTTTSEEEESTTSHHHHHHHHHHHH
T ss_pred ccccccccccceecccccccccccccccccccc------ccceeeccccCCceeeccccceEEeCCCCHHHHHHHHHHHH
Confidence 455667778899999875422222245566654 789988 5565678899999988764
No 90
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=53.50 E-value=2e+02 Score=27.04 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=64.7
Q ss_pred cccccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHC--CCeEEEcCCC-------cchhHHHHHHHHhcCCeEEEEec
Q 044681 5 KEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSK--GLDLVYGGGN-------VGLMGLISEEVHRGRRHVLGIIP 75 (184)
Q Consensus 5 ~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~--G~~lV~GGg~-------~GlM~a~a~ga~~~GG~viGviP 75 (184)
+.+....+++...|+-.....+ ......++-+.|.+. |..+++=|.- .-....+.++..+.+-++|--..
T Consensus 258 d~~rp~~p~v~~vGgi~~~~~~-~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~ 336 (507)
T PHA03392 258 DNNRPVPPSVQYLGGLHLHKKP-PQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYD 336 (507)
T ss_pred cCCCCCCCCeeeecccccCCCC-CCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3455666788888885432101 011233455566554 5566665542 12456777776667766654432
Q ss_pred CccccccccCCCCceEeecCChHHHHHHHH-HhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 76 RALMKKELTGVTLGEVKPVDHMHQRKAEMA-RYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 76 ~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~-~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
....+...+ ..+.+.+-+.. ..+|. .++++|| --||.||..|... +++|+++
T Consensus 337 ~~~~~~~~p----~Nv~i~~w~Pq-~~lL~hp~v~~fI-tHGG~~s~~Eal~---------~GvP~v~ 389 (507)
T PHA03392 337 GEVEAINLP----ANVLTQKWFPQ-RAVLKHKNVKAFV-TQGGVQSTDEAID---------ALVPMVG 389 (507)
T ss_pred CCcCcccCC----CceEEecCCCH-HHHhcCCCCCEEE-ecCCcccHHHHHH---------cCCCEEE
Confidence 211110111 23455555553 44553 2355554 5678999888543 6899988
No 91
>PRK05866 short chain dehydrogenase; Provisional
Probab=53.45 E-value=72 Score=27.02 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=34.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
++|.|.|+++ -..+++++.|+++|+.|+.-+....-.+.+.+...+.++.+..+
T Consensus 41 k~vlItGasg--------gIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~ 94 (293)
T PRK05866 41 KRILLTGASS--------GIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAV 94 (293)
T ss_pred CEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 6788888775 26777888888999998876655233333333333345555444
No 92
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=53.33 E-value=35 Score=30.41 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=27.9
Q ss_pred HhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 106 RYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 106 ~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
+..|+|||+-| .=||+|-+.+|++.--+ .||||+
T Consensus 76 ~~~dG~VVtHG-TDTme~TA~~Ls~~l~~--~kPVVl 109 (336)
T TIGR00519 76 DDYDGFVITHG-TDTMAYTAAALSFMLET--PKPVVF 109 (336)
T ss_pred hcCCeEEEccC-CchHHHHHHHHHHHcCC--CCCEEE
Confidence 35899999985 78999999999874323 899999
No 93
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=52.69 E-value=49 Score=25.95 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=43.4
Q ss_pred HhCCEEEEec----CccccHHHHHHHHHH--HHhCC-CCCCEEEEEEecCCHHHHHHHhhhh
Q 044681 106 RYADCFIVLP----GGFGTLEKLFEVTTW--SQLGV-HNKPVAIIMVSASNAKELVQKLEDY 160 (184)
Q Consensus 106 ~~sDa~IvlP----GG~GTL~El~~~l~~--~qlg~-~~kPvvl~i~~~~~~~e~~~~l~~~ 160 (184)
..-|++|+|+ |+.--.+-+....+. +++.+ +++||++.+..+++.+++++.-..+
T Consensus 58 ~~~DavI~LG~VIrG~T~H~e~v~~~v~~gl~~~sl~~~~PV~~GvLt~~~~eQa~~R~~~~ 119 (138)
T TIGR00114 58 GKYDAVIALGCVIRGGTPHFEYVADEAAKGIADLALDYDKPVIFGILTTGTIEQAIERAGDK 119 (138)
T ss_pred CCCCEEEEEeeEEeCCCchhHHHHHHHHHHHHHHHhhhCCCEEEEecCCCCHHHHHHHcccc
Confidence 4479999987 888887877776654 45564 5899999999999999999877643
No 94
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.66 E-value=97 Score=27.18 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=40.9
Q ss_pred cCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE-----------------------------------cCCCc
Q 044681 9 SRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY-----------------------------------GGGNV 53 (184)
Q Consensus 9 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~-----------------------------------GGg~~ 53 (184)
..|++|+|+.-.. ++...+.+.++.++|.++|+.++. =||.
T Consensus 3 ~~~~~i~ii~~~~---~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD- 78 (296)
T PRK04539 3 SPFHNIGIVTRPN---TPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGD- 78 (296)
T ss_pred CCCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCc-
Confidence 4578899996433 456667888888888766643332 2445
Q ss_pred chhHHHHHHHHhcCCeEEEEe
Q 044681 54 GLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 54 GlM~a~a~ga~~~GG~viGvi 74 (184)
|-|=.+++-+...+-.++||-
T Consensus 79 GT~L~aa~~~~~~~~PilGIN 99 (296)
T PRK04539 79 GTFLSVAREIAPRAVPIIGIN 99 (296)
T ss_pred HHHHHHHHHhcccCCCEEEEe
Confidence 777666666666666778873
No 95
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=52.50 E-value=45 Score=27.76 Aligned_cols=53 Identities=21% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE--------------EEEecCCHHHHHHHhhhhc
Q 044681 103 EMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI--------------IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 103 ~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl--------------~i~~~~~~~e~~~~l~~~~ 161 (184)
-+...||++|.-...-|.-.=++|+++. ++|++. .++..+|++++.+.+.++.
T Consensus 258 ~~~~~ad~~v~~s~~e~~~~~~~Ea~a~------G~PvI~~~~~~~~e~i~~~g~~~~~~~~~~~~~~i~~ll 324 (360)
T cd04951 258 AYYNAADLFVLSSAWEGFGLVVAEAMAC------ELPVVATDAGGVREVVGDSGLIVPISDPEALANKIDEIL 324 (360)
T ss_pred HHHHhhceEEecccccCCChHHHHHHHc------CCCEEEecCCChhhEecCCceEeCCCCHHHHHHHHHHHH
Confidence 4568899977655322222236677765 889888 4455689999999998874
No 96
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=52.39 E-value=75 Score=26.49 Aligned_cols=108 Identities=13% Similarity=0.061 Sum_probs=63.2
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE--EcCCCcchhHHHHHHHHhcCCeEEEEecCcccccccc---C
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV--YGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELT---G 85 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV--~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~---~ 85 (184)
.+.|.|+=+.+ .+.+.++++.|.+.|+.++ +=-.+ +..+++.+-..+.+...+|.= -....++. -
T Consensus 8 ~~liaVlr~~~-------~e~a~~~~~al~~~Gi~~iEit~~t~-~a~~~i~~l~~~~~~~~vGAG--TVl~~~~a~~a~ 77 (204)
T TIGR01182 8 AKIVPVIRIDD-------VDDALPLAKALIEGGLRVLEVTLRTP-VALDAIRLLRKEVPDALIGAG--TVLNPEQLRQAV 77 (204)
T ss_pred CCEEEEEecCC-------HHHHHHHHHHHHHcCCCEEEEeCCCc-cHHHHHHHHHHHCCCCEEEEE--eCCCHHHHHHHH
Confidence 35666665432 2578888999999988776 32335 777776666656666778871 11111111 1
Q ss_pred CCCceEeecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHH
Q 044681 86 VTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTW 130 (184)
Q Consensus 86 ~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~ 130 (184)
+-=.+.++.+.+.. ..+-......+..+| |.-|..|++.++.+
T Consensus 78 ~aGA~FivsP~~~~-~v~~~~~~~~i~~iP-G~~TptEi~~A~~~ 120 (204)
T TIGR01182 78 DAGAQFIVSPGLTP-ELAKHAQDHGIPIIP-GVATPSEIMLALEL 120 (204)
T ss_pred HcCCCEEECCCCCH-HHHHHHHHcCCcEEC-CCCCHHHHHHHHHC
Confidence 11124566666632 222222233567788 67899999998865
No 97
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=52.18 E-value=36 Score=31.54 Aligned_cols=85 Identities=19% Similarity=0.272 Sum_probs=52.7
Q ss_pred CeEEEcCCCcchhHHHHHHHHh--------------------cCCeEEEEecCccccccccCCCCceEeecCChHHHHHH
Q 044681 44 LDLVYGGGNVGLMGLISEEVHR--------------------GRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAE 103 (184)
Q Consensus 44 ~~lV~GGg~~GlM~a~a~ga~~--------------------~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~ 103 (184)
|.+-+|-|+ |+.+-..+-+.+ .+|+|.||--..+.|.....-..+.-.+..+|.
T Consensus 141 FHiTWGTGP-gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~grvtGv~GdVLeps~v~RG~~SSR~~~GdFe----- 214 (552)
T COG3573 141 FHITWGTGP-GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTGGRVTGVRGDVLEPSDVERGQPSSREVVGDFE----- 214 (552)
T ss_pred eEEeecCCc-chhhHHHHHHHHHHhCCceEEEeeeeccceEeeCCeEeeecccccCCCccccCCCccceeecceE-----
Confidence 567789999 999988877776 256777775433333222111111222334443
Q ss_pred HHHhCCEEEEecCccccHHHHHHH-HHHHHhCCC
Q 044681 104 MARYADCFIVLPGGFGTLEKLFEV-TTWSQLGVH 136 (184)
Q Consensus 104 m~~~sDa~IvlPGG~GTL~El~~~-l~~~qlg~~ 136 (184)
-++.++|+-.||+|-=.|+.-- |--..||..
T Consensus 215 --f~A~aviv~SGGIGGnhelVRrnWP~eRlG~~ 246 (552)
T COG3573 215 --FSASAVIVASGGIGGNHELVRRNWPTERLGRA 246 (552)
T ss_pred --EeeeeEEEecCCcCCCHHHHHhcCchhhcCCC
Confidence 4588999999999998888753 333456643
No 98
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=51.61 E-value=30 Score=30.48 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYG 49 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~G 49 (184)
|.+|+|++|....+.+.=...|+.+.+.|.+.||.++.-
T Consensus 1 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i 39 (347)
T PRK14572 1 MAKIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPI 39 (347)
T ss_pred CcEEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEE
Confidence 457888777776667777899999999999999998643
No 99
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=51.22 E-value=86 Score=25.15 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCEEEEecC--ccccHHHHHHHHHHHHhCCCCCCEEE-----------------EEEecCCHHHHHHHhh
Q 044681 98 HQRKAEMARYADCFIVLPG--GFGTLEKLFEVTTWSQLGVHNKPVAI-----------------IMVSASNAKELVQKLE 158 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlPG--G~GTL~El~~~l~~~qlg~~~kPvvl-----------------~i~~~~~~~e~~~~l~ 158 (184)
.+...-+...||++|.-.. |+|+ =++|+++. ++|++. .++-..|++++.+.|.
T Consensus 243 ~~~~~~~~~~ad~~i~ps~~e~~~~--~~~Ea~a~------G~Pvi~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~ 314 (348)
T cd03820 243 TKNIEEYYAKASIFVLTSRFEGFPM--VLLEAMAF------GLPVISFDCPTGPSEIIEDGVNGLLVPNGDVEALAEALL 314 (348)
T ss_pred cchHHHHHHhCCEEEeCccccccCH--HHHHHHHc------CCCEEEecCCCchHhhhccCcceEEeCCCCHHHHHHHHH
Confidence 3444556678998775432 3332 26666654 788887 3344467899999999
Q ss_pred hhcC
Q 044681 159 DYEP 162 (184)
Q Consensus 159 ~~~~ 162 (184)
+...
T Consensus 315 ~ll~ 318 (348)
T cd03820 315 RLME 318 (348)
T ss_pred HHHc
Confidence 8743
No 100
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=50.69 E-value=80 Score=26.73 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCEEEEec-CccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhh
Q 044681 98 HQRKAEMARYADCFIVLP-GGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDY 160 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlP-GG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~ 160 (184)
.+...-+...||++|... -|+|.. +.|+++. ++||+. .++-.+|++++.+.|..+
T Consensus 252 ~~~~~~~~~~ad~~v~ps~e~~g~~--~~Eama~------G~Pvi~~~~~~~~e~i~~~~~G~~~~~~~~~~la~~i~~l 323 (351)
T cd03804 252 DEELRDLYARARAFLFPAEEDFGIV--PVEAMAS------GTPVIAYGKGGALETVIDGVTGILFEEQTVESLAAAVERF 323 (351)
T ss_pred HHHHHHHHHhCCEEEECCcCCCCch--HHHHHHc------CCCEEEeCCCCCcceeeCCCCEEEeCCCCHHHHHHHHHHH
Confidence 344556778899988543 566665 4666654 889987 334457899999999886
Q ss_pred cCC
Q 044681 161 EPS 163 (184)
Q Consensus 161 ~~~ 163 (184)
...
T Consensus 324 ~~~ 326 (351)
T cd03804 324 EKN 326 (351)
T ss_pred HhC
Confidence 543
No 101
>PRK13057 putative lipid kinase; Reviewed
Probab=50.24 E-value=36 Score=28.98 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecC
Q 044681 31 AAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPR 76 (184)
Q Consensus 31 ~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~ 76 (184)
.+.++.+.+.+.--.|+..||. |-.-.+.++.... +..+||+|.
T Consensus 39 ~a~~~~~~~~~~~d~iiv~GGD-GTv~~v~~~l~~~-~~~lgiiP~ 82 (287)
T PRK13057 39 DLSEVIEAYADGVDLVIVGGGD-GTLNAAAPALVET-GLPLGILPL 82 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECch-HHHHHHHHHHhcC-CCcEEEECC
Confidence 4445555533332356677778 9999999998765 467999994
No 102
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=50.07 E-value=52 Score=26.55 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=40.6
Q ss_pred HhCCEEEEec----CccccHHHHHHHHHH--HHhCC-CCCCEEEEEEecCCHHHHHHH
Q 044681 106 RYADCFIVLP----GGFGTLEKLFEVTTW--SQLGV-HNKPVAIIMVSASNAKELVQK 156 (184)
Q Consensus 106 ~~sDa~IvlP----GG~GTL~El~~~l~~--~qlg~-~~kPvvl~i~~~~~~~e~~~~ 156 (184)
..=|++|+|+ |+.--.|-+....+. +++.+ +++||++.+..+++.++..+.
T Consensus 68 ~~yDaiIaLG~VIrGeT~H~e~V~~~v~~gl~~vsl~~~~PV~fGVLT~~~~eqA~~r 125 (158)
T PRK12419 68 GRYAAIVAAALVVDGGIYRHEFVAQAVIDGLMRVQLDTEVPVFSVVLTPHHFHESEEH 125 (158)
T ss_pred CCCCEEEEEEEEEcCCCchhHHHHHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHH
Confidence 3468999887 988888888877664 46664 699999999999999976664
No 103
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=50.04 E-value=41 Score=27.47 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCc--ccc---ccccCCCCc-eEe---ecCChHHHHHHHH
Q 044681 35 LGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRA--LMK---KELTGVTLG-EVK---PVDHMHQRKAEMA 105 (184)
Q Consensus 35 lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~--~~~---~e~~~~~~~-~~~---~~~~~~~Rk~~m~ 105 (184)
|-+.+...+..|-||||- +|-.-++.++...|.||-+--+. +.. .+...+.+. .-. +-+-|.+|+.+..
T Consensus 65 l~~l~~~~~~ViaTGGG~--v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~ 142 (172)
T COG0703 65 LKELLEEDNAVIATGGGA--VLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYR 142 (172)
T ss_pred HHHHhhcCCeEEECCCcc--ccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHH
Confidence 344444455777778775 78788899999888888773211 111 011111111 111 2356689999998
Q ss_pred HhCCEEEEecCcc
Q 044681 106 RYADCFIVLPGGF 118 (184)
Q Consensus 106 ~~sDa~IvlPGG~ 118 (184)
+.||.++--..-.
T Consensus 143 e~a~~~~~~~~~~ 155 (172)
T COG0703 143 EVADFIIDTDDRS 155 (172)
T ss_pred HhCcEEecCCCCc
Confidence 8877776555544
No 104
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=49.90 E-value=10 Score=38.64 Aligned_cols=50 Identities=26% Similarity=0.342 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhc-----------CCeEEEEecCccccc
Q 044681 30 KAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRG-----------RRHVLGIIPRALMKK 81 (184)
Q Consensus 30 ~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~-----------GG~viGviP~~~~~~ 81 (184)
..=.+|+|.|..+-+.||.||| |.=|++.-|+++| ||.+||-.-..++..
T Consensus 826 sDFsRLAR~LtGnaIgLVLGGG--GARG~ahiGvl~ALeE~GIPvD~VGGTSIGafiGaLYA~ 886 (1158)
T KOG2968|consen 826 SDFSRLARILTGNAIGLVLGGG--GARGAAHIGVLQALEEAGIPVDMVGGTSIGAFIGALYAE 886 (1158)
T ss_pred chHHHHHHHHhCCeEEEEecCc--chhhhhHHHHHHHHHHcCCCeeeeccccHHHhhhhhhhc
Confidence 3445688889999999999997 6777887777763 788888765555543
No 105
>PRK12361 hypothetical protein; Provisional
Probab=49.71 E-value=35 Score=32.06 Aligned_cols=43 Identities=28% Similarity=0.405 Sum_probs=30.0
Q ss_pred HHHHHHHHHHCCC-eEEEcCCCcchhHHHHHHHHhcCCeEEEEecC
Q 044681 32 AIDLGNELVSKGL-DLVYGGGNVGLMGLISEEVHRGRRHVLGIIPR 76 (184)
Q Consensus 32 A~~lG~~LA~~G~-~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~ 76 (184)
+.++.+..++.|+ .||..||. |--..+..+.... +..+||+|.
T Consensus 286 a~~la~~~~~~~~d~Viv~GGD-GTl~ev~~~l~~~-~~~lgiiP~ 329 (547)
T PRK12361 286 AEALAKQARKAGADIVIACGGD-GTVTEVASELVNT-DITLGIIPL 329 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCC-cHHHHHHHHHhcC-CCCEEEecC
Confidence 4556666555665 55567777 9888888888754 467999994
No 106
>PRK13055 putative lipid kinase; Reviewed
Probab=49.69 E-value=27 Score=30.75 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=31.5
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------EEEecC-CHHHHHHHhhh
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------IMVSAS-NAKELVQKLED 159 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------~i~~~~-~~~e~~~~l~~ 159 (184)
.|. |+.-||=||++|+...+.- .+ .+.|+.+ .+-... +++++++.|.+
T Consensus 60 ~d~-vvv~GGDGTl~evvngl~~--~~-~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~ 119 (334)
T PRK13055 60 FDL-IIAAGGDGTINEVVNGIAP--LE-KRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILK 119 (334)
T ss_pred CCE-EEEECCCCHHHHHHHHHhh--cC-CCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHc
Confidence 354 5566999999999987732 11 2345555 344455 79998888875
No 107
>PRK00208 thiG thiazole synthase; Reviewed
Probab=49.37 E-value=1.8e+02 Score=25.30 Aligned_cols=126 Identities=13% Similarity=0.199 Sum_probs=79.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCce
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV-YGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGE 90 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV-~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~ 90 (184)
-++=|++.......+.. ..-+-.+.|.+.|+.++ |-.-. + ..++...+.|...+ .| .-.+.. .+..+
T Consensus 94 iKlEVi~d~~~llpd~~--~tv~aa~~L~~~Gf~vlpyc~~d--~--~~ak~l~~~G~~~v--mP-lg~pIG-sg~gi-- 161 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPI--ETLKAAEILVKEGFVVLPYCTDD--P--VLAKRLEEAGCAAV--MP-LGAPIG-SGLGL-- 161 (250)
T ss_pred EEEEEecCCCCCCcCHH--HHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CC-CCcCCC-CCCCC--
Confidence 45667776664433332 44555666788999999 76654 2 34455566677666 33 111111 01111
Q ss_pred EeecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE--EEEecCCHHHHHHHhhh
Q 044681 91 VKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI--IMVSASNAKELVQKLED 159 (184)
Q Consensus 91 ~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl--~i~~~~~~~e~~~~l~~ 159 (184)
.+ .+..+.+.+..+.-|+..||++|.++...++. +|.+ -|++ .|..++||...-+.+.+
T Consensus 162 ----~~-~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame---lGAd--gVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 162 ----LN-PYNLRIIIEQADVPVIVDAGIGTPSDAAQAME---LGAD--AVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred ----CC-HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH---cCCC--EEEEChHhhCCCCHHHHHHHHHH
Confidence 11 44466777777889999999999999999885 4533 2333 55677899998888776
No 108
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=49.08 E-value=23 Score=26.39 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=20.1
Q ss_pred HHHhCCE--EEEecCccccHHHHHHHHH
Q 044681 104 MARYADC--FIVLPGGFGTLEKLFEVTT 129 (184)
Q Consensus 104 m~~~sDa--~IvlPGG~GTL~El~~~l~ 129 (184)
+....+. .|+.-||=||++|+...+.
T Consensus 48 ~~~~~~~~~~ivv~GGDGTl~~vv~~l~ 75 (130)
T PF00781_consen 48 ILALDDYPDVIVVVGGDGTLNEVVNGLM 75 (130)
T ss_dssp HHHHTTS-SEEEEEESHHHHHHHHHHHC
T ss_pred HHhhccCccEEEEEcCccHHHHHHHHHh
Confidence 4455554 8888899999999988773
No 109
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=48.89 E-value=61 Score=28.36 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=72.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEV 91 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~ 91 (184)
-++=|++-.+.-..+++ ..-+-.+.|++.||.|+-=-.+ -=.+|+--.+.|.. -|+|=. .|.. .+..+
T Consensus 108 IKLEVi~D~~~LlPD~~--etl~Aae~Lv~eGF~VlPY~~~---D~v~a~rLed~Gc~--aVMPlg-sPIG-Sg~Gl--- 175 (267)
T CHL00162 108 VKLEVISDPKYLLPDPI--GTLKAAEFLVKKGFTVLPYINA---DPMLAKHLEDIGCA--TVMPLG-SPIG-SGQGL--- 175 (267)
T ss_pred EEEEEeCCCcccCCChH--HHHHHHHHHHHCCCEEeecCCC---CHHHHHHHHHcCCe--EEeecc-Cccc-CCCCC---
Confidence 35556665543322222 2333344556777777622222 23456666667764 344411 1110 00000
Q ss_pred eecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE--EEEecCCHHHHHHHhhh
Q 044681 92 KPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI--IMVSASNAKELVQKLED 159 (184)
Q Consensus 92 ~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl--~i~~~~~~~e~~~~l~~ 159 (184)
.-..--+++.+.++.-|++.+|+||-+....++.+ |... |.+ .|..++||.+..+.++.
T Consensus 176 ----~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmEl---GaDg--VL~nSaIakA~dP~~mA~a~~~ 236 (267)
T CHL00162 176 ----QNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMEL---GASG--VLLNTAVAQAKNPEQMAKAMKL 236 (267)
T ss_pred ----CCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHHc---CCCE--EeecceeecCCCHHHHHHHHHH
Confidence 01233567888999999999999999999988754 4321 222 56678999999888875
No 110
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=48.79 E-value=33 Score=28.22 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCCCC-hHHHHHHHHHHHHHHHCCCeE
Q 044681 11 FKRVCVFCGSSPDYK-YCYRKAAIDLGNELVSKGLDL 46 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~-~~~~~~A~~lG~~LA~~G~~l 46 (184)
|++|+|+|....+.. --+...+++|+..|+++|+.+
T Consensus 1 mkkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v 37 (185)
T PF09314_consen 1 MKKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDV 37 (185)
T ss_pred CceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceE
Confidence 789999998765432 247889999999999988863
No 111
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=48.73 E-value=50 Score=29.49 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=32.1
Q ss_pred HHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEE
Q 044681 34 DLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIV 113 (184)
Q Consensus 34 ~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Iv 113 (184)
+.-++|.++|+.+++.||+ |+- +.+.++...|| +-++-.|+..-+-.-.-.||.+|+
T Consensus 175 ~~Ik~L~~~g~vVI~~GGG-GIP------Vv~~~~~~~GV----------------eAVIDKDlasalLA~~i~AD~liI 231 (312)
T COG0549 175 EAIKALLESGHVVIAAGGG-GIP------VVEEGAGLQGV----------------EAVIDKDLASALLAEQIDADLLII 231 (312)
T ss_pred HHHHHHHhCCCEEEEeCCC-Ccc------eEecCCCccee----------------eEEEccHHHHHHHHHHhcCCEEEE
Confidence 3456677788887776666 543 11212113333 334455664333222344888888
Q ss_pred ecCc
Q 044681 114 LPGG 117 (184)
Q Consensus 114 lPGG 117 (184)
|-.-
T Consensus 232 LTdV 235 (312)
T COG0549 232 LTDV 235 (312)
T ss_pred Eecc
Confidence 8653
No 112
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=48.16 E-value=1.5e+02 Score=26.90 Aligned_cols=88 Identities=20% Similarity=0.218 Sum_probs=51.2
Q ss_pred HHHCCCeEEEcCCCcc----hhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEEe
Q 044681 39 LVSKGLDLVYGGGNVG----LMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVL 114 (184)
Q Consensus 39 LA~~G~~lV~GGg~~G----lM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Ivl 114 (184)
.+.+....++=|.. + +-+.+.+...+.+.++|=-..+. +.. ..+-.....+.+... ...++.+||+|| -
T Consensus 234 ~~d~~~vyvslGt~-~~~~~l~~~~~~a~~~l~~~vi~~~~~~--~~~-~~~~p~n~~v~~~~p--~~~~l~~ad~vI-~ 306 (406)
T COG1819 234 PADRPIVYVSLGTV-GNAVELLAIVLEALADLDVRVIVSLGGA--RDT-LVNVPDNVIVADYVP--QLELLPRADAVI-H 306 (406)
T ss_pred cCCCCeEEEEcCCc-ccHHHHHHHHHHHHhcCCcEEEEecccc--ccc-cccCCCceEEecCCC--HHHHhhhcCEEE-e
Confidence 33355555544443 5 45566677777888776655431 111 111112244444443 334778999875 6
Q ss_pred cCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 115 PGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 115 PGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.||.||+.|... +++|+++
T Consensus 307 hGG~gtt~eaL~---------~gvP~vv 325 (406)
T COG1819 307 HGGAGTTSEALY---------AGVPLVV 325 (406)
T ss_pred cCCcchHHHHHH---------cCCCEEE
Confidence 899999887442 5899998
No 113
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=48.16 E-value=1.3e+02 Score=27.96 Aligned_cols=103 Identities=18% Similarity=0.260 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHH-----CCCeEEEcCCCcc---hhHHHHHHHHhcCC--eEEEEecCccccccccCCCCceEeecCChHH
Q 044681 30 KAAIDLGNELVS-----KGLDLVYGGGNVG---LMGLISEEVHRGRR--HVLGIIPRALMKKELTGVTLGEVKPVDHMHQ 99 (184)
Q Consensus 30 ~~A~~lG~~LA~-----~G~~lV~GGg~~G---lM~a~a~ga~~~GG--~viGviP~~~~~~e~~~~~~~~~~~~~~~~~ 99 (184)
+.|..++..+++ .+...+|||-+.| ||.|++..+.+.+- +++.+..+.+.. .+..-..-+.|.+
T Consensus 96 ~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~------~~v~a~~~~~~~~ 169 (408)
T COG0593 96 RLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN------DFVKALRDNEMEK 169 (408)
T ss_pred HHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH------HHHHHHHhhhHHH
Confidence 567777777777 4667778775545 99999999999876 666664332210 0000001123322
Q ss_pred HHHHHHHhCCEEEE-----ecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 100 RKAEMARYADCFIV-----LPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 100 Rk~~m~~~sDa~Iv-----lPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
=|... +.|.+++ +.|.-.|-+|+|..+.. +...+|-+++
T Consensus 170 Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~--l~~~~kqIvl 213 (408)
T COG0593 170 FKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNA--LLENGKQIVL 213 (408)
T ss_pred HHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHH--HHhcCCEEEE
Confidence 22222 6666664 67888999999997754 3334554444
No 114
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=48.08 E-value=1.9e+02 Score=25.15 Aligned_cols=126 Identities=13% Similarity=0.196 Sum_probs=77.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCce
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV-YGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGE 90 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV-~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~ 90 (184)
-++=|++..+.-..+.. ..-+-.+.|.+.|+.++ |-.-. + ..++...+.|...+ .| .-.+.. .+..+
T Consensus 94 iKlEVi~d~~~Llpd~~--~tv~aa~~L~~~Gf~vlpyc~dd--~--~~ar~l~~~G~~~v--mP-lg~pIG-sg~Gi-- 161 (248)
T cd04728 94 IKLEVIGDDKTLLPDPI--ETLKAAEILVKEGFTVLPYCTDD--P--VLAKRLEDAGCAAV--MP-LGSPIG-SGQGL-- 161 (248)
T ss_pred EEEEEecCccccccCHH--HHHHHHHHHHHCCCEEEEEeCCC--H--HHHHHHHHcCCCEe--CC-CCcCCC-CCCCC--
Confidence 35566776553333332 34455666788999999 76654 3 34555666777665 33 111111 11111
Q ss_pred EeecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE--EEEecCCHHHHHHHhhh
Q 044681 91 VKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI--IMVSASNAKELVQKLED 159 (184)
Q Consensus 91 ~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl--~i~~~~~~~e~~~~l~~ 159 (184)
.+ .+.-+.+.+..+.-|+..||++|.++...++. +|.+ -|++ .|..++||....+.+..
T Consensus 162 ----~~-~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame---lGAd--gVlV~SAIt~a~dP~~ma~af~~ 222 (248)
T cd04728 162 ----LN-PYNLRIIIERADVPVIVDAGIGTPSDAAQAME---LGAD--AVLLNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred ----CC-HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH---cCCC--EEEEChHhcCCCCHHHHHHHHHH
Confidence 11 34444666768899999999999999998885 4543 2333 55667889998888776
No 115
>PRK07775 short chain dehydrogenase; Provisional
Probab=47.84 E-value=1e+02 Score=25.52 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=26.8
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
++.++++.|.|+++ -..+.+.+.|+++|+.++.-..
T Consensus 7 ~~~~~~vlVtGa~g--------~iG~~la~~L~~~G~~V~~~~r 42 (274)
T PRK07775 7 HPDRRPALVAGASS--------GIGAATAIELAAAGFPVALGAR 42 (274)
T ss_pred CCCCCEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEeC
Confidence 45567899999875 2567788888899998865443
No 116
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=47.67 E-value=72 Score=26.61 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=36.0
Q ss_pred HHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE---------------EEEecCCHHHHHHHhhhhcC
Q 044681 101 KAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI---------------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 101 k~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl---------------~i~~~~~~~e~~~~l~~~~~ 162 (184)
..-+...||++|.-.---|.-.=++|+++. ++|||. .+...++++++.+.|.+...
T Consensus 260 ~~~~~~~adi~v~ps~~E~~~~~~lEAma~------G~PvI~s~~~~~~~~i~~~~~~~~~~~~~~~~a~~i~~l~~ 330 (358)
T cd03812 260 VPELLQAMDVFLFPSLYEGLPLVLIEAQAS------GLPCILSDTITKEVDLTDLVKFLSLDESPEIWAEEILKLKS 330 (358)
T ss_pred HHHHHHhcCEEEecccccCCCHHHHHHHHh------CCCEEEEcCCchhhhhccCccEEeCCCCHHHHHHHHHHHHh
Confidence 334668899887543211222336677765 889988 44445678999999988653
No 117
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=47.66 E-value=45 Score=24.19 Aligned_cols=32 Identities=19% Similarity=0.133 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCEEEEecC---ccccHHHHHHHHHH
Q 044681 99 QRKAEMARYADCFIVLPG---GFGTLEKLFEVTTW 130 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlPG---G~GTL~El~~~l~~ 130 (184)
.+-..|+..||+++.||| .-|..-|...+-.+
T Consensus 51 ~~~l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~l 85 (92)
T PF14359_consen 51 RICLAMLSDCDAIYMLPGWENSRGARLEHELAKKL 85 (92)
T ss_pred HHHHHHHHhCCEEEEcCCcccCcchHHHHHHHHHC
Confidence 344556668999999998 67889998887754
No 118
>PRK12359 flavodoxin FldB; Provisional
Probab=47.60 E-value=49 Score=26.67 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=12.0
Q ss_pred HHHHHHHHhcCCeEEEEecCcc
Q 044681 57 GLISEEVHRGRRHVLGIIPRAL 78 (184)
Q Consensus 57 ~a~a~ga~~~GG~viGviP~~~ 78 (184)
+...+-..+.|+.++|-.|..-
T Consensus 102 ~~l~~~l~~~Ga~ivG~~~~~g 123 (172)
T PRK12359 102 GMLHDKLAPKGVKFVGYWPTEG 123 (172)
T ss_pred HHHHHHHHhCCCeEEeeEeCCC
Confidence 3444444456666666665443
No 119
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=47.59 E-value=1.7e+02 Score=25.51 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=53.2
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEe
Q 044681 13 RVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVK 92 (184)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~ 92 (184)
+|+|+..|+...+ .+.+.-.+.-+.|.+.|+.++.|-.- ....+ .
T Consensus 2 ~I~ivAPS~~~~~-~~~~~~~~~~~~L~~~G~~v~~~~~~-----------~~~~~-----------------------~ 46 (308)
T cd07062 2 TIAVVSPSSGIPG-ELPHRLERAKKRLENLGFEVVEGPNA-----------LKGDK-----------------------Y 46 (308)
T ss_pred eEEEEeCCCCCcc-cCHHHHHHHHHHHHhCCCEEEEeccc-----------ccccc-----------------------c
Confidence 6888888876432 11122223333466779988876432 01000 1
Q ss_pred ecCChHHHHHHHHHh-----CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 93 PVDHMHQRKAEMARY-----ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 93 ~~~~~~~Rk~~m~~~-----sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
+..+-.+|-.-|.+. .||++..-||+|+. +|..-+.+..+..++|+++-
T Consensus 47 ~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~-rlL~~lD~~~i~~~PK~fiG 100 (308)
T cd07062 47 LSASPEERAEELMAAFADPSIKAIIPTIGGDDSN-ELLPYLDYELIKKNPKIFIG 100 (308)
T ss_pred ccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh-hhhhhcCHHHHhhCCCEEEe
Confidence 222334444333332 48999999999984 46666777777666665544
No 120
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=47.55 E-value=1.3e+02 Score=23.26 Aligned_cols=113 Identities=11% Similarity=0.144 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHH
Q 044681 27 CYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMAR 106 (184)
Q Consensus 27 ~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~ 106 (184)
.+-.-..-++..|-.+||.+++-|-. =--+.+.+.|.+.+-.+||+. .+.. .. + ..|.+=...+-+
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~-v~~e~~v~aa~~~~adiVglS--~L~t-----~~---~---~~~~~~~~~l~~ 76 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVL-SPQEEFIDAAIETDADAILVS--SLYG-----HG---E---IDCKGLREKCDE 76 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEe--cccc-----CC---H---HHHHHHHHHHHH
Confidence 44334455666788899999999987 566888889999999999993 2211 00 1 112111122222
Q ss_pred h--CCEEEEecCccccHHHHH--HHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhh
Q 044681 107 Y--ADCFIVLPGGFGTLEKLF--EVTTWSQLGVHNKPVAIIMVSASNAKELVQKLE 158 (184)
Q Consensus 107 ~--sDa~IvlPGG~GTL~El~--~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~ 158 (184)
. .|..|+++|......+=+ +.-.+.++|... .+--.++++++++.|+
T Consensus 77 ~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~-----vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 77 AGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDR-----VFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCE-----EECcCCCHHHHHHHHh
Confidence 2 375666666655443333 223455666421 1122357788777765
No 121
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=47.28 E-value=1.5e+02 Score=24.65 Aligned_cols=91 Identities=19% Similarity=0.187 Sum_probs=49.1
Q ss_pred EEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEee-cCCh--HHHHHHHHHhCCEEEEecCccccHH
Q 044681 46 LVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKP-VDHM--HQRKAEMARYADCFIVLPGGFGTLE 122 (184)
Q Consensus 46 lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~-~~~~--~~Rk~~m~~~sDa~IvlPGG~GTL~ 122 (184)
++.|+|+.| ..+|+...+.|-.|+.|--+.....+...+.+....+ .+.. ..=+..=++.+|++|+.-|- +
T Consensus 4 iIiG~G~vG--~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~----d 77 (225)
T COG0569 4 IIIGAGRVG--RSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN----D 77 (225)
T ss_pred EEECCcHHH--HHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC----C
Confidence 566777744 4667777778888888864433222222322333333 2222 22222225678999998764 3
Q ss_pred HHHHHHHHHHhCCCCCCEEE
Q 044681 123 KLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 123 El~~~l~~~qlg~~~kPvvl 142 (184)
|.-.+++...+...+.|-++
T Consensus 78 ~~N~i~~~la~~~~gv~~vi 97 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVI 97 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEE
Confidence 55555555444434556555
No 122
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.94 E-value=1.2e+02 Score=26.49 Aligned_cols=60 Identities=22% Similarity=0.336 Sum_probs=35.8
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe------------------------------EEEcCCCcchhHHH
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLD------------------------------LVYGGGNVGLMGLI 59 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~------------------------------lV~GGg~~GlM~a~ 59 (184)
.|++|+|+.-.. .+.-.+.++++.++|.++|+. +++=||. |-+--+
T Consensus 3 ~~~~v~iv~~~~---k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-Gt~l~~ 78 (295)
T PRK01231 3 SFRNIGLIGRLG---SSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGD-GSLLGA 78 (295)
T ss_pred CCCEEEEEecCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCc-HHHHHH
Confidence 467899996433 344556677777766555433 3444556 755555
Q ss_pred HHHHHhcCCeEEEE
Q 044681 60 SEEVHRGRRHVLGI 73 (184)
Q Consensus 60 a~ga~~~GG~viGv 73 (184)
++.+...+-.++||
T Consensus 79 ~~~~~~~~~Pvlgi 92 (295)
T PRK01231 79 ARALARHNVPVLGI 92 (295)
T ss_pred HHHhcCCCCCEEEE
Confidence 55555556677777
No 123
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=46.90 E-value=43 Score=27.47 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=25.1
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
..++|+|.|+|++. ...+.+.+.|.++|+.|+.-.
T Consensus 14 ~~~~~~ilItGasG--------~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 14 NVKTKTVFVAGATG--------RTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred cccCCeEEEECCCc--------HHHHHHHHHHHhCCCEEEEEe
Confidence 34467899999876 366777777788888876433
No 124
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=46.90 E-value=96 Score=25.53 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCEEEEec--C--cc-ccHHHHHHHHHHHHhCCCCCCEEE---------------EEEecCCHHHHHHHhh
Q 044681 99 QRKAEMARYADCFIVLP--G--GF-GTLEKLFEVTTWSQLGVHNKPVAI---------------IMVSASNAKELVQKLE 158 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlP--G--G~-GTL~El~~~l~~~qlg~~~kPvvl---------------~i~~~~~~~e~~~~l~ 158 (184)
+...-++..||++|.-. . |+ ++ +.|++++ ++||+. .++-.+|++++.+.|.
T Consensus 259 ~~~~~~~~~ad~~v~ps~~e~~~~~~~---~~Ea~a~------G~PvI~~~~~~~~~i~~~~~g~~~~~~d~~~~~~~l~ 329 (366)
T cd03822 259 EELPELFSAADVVVLPYRSADQTQSGV---LAYAIGF------GKPVISTPVGHAEEVLDGGTGLLVPPGDPAALAEAIR 329 (366)
T ss_pred HHHHHHHhhcCEEEecccccccccchH---HHHHHHc------CCCEEecCCCChheeeeCCCcEEEcCCCHHHHHHHHH
Confidence 44555668899987532 1 33 24 4455554 788887 3444578999999998
Q ss_pred hhcC
Q 044681 159 DYEP 162 (184)
Q Consensus 159 ~~~~ 162 (184)
++..
T Consensus 330 ~l~~ 333 (366)
T cd03822 330 RLLA 333 (366)
T ss_pred HHHc
Confidence 8654
No 125
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.64 E-value=1.4e+02 Score=26.17 Aligned_cols=62 Identities=24% Similarity=0.238 Sum_probs=40.5
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE------------------------------EcCCCcchhH
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV------------------------------YGGGNVGLMG 57 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV------------------------------~GGg~~GlM~ 57 (184)
+..|++|+++.-.. ++...+.+.++.++|.++|+.++ +=||. |-|=
T Consensus 2 ~~~~~~i~iv~~~~---~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGD-GT~L 77 (292)
T PRK03378 2 NNHFKCIGIVGHPR---HPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGD-GNML 77 (292)
T ss_pred CccCCEEEEEEeCC---CHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCc-HHHH
Confidence 34578899996432 45666778888888766554333 33445 7776
Q ss_pred HHHHHHHhcCCeEEEE
Q 044681 58 LISEEVHRGRRHVLGI 73 (184)
Q Consensus 58 a~a~ga~~~GG~viGv 73 (184)
-+++.+...+-.++||
T Consensus 78 ~aa~~~~~~~~Pilgi 93 (292)
T PRK03378 78 GAARVLARYDIKVIGI 93 (292)
T ss_pred HHHHHhcCCCCeEEEE
Confidence 6777666656677777
No 126
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=46.44 E-value=70 Score=25.51 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=40.9
Q ss_pred hCCEEEEec----CccccHHHHHHHHHH--HHhCC-CCCCEEEEEEecCCHHHHHHHhh
Q 044681 107 YADCFIVLP----GGFGTLEKLFEVTTW--SQLGV-HNKPVAIIMVSASNAKELVQKLE 158 (184)
Q Consensus 107 ~sDa~IvlP----GG~GTL~El~~~l~~--~qlg~-~~kPvvl~i~~~~~~~e~~~~l~ 158 (184)
.-|++|+|+ |+.--.+-+....+. +++.+ +.+||++.+..+++.+++++...
T Consensus 71 ~~DavIalG~VIrG~T~H~e~V~~~v~~gl~~v~l~~~~PV~~GVLt~~~~eQa~~R~~ 129 (154)
T PRK00061 71 KYDAVIALGAVIRGETPHFDYVANEVAKGLADVSLETGVPVGFGVLTTDTIEQAIERAG 129 (154)
T ss_pred CCCEEEEEeeEEcCCCchHHHHHHHHHHHHHHHHhccCCCEEEEecCCCCHHHHHHHhC
Confidence 368998886 777667777766553 45664 78999999999999999999886
No 127
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=46.11 E-value=65 Score=27.32 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=35.7
Q ss_pred HHHHHHhCCEEEEe--cCccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhhcC
Q 044681 101 KAEMARYADCFIVL--PGGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 101 k~~m~~~sDa~Ivl--PGG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~~~ 162 (184)
..-+...||+++.- ..|+|.- ++|++++ ++||+. .++-.+|++++.+.|.+...
T Consensus 296 ~~~~~~~adi~l~ps~~e~~~~~--l~Ea~a~------G~Pvi~s~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~l~~ 367 (398)
T cd03800 296 LPALYRAADVFVNPALYEPFGLT--ALEAMAC------GLPVVATAVGGPRDIVVDGVTGLLVDPRDPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHhCCEEEecccccccCcH--HHHHHhc------CCCEEECCCCCHHHHccCCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 34456779998743 2444532 6677665 889987 33334689999999987643
No 128
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=45.77 E-value=64 Score=25.92 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=34.3
Q ss_pred HHHHHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhhc
Q 044681 101 KAEMARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 101 k~~m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~~ 161 (184)
..-++..||++|... .|+|+ =++|++.. ++|++. .++..+|++++.+.|.+..
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~--~~~Ea~~~------g~pvI~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 339 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGL--VLLEAMAA------GLPVVASDVGGIPEVVEDGETGLLVPPGDPEALAEAILRLL 339 (374)
T ss_pred HHHHHHhcCEEEecchhccccc--hHHHHHHc------CCcEEEeCCCChhHHhcCCcceEEeCCCCHHHHHHHHHHHH
Confidence 444557799877543 23332 25566654 789888 3445566899999998854
No 129
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=45.29 E-value=65 Score=26.15 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=34.0
Q ss_pred HHHHhCCEEEEecCcc-ccHHHHHHHHHHHHhCCCCCCEEE--------------EEEecCCHHHHHHHhhhhcC
Q 044681 103 EMARYADCFIVLPGGF-GTLEKLFEVTTWSQLGVHNKPVAI--------------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 103 ~m~~~sDa~IvlPGG~-GTL~El~~~l~~~qlg~~~kPvvl--------------~i~~~~~~~e~~~~l~~~~~ 162 (184)
-+...||++|. |... |.-.=+.|++.. ++||+. .++..+|++++.+.+.+...
T Consensus 264 ~~~~~adi~v~-ps~~e~~~~~~~Ea~a~------g~PvI~~~~~~~~e~~~~~g~~~~~~~~~~l~~~i~~l~~ 331 (365)
T cd03807 264 ALLNALDVFVL-SSLSEGFPNVLLEAMAC------GLPVVATDVGDNAELVGDTGFLVPPGDPEALAEAIEALLA 331 (365)
T ss_pred HHHHhCCEEEe-CCccccCCcHHHHHHhc------CCCEEEcCCCChHHHhhcCCEEeCCCCHHHHHHHHHHHHh
Confidence 45678998775 4322 211225566654 889988 34445789999998887643
No 130
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=45.13 E-value=1.1e+02 Score=25.26 Aligned_cols=57 Identities=23% Similarity=0.447 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCEEEEec----CccccHHHHHHHHHHHHhCCCCCCEEE-----------------EEEecCCHHHHHHH
Q 044681 98 HQRKAEMARYADCFIVLP----GGFGTLEKLFEVTTWSQLGVHNKPVAI-----------------IMVSASNAKELVQK 156 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlP----GG~GTL~El~~~l~~~qlg~~~kPvvl-----------------~i~~~~~~~e~~~~ 156 (184)
.+....+...||++|... .|+|.- +.|++.. ++||+. .++..+|++++.+.
T Consensus 254 ~~~~~~~~~~ad~~i~ps~~~~e~~g~~--~~Ea~~~------g~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~ 325 (357)
T cd03795 254 DEEKAALLAACDVFVFPSVERSEAFGIV--LLEAMAF------GKPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEA 325 (357)
T ss_pred HHHHHHHHHhCCEEEeCCcccccccchH--HHHHHHc------CCCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHH
Confidence 344566778899987642 455542 5566654 789887 23444689999999
Q ss_pred hhhhcC
Q 044681 157 LEDYEP 162 (184)
Q Consensus 157 l~~~~~ 162 (184)
|.+...
T Consensus 326 i~~l~~ 331 (357)
T cd03795 326 IRRLLE 331 (357)
T ss_pred HHHHHH
Confidence 988653
No 131
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=45.12 E-value=98 Score=25.62 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCEEEEecCc------cccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHH
Q 044681 98 HQRKAEMARYADCFIVLPGG------FGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQ 155 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlPGG------~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~ 155 (184)
.+...-+...||+++...-. -|.-.=++|++.. ++|++. .++..+|++++.+
T Consensus 246 ~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~------G~Pvi~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~ 319 (355)
T cd03799 246 QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAM------GLPVISTDVSGIPELVEDGETGLLVPPGDPEALAD 319 (355)
T ss_pred hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHc------CCCEEecCCCCcchhhhCCCceEEeCCCCHHHHHH
Confidence 34555666889987764322 2333446777764 889987 2333358999999
Q ss_pred HhhhhcC
Q 044681 156 KLEDYEP 162 (184)
Q Consensus 156 ~l~~~~~ 162 (184)
.|.++..
T Consensus 320 ~i~~~~~ 326 (355)
T cd03799 320 AIERLLD 326 (355)
T ss_pred HHHHHHh
Confidence 9988653
No 132
>PRK06756 flavodoxin; Provisional
Probab=45.09 E-value=53 Score=24.95 Aligned_cols=34 Identities=6% Similarity=0.111 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|++|.|+.+|..++. .+.|+.+++.|.+.|+.+.
T Consensus 1 mmkv~IiY~S~tGnT---e~vA~~ia~~l~~~g~~v~ 34 (148)
T PRK06756 1 MSKLVMIFASMSGNT---EEMADHIAGVIRETENEIE 34 (148)
T ss_pred CceEEEEEECCCchH---HHHHHHHHHHHhhcCCeEE
Confidence 457777777777643 3567788888877787654
No 133
>CHL00175 minD septum-site determining protein; Validated
Probab=44.81 E-value=54 Score=27.58 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=28.5
Q ss_pred cccccccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 3 EKKEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 3 ~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|.|.+.+.|.+|-.+.|.+.+...-. .|..|+..|++.|+.++
T Consensus 6 ~~~~~~~~~~~vi~v~s~KGGvGKTt--~a~nLA~~La~~g~~vl 48 (281)
T CHL00175 6 EDKEKSATMSRIIVITSGKGGVGKTT--TTANLGMSIARLGYRVA 48 (281)
T ss_pred hhhhhcCCCceEEEEEcCCCCCcHHH--HHHHHHHHHHhCCCeEE
Confidence 34455555555555555666655543 68899999999997554
No 134
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=44.51 E-value=25 Score=28.57 Aligned_cols=39 Identities=28% Similarity=0.333 Sum_probs=28.3
Q ss_pred HHHhCCEEEEecCccccHHHHHHHHHHHHh-----C-CCCCCEEE
Q 044681 104 MARYADCFIVLPGGFGTLEKLFEVTTWSQL-----G-VHNKPVAI 142 (184)
Q Consensus 104 m~~~sDa~IvlPGG~GTL~El~~~l~~~ql-----g-~~~kPvvl 142 (184)
+...+|++|+.|=..+|+.-++.-++-.-+ . ..++|+++
T Consensus 74 l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi 118 (182)
T PRK07313 74 LAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLI 118 (182)
T ss_pred cccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEE
Confidence 345689999999999999888765443221 1 24799998
No 135
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=44.42 E-value=2.2e+02 Score=24.94 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=48.6
Q ss_pred CCCChHH-HHHHHHHHHHHHH----CCCeEEE---cCC-CcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEe
Q 044681 22 PDYKYCY-RKAAIDLGNELVS----KGLDLVY---GGG-NVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVK 92 (184)
Q Consensus 22 ~~~~~~~-~~~A~~lG~~LA~----~G~~lV~---GGg-~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~ 92 (184)
.+.++.. ++.|.+.-+.|-+ .+..+++ ||| ++|.=-.+++-+++.+-.+++|.|..+.. |- ..
T Consensus 60 aG~~~~~G~~~a~e~~~~I~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~-Eg-------~~ 131 (303)
T cd02191 60 AGANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSD-EG-------GI 131 (303)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCccc-CC-------cc
Confidence 3455543 4555444444433 3444444 333 35777777888999988999997643211 10 11
Q ss_pred ecCChHHHHHHHHHhCCEEEEecC
Q 044681 93 PVDHMHQRKAEMARYADCFIVLPG 116 (184)
Q Consensus 93 ~~~~~~~Rk~~m~~~sDa~IvlPG 116 (184)
....=......|.+.+|.+|+++=
T Consensus 132 ~~~NA~~~l~~L~~~~D~~iv~dN 155 (303)
T cd02191 132 RMLNAAEGFQTLVREVDNLMVIPN 155 (303)
T ss_pred chhhHHHHHHHHHHhCCEEEEEeh
Confidence 111112344456678888888873
No 136
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=43.89 E-value=59 Score=23.87 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=6.0
Q ss_pred HHHHHhcCCeEEE
Q 044681 60 SEEVHRGRRHVLG 72 (184)
Q Consensus 60 a~ga~~~GG~viG 72 (184)
.+-..+.|..+++
T Consensus 103 ~~~l~~~g~~~v~ 115 (140)
T TIGR01753 103 EERLKEAGATIIA 115 (140)
T ss_pred HHHHHHCCCEEec
Confidence 3333335665544
No 137
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=43.68 E-value=1e+02 Score=26.78 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCEEEEe--cCccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhh
Q 044681 98 HQRKAEMARYADCFIVL--PGGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLED 159 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~Ivl--PGG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~ 159 (184)
.+...-++..||++|.- ..|+|.- +.|+++. ++||+. .++-.+|++++.+.|.+
T Consensus 293 ~~~~~~~l~~ad~~v~ps~~E~~g~~--~lEAma~------G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~la~~i~~ 364 (405)
T TIGR03449 293 PEELVHVYRAADVVAVPSYNESFGLV--AMEAQAC------GTPVVAARVGGLPVAVADGETGLLVDGHDPADWADALAR 364 (405)
T ss_pred HHHHHHHHHhCCEEEECCCCCCcChH--HHHHHHc------CCCEEEecCCCcHhhhccCCceEECCCCCHHHHHHHHHH
Confidence 34555677899998764 2556643 6666654 789888 22223589999888887
Q ss_pred hcC
Q 044681 160 YEP 162 (184)
Q Consensus 160 ~~~ 162 (184)
+..
T Consensus 365 ~l~ 367 (405)
T TIGR03449 365 LLD 367 (405)
T ss_pred HHh
Confidence 643
No 138
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=43.68 E-value=56 Score=25.94 Aligned_cols=66 Identities=15% Similarity=0.144 Sum_probs=39.1
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhhhcCCCCCcccccccccc
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEPSHDGVVAKAEWDAE 176 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 176 (184)
.+..++|.+++.||++++...+...+ .++.++.-.++-.-+.++.++.++++.+-. ....+-|+.+
T Consensus 129 ~a~vIlV~~~~~g~i~~~l~~~~~~~--~~g~~v~GvI~N~~~~~~~~~~l~~~~~i~--vlg~iP~~~~ 194 (199)
T PF13500_consen 129 GAPVILVASGRLGTINHTLLTIEALK--QRGIRVLGVILNRVPEPENLEALREKSGIP--VLGVIPEDPD 194 (199)
T ss_dssp T-EEEEEEESSTTHHHHHHHHHHHHH--CTTS-EEEEEEEECTCCHHHHHHHHHHCCE--ECE---SSTT
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHH--hcCCCEEEEEEECCCCHHHHHHHHHhCCCC--EEEECCCCcc
Confidence 57899999999999999987666554 334454432222223347888888875532 3445555544
No 139
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit. This model recognizes the CbiE methylase which is responsible, in part (along with CbiT), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiT subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=43.42 E-value=1.7e+02 Score=23.48 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccc---cccccCCCCceEee---c-CChHHHHH
Q 044681 30 KAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALM---KKELTGVTLGEVKP---V-DHMHQRKA 102 (184)
Q Consensus 30 ~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~---~~e~~~~~~~~~~~---~-~~~~~Rk~ 102 (184)
+....+.+........+++.|=| ++-+....-+...+..-+=|+|..-. ......-++.+..+ . .....+..
T Consensus 55 ~~~~~i~~~~~g~~vv~l~~GDP-~~~~~~~~l~~~~~~~~v~iiPGiSs~~~a~a~~g~~l~~~~~is~~~~~~~~~~~ 133 (204)
T TIGR02467 55 ELLEFIAATRKEKRVVVLASGDP-LFYGIGRTLAERLGKERLEIIPGISSVQYAFARLGLPWQDAVVISLHGRELDELLL 133 (204)
T ss_pred HHHHHHHHhcCCCCEEEEecCCC-cccccHHHHHHhCCCCcEEEeCChHHHHHHHHHcCCChhhCeEEEeeCCCCcHHHH
Confidence 34444443332334556676665 88777666555555444677776521 11111122222221 1 11222222
Q ss_pred HHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCC-CEEE--------EEEecCCHHHHHH
Q 044681 103 EMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNK-PVAI--------IMVSASNAKELVQ 155 (184)
Q Consensus 103 ~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~k-Pvvl--------~i~~~~~~~e~~~ 155 (184)
..+...+-++++.++-.++.++.+.+. +.|..+. |+.+ --+...+.+|+.+
T Consensus 134 ~~l~~~~~~vvl~~~~~~~~~i~~~L~--~~g~~~~~~v~v~~~l~~~~E~i~~~tl~el~~ 193 (204)
T TIGR02467 134 ALLRGHRKVAVLTDPRNGPAEIARELI--ELGIGGSYELTVGENLGYEDERITEGTLEEIAA 193 (204)
T ss_pred HHHhcCCcEEEEeCCCCCHHHHHHHHH--HCCCCCCeEEEEEcccCCCCeEEEeCCHHHHhh
Confidence 334567788888888889999999764 4554444 8877 2223346777644
No 140
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=42.78 E-value=36 Score=26.15 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCEEEEec-----CccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 98 HQRKAEMARYADCFIVLP-----GGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlP-----GG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
..=.+.|++.+|++|++. =..|+.-|+-.+.++ ++||.+
T Consensus 70 ~~~d~~~L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~------~~~V~~ 113 (116)
T PF09152_consen 70 EDWDRPFLDACDELVVLDIPGWDDSEGIWAEIEAAEEM------GMPVFL 113 (116)
T ss_dssp HHHHHHHHHH-SEEEE---TTGGG-HHHHHHHHHHHHT------T-EEEE
T ss_pred HHHhHHHHHhcceeEEecCCCccccccHHHHHHHHHHc------CCeEEE
Confidence 344567889999999996 478999999988876 778864
No 141
>PRK06924 short chain dehydrogenase; Provisional
Probab=42.70 E-value=48 Score=26.70 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
|++|.|.|+++ -..+.+++.|+++|+.|+.
T Consensus 1 ~k~vlItGasg--------giG~~ia~~l~~~g~~V~~ 30 (251)
T PRK06924 1 MRYVIITGTSQ--------GLGEAIANQLLEKGTHVIS 30 (251)
T ss_pred CcEEEEecCCc--------hHHHHHHHHHHhcCCEEEE
Confidence 45777777765 2666777777778877653
No 142
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=42.62 E-value=52 Score=28.07 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=26.5
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 13 RVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
+|+|++|....+.+.=...++.+.+.|.+.||.++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~ 36 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVT 36 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEE
Confidence 56666655555566667899999999999999764
No 143
>PRK05867 short chain dehydrogenase; Provisional
Probab=42.58 E-value=1.4e+02 Score=24.13 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
+++.|.|+++ -..+++.+.|+++|+.|+..+..
T Consensus 10 k~vlVtGas~--------gIG~~ia~~l~~~G~~V~~~~r~ 42 (253)
T PRK05867 10 KRALITGAST--------GIGKRVALAYVEAGAQVAIAARH 42 (253)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcCC
Confidence 5788888765 26778888888999998765544
No 144
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=42.46 E-value=47 Score=29.06 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
++|+|.+|....+.+.=...++.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~~ 39 (333)
T PRK01966 4 MRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEVV 39 (333)
T ss_pred cEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEEE
Confidence 467777776666667777899999999999999876
No 145
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=42.32 E-value=42 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.192 Sum_probs=17.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|+|+|+|.|..... .++.+-+.|.++|+.+.
T Consensus 1 ksiAVvGaS~~~~~-----~g~~v~~~l~~~G~~v~ 31 (116)
T PF13380_consen 1 KSIAVVGASDNPGK-----FGYRVLRNLKAAGYEVY 31 (116)
T ss_dssp -EEEEET--SSTTS-----HHHHHHHHHHHTT-EEE
T ss_pred CEEEEEcccCCCCC-----hHHHHHHHHHhCCCEEE
Confidence 58999998874322 34556666666887764
No 146
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=42.19 E-value=61 Score=24.18 Aligned_cols=32 Identities=16% Similarity=0.455 Sum_probs=23.9
Q ss_pred eEEEcCCCcchhHHHHHHHHhcCC----eEEEEecCc
Q 044681 45 DLVYGGGNVGLMGLISEEVHRGRR----HVLGIIPRA 77 (184)
Q Consensus 45 ~lV~GGg~~GlM~a~a~ga~~~GG----~viGviP~~ 77 (184)
.||..||. |..-.+..+..+... ..+|++|..
T Consensus 52 ~vvv~GGD-GTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 52 RVLVCGGD-GTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred EEEEEccc-cHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 66667777 888888888876654 479999853
No 147
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=41.92 E-value=1.4e+02 Score=22.11 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=20.3
Q ss_pred eEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 45 DLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 45 ~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
.||+||.. |+=.++++...+.|+.++-++
T Consensus 3 ~lItGa~~-giG~~~a~~l~~~g~~~v~~~ 31 (167)
T PF00106_consen 3 VLITGASS-GIGRALARALARRGARVVILT 31 (167)
T ss_dssp EEEETTTS-HHHHHHHHHHHHTTTEEEEEE
T ss_pred EEEECCCC-HHHHHHHHHHHhcCceEEEEe
Confidence 56777777 777777887777766554443
No 148
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=41.68 E-value=46 Score=28.71 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCe--EEEEe
Q 044681 30 KAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRH--VLGII 74 (184)
Q Consensus 30 ~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~--viGvi 74 (184)
..++++++.|-.+|..+|+.-.. +.-..+.+.|.+.|.. +||+-
T Consensus 175 ~~~~~~a~~li~~GaDvI~~~ag-~~~~gv~~aa~e~g~~~~~IG~d 220 (306)
T PF02608_consen 175 AKAKEAAEALIDQGADVIFPVAG-GSGQGVIQAAKEAGVYGYVIGVD 220 (306)
T ss_dssp HHHHHHHHHHHHTT-SEEEEE-C-CCHHHHHHHHHHHTHETEEEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEECCC-CCchHHHHHHHHcCCceEEEEec
Confidence 47888999989999999998333 3445556668888877 99984
No 149
>PRK05723 flavodoxin; Provisional
Probab=41.61 E-value=47 Score=26.03 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
++|+|+.+|..++.+ +.|+++.+.|.+.|+.+.
T Consensus 1 ~~i~I~ygS~tG~ae---~~A~~la~~l~~~g~~~~ 33 (151)
T PRK05723 1 MKVAILSGSVYGTAE---EVARHAESLLKAAGFEAW 33 (151)
T ss_pred CeEEEEEEcCchHHH---HHHHHHHHHHHHCCCcee
Confidence 478888888887433 568888888888888864
No 150
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=41.59 E-value=46 Score=29.24 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
++|+|++|....+.+.=...|+.+.+.|.+.||.++
T Consensus 4 ~~i~vl~GG~S~E~evSl~s~~~v~~~l~~~~~~v~ 39 (343)
T PRK14568 4 IKVGILFGGCSEEHPVSVKSAIEVARNLDTEKYEPF 39 (343)
T ss_pred cEEEEEECCCCCchHHHHHhHHHHHHhhcccCCeEE
Confidence 467777777766677778899999999999999987
No 151
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=41.43 E-value=48 Score=28.23 Aligned_cols=36 Identities=14% Similarity=0.056 Sum_probs=26.7
Q ss_pred ccccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHH
Q 044681 6 EAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVS 41 (184)
Q Consensus 6 ~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~ 41 (184)
.|.++.++|+|||||=.+..--+...|+++-+.+.-
T Consensus 16 ~~~~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~l 51 (243)
T PRK06973 16 PPLARPRRIGILGGTFDPIHDGHLALARRFADVLDL 51 (243)
T ss_pred CCCCCCceEEEECCCCCCCcHHHHHHHHHHHHHcCC
Confidence 455556789999999866666677788887777654
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=41.25 E-value=2.7e+02 Score=25.80 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=48.4
Q ss_pred CeEEEcCCCcc---hhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEE-----ec
Q 044681 44 LDLVYGGGNVG---LMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIV-----LP 115 (184)
Q Consensus 44 ~~lV~GGg~~G---lM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Iv-----lP 115 (184)
..++||+-++| |+.|++..+.+.|..++-+....+.. + +.+.+....+. +-+......|.+++ +.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~-~-----~~~~l~~~~~~-~f~~~~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE-H-----LVSAIRSGEMQ-RFRQFYRNVDALFIEDIEVFS 215 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH-H-----HHHHHhcchHH-HHHHHcccCCEEEEcchhhhc
Confidence 35778765544 89999998888888877664322211 0 00000011121 11222345665554 45
Q ss_pred CccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 116 GGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 116 GG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
|.-.|.+|+|..+.... ..++++++
T Consensus 216 ~k~~~qeelf~l~N~l~--~~~k~IIl 240 (445)
T PRK12422 216 GKGATQEEFFHTFNSLH--TEGKLIVI 240 (445)
T ss_pred CChhhHHHHHHHHHHHH--HCCCcEEE
Confidence 55668889888765332 23577776
No 153
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=41.22 E-value=2.3e+02 Score=24.22 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 99 QRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
..-.-++..||++|. ++|.+|+-| ++.. ++|++.
T Consensus 244 ~~~~~~~~~~d~~i~-~~g~~~~~E---a~~~------g~Pvv~ 277 (357)
T PRK00726 244 DDMAAAYAAADLVIC-RAGASTVAE---LAAA------GLPAIL 277 (357)
T ss_pred hhHHHHHHhCCEEEE-CCCHHHHHH---HHHh------CCCEEE
Confidence 334456688999986 555666544 4444 788886
No 154
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.20 E-value=1.6e+02 Score=25.90 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDL 46 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 46 (184)
|++|+++.-.. ++...+.++++.++|.++|+.+
T Consensus 1 m~~igiv~n~~---~~~~~~~~~~l~~~L~~~g~~v 33 (305)
T PRK02649 1 MPKAGIIYNDG---KPLAVRTAEELQDKLEAAGWEV 33 (305)
T ss_pred CCEEEEEEcCC---CHHHHHHHHHHHHHHHHCCCEE
Confidence 56799986432 3455677888888887766544
No 155
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=41.07 E-value=52 Score=29.05 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=26.7
Q ss_pred CccccccccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 1 MEEKKEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 1 ~~~~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|+.|++....-|+|.|.|++.. ....|.+.|.++||.|+
T Consensus 11 ~~~~~~~~~~~~~IlVtGgtGf--------IG~~l~~~L~~~G~~V~ 49 (370)
T PLN02695 11 LEREPYWPSEKLRICITGAGGF--------IASHIARRLKAEGHYII 49 (370)
T ss_pred cCCCCCCCCCCCEEEEECCccH--------HHHHHHHHHHhCCCEEE
Confidence 3455566666688999988752 56667777777777665
No 156
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=41.04 E-value=1.8e+02 Score=25.22 Aligned_cols=72 Identities=18% Similarity=0.316 Sum_probs=41.0
Q ss_pred HHHHHHCCCeEEE---cCCC-cchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEE
Q 044681 36 GNELVSKGLDLVY---GGGN-VGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCF 111 (184)
Q Consensus 36 G~~LA~~G~~lV~---GGg~-~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~ 111 (184)
-+.|-..+..+|+ |||. +|.--.+++-+.+.|-.+++|.|..+. .|. ......=...-..|.+.+|++
T Consensus 79 ~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~-~Eg-------~~~~~nA~~~l~~L~~~~d~~ 150 (304)
T cd02201 79 KEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFS-FEG-------KKRMRQAEEGLEELRKHVDTL 150 (304)
T ss_pred HHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccc-------hhHHHHHHHHHHHHHHhCCEE
Confidence 3444445666665 4443 467666788888888888888753221 110 000011123444566889999
Q ss_pred EEec
Q 044681 112 IVLP 115 (184)
Q Consensus 112 IvlP 115 (184)
|+++
T Consensus 151 ivid 154 (304)
T cd02201 151 IVIP 154 (304)
T ss_pred EEEe
Confidence 9888
No 157
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=40.98 E-value=27 Score=28.41 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=26.4
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHh-------CCCCCCEEE
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQL-------GVHNKPVAI 142 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~ql-------g~~~kPvvl 142 (184)
.+|++|+.|=..+|+..++.-++-.-+ =..++|+++
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i 117 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVL 117 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEE
Confidence 489999999999999988765433211 124789988
No 158
>PRK07023 short chain dehydrogenase; Provisional
Probab=40.63 E-value=52 Score=26.47 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
|++|.|.|+++. ..+.+.+.|+++|+.++.
T Consensus 1 ~~~vlItGasgg--------iG~~ia~~l~~~G~~v~~ 30 (243)
T PRK07023 1 AVRAIVTGHSRG--------LGAALAEQLLQPGIAVLG 30 (243)
T ss_pred CceEEEecCCcc--------hHHHHHHHHHhCCCEEEE
Confidence 457888887762 567777777888888764
No 159
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=40.62 E-value=2.5e+02 Score=24.57 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=61.0
Q ss_pred CCCeEEEcCCC--cchhHHHHHHHHhcCCeEEEE-ecCccccccccCCCCceEee--cCChH-HHHHHHHHhCCEEEEec
Q 044681 42 KGLDLVYGGGN--VGLMGLISEEVHRGRRHVLGI-IPRALMKKELTGVTLGEVKP--VDHMH-QRKAEMARYADCFIVLP 115 (184)
Q Consensus 42 ~G~~lV~GGg~--~GlM~a~a~ga~~~GG~viGv-iP~~~~~~e~~~~~~~~~~~--~~~~~-~Rk~~m~~~sDa~IvlP 115 (184)
+|..+|-||.. .|---.++.+|...|.-.+-+ .|..... . ......++.. ..+.. ..+..+.+..|++++=|
T Consensus 32 ~G~vliigG~~~y~GA~~laa~aAl~~GaglV~v~~~~~~~~-~-~~s~~Pe~mv~~~~~~~~~~~~~~~~~~~avviGp 109 (284)
T COG0063 32 YGRVLIIGGSRGYTGAPVLAALAALRAGAGLVSLASPPEAAS-A-LKSYLPELMVIEVEGKKLLEERELVERADAVVIGP 109 (284)
T ss_pred CCeEEEEcCCCCCCCHHHHHHHHHHHhCCCeEEEecchhhhh-h-HhhcCcceeEeecccchhhHHhhhhccCCEEEECC
Confidence 57888877774 355555677788877544444 3432110 0 1111223332 22222 22336678889877654
Q ss_pred CccccHHHHHHHHHHHHhCCCCCCEEE------------------EEEecCCHHHHHHHhh
Q 044681 116 GGFGTLEKLFEVTTWSQLGVHNKPVAI------------------IMVSASNAKELVQKLE 158 (184)
Q Consensus 116 GG~GTL~El~~~l~~~qlg~~~kPvvl------------------~i~~~~~~~e~~~~l~ 158 (184)
|.|.-+|..+++...-.... +|+++ .++++..+-|.-.++.
T Consensus 110 -GlG~~~~~~~~~~~~l~~~~-~p~ViDADaL~~la~~~~~~~~~~~VlTPH~gEf~rL~g 168 (284)
T COG0063 110 -GLGRDAEGQEALKELLSSDL-KPLVLDADALNLLAELPDLLDERKVVLTPHPGEFARLLG 168 (284)
T ss_pred -CCCCCHHHHHHHHHHHhccC-CCEEEeCcHHHHHHhCcccccCCcEEECCCHHHHHHhcC
Confidence 68887776665544322222 89998 2555666666666554
No 160
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.40 E-value=1.7e+02 Score=25.60 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=36.5
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe--------------------------EEEcCCCcchhHHHHHHH
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLD--------------------------LVYGGGNVGLMGLISEEV 63 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~--------------------------lV~GGg~~GlM~a~a~ga 63 (184)
++++|.++--. + ++...+.+.++-++|.++|+. +++-||. |-|-.+++..
T Consensus 2 ~~kkv~lI~n~--~-~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGD-GT~l~~~~~~ 77 (305)
T PRK02645 2 QLKQVIIAYKA--G-SSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGD-GTVLAAARHL 77 (305)
T ss_pred CcCEEEEEEeC--C-CHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCc-HHHHHHHHHh
Confidence 35678888543 2 344445677777767655533 3345667 8888777777
Q ss_pred HhcCCeEEEE
Q 044681 64 HRGRRHVLGI 73 (184)
Q Consensus 64 ~~~GG~viGv 73 (184)
...+-.++||
T Consensus 78 ~~~~~pv~gi 87 (305)
T PRK02645 78 APHDIPILSV 87 (305)
T ss_pred ccCCCCEEEE
Confidence 6555455554
No 161
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=40.02 E-value=1.4e+02 Score=24.80 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=36.3
Q ss_pred HHHHHHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhhc
Q 044681 100 RKAEMARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 100 Rk~~m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~~ 161 (184)
....+...||++|.-. .|+|. =+.|++.. ++||+. .++...|++++.+.+.+..
T Consensus 257 ~~~~~~~~ad~~l~ps~~e~~g~--~~~Eam~~------g~PvI~~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~ 328 (365)
T cd03825 257 SLALIYSAADVFVVPSLQENFPN--TAIEALAC------GTPVVAFDVGGIPDIVDHGVTGYLAKPGDPEDLAEGIEWLL 328 (365)
T ss_pred HHHHHHHhCCEEEeccccccccH--HHHHHHhc------CCCEEEecCCCChhheeCCCceEEeCCCCHHHHHHHHHHHH
Confidence 4455778899987743 23332 35666654 889887 3344457999999888765
Q ss_pred C
Q 044681 162 P 162 (184)
Q Consensus 162 ~ 162 (184)
.
T Consensus 329 ~ 329 (365)
T cd03825 329 A 329 (365)
T ss_pred h
Confidence 3
No 162
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=40.02 E-value=72 Score=29.37 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=27.0
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.|+|||.-| .=||+|-+.+|+++--+ .+|||||
T Consensus 140 ~dGvVVtHG-TDTM~yTA~aLs~~l~~-~~kPVVl 172 (404)
T TIGR02153 140 ADGVVVAHG-TDTMAYTAAALSFMFET-LPVPVVL 172 (404)
T ss_pred CCcEEEecC-ChhHHHHHHHHHHHhhC-CCCCEEE
Confidence 699999886 78999999999875322 3799999
No 163
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=39.89 E-value=31 Score=28.79 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=41.1
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhC-------CCCCCEEE-------------------------------EEEecCC
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLG-------VHNKPVAI-------------------------------IMVSASN 149 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg-------~~~kPvvl-------------------------------~i~~~~~ 149 (184)
.|+.|+.|=...||..|+.-++-.-+. ..++|.++ +...-.+
T Consensus 81 ~~gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~Pp~PaFY~~P~s 160 (191)
T COG0163 81 TDGMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIMPPMPAFYHKPQS 160 (191)
T ss_pred cCcEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEecCCChhhhcCCCC
Confidence 589999999999999999877765543 24788888 5566689
Q ss_pred HHHHHHHhhh
Q 044681 150 AKELVQKLED 159 (184)
Q Consensus 150 ~~e~~~~l~~ 159 (184)
.||+++++-.
T Consensus 161 ieDlvd~~v~ 170 (191)
T COG0163 161 IEDLVDFVVG 170 (191)
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 164
>PRK06703 flavodoxin; Provisional
Probab=39.78 E-value=64 Score=24.56 Aligned_cols=14 Identities=7% Similarity=0.140 Sum_probs=7.2
Q ss_pred HHHHHHhcCCeEEE
Q 044681 59 ISEEVHRGRRHVLG 72 (184)
Q Consensus 59 ~a~ga~~~GG~viG 72 (184)
+.+-..+.|..+++
T Consensus 105 l~~~l~~~G~~~~~ 118 (151)
T PRK06703 105 FEERLVERGAELVQ 118 (151)
T ss_pred HHHHHHHCCCEEcc
Confidence 34444446666555
No 165
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=39.77 E-value=1.5e+02 Score=24.86 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHhCCEEEEecCcc-------ccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHh
Q 044681 101 KAEMARYADCFIVLPGGF-------GTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKL 157 (184)
Q Consensus 101 k~~m~~~sDa~IvlPGG~-------GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l 157 (184)
..-+...||++|. |.-. |.-.=++|+++. ++||+. .++-.+|++++.+.|
T Consensus 258 l~~~~~~ad~~v~-ps~~~~~~~~E~~~~~~~EA~a~------G~PvI~s~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i 330 (367)
T cd05844 258 VRELMRRARIFLQ-PSVTAPSGDAEGLPVVLLEAQAS------GVPVVATRHGGIPEAVEDGETGLLVPEGDVAALAAAL 330 (367)
T ss_pred HHHHHHhCCEEEE-CcccCCCCCccCCchHHHHHHHc------CCCEEEeCCCCchhheecCCeeEEECCCCHHHHHHHH
Confidence 3446688998765 3311 112236666654 889987 334356899999999
Q ss_pred hhhcC
Q 044681 158 EDYEP 162 (184)
Q Consensus 158 ~~~~~ 162 (184)
.+...
T Consensus 331 ~~l~~ 335 (367)
T cd05844 331 GRLLA 335 (367)
T ss_pred HHHHc
Confidence 88654
No 166
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=39.76 E-value=96 Score=27.56 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhC--CEEEEecCccccHHHHHHHHHHHHh
Q 044681 97 MHQRKAEMARYA--DCFIVLPGGFGTLEKLFEVTTWSQL 133 (184)
Q Consensus 97 ~~~Rk~~m~~~s--Da~IvlPGG~GTL~El~~~l~~~ql 133 (184)
+-+| -+..+.. -..|-+|.-.|.|.++.+.+...+.
T Consensus 294 vi~~-gl~~~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~ 331 (380)
T TIGR01127 294 IIEK-GLVKSGRKVRIETVLPDRPGALYHLLESIAEARA 331 (380)
T ss_pred HHHH-HHHhCCCEEEEEEEeCCCCCHHHHHHHHHhcCCC
Confidence 3445 3333333 5788999999999999998886443
No 167
>PRK07890 short chain dehydrogenase; Provisional
Probab=39.41 E-value=1.4e+02 Score=23.93 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
++|.|.|+++. ..+.+++.|+++|+.|+.....
T Consensus 6 k~vlItGa~~~--------IG~~la~~l~~~G~~V~~~~r~ 38 (258)
T PRK07890 6 KVVVVSGVGPG--------LGRTLAVRAARAGADVVLAART 38 (258)
T ss_pred CEEEEECCCCc--------HHHHHHHHHHHcCCEEEEEeCC
Confidence 57888888763 6777888888899988765543
No 168
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=39.37 E-value=43 Score=25.78 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhH
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMG 57 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~ 57 (184)
|++|+||-+|..++.. ..|+.+.+.|...|+.+..==.+ ++..
T Consensus 1 M~ki~Ivy~S~tGnTe---~vA~~i~~~l~~~~~~~~~~~~~-~~~~ 43 (151)
T COG0716 1 MMKILIVYGSRTGNTE---KVAEIIAEELGADGFEVDIDIRP-GIKD 43 (151)
T ss_pred CCeEEEEEEcCCCcHH---HHHHHHHHHhccCCceEEEeecC-Ccch
Confidence 6789999989988532 46888888888888777433333 4443
No 169
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=39.28 E-value=40 Score=26.98 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=16.3
Q ss_pred CceEEEEcCCCCCCChHHHHHHHH
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAID 34 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~ 34 (184)
|++|||||||=.+..--+...|++
T Consensus 1 m~~i~ifGGSFDP~H~GHl~ia~~ 24 (174)
T PRK08887 1 MKKIAVFGSAFNPPSLGHKSVIES 24 (174)
T ss_pred CCeEEEeCCCCCCCCHHHHHHHHH
Confidence 568999999875544445555554
No 170
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=39.26 E-value=82 Score=23.49 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=24.3
Q ss_pred ccccccCCceEEEEcCCCCCC------ChHHHHHHHHHHHHHHHCCCeEE---EcCCC
Q 044681 4 KKEAKSRFKRVCVFCGSSPDY------KYCYRKAAIDLGNELVSKGLDLV---YGGGN 52 (184)
Q Consensus 4 ~~~~~~~~~~I~Vfggs~~~~------~~~~~~~A~~lG~~LA~~G~~lV---~GGg~ 52 (184)
+.+.++....+.||||++.-. .+.-.+-.+..=+.|+++|+.|+ +||-.
T Consensus 32 ~~Ga~~~~l~aklfGGa~m~~~~~~~~~~IG~rNv~~a~~~L~~~gi~I~a~dvGG~~ 89 (114)
T PF03975_consen 32 KRGARPSRLEAKLFGGANMFPGMNSSSFNIGERNVEAARELLAEEGIPIVAEDVGGNF 89 (114)
T ss_dssp TTT--GGG-EEEEEE----S------SS-HHHHHHHHHHHHHHHTT--EEEEEE-SSS
T ss_pred HcCCCHHHeEEEEeeCcccccccccccCCHHHHHHHHHHHHHHHCCCcEEEeeCCCCC
Confidence 445666778999999998653 12233444445557999999998 45543
No 171
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=39.22 E-value=51 Score=27.93 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
++|+|.+|+...+.+.-.+.++.+-+.|.+.||.++.
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~ 41 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHP 41 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEE
Confidence 3677777666554444456889999999999999753
No 172
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=39.13 E-value=2e+02 Score=23.31 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
++|.|.|+++ -..+.+++.|+++|+.++.-+.
T Consensus 16 k~vlItGas~--------gIG~~ia~~l~~~G~~v~~~~~ 47 (258)
T PRK06935 16 KVAIVTGGNT--------GLGQGYAVALAKAGADIIITTH 47 (258)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeC
Confidence 6788888765 3667778888889998765443
No 173
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=39.07 E-value=21 Score=32.35 Aligned_cols=28 Identities=36% Similarity=0.478 Sum_probs=17.9
Q ss_pred eEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 45 DLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 45 ~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
.||.|||++|++-|++ |.++|-+|+=|=
T Consensus 2 VVVvGgG~aG~~AAi~--AAr~G~~VlLiE 29 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIA--AARAGAKVLLIE 29 (428)
T ss_dssp EEEE--SHHHHHHHHH--HHHTTS-EEEE-
T ss_pred EEEECccHHHHHHHHH--HHHCCCEEEEEE
Confidence 5889999999887764 456777777663
No 174
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=39.05 E-value=1.8e+02 Score=27.37 Aligned_cols=73 Identities=16% Similarity=0.081 Sum_probs=42.1
Q ss_pred CCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCCh---HHHHHHHHHhCCEEEEecCcc
Q 044681 42 KGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHM---HQRKAEMARYADCFIVLPGGF 118 (184)
Q Consensus 42 ~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~---~~Rk~~m~~~sDa~IvlPGG~ 118 (184)
+||.+|+|.|+.|- .+++--.+.|-.++-|=.+...-.+. .+ .+...+..|- ..-++.=++.+|++|+.-+.-
T Consensus 417 ~~hiiI~G~G~~G~--~la~~L~~~g~~vvvId~d~~~~~~~-~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~ 492 (558)
T PRK10669 417 CNHALLVGYGRVGS--LLGEKLLAAGIPLVVIETSRTRVDEL-RE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG 492 (558)
T ss_pred CCCEEEECCChHHH--HHHHHHHHCCCCEEEEECCHHHHHHH-HH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcCCh
Confidence 69999999998554 56776677788888774432211111 11 2222333333 223334467889888775543
No 175
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=38.42 E-value=88 Score=25.65 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=34.1
Q ss_pred HHHHHHhCCEEEEecC--ccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhhcC
Q 044681 101 KAEMARYADCFIVLPG--GFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 101 k~~m~~~sDa~IvlPG--G~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~~~ 162 (184)
..-+...||++|.-.. |+|. =++|+++. ++||+. .++..+|.+++.+.|.+...
T Consensus 260 ~~~~~~~~d~~l~~s~~e~~~~--~~lEa~a~------g~PvI~~~~~~~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~~ 331 (364)
T cd03814 260 LAAAYASADVFVFPSRTETFGL--VVLEAMAS------GLPVVAPDAGGPADIVTDGENGLLVEPGDAEAFAAALAALLA 331 (364)
T ss_pred HHHHHHhCCEEEECcccccCCc--HHHHHHHc------CCCEEEcCCCCchhhhcCCcceEEcCCCCHHHHHHHHHHHHc
Confidence 3345678998774321 2232 25666654 889888 34455778888888887643
No 176
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=37.74 E-value=1.5e+02 Score=26.00 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=37.2
Q ss_pred HHHHHHHHhCCEEEEe---cCccccHHHHHHHHHHHHhCCCCCCEEE---------------EE-E-ecCCHHHHHHHhh
Q 044681 99 QRKAEMARYADCFIVL---PGGFGTLEKLFEVTTWSQLGVHNKPVAI---------------IM-V-SASNAKELVQKLE 158 (184)
Q Consensus 99 ~Rk~~m~~~sDa~Ivl---PGG~GTL~El~~~l~~~qlg~~~kPvvl---------------~i-~-~~~~~~e~~~~l~ 158 (184)
+...-+...||++|.- ..|+|.. +.|+++. ++||+. .+ + -..|++++.+.|.
T Consensus 268 ~~l~~~~~~aDv~v~pS~~~E~f~~~--~lEAma~------G~PVI~s~~gg~~Eiv~~~~~G~~l~~~~d~~~la~~I~ 339 (380)
T PRK15484 268 EKMHNYYPLADLVVVPSQVEEAFCMV--AVEAMAA------GKPVLASTKGGITEFVLEGITGYHLAEPMTSDSIISDIN 339 (380)
T ss_pred HHHHHHHHhCCEEEeCCCCccccccH--HHHHHHc------CCCEEEeCCCCcHhhcccCCceEEEeCCCCHHHHHHHHH
Confidence 3445566889999863 2455543 5666654 889888 22 2 2468999999998
Q ss_pred hhcC
Q 044681 159 DYEP 162 (184)
Q Consensus 159 ~~~~ 162 (184)
+...
T Consensus 340 ~ll~ 343 (380)
T PRK15484 340 RTLA 343 (380)
T ss_pred HHHc
Confidence 7653
No 177
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=37.62 E-value=1.6e+02 Score=23.89 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCEEEEec---CccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhh
Q 044681 99 QRKAEMARYADCFIVLP---GGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLED 159 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlP---GG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~ 159 (184)
+...-+...||++|.-. .|+|. =++|++.. ++|++. .++-.+|++++.+.+.+
T Consensus 254 ~~~~~~~~~ad~~i~ps~~~e~~~~--~~~Ea~a~------G~Pvi~~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 325 (359)
T cd03823 254 EEIDDFYAEIDVLVVPSIWPENFPL--VIREALAA------GVPVIASDIGGMAELVRDGVNGLLFPPGDAEDLAAALER 325 (359)
T ss_pred HHHHHHHHhCCEEEEcCcccCCCCh--HHHHHHHC------CCCEEECCCCCHHHHhcCCCcEEEECCCCHHHHHHHHHH
Confidence 44455678899887532 34443 25666654 889988 45555779999999988
Q ss_pred hcC
Q 044681 160 YEP 162 (184)
Q Consensus 160 ~~~ 162 (184)
...
T Consensus 326 l~~ 328 (359)
T cd03823 326 LID 328 (359)
T ss_pred HHh
Confidence 654
No 178
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=37.61 E-value=59 Score=27.58 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=31.8
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHhCCCC-CCEEE-----------EEEecCCHHHHHHHhhhh
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQLGVHN-KPVAI-----------IMVSASNAKELVQKLEDY 160 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~-kPvvl-----------~i~~~~~~~e~~~~l~~~ 160 (184)
..| +|+.-||=||+.|+...+.. ... .|+.+ .+-...|++++++.+.+-
T Consensus 57 ~~d-~ivv~GGDGTl~~v~~~l~~----~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~ 117 (293)
T TIGR00147 57 GVD-TVIAGGGDGTINEVVNALIQ----LDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAG 117 (293)
T ss_pred CCC-EEEEECCCChHHHHHHHHhc----CCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcC
Confidence 345 45568999999999887732 122 35653 233356888888887753
No 179
>PRK06703 flavodoxin; Provisional
Probab=37.57 E-value=66 Score=24.47 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|++|.|+.+|..++. .+.|+.+++.|...|+.+-
T Consensus 1 mmkv~IiY~S~tGnT---~~iA~~ia~~l~~~g~~v~ 34 (151)
T PRK06703 1 MAKILIAYASMSGNT---EDIADLIKVSLDAFDHEVV 34 (151)
T ss_pred CCeEEEEEECCCchH---HHHHHHHHHHHHhcCCceE
Confidence 456666666776633 3578888888888887653
No 180
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=37.39 E-value=1.7e+02 Score=25.29 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=36.3
Q ss_pred EeecCCh-HHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE---------------EEEecCCHHHHH
Q 044681 91 VKPVDHM-HQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI---------------IMVSASNAKELV 154 (184)
Q Consensus 91 ~~~~~~~-~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl---------------~i~~~~~~~e~~ 154 (184)
+.+.+.+ ..+...++..||++|. +.| +. +.|++.+ ++|++. .+.+..|++++.
T Consensus 257 v~~~~~~~~~~~~~~l~~ad~vv~-~Sg--~~--~~EA~a~------g~PvI~~~~~~~~~e~~~~g~~~lv~~d~~~i~ 325 (365)
T TIGR00236 257 VHLIEPLEYLDFLNLAANSHLILT-DSG--GV--QEEAPSL------GKPVLVLRDTTERPETVEAGTNKLVGTDKENIT 325 (365)
T ss_pred EEEECCCChHHHHHHHHhCCEEEE-CCh--hH--HHHHHHc------CCCEEECCCCCCChHHHhcCceEEeCCCHHHHH
Confidence 4444433 3344456678887764 433 22 3455554 788877 233457899999
Q ss_pred HHhhhhc
Q 044681 155 QKLEDYE 161 (184)
Q Consensus 155 ~~l~~~~ 161 (184)
+.+.++.
T Consensus 326 ~ai~~ll 332 (365)
T TIGR00236 326 KAAKRLL 332 (365)
T ss_pred HHHHHHH
Confidence 9888765
No 181
>PRK08177 short chain dehydrogenase; Provisional
Probab=37.32 E-value=62 Score=25.78 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
|++|.|.|+++ -..+.+.+.|+++|+.|+.-+
T Consensus 1 ~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 1 KRTALIIGASR--------GLGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CCEEEEeCCCc--------hHHHHHHHHHHhCCCEEEEEe
Confidence 46788888875 266777888888898877544
No 182
>PRK07109 short chain dehydrogenase; Provisional
Probab=37.30 E-value=1.7e+02 Score=25.39 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=34.3
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
.++|.|.|+++ -..+++.+.|+++|+.|+.-+...--.+.+.+...+.|+++..+
T Consensus 8 ~k~vlITGas~--------gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v 62 (334)
T PRK07109 8 RQVVVITGASA--------GVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAV 62 (334)
T ss_pred CCEEEEECCCC--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 35788888876 36777888889999998765443122233333344456666555
No 183
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=37.19 E-value=2.2e+02 Score=23.33 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHC-C----CeEEEcCCCcc---hhHHHHHHHHhc--CCeEEEEecCccccccccCCCCceEeecCChHH
Q 044681 30 KAAIDLGNELVSK-G----LDLVYGGGNVG---LMGLISEEVHRG--RRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQ 99 (184)
Q Consensus 30 ~~A~~lG~~LA~~-G----~~lV~GGg~~G---lM~a~a~ga~~~--GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~ 99 (184)
+.|....+.++++ + -..+||+.++| |+-|++..+.+. +.+|+-+-.+.+.. + +.+....... +
T Consensus 17 ~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~-~-----~~~~~~~~~~-~ 89 (219)
T PF00308_consen 17 ELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR-E-----FADALRDGEI-E 89 (219)
T ss_dssp HHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH-H-----HHHHHHTTSH-H
T ss_pred HHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH-H-----HHHHHHcccc-h
Confidence 4555666666664 2 25778876666 888888888763 45666553222211 0 0000000111 1
Q ss_pred HHHHHHHhCCEEEE-----ecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 100 RKAEMARYADCFIV-----LPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 100 Rk~~m~~~sDa~Iv-----lPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.-.--.+.+|.+++ +.|--.|-+|+|..+.... .++|++++
T Consensus 90 ~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ 135 (219)
T PF00308_consen 90 EFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLIL 135 (219)
T ss_dssp HHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEE
T ss_pred hhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEE
Confidence 11112245666665 4566667889998886644 34788887
No 184
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=37.13 E-value=40 Score=28.36 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=28.9
Q ss_pred HHHhCCEEEEecCccccHHHHHHHHHHHHhC-----C-CCCCEEE
Q 044681 104 MARYADCFIVLPGGFGTLEKLFEVTTWSQLG-----V-HNKPVAI 142 (184)
Q Consensus 104 m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg-----~-~~kPvvl 142 (184)
+.+.+|++|+.|=.++||..++.-++-.-+. . .++|+++
T Consensus 93 La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~i 137 (209)
T PLN02496 93 LRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFV 137 (209)
T ss_pred hhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEE
Confidence 4456999999999999999988655433221 1 3689998
No 185
>PRK06455 riboflavin synthase; Provisional
Probab=36.97 E-value=1.4e+02 Score=23.99 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=35.9
Q ss_pred HhCCEEEEec--CccccHHHHHHHHHH--HHhCC-CCCCEEEEEEec---CCHHHHHHHhhh
Q 044681 106 RYADCFIVLP--GGFGTLEKLFEVTTW--SQLGV-HNKPVAIIMVSA---SNAKELVQKLED 159 (184)
Q Consensus 106 ~~sDa~IvlP--GG~GTL~El~~~l~~--~qlg~-~~kPvvl~i~~~---~~~~e~~~~l~~ 159 (184)
...|++|+|+ |..-|.+-+....+. +++.+ +++||+...++. .|++||.....+
T Consensus 55 ~~yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~t~~PVi~v~vhede~~~~~~l~~~~~~ 116 (155)
T PRK06455 55 EGCDIVMALGMPGPTEKDKYCAHEASIGLIMAQLMTNKHIIEVFVHEDEAKDEKELKELAED 116 (155)
T ss_pred CCCCEEEEecceeccCcchhHHHHHHHHHHHHHhhhCCCEEEEEecccccCCHHHHHHHHHH
Confidence 4689999987 777777666655543 35553 689999744443 567777665543
No 186
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=36.82 E-value=92 Score=24.39 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=12.5
Q ss_pred hHHHHHHHHhcCCeEEEEecC
Q 044681 56 MGLISEEVHRGRRHVLGIIPR 76 (184)
Q Consensus 56 M~a~a~ga~~~GG~viGviP~ 76 (184)
|+.+.+-..+.|..++|-.|.
T Consensus 100 ~~~l~~~l~~~G~~~ig~~~~ 120 (167)
T TIGR01752 100 MGILYDKIKARGAKVVGFWPT 120 (167)
T ss_pred HHHHHHHHHHcCCeEEceecC
Confidence 555555555567777776543
No 187
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=36.60 E-value=1.5e+02 Score=25.94 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=36.8
Q ss_pred HHHHHHHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhh
Q 044681 99 QRKAEMARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDY 160 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~ 160 (184)
+....+...||++|... .++|. =+.|+++. ++|||. .++-..|++++.+.|.+.
T Consensus 292 ~~~~~~l~~adv~v~~s~~e~~~~--~llEAmA~------G~PVIas~~~g~~e~i~~~~~G~lv~~~d~~~la~~i~~l 363 (396)
T cd03818 292 DQYLALLQVSDVHVYLTYPFVLSW--SLLEAMAC------GCLVVGSDTAPVREVITDGENGLLVDFFDPDALAAAVIEL 363 (396)
T ss_pred HHHHHHHHhCcEEEEcCcccccch--HHHHHHHC------CCCEEEcCCCCchhhcccCCceEEcCCCCHHHHHHHHHHH
Confidence 33445568899988643 34432 25666654 889988 333346899999998876
Q ss_pred cC
Q 044681 161 EP 162 (184)
Q Consensus 161 ~~ 162 (184)
..
T Consensus 364 l~ 365 (396)
T cd03818 364 LD 365 (396)
T ss_pred Hh
Confidence 53
No 188
>PF04722 Ssu72: Ssu72-like protein; InterPro: IPR006811 The highly conserved and essential protein Ssu72 has intrinsic phosphatase activity and plays an essential role in the transcription cycle. Ssu72 was originally identified in a yeast genetic screen as enhancer of a defect caused by a mutation in the transcription initiation factor TFIIB []. It binds to TFIIB and is also involved in mRNA elongation. Ssu72 is further involved in both poly(A) dependent and independent termination. It is a subunit of the yeast cleavage and polyadenylation factor (CPF), which is part of the machinery for mRNA 3'-end formation. Ssu72 is also essential for transcription termination of snRNAs [].; GO: 0004721 phosphoprotein phosphatase activity, 0006397 mRNA processing, 0005634 nucleus; PDB: 3O2S_B 3O2Q_E 3FMV_H 3OMW_D 3P9Y_B 3FDF_A 3OMX_A.
Probab=36.55 E-value=78 Score=26.49 Aligned_cols=34 Identities=26% Similarity=0.584 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV-YGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV-~GGg~ 52 (184)
.++||.|+|+-. ..-|-=+.|.++|+.|. ||-|.
T Consensus 2 l~~avVCasN~N-------RSMEAH~~L~~~G~~V~SfGTGs 36 (195)
T PF04722_consen 2 LRFAVVCASNQN-------RSMEAHNVLKKAGFNVRSFGTGS 36 (195)
T ss_dssp SEEEEEESSSSS-------HHHHHHHHHHHTT-EEEEEE-SS
T ss_pred ceEEEEccCCCC-------cCHHHHHHHHHCCCceEeecCCC
Confidence 479999999863 34444567889999999 56665
No 189
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=36.46 E-value=36 Score=27.92 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=26.7
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHhC-------CCCCCEEE
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQLG-------VHNKPVAI 142 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~qlg-------~~~kPvvl 142 (184)
.+|++|+.|=..+|+.-++.-++-.-+- ..++|+++
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii 120 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVL 120 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEE
Confidence 4899999999999999887654432221 24789988
No 190
>PRK06756 flavodoxin; Provisional
Probab=36.32 E-value=90 Score=23.62 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=6.8
Q ss_pred HHHHHHhcCCeEEE
Q 044681 59 ISEEVHRGRRHVLG 72 (184)
Q Consensus 59 ~a~ga~~~GG~viG 72 (184)
..+-..+.|..+++
T Consensus 106 l~~~l~~~g~~~v~ 119 (148)
T PRK06756 106 LIEKLQERGAAVVL 119 (148)
T ss_pred HHHHHHHCCCEEcC
Confidence 33344445655554
No 191
>PRK09330 cell division protein FtsZ; Validated
Probab=36.26 E-value=1.8e+02 Score=26.62 Aligned_cols=70 Identities=19% Similarity=0.332 Sum_probs=40.4
Q ss_pred HHHHCCCeEEE---cCC-CcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEE
Q 044681 38 ELVSKGLDLVY---GGG-NVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIV 113 (184)
Q Consensus 38 ~LA~~G~~lV~---GGg-~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Iv 113 (184)
.|-..+..+|+ ||| ++|.--.+++-|.+.|-.+++|.|..+. .|-. .....=..-...|.+.+|.+|+
T Consensus 94 ~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~-fEG~-------~r~~nA~~gL~~L~~~~D~vIv 165 (384)
T PRK09330 94 ALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFS-FEGK-------KRMKQAEEGIEELRKHVDTLIV 165 (384)
T ss_pred HHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCcc-ccch-------hHHHHHHHHHHHHHHHCCEEEE
Confidence 33334555554 333 2567778899999999999999863221 1100 0000112234456688999998
Q ss_pred ec
Q 044681 114 LP 115 (184)
Q Consensus 114 lP 115 (184)
+|
T Consensus 166 i~ 167 (384)
T PRK09330 166 IP 167 (384)
T ss_pred Ee
Confidence 87
No 192
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=36.11 E-value=69 Score=23.89 Aligned_cols=101 Identities=18% Similarity=0.101 Sum_probs=53.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCc---chhHHHHHHHHhcCCeEEEEecCccccccccCCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNV---GLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTL 88 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~---GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~ 88 (184)
|++.|+|+++ ...+++.+.++++|...|..-+.. .--....+.....+..+.-+ +-...
T Consensus 1 k~~lItGa~~--------giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~-~~D~~--------- 62 (167)
T PF00106_consen 1 KTVLITGASS--------GIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFI-ECDLS--------- 62 (167)
T ss_dssp EEEEEETTTS--------HHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEE-ESETT---------
T ss_pred CEEEEECCCC--------HHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccc-ccccc---------
Confidence 5788899886 478889999999965544444441 22222223233344433333 21110
Q ss_pred ceEeecCChHHHHHHHHHhCCEEEEecCccc-------cHHHHHHHHHHH
Q 044681 89 GEVKPVDHMHQRKAEMARYADCFIVLPGGFG-------TLEKLFEVTTWS 131 (184)
Q Consensus 89 ~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~G-------TL~El~~~l~~~ 131 (184)
+......+.++-..-...-|.+|...|... +.+++-..+..+
T Consensus 63 -~~~~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n 111 (167)
T PF00106_consen 63 -DPESIRALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVN 111 (167)
T ss_dssp -SHHHHHHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHH
T ss_pred -ccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence 000111222222222345689999999888 567776666554
No 193
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=35.81 E-value=49 Score=28.12 Aligned_cols=38 Identities=18% Similarity=0.057 Sum_probs=25.7
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 14 VCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 14 I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
|+|+||....+.+.=...++.+-+.|.+.||.++.-..
T Consensus 2 ~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~ 39 (315)
T TIGR01205 2 VAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDI 39 (315)
T ss_pred EEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEee
Confidence 55555555444443346899999999999998764433
No 194
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=35.74 E-value=1.5e+02 Score=26.44 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCC---hHHHHHH
Q 044681 27 CYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDH---MHQRKAE 103 (184)
Q Consensus 27 ~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~---~~~Rk~~ 103 (184)
...+..+.+++..-...+.+|+|+|..|. .+++.-.+.|-.++.|-.+...-.+.........++..+ ...-++.
T Consensus 216 ~l~~~~~~~~~~~~~~~~iiIiG~G~~g~--~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~ 293 (453)
T PRK09496 216 HIRAVMSEFGRLEKPVKRVMIVGGGNIGY--YLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEE 293 (453)
T ss_pred HHHHHHHHhCccCCCCCEEEEECCCHHHH--HHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhc
Confidence 34444455554333357889999987444 466655566777777732211100111111111223222 2333444
Q ss_pred HHHhCCEEEEecCcc
Q 044681 104 MARYADCFIVLPGGF 118 (184)
Q Consensus 104 m~~~sDa~IvlPGG~ 118 (184)
-++.+|++|++.+.-
T Consensus 294 ~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 294 GIDEADAFIALTNDD 308 (453)
T ss_pred CCccCCEEEECCCCc
Confidence 567789999988764
No 195
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=35.70 E-value=78 Score=27.74 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=25.6
Q ss_pred HhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 106 RYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 106 ~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
+..|+||++- |.-||+|.+..+++. +...+||||+
T Consensus 71 ~~~~GvVVtH-GTDTme~tA~~Ls~~-l~~l~kPVVl 105 (313)
T PF00710_consen 71 DDYDGVVVTH-GTDTMEETAFFLSLL-LDNLDKPVVL 105 (313)
T ss_dssp TTCSEEEEE---STTHHHHHHHHHHH-EES-SSEEEE
T ss_pred HhcCeEEEec-CchHHHHHHHHHHHH-hcCCCCCEEE
Confidence 4488998886 478999999998874 2333799998
No 196
>PRK00625 shikimate kinase; Provisional
Probab=35.66 E-value=1.3e+02 Score=23.99 Aligned_cols=78 Identities=22% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecC--ccccccccCCCC----ce-EeecCChHHHHHHHHH
Q 044681 34 DLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPR--ALMKKELTGVTL----GE-VKPVDHMHQRKAEMAR 106 (184)
Q Consensus 34 ~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~--~~~~~e~~~~~~----~~-~~~~~~~~~Rk~~m~~ 106 (184)
++-+.+...+..+.+|||. ++..-+...++.+|.|+-+-.. ....+ ....++ .. ..+-.-+..|....-+
T Consensus 65 ~~l~~l~~~~~VIs~GGg~--~~~~e~~~~l~~~~~Vv~L~~~~e~l~~R-l~~R~~~~~~~~~~~~~~ll~~R~~~Y~~ 141 (173)
T PRK00625 65 LALTSLPVIPSIVALGGGT--LMIEPSYAHIRNRGLLVLLSLPIATIYQR-LQKRGLPERLKHAPSLEEILSQRIDRMRS 141 (173)
T ss_pred HHHHHhccCCeEEECCCCc--cCCHHHHHHHhcCCEEEEEECCHHHHHHH-HhcCCCCcccCcHHHHHHHHHHHHHHHHH
Confidence 3334455566667788876 5555555567778888777421 11110 001111 01 1112335788888877
Q ss_pred hCCEEEEe
Q 044681 107 YADCFIVL 114 (184)
Q Consensus 107 ~sDa~Ivl 114 (184)
.||..|-.
T Consensus 142 ~ad~~i~~ 149 (173)
T PRK00625 142 IADYIFSL 149 (173)
T ss_pred HCCEEEeC
Confidence 79987643
No 197
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=35.47 E-value=1.3e+02 Score=24.99 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=35.7
Q ss_pred HHHHHHhCCEEEEec---CccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhh
Q 044681 101 KAEMARYADCFIVLP---GGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDY 160 (184)
Q Consensus 101 k~~m~~~sDa~IvlP---GG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~ 160 (184)
..-++..||++|.-. -|+|+ =++|+++. ++|||. .++-.+|++++.+.|...
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~--~l~EA~a~------G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~l~~~i~~~ 327 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGR--TAVEAQAM------GRPVIASDHGGARETVRPGETGLLVPPGDAEALAQALDQI 327 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCch--HHHHHHhc------CCCEEEcCCCCcHHHHhCCCceEEeCCCCHHHHHHHHHHH
Confidence 445567899987643 34553 36677765 889988 455568999999998643
No 198
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=35.36 E-value=98 Score=28.65 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=27.5
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.|+|||.-| .=||+|-+.+|+++- ..+|||||
T Consensus 153 ~dGvVVtHG-TDTM~yTA~aLs~~l--~~~kPVVl 184 (419)
T PRK04183 153 ADGVVVAHG-TDTMHYTAAALSFML--KTPVPIVF 184 (419)
T ss_pred CCeEEEecC-CchHHHHHHHHHHhc--CCCCCEEE
Confidence 799999985 789999999998855 35899999
No 199
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.33 E-value=2.5e+02 Score=24.79 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=23.0
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLD 45 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~ 45 (184)
+..+++|+++.-.. ++...+.++++.++|.++|+.
T Consensus 2 ~~~~~~I~iv~~~~---~~~~~~~~~~l~~~L~~~g~~ 36 (306)
T PRK03372 2 MTASRRVLLVAHTG---RDEATEAARRVAKQLGDAGIG 36 (306)
T ss_pred CCCccEEEEEecCC---CHHHHHHHHHHHHHHHHCCCE
Confidence 35567899996432 345557788888877665543
No 200
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=35.13 E-value=1.1e+02 Score=25.68 Aligned_cols=42 Identities=12% Similarity=0.239 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 30 KAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 30 ~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
..++++++.|-.+|..+|+.... +. .+.+.|.+.|..+||+-
T Consensus 166 ~~a~~~a~~l~~~G~DvI~~~~~-~~--g~~~aa~~~g~~~IG~d 207 (258)
T cd06353 166 AKEKEAALALIDQGADVIYQHTD-SP--GVIQAAEEKGVYAIGYV 207 (258)
T ss_pred HHHHHHHHHHHHCCCcEEEecCC-Ch--HHHHHHHHhCCEEEeec
Confidence 46677888888899999987742 32 34455778899999994
No 201
>PRK07454 short chain dehydrogenase; Provisional
Probab=35.13 E-value=83 Score=25.18 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
.++++.|.|+++ ...+.+.+.|+++|+.|+.-.-.
T Consensus 5 ~~k~vlItG~sg--------~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITGASS--------GIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999875 36777888888899887754443
No 202
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=35.04 E-value=99 Score=27.50 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=28.0
Q ss_pred HhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 106 RYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 106 ~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
+..|+|||.-| .=||+|-+..|++.- ...+||||+
T Consensus 80 ~~~dG~VVtHG-TDTmeeTA~~L~~~l-~~~~kPVVl 114 (335)
T PRK09461 80 DDYDGFVILHG-TDTMAYTASALSFML-ENLGKPVIV 114 (335)
T ss_pred ccCCeEEEeec-cchHHHHHHHHHHHH-hCCCCCEEE
Confidence 45799999975 789999999998743 224799999
No 203
>PRK12743 oxidoreductase; Provisional
Probab=34.69 E-value=2.5e+02 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=18.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
++|.|.|+++. ..+++.+.|+++|+.++.
T Consensus 3 k~vlItGas~g--------iG~~~a~~l~~~G~~V~~ 31 (256)
T PRK12743 3 QVAIVTASDSG--------IGKACALLLAQQGFDIGI 31 (256)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEE
Confidence 45666666542 455666667777777754
No 204
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=34.69 E-value=1.2e+02 Score=27.31 Aligned_cols=51 Identities=24% Similarity=0.271 Sum_probs=34.7
Q ss_pred HhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhhh
Q 044681 106 RYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDY 160 (184)
Q Consensus 106 ~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~~ 160 (184)
..=|.+|++||+.||..=+.-.++ +++. +.+|| .+-+..+++.+-+.+.+.
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~~--~~~~-~~~Vi-G~~v~~~~~~~~~qv~~L 229 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGLA--QLGP-DVEVI-GIDVSADPEKLKEQVLNL 229 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHhh--hccC-CCceE-EEeecCCHHHHHHHHHHH
Confidence 345899999999999877766553 4443 45655 455566787777766653
No 205
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=34.52 E-value=1.4e+02 Score=20.69 Aligned_cols=34 Identities=18% Similarity=0.049 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
.+.+.++.-.-. ++...=.++++.|+++||.++.
T Consensus 15 ~k~~v~i~HG~~----eh~~ry~~~a~~L~~~G~~V~~ 48 (79)
T PF12146_consen 15 PKAVVVIVHGFG----EHSGRYAHLAEFLAEQGYAVFA 48 (79)
T ss_pred CCEEEEEeCCcH----HHHHHHHHHHHHHHhCCCEEEE
Confidence 456666665443 3444556788889999999985
No 206
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=34.44 E-value=40 Score=29.59 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHh
Q 044681 32 AIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHR 65 (184)
Q Consensus 32 A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~ 65 (184)
-++|+|.|..+...||.+|| |+=+.+.-|+++
T Consensus 4 ~~rl~r~l~~~~~gLvL~GG--G~RG~ahiGvL~ 35 (306)
T cd07225 4 FSRLARVLTGNSIALVLGGG--GARGCAHIGVIK 35 (306)
T ss_pred HHHHHHHhcCCCEEEEECCh--HHHHHHHHHHHH
Confidence 35789999999999999886 567777767666
No 207
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=34.39 E-value=93 Score=26.31 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
||+++++|-.+. -..|++.+++.||.++.|+..
T Consensus 1 m~~~~i~GtGni---------G~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 1 MMIIAIIGTGNI---------GSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred CcEEEEeccChH---------HHHHHHHHHhCCCeEEEecCC
Confidence 678888887654 457888999999999999766
No 208
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=34.34 E-value=1.7e+02 Score=23.80 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=36.6
Q ss_pred HHHHHHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE--------------EEEecCCHHHHHHHhhhhcC
Q 044681 100 RKAEMARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI--------------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 100 Rk~~m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl--------------~i~~~~~~~e~~~~l~~~~~ 162 (184)
...-+...||++|.-. .|+|+- +.|+++. ++|++. .++..++++++.+.|.+...
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~--~~Eama~------G~PvI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 344 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIV--VAEALAC------GTPVVTTDKVPWQELIEYGCGWVVDDDVDALAAALRRALE 344 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcH--HHHHHhc------CCCEEEcCCCCHHHHhhcCceEEeCCChHHHHHHHHHHHh
Confidence 3444567799987644 455542 6666654 789988 34556677888888887643
No 209
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=34.33 E-value=70 Score=31.15 Aligned_cols=42 Identities=21% Similarity=0.436 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcchhHH
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV-YGGGNVGLMGL 58 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV-~GGg~~GlM~a 58 (184)
-.|+|+||| |+.|.+.+.++.+.|.+.|-..| .=|-+ +-|+.
T Consensus 547 a~i~viCss----D~~Y~~~a~~~~~al~~ag~~~v~lAG~p-~~~~~ 589 (619)
T TIGR00642 547 AQVAVLCSS----DKVYAQQGLEVAKALKAAGAKALYLAGAF-KEFGD 589 (619)
T ss_pred CCEEEEeCC----CcchHHHHHHHHHHHHhCCCCEEEEeCCC-cchhh
Confidence 469999987 55899999999999977665433 34444 55664
No 210
>PRK08267 short chain dehydrogenase; Provisional
Probab=34.20 E-value=73 Score=25.88 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=20.6
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
|+++.|.|+++ -..+.+.+.|+++|+.++.
T Consensus 1 mk~vlItGasg--------~iG~~la~~l~~~G~~V~~ 30 (260)
T PRK08267 1 MKSIFITGAAS--------GIGRATALLFAAEGWRVGA 30 (260)
T ss_pred CcEEEEeCCCc--------hHHHHHHHHHHHCCCeEEE
Confidence 45677777765 2566777777778877663
No 211
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=34.13 E-value=1e+02 Score=25.70 Aligned_cols=40 Identities=13% Similarity=-0.107 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHH----CCCeEE---EcCCCc---chhHHHHHHHHhcCC
Q 044681 29 RKAAIDLGNELVS----KGLDLV---YGGGNV---GLMGLISEEVHRGRR 68 (184)
Q Consensus 29 ~~~A~~lG~~LA~----~G~~lV---~GGg~~---GlM~a~a~ga~~~GG 68 (184)
.++|+.+|.+||+ .|+.-| -||... |-.-|+++||.++|=
T Consensus 79 ~~AAy~vG~llA~ral~kGi~~vvfDrGg~~yh~gGRV~A~akgArd~GL 128 (193)
T PRK08569 79 TPAAYLTGLLAGKKALKAGVEEAVLDIGLHRPTKGSRVFAALKGAIDAGL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCCccccCCccHHHHHHHHHHcCC
Confidence 4678888888887 465544 366542 889999999999774
No 212
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=33.58 E-value=1.7e+02 Score=25.51 Aligned_cols=83 Identities=13% Similarity=-0.016 Sum_probs=41.5
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCcccccccc-CCCCceEeecCChHHHHHHHHHhCCEEEEecCccccH
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELT-GVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTL 121 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~-~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL 121 (184)
...+|.|.|+.|++ +.+-|+..|.+++.+..+.....+.. .-..+.++...+- ++-..+....|.+|=.-|+..|+
T Consensus 185 ~~VlV~G~G~vG~~--avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~-~~~~~~~~~~D~vid~~g~~~~~ 261 (360)
T PLN02586 185 KHLGVAGLGGLGHV--AVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDP-EKMKAAIGTMDYIIDTVSAVHAL 261 (360)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCH-HHHHhhcCCCCEEEECCCCHHHH
Confidence 45666776665655 45557777888877653321111110 0111222211211 11111122358888888877788
Q ss_pred HHHHHHH
Q 044681 122 EKLFEVT 128 (184)
Q Consensus 122 ~El~~~l 128 (184)
++.+..+
T Consensus 262 ~~~~~~l 268 (360)
T PLN02586 262 GPLLGLL 268 (360)
T ss_pred HHHHHHh
Confidence 7776654
No 213
>PRK09271 flavodoxin; Provisional
Probab=33.50 E-value=82 Score=24.50 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDL 46 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 46 (184)
|+|.|+.+|..++ -.+.|+.+.+.|.++|+.+
T Consensus 1 mkv~IvY~S~tGn---Te~~A~~ia~~l~~~g~~v 32 (160)
T PRK09271 1 MRILLAYASLSGN---TREVAREIEERCEEAGHEV 32 (160)
T ss_pred CeEEEEEEcCCch---HHHHHHHHHHHHHhCCCee
Confidence 3566666667663 3357888888888888876
No 214
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=33.48 E-value=1.3e+02 Score=26.44 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=43.6
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCC-eEEEEecCccccccccCCCC-ceEeecC---ChHHHHHHHHH--hCCEEEEec
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRR-HVLGIIPRALMKKELTGVTL-GEVKPVD---HMHQRKAEMAR--YADCFIVLP 115 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG-~viGviP~~~~~~e~~~~~~-~~~~~~~---~~~~Rk~~m~~--~sDa~IvlP 115 (184)
+..+|.|.|+.|||-+ ..|...|. ++|-+ .......+.+.... .+..... +-..+...+.. -+|.+|-.-
T Consensus 170 ~~V~V~GaGpIGLla~--~~a~~~Ga~~Viv~-d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 170 GTVVVVGAGPIGLLAI--ALAKLLGASVVIVV-DRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CEEEEECCCHHHHHHH--HHHHHcCCceEEEe-CCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 4689999999999983 34555553 44544 21222233333322 1222221 12222222222 379999998
Q ss_pred CccccHHHHHHHH
Q 044681 116 GGFGTLEKLFEVT 128 (184)
Q Consensus 116 GG~GTL~El~~~l 128 (184)
|-.-+++....+.
T Consensus 247 G~~~~~~~ai~~~ 259 (350)
T COG1063 247 GSPPALDQALEAL 259 (350)
T ss_pred CCHHHHHHHHHHh
Confidence 8666666655544
No 215
>PRK06194 hypothetical protein; Provisional
Probab=33.38 E-value=2.1e+02 Score=23.46 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
++|.|.|+++. ..+++.+.|+++|+.|+.-+.
T Consensus 7 k~vlVtGasgg--------IG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 7 KVAVITGAASG--------FGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CEEEEeCCccH--------HHHHHHHHHHHCCCEEEEEeC
Confidence 67888888762 567778888889998775443
No 216
>PRK14557 pyrH uridylate kinase; Provisional
Probab=33.31 E-value=69 Score=27.27 Aligned_cols=44 Identities=30% Similarity=0.529 Sum_probs=24.4
Q ss_pred cCCceEEE-EcCCCCCCCh---HHHHHHHHHHHHHH---HCC--CeEEEcCCC
Q 044681 9 SRFKRVCV-FCGSSPDYKY---CYRKAAIDLGNELV---SKG--LDLVYGGGN 52 (184)
Q Consensus 9 ~~~~~I~V-fggs~~~~~~---~~~~~A~~lG~~LA---~~G--~~lV~GGg~ 52 (184)
++.++|.+ |||+....+. .-.+..+++.+.|+ +.| ..||.|||.
T Consensus 2 ~~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn 54 (247)
T PRK14557 2 RPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGN 54 (247)
T ss_pred CcccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcH
Confidence 34455555 8888865421 11234555555555 345 457788864
No 217
>PRK06182 short chain dehydrogenase; Validated
Probab=33.01 E-value=2.7e+02 Score=22.73 Aligned_cols=11 Identities=18% Similarity=0.150 Sum_probs=8.5
Q ss_pred hCCEEEEecCc
Q 044681 107 YADCFIVLPGG 117 (184)
Q Consensus 107 ~sDa~IvlPGG 117 (184)
.-|.+|-..|.
T Consensus 74 ~id~li~~ag~ 84 (273)
T PRK06182 74 RIDVLVNNAGY 84 (273)
T ss_pred CCCEEEECCCc
Confidence 46899988874
No 218
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=32.97 E-value=89 Score=23.47 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=18.4
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDL 46 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 46 (184)
||.+.|.||.+. +..-.+.++.+.+.+.+.|+.+
T Consensus 1 Mkilii~gS~r~--~~~t~~l~~~~~~~l~~~g~e~ 34 (152)
T PF03358_consen 1 MKILIINGSPRK--NSNTRKLAEAVAEQLEEAGAEV 34 (152)
T ss_dssp -EEEEEESSSST--TSHHHHHHHHHHHHHHHTTEEE
T ss_pred CEEEEEECcCCC--CCHHHHHHHHHHHHHHHcCCEE
Confidence 344455555443 2344467777777776665444
No 219
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=32.79 E-value=3.7e+02 Score=24.22 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHH
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEE 62 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~g 62 (184)
+++|+|+|+.+.+ ..|+..|+++|+.+.-=+....++...+..
T Consensus 1 ~~kI~ViGaGswG---------TALA~~la~ng~~V~lw~r~~~~~~~i~~~ 43 (329)
T COG0240 1 MMKIAVIGAGSWG---------TALAKVLARNGHEVRLWGRDEEIVAEINET 43 (329)
T ss_pred CceEEEEcCChHH---------HHHHHHHHhcCCeeEEEecCHHHHHHHHhc
Confidence 4789999998754 468889999998776444444788776665
No 220
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=32.75 E-value=33 Score=29.69 Aligned_cols=30 Identities=30% Similarity=0.575 Sum_probs=23.6
Q ss_pred HHHHHHHHCCCeEEEcCCCcchhHHHHHHHHh
Q 044681 34 DLGNELVSKGLDLVYGGGNVGLMGLISEEVHR 65 (184)
Q Consensus 34 ~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~ 65 (184)
+|+|.|+.+...||.+|| |.=+++.-|+++
T Consensus 1 rlar~l~g~~igLVL~GG--GaRG~ahiGVL~ 30 (269)
T cd07227 1 RLARRLCGQAIGLVLGGG--GARGISHIGILQ 30 (269)
T ss_pred ChhhHhcCCCEEEEECCc--HHHHHHHHHHHH
Confidence 378889999999999887 566777667666
No 221
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=32.51 E-value=1.1e+02 Score=25.83 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=19.8
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDL 46 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 46 (184)
+.++++|.+++||... ++--...++.+.+.+...|+.+
T Consensus 23 ~~~~~kI~~I~GSlR~-~S~n~~la~~~~~~~~~~g~~v 60 (219)
T TIGR02690 23 KPHIPRILLLYGSLRE-RSYSRLLAEEAARLLGCEGRET 60 (219)
T ss_pred CCCCCEEEEEECCCCC-cchHHHHHHHHHHHHhhcCCEE
Confidence 3445566666655432 3333456666666555455544
No 222
>PRK08105 flavodoxin; Provisional
Probab=32.40 E-value=1e+02 Score=23.92 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=14.0
Q ss_pred EEcCCC------cchhHHHHHHHHhcCCeEEEE
Q 044681 47 VYGGGN------VGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 47 V~GGg~------~GlM~a~a~ga~~~GG~viGv 73 (184)
|+|-|. .+.+..+-+-..+.|+..++-
T Consensus 89 vfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~ 121 (149)
T PRK08105 89 VIALGDSSYDNFCGAGKQFDALLQEQGAKRVGE 121 (149)
T ss_pred EEeeecCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 456665 233333444444477776663
No 223
>PRK07334 threonine dehydratase; Provisional
Probab=32.22 E-value=3.8e+02 Score=24.15 Aligned_cols=53 Identities=15% Similarity=0.019 Sum_probs=36.9
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhhhc
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~~~ 161 (184)
+..+++++||-=+.+-+...+ +..+...+.|+-|.+...+.+..+.+.+....
T Consensus 296 ~~vv~i~~ggn~d~~~l~~il-~~~l~~~~y~v~l~I~~~dr~GlL~dI~~~is 348 (403)
T PRK07334 296 RKVGLVLSGGNIDTRLLANVL-LRGLVRAGRLARLRVDIRDRPGALARVTALIG 348 (403)
T ss_pred CeEEEEECCCCCCHHHHHHHH-HHHHHhCCCEEEEEEEeCCCCCHHHHHHHHHh
Confidence 358999999854455444444 33666677888888888888887777776553
No 224
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=32.12 E-value=1.2e+02 Score=24.79 Aligned_cols=64 Identities=25% Similarity=0.226 Sum_probs=35.1
Q ss_pred eEEEcCCCcchhHHH-HHHHHhcCCeEEEEecCccccccccCCCCceEeec---CChHHHHHHHHHhCCEEEE
Q 044681 45 DLVYGGGNVGLMGLI-SEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPV---DHMHQRKAEMARYADCFIV 113 (184)
Q Consensus 45 ~lV~GGg~~GlM~a~-a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~---~~~~~Rk~~m~~~sDa~Iv 113 (184)
+.++=-.. |-|+.+ ++.+...|..|+=|.-.. ..+.++..+.+.+ .+|.+.-.-.+..+|++|.
T Consensus 21 R~ItN~SS-G~~G~~lA~~~~~~Ga~V~li~g~~----~~~~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~ 88 (185)
T PF04127_consen 21 RFITNRSS-GKMGAALAEEAARRGAEVTLIHGPS----SLPPPPGVKVIRVESAEEMLEAVKELLPSADIIIM 88 (185)
T ss_dssp EEEEES---SHHHHHHHHHHHHTT-EEEEEE-TT----S----TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE
T ss_pred eEecCCCc-CHHHHHHHHHHHHCCCEEEEEecCc----cccccccceEEEecchhhhhhhhccccCcceeEEE
Confidence 34444444 999975 788888999998886321 1112222344443 4556666666677788775
No 225
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.08 E-value=69 Score=27.74 Aligned_cols=107 Identities=18% Similarity=0.125 Sum_probs=60.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEV 91 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~ 91 (184)
|+|+|+.-. + ++.-.+.++++.++|.++|+.+..--.. +...+ .. . . .. .
T Consensus 1 m~v~iv~~~--~-k~~~~~~~~~I~~~L~~~g~~v~v~~~~----------~~~~~--------~~----~--~--~~-~ 50 (277)
T PRK03708 1 MRFGIVARR--D-KEEALKLAYRVYDFLKVSGYEVVVDSET----------YEHLP--------EF----S--E--ED-V 50 (277)
T ss_pred CEEEEEecC--C-CHHHHHHHHHHHHHHHHCCCEEEEecch----------hhhcC--------cc----c--c--cc-c
Confidence 468888533 3 3455678999999999999988763211 00000 00 0 0 00 0
Q ss_pred eecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-------EEEecCCHHHHHHHhhhhcCCC
Q 044681 92 KPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-------IMVSASNAKELVQKLEDYEPSH 164 (184)
Q Consensus 92 ~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-------~i~~~~~~~e~~~~l~~~~~~~ 164 (184)
.... ....|. |+.-||=||+.+.+. +. ..+.|++. ++. .-+++++.+.|+++....
T Consensus 51 ---~~~~------~~~~d~-vi~iGGDGTlL~a~~-~~-----~~~~pi~gIn~G~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 51 ---LPLE------EMDVDF-IIAIGGDGTILRIEH-KT-----KKDIPILGINMGTLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred ---cccc------ccCCCE-EEEEeCcHHHHHHHH-hc-----CCCCeEEEEeCCCCCccc-cCCHHHHHHHHHHHHcCC
Confidence 0000 113574 455588999999887 32 23678775 222 235888888888876554
Q ss_pred C
Q 044681 165 D 165 (184)
Q Consensus 165 ~ 165 (184)
+
T Consensus 114 ~ 114 (277)
T PRK03708 114 Y 114 (277)
T ss_pred c
Confidence 3
No 226
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=32.07 E-value=1e+02 Score=22.92 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
|.|+|++... +.+ -...|..|++.||++|..+++
T Consensus 1 k~i~v~s~~~-g~G--~t~~a~~lA~~la~~~~~Vll 34 (157)
T PF13614_consen 1 KVIAVWSPKG-GVG--KTTLALNLAAALARKGKKVLL 34 (157)
T ss_dssp EEEEEEESST-TSS--HHHHHHHHHHHHHHTTT-EEE
T ss_pred CEEEEECCCC-CCC--HHHHHHHHHHHHHhcCCCeEE
Confidence 4688888543 222 235789999999999866543
No 227
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=31.96 E-value=1.1e+02 Score=25.44 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHCCCeEE-EcCCCcchhHHHHHHHHhcCCeEEEEecCccc------cccccCCCCceEeecCChHHHHHH
Q 044681 31 AAIDLGNELVSKGLDLV-YGGGNVGLMGLISEEVHRGRRHVLGIIPRALM------KKELTGVTLGEVKPVDHMHQRKAE 103 (184)
Q Consensus 31 ~A~~lG~~LA~~G~~lV-~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~------~~e~~~~~~~~~~~~~~~~~Rk~~ 103 (184)
.|-.|.++==+.|-.++ -|.|. |-+..-.- ..--.++|+.|= ... .+......+..+.+...-. -..
T Consensus 23 Ral~ls~L~~~~g~~l~DIGaGt-Gsi~iE~a-~~~p~~~v~AIe--~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~ 96 (187)
T COG2242 23 RALTLSKLRPRPGDRLWDIGAGT-GSITIEWA-LAGPSGRVIAIE--RDEEALELIERNAARFGVDNLEVVEGDA--PEA 96 (187)
T ss_pred HHHHHHhhCCCCCCEEEEeCCCc-cHHHHHHH-HhCCCceEEEEe--cCHHHHHHHHHHHHHhCCCcEEEEeccc--hHh
Confidence 34444554444677777 57766 76665433 445678999992 211 0011112244344432221 112
Q ss_pred HHH--hCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhhh
Q 044681 104 MAR--YADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDY 160 (184)
Q Consensus 104 m~~--~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~~ 160 (184)
+-. .-|+ |++.|| |+++++++++.. .|.. .--+|.-.+.-++.-.+++++++.
T Consensus 97 L~~~~~~da-iFIGGg-~~i~~ile~~~~-~l~~-ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 97 LPDLPSPDA-IFIGGG-GNIEEILEAAWE-RLKP-GGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred hcCCCCCCE-EEECCC-CCHHHHHHHHHH-HcCc-CCeEEEEeecHHHHHHHHHHHHHc
Confidence 223 2454 445666 999999997644 3222 123444555455666666666654
No 228
>PRK12361 hypothetical protein; Provisional
Probab=31.88 E-value=71 Score=30.01 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=30.1
Q ss_pred EEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------EE-Eec---CCHHHHHHHhhh
Q 044681 111 FIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------IM-VSA---SNAKELVQKLED 159 (184)
Q Consensus 111 ~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------~i-~~~---~~~~e~~~~l~~ 159 (184)
.|+.-||=||++|+...+.- ++.|+.+ .+ -.. .|++++++.|.+
T Consensus 300 ~Viv~GGDGTl~ev~~~l~~-----~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~ 358 (547)
T PRK12361 300 IVIACGGDGTVTEVASELVN-----TDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQ 358 (547)
T ss_pred EEEEECCCcHHHHHHHHHhc-----CCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHh
Confidence 45668999999999987742 3456665 23 122 378888888765
No 229
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.81 E-value=2.4e+02 Score=24.56 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=39.3
Q ss_pred cccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC----------------------------CeEEEcCCCcchhHH
Q 044681 7 AKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKG----------------------------LDLVYGGGNVGLMGL 58 (184)
Q Consensus 7 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G----------------------------~~lV~GGg~~GlM~a 58 (184)
.+..+++|+|+.-.. +...+.++++.++|.++| +.++.| |. |-|=-
T Consensus 6 ~~~~~~~i~ii~~~~----~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iG-GD-GT~L~ 79 (287)
T PRK14077 6 DHKNIKKIGLVTRPN----VSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLG-GD-GTLIS 79 (287)
T ss_pred ccccCCEEEEEeCCc----HHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEEC-CC-HHHHH
Confidence 456688899996432 255677888888876555 223334 45 77666
Q ss_pred HHHHHHhcCCeEEEE
Q 044681 59 ISEEVHRGRRHVLGI 73 (184)
Q Consensus 59 ~a~ga~~~GG~viGv 73 (184)
+++-+...+-.++||
T Consensus 80 aa~~~~~~~~PilGI 94 (287)
T PRK14077 80 LCRKAAEYDKFVLGI 94 (287)
T ss_pred HHHHhcCCCCcEEEE
Confidence 666565566678887
No 230
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=31.57 E-value=58 Score=28.01 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=16.2
Q ss_pred eEEEcCCCcchhHHHHHHHHhcCCeEE
Q 044681 45 DLVYGGGNVGLMGLISEEVHRGRRHVL 71 (184)
Q Consensus 45 ~lV~GGg~~GlM~a~a~ga~~~GG~vi 71 (184)
.|+|||+. |+=-+.++...+.|..||
T Consensus 8 iLITGG~s-GIGl~lak~f~elgN~VI 33 (245)
T COG3967 8 ILITGGAS-GIGLALAKRFLELGNTVI 33 (245)
T ss_pred EEEeCCcc-hhhHHHHHHHHHhCCEEE
Confidence 34566655 666666666666666654
No 231
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.51 E-value=3e+02 Score=25.97 Aligned_cols=82 Identities=16% Similarity=0.065 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHCC-CeEEEcCCC--cchhHHHHHHHHhcCCeEE------EEecCccccccccCCCCceEeecCChHHH
Q 044681 30 KAAIDLGNELVSKG-LDLVYGGGN--VGLMGLISEEVHRGRRHVL------GIIPRALMKKELTGVTLGEVKPVDHMHQR 100 (184)
Q Consensus 30 ~~A~~lG~~LA~~G-~~lV~GGg~--~GlM~a~a~ga~~~GG~vi------GviP~~~~~~e~~~~~~~~~~~~~~~~~R 100 (184)
+...++.++|.+.. -.|+.|+|- .|..+++.+=|-+.|-.|+ |++|+. |+.+.-..-...-..-
T Consensus 194 ~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~-------hp~~~G~~G~~~~~~~ 266 (572)
T PRK08979 194 GQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGT-------HKNSLGMLGMHGRYEA 266 (572)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCC-------CcccccCCccCCCHHH
Confidence 34555666777755 555566654 2777777766666777666 333321 2222111101111233
Q ss_pred HHHHHHhCCEEEEecCccc
Q 044681 101 KAEMARYADCFIVLPGGFG 119 (184)
Q Consensus 101 k~~m~~~sDa~IvlPGG~G 119 (184)
+. .++.||.+|+++--++
T Consensus 267 ~~-~~~~aD~vl~vG~~~~ 284 (572)
T PRK08979 267 NM-AMHNADLIFGIGVRFD 284 (572)
T ss_pred HH-HHHhCCEEEEEcCCCC
Confidence 33 4578999999886543
No 232
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=31.50 E-value=2.2e+02 Score=23.26 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
+++.|.|+++. ..+++.+.|+++|+.|+.-+..
T Consensus 11 k~vlVtGas~g--------iG~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 11 KVAVITGGGGV--------LGGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEeCC
Confidence 67888887762 6677788888899988765543
No 233
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=3.1e+02 Score=24.12 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=59.4
Q ss_pred HHhcCCeEEEEecCccccccccCCCCc--eEeecCChHHHHHH-HHHhCCEEEEecCcccc-HHHHHHHHHHHHh-----
Q 044681 63 VHRGRRHVLGIIPRALMKKELTGVTLG--EVKPVDHMHQRKAE-MARYADCFIVLPGGFGT-LEKLFEVTTWSQL----- 133 (184)
Q Consensus 63 a~~~GG~viGviP~~~~~~e~~~~~~~--~~~~~~~~~~Rk~~-m~~~sDa~IvlPGG~GT-L~El~~~l~~~ql----- 133 (184)
.++.|-.-+.++|.-... +++.+. .-++.+.|-.|-.. -.+.+|.++|.+ .|+ |-|+.....+.++
T Consensus 151 ~~qhg~~~tsviPtNvfG---phDNfnpe~sHVlPali~r~h~ak~~gtd~~~VwG--sG~PlRqFiys~DLA~l~i~vl 225 (315)
T KOG1431|consen 151 RQQHGRDYTSVIPTNVFG---PHDNFNPENSHVLPALIHRFHEAKRNGTDELTVWG--SGSPLRQFIYSDDLADLFIWVL 225 (315)
T ss_pred HHHhCCceeeeccccccC---CCCCCCcccccchHHHHHHHHHHHhcCCceEEEec--CCChHHHHhhHhHHHHHHHHHH
Confidence 345777889999976543 233221 12333333333322 234467777764 444 4444444433332
Q ss_pred -CC-CCCCEEEEEEe--cCCHHHHHHHhhhhcCCCCCccccccccccccCCC
Q 044681 134 -GV-HNKPVAIIMVS--ASNAKELVQKLEDYEPSHDGVVAKAEWDAEKAEAS 181 (184)
Q Consensus 134 -g~-~~kPvvl~i~~--~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 181 (184)
.+ ---||++..-. .-++.|+.+.+.+...- ...+.|+..|+.|+
T Consensus 226 r~Y~~vEpiils~ge~~EVtI~e~aeaV~ea~~F----~G~l~~DttK~DGq 273 (315)
T KOG1431|consen 226 REYEGVEPIILSVGESDEVTIREAAEAVVEAVDF----TGKLVWDTTKSDGQ 273 (315)
T ss_pred HhhcCccceEeccCccceeEHHHHHHHHHHHhCC----CceEEeeccCCCCC
Confidence 22 23688883222 23567777777764333 34589999998875
No 234
>PRK09004 FMN-binding protein MioC; Provisional
Probab=31.35 E-value=1.3e+02 Score=23.17 Aligned_cols=8 Identities=13% Similarity=0.219 Sum_probs=3.8
Q ss_pred hcCCeEEE
Q 044681 65 RGRRHVLG 72 (184)
Q Consensus 65 ~~GG~viG 72 (184)
+.|+..++
T Consensus 111 ~lGa~~v~ 118 (146)
T PRK09004 111 AKGAKQIG 118 (146)
T ss_pred HcCCeEee
Confidence 35554444
No 235
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=31.27 E-value=2.8e+02 Score=22.30 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
.+++.|.|+++ ...+.+.+.|+++|+.++.-+..
T Consensus 9 ~k~~lItGas~--------giG~~ia~~L~~~G~~vvl~~r~ 42 (254)
T PRK08085 9 GKNILITGSAQ--------GIGFLLATGLAEYGAEIIINDIT 42 (254)
T ss_pred CCEEEEECCCC--------hHHHHHHHHHHHcCCEEEEEcCC
Confidence 35788888775 36777888888889888765544
No 236
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=31.14 E-value=86 Score=25.13 Aligned_cols=31 Identities=13% Similarity=-0.017 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYG 49 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~G 49 (184)
+++|.|.|+++. ....+.+.|+++|+.++.-
T Consensus 2 ~k~ilItGas~g--------iG~~la~~l~~~g~~v~~~ 32 (248)
T PRK06947 2 RKVVLITGASRG--------IGRATAVLAAARGWSVGIN 32 (248)
T ss_pred CcEEEEeCCCCc--------HHHHHHHHHHHCCCEEEEE
Confidence 457888888762 5667788888899888643
No 237
>PRK05993 short chain dehydrogenase; Provisional
Probab=30.93 E-value=99 Score=25.64 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=0.0
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
++.+++|.|.|+++ -..+.+++.|+++|+.|+
T Consensus 1 m~~~k~vlItGasg--------giG~~la~~l~~~G~~Vi 32 (277)
T PRK05993 1 MDMKRSILITGCSS--------GIGAYCARALQSDGWRVF 32 (277)
T ss_pred CCCCCEEEEeCCCc--------HHHHHHHHHHHHCCCEEE
No 238
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=30.93 E-value=1e+02 Score=24.49 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
++|.|.|+++ ...+.+++.|+++|+.++.-.-.
T Consensus 3 k~vlItG~s~--------~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 3 KIALVTGAKR--------GIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHcCCEEEEEeCC
Confidence 4778888766 36777888888899988776554
No 239
>PRK13946 shikimate kinase; Provisional
Probab=30.71 E-value=2.7e+02 Score=21.91 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=17.8
Q ss_pred HHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 39 LVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 39 LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
+.+.+-.+|.+||. ..+...++..+..++.+|-+
T Consensus 76 l~~~~~~Vi~~ggg-~~~~~~~r~~l~~~~~~v~L 109 (184)
T PRK13946 76 LLKGGPLVLATGGG-AFMNEETRAAIAEKGISVWL 109 (184)
T ss_pred HHhcCCeEEECCCC-CcCCHHHHHHHHcCCEEEEE
Confidence 44444455555554 44555555555556655554
No 240
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=30.05 E-value=50 Score=30.65 Aligned_cols=39 Identities=31% Similarity=0.442 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cchhHHHHHHHHhcCC
Q 044681 30 KAAIDLGNELVSKGLDLVYGGGN----------VGLMGLISEEVHRGRR 68 (184)
Q Consensus 30 ~~A~~lG~~LA~~G~~lV~GGg~----------~GlM~a~a~ga~~~GG 68 (184)
+-|+.|++.|.++|+.+|+||=. .|+-+..+..+++.-+
T Consensus 291 ~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~~~~Gk~ae~~L~~~~ 339 (413)
T COG0112 291 KNAKALAEALKERGFKVVSGGTDNHLVLVDLRSKGLTGKKAEAALERAG 339 (413)
T ss_pred HHHHHHHHHHHHcCCeEecCCccceEEEEEcccCCCCHHHHHHHHHHcC
Confidence 45788888899999999998743 2666777777777544
No 241
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.99 E-value=1.8e+02 Score=31.06 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=40.4
Q ss_pred ceEEEEcCCCCCC-ChHHHHHHHH-HHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcC
Q 044681 12 KRVCVFCGSSPDY-KYCYRKAAID-LGNELVSKGLDLVYGGGNVGLMGLISEEVHRGR 67 (184)
Q Consensus 12 ~~I~Vfggs~~~~-~~~~~~~A~~-lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~G 67 (184)
-.|.|-||...-. .|.+.+.-++ |-+..-..|-=|+|||-.+|+|.=|..++++++
T Consensus 119 LvISV~GG~~nF~L~pkl~~~frkGLvkaAqtTGAWIiTsG~~tGv~khVg~Al~dh~ 176 (1381)
T KOG3614|consen 119 LVISVHGGLQNFELQPKLKSVFRKGLIKAAQTTGAWIITSGLDTGVMKHVGSALRDHS 176 (1381)
T ss_pred EEEEEecCCCCccccHHHHHHHHHHHHHHHhhcCeEEEecCcccchHHHHHHHHHhcc
Confidence 4799999887432 3444443333 333333379999999999999999999999964
No 242
>PRK08226 short chain dehydrogenase; Provisional
Probab=29.98 E-value=2.7e+02 Score=22.44 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
+++.|.|+++. ..+.+.+.|+++|+.++.=+.. .-.....+...+.+.++..+
T Consensus 7 ~~~lItG~s~g--------iG~~la~~l~~~G~~Vv~~~r~-~~~~~~~~~~~~~~~~~~~~ 59 (263)
T PRK08226 7 KTALITGALQG--------IGEGIARVFARHGANLILLDIS-PEIEKLADELCGRGHRCTAV 59 (263)
T ss_pred CEEEEeCCCCh--------HHHHHHHHHHHCCCEEEEecCC-HHHHHHHHHHHHhCCceEEE
No 243
>PRK12937 short chain dehydrogenase; Provisional
Probab=29.96 E-value=1e+02 Score=24.56 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
-++|.|.|+++ -..+.+++.|+++|+.++.-.
T Consensus 5 ~~~vlItG~~~--------~iG~~la~~l~~~g~~v~~~~ 36 (245)
T PRK12937 5 NKVAIVTGASR--------GIGAAIARRLAADGFAVAVNY 36 (245)
T ss_pred CCEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEec
Confidence 36888888876 267788888899999876433
No 244
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=29.86 E-value=2.6e+02 Score=24.91 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCEEEEe-cC--ccccHHHHHHHHHHHHhCCCCCCEEE---------------EEEecCCHHHHHHHhhh
Q 044681 98 HQRKAEMARYADCFIVL-PG--GFGTLEKLFEVTTWSQLGVHNKPVAI---------------IMVSASNAKELVQKLED 159 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~Ivl-PG--G~GTL~El~~~l~~~qlg~~~kPvvl---------------~i~~~~~~~e~~~~l~~ 159 (184)
.+...-+...||++|.+ +. |.|--.-++|+++. ++||+. .+.+ +|++++.+.|.+
T Consensus 305 ~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~------G~PVI~s~~~~~~eiv~~~~~G~lv-~d~~~la~~i~~ 377 (415)
T cd03816 305 AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGC------GLPVCALDFKCIDELVKHGENGLVF-GDSEELAEQLID 377 (415)
T ss_pred HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHc------CCCEEEeCCCCHHHHhcCCCCEEEE-CCHHHHHHHHHH
Confidence 34445567889999853 21 23334456777764 899988 3333 589999999987
Q ss_pred hcC
Q 044681 160 YEP 162 (184)
Q Consensus 160 ~~~ 162 (184)
...
T Consensus 378 ll~ 380 (415)
T cd03816 378 LLS 380 (415)
T ss_pred HHh
Confidence 644
No 245
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=29.83 E-value=75 Score=24.42 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|.|+|.|.+..+. ...++.|-+.|.++|+.+.
T Consensus 1 pvv~VvG~~~sGK----TTl~~~Li~~l~~~g~~v~ 32 (140)
T PF03205_consen 1 PVVQVVGPKNSGK----TTLIRKLINELKRRGYRVA 32 (140)
T ss_dssp -EEEEEESTTSSH----HHHHHHHHHHHHHTT--EE
T ss_pred CEEEEECCCCCCH----HHHHHHHHHHHhHcCCceE
Confidence 5788999887762 2467888888888888776
No 246
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.77 E-value=3.3e+02 Score=23.47 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC---------eEEEcCCCcchhHHHHHHHHh--cCCeEEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGL---------DLVYGGGNVGLMGLISEEVHR--GRRHVLGI 73 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~---------~lV~GGg~~GlM~a~a~ga~~--~GG~viGv 73 (184)
|+|+|+. + . ++...+.+.++-++|.++|+ .++.|| . |-|=-+++-+.. .+-.++||
T Consensus 1 M~i~Ii~--~-~-~~~~~~~~~~l~~~l~~~g~~~~~~~~Dlvi~iGG-D-GT~L~a~~~~~~~~~~iPilGI 67 (265)
T PRK04885 1 MKVAIIS--N-G-DPKSKRVASKLKKYLKDFGFILDEKNPDIVISVGG-D-GTLLSAFHRYENQLDKVRFVGV 67 (265)
T ss_pred CEEEEEe--C-C-CHHHHHHHHHHHHHHHHcCCccCCcCCCEEEEECC-c-HHHHHHHHHhcccCCCCeEEEE
Confidence 3588884 3 2 45666788999888877654 344555 5 666655555544 45566776
No 247
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.66 E-value=63 Score=28.75 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=21.9
Q ss_pred CCCeEEEcCCCcchhHHHHHHHHhcCCeE
Q 044681 42 KGLDLVYGGGNVGLMGLISEEVHRGRRHV 70 (184)
Q Consensus 42 ~G~~lV~GGg~~GlM~a~a~ga~~~GG~v 70 (184)
.+..|+||||. |+=.+.+....+.|..+
T Consensus 38 g~~vLITGgg~-GlGr~ialefa~rg~~~ 65 (300)
T KOG1201|consen 38 GEIVLITGGGS-GLGRLIALEFAKRGAKL 65 (300)
T ss_pred CCEEEEeCCCc-hHHHHHHHHHHHhCCeE
Confidence 57778888887 88888888888877744
No 248
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=29.51 E-value=1.4e+02 Score=22.19 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=16.9
Q ss_pred CEEEEecCccccHHHH---HHHHHHH-HhCCCCCCEEE
Q 044681 109 DCFIVLPGGFGTLEKL---FEVTTWS-QLGVHNKPVAI 142 (184)
Q Consensus 109 Da~IvlPGG~GTL~El---~~~l~~~-qlg~~~kPvvl 142 (184)
|+ |++|||.+....+ -....|. +...+.|||..
T Consensus 64 D~-liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~a 100 (142)
T cd03132 64 DA-VVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGA 100 (142)
T ss_pred CE-EEECCCccCHHHHccChHHHHHHHHHHhcCCeEEE
Confidence 55 5567887765421 1122232 22346788866
No 249
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=29.43 E-value=1.7e+02 Score=25.59 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=35.3
Q ss_pred HHHhCCEEEEec-CccccHHHHHHHHHHHHhCCCCCCEEE--------------EEEecCCHHHHHHHhhhhcC
Q 044681 104 MARYADCFIVLP-GGFGTLEKLFEVTTWSQLGVHNKPVAI--------------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 104 m~~~sDa~IvlP-GG~GTL~El~~~l~~~qlg~~~kPvvl--------------~i~~~~~~~e~~~~l~~~~~ 162 (184)
....||++|+-- =+-|+-.-+.|+++. ++|||. .+.+.+|++++.+.|.+...
T Consensus 294 ~~~~adv~v~Ps~~~eG~~~~~lEAma~------G~PVV~t~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~ 361 (397)
T TIGR03087 294 YLAHAAVAVAPLRIARGIQNKVLEAMAM------AKPVVASPEAAEGIDALPGAELLVAADPADFAAAILALLA 361 (397)
T ss_pred HHHhCCEEEecccccCCcccHHHHHHHc------CCCEEecCcccccccccCCcceEeCCCHHHHHHHHHHHHc
Confidence 457899987521 122333457777765 788877 33445899999999987653
No 250
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=29.32 E-value=3.9e+02 Score=24.96 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE-EcCCCcchhHHHHHHHHhcCCeEEEEecCcccccc
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV-YGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKE 82 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV-~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e 82 (184)
++|+|+||. |..... +..|+++||.++ ++- ..+-||...-=||++..+.+
T Consensus 124 ~~VaviGaG-----PAGl~~----a~~L~~~G~~Vtv~e~------------~~~~GGll~yGIP~~kl~k~ 174 (457)
T COG0493 124 KKVAVIGAG-----PAGLAA----ADDLSRAGHDVTVFER------------VALDGGLLLYGIPDFKLPKD 174 (457)
T ss_pred CEEEEECCC-----chHhhh----HHHHHhCCCeEEEeCC------------cCCCceeEEecCchhhccch
Confidence 799999974 344333 445678898886 332 23566666544788776643
No 251
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=29.18 E-value=99 Score=26.99 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCC--eEEEEecC
Q 044681 31 AAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRR--HVLGIIPR 76 (184)
Q Consensus 31 ~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG--~viGviP~ 76 (184)
.+.|+-+.+....+.++..|++ |+...++++.++.+. +++||=|.
T Consensus 157 ~a~Ei~~q~~~~d~vvv~~G~G-g~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 157 LGLEVVEQMPDLATVLVPLSGG-GLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred HHHHHHHhCCCCCEEEEEcChh-HHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 3444444333234566666666 999999999988654 79999774
No 252
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=29.15 E-value=2e+02 Score=23.00 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=31.1
Q ss_pred HHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHH---HHHhhhhc
Q 044681 104 MARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKEL---VQKLEDYE 161 (184)
Q Consensus 104 m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~---~~~l~~~~ 161 (184)
+...||++|.-. .|+|+ =+.|+++. ++|++. .+.-.++++++ ++.+.+..
T Consensus 260 ~~~~~d~~i~ps~~e~~~~--~~~Ea~~~------G~PvI~~~~~~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 330 (353)
T cd03811 260 YLKAADLFVLSSRYEGFPN--VLLEAMAL------GTPVVATDCPGPREILEDGENGLLVPVGDEAALAAAALALLDLL 330 (353)
T ss_pred HHHhCCEEEeCcccCCCCc--HHHHHHHh------CCCEEEcCCCChHHHhcCCCceEEECCCCHHHHHHHHHHHHhcc
Confidence 567799887643 23443 26667765 889988 44445677777 55555543
No 253
>PRK05693 short chain dehydrogenase; Provisional
Probab=29.14 E-value=93 Score=25.60 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
||++.|.|+++ -..+.+.+.|+++|+.|+.-+
T Consensus 1 mk~vlItGasg--------giG~~la~~l~~~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGCSS--------GIGRALADAFKAAGYEVWATA 32 (274)
T ss_pred CCEEEEecCCC--------hHHHHHHHHHHHCCCEEEEEe
Confidence 46777888765 256667777788888877433
No 254
>PLN02271 serine hydroxymethyltransferase
Probab=29.13 E-value=55 Score=31.76 Aligned_cols=40 Identities=33% Similarity=0.379 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cchhHHHHHHHHhcCCe
Q 044681 30 KAAIDLGNELVSKGLDLVYGGGN----------VGLMGLISEEVHRGRRH 69 (184)
Q Consensus 30 ~~A~~lG~~LA~~G~~lV~GGg~----------~GlM~a~a~ga~~~GG~ 69 (184)
+-|+.|++.|.++||.||+||-. .|+-+..+.-+++.-|.
T Consensus 442 ~NAkaLA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I 491 (586)
T PLN02271 442 KNAQALASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHI 491 (586)
T ss_pred HHHHHHHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCe
Confidence 45677888888999999998832 36677777777775553
No 255
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=29.11 E-value=3.1e+02 Score=22.24 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
+++.|.|+++ -..+++.+.|+++|+.++.-...
T Consensus 11 k~~lItGa~~--------~iG~~ia~~l~~~G~~vv~~~~~ 43 (265)
T PRK07097 11 KIALITGASY--------GIGFAIAKAYAKAGATIVFNDIN 43 (265)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCeEEEEeCC
Confidence 6788888775 25678888889999998866543
No 256
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=28.93 E-value=81 Score=24.18 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
..++|+|+|..+.+ ..||+.|.+.||.++
T Consensus 9 ~~l~I~iIGaGrVG---------~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 9 ARLKIGIIGAGRVG---------TALARALARAGHEVV 37 (127)
T ss_dssp ---EEEEECTSCCC---------CHHHHHHHHTTSEEE
T ss_pred CccEEEEECCCHHH---------HHHHHHHHHCCCeEE
Confidence 35699999998865 468888899999875
No 257
>PLN02275 transferase, transferring glycosyl groups
Probab=28.92 E-value=3e+02 Score=24.04 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCEEEEec-C--ccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 98 HQRKAEMARYADCFIVLP-G--GFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlP-G--G~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.+.-.-+...||++|... . +.|--.-+.|+++. ++||+.
T Consensus 297 ~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~------G~PVVa 338 (371)
T PLN02275 297 AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGC------GLPVCA 338 (371)
T ss_pred HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHC------CCCEEE
Confidence 344455678899998631 2 23334456777764 899987
No 258
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=28.81 E-value=66 Score=23.90 Aligned_cols=38 Identities=26% Similarity=0.224 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
..++.+|||..+..-.. |...++.+-+.|.+.|..++.
T Consensus 86 ~~~~~avfg~Gd~~~~~-f~~~~k~l~~~l~~~G~~~~~ 123 (143)
T PF00258_consen 86 KGKKYAVFGLGDSGYGG-FCAAAKKLDERLEELGAKRVG 123 (143)
T ss_dssp TTCEEEEEEEEETTSST-TTHHHHHHHHHHHHTTEEEES
T ss_pred ccceeeeeecCCccchh-hhhHHHHHHHHHHHCCCEEEE
Confidence 34677777544333233 888899999999999888875
No 259
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=28.79 E-value=2.9e+02 Score=23.75 Aligned_cols=59 Identities=15% Similarity=0.181 Sum_probs=36.1
Q ss_pred HHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE-----------------EEEecCCHHHHHHHhhhhc
Q 044681 99 QRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI-----------------IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl-----------------~i~~~~~~~e~~~~l~~~~ 161 (184)
+...-+...+|++|.-.-.-|.--=+.|+++. ++||+. .++-.+|++++.+.|.++.
T Consensus 249 ~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~------G~Pvv~s~~~~g~~eiv~~~~~G~lv~~~d~~~la~~i~~l~ 322 (359)
T PRK09922 249 EVVQQKIKNVSALLLTSKFEGFPMTLLEAMSY------GIPCISSDCMSGPRDIIKPGLNGELYTPGNIDEFVGKLNKVI 322 (359)
T ss_pred HHHHHHHhcCcEEEECCcccCcChHHHHHHHc------CCCEEEeCCCCChHHHccCCCceEEECCCCHHHHHHHHHHHH
Confidence 33444456788888543311222235555543 788877 3444579999999999875
Q ss_pred CC
Q 044681 162 PS 163 (184)
Q Consensus 162 ~~ 163 (184)
..
T Consensus 323 ~~ 324 (359)
T PRK09922 323 SG 324 (359)
T ss_pred hC
Confidence 43
No 260
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.74 E-value=2.4e+02 Score=20.80 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHH
Q 044681 26 YCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMA 105 (184)
Q Consensus 26 ~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~ 105 (184)
+.|.--..-+...|..+||.+++=|.. ==.+.+.+.+.+.+-.++++- .... . + ......+- +.+-
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~-vp~e~~~~~a~~~~~d~V~iS--~~~~-----~-~--~~~~~~~~---~~L~ 75 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLR-QTPEEIVEAAIQEDVDVIGLS--SLSG-----G-H--MTLFPEVI---ELLR 75 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEc--ccch-----h-h--HHHHHHHH---HHHH
Confidence 455445555666788899999998876 334677778888899999983 2110 0 0 00011111 1111
Q ss_pred Hh-C-CEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhh
Q 044681 106 RY-A-DCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLED 159 (184)
Q Consensus 106 ~~-s-Da~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~ 159 (184)
+. - +..|+++| ...-++.. .+.+.|... .+.-..++++++.+|++
T Consensus 76 ~~~~~~i~i~~GG-~~~~~~~~---~~~~~G~d~-----~~~~~~~~~~~~~~~~~ 122 (122)
T cd02071 76 ELGAGDILVVGGG-IIPPEDYE---LLKEMGVAE-----IFGPGTSIEEIIDKIRD 122 (122)
T ss_pred hcCCCCCEEEEEC-CCCHHHHH---HHHHCCCCE-----EECCCCCHHHHHHHHhC
Confidence 11 2 44444544 44444432 234555322 45556889999988864
No 261
>PRK06180 short chain dehydrogenase; Provisional
Probab=28.61 E-value=84 Score=26.02 Aligned_cols=34 Identities=18% Similarity=0.027 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
+++|.|.|+++ -..+.+.+.|+++|+.|+..+..
T Consensus 4 ~~~vlVtGasg--------giG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 4 MKTWLITGVSS--------GFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCEEEEecCCC--------hHHHHHHHHHHhCcCEEEEEeCC
Confidence 35677888765 25666777777788887765543
No 262
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=28.59 E-value=1.2e+02 Score=24.17 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
+.+.|.|+++ -..+.+++.|+++|+.++...+.
T Consensus 4 k~~lVtG~s~--------giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 4 RIAYVTGGMG--------GIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CEEEEECCCC--------hHHHHHHHHHHHcCCEEEEEcCC
No 263
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=28.53 E-value=95 Score=28.08 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=25.9
Q ss_pred CEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 109 DCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 109 Da~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
|+||+.-| .=||+|-+..|+++--. +|||||
T Consensus 102 dGvVItHG-TDTmeeTA~~L~l~l~~--~kPVVl 132 (351)
T COG0252 102 DGVVITHG-TDTMEETAFFLSLTLNT--PKPVVL 132 (351)
T ss_pred CeEEEeCC-CchHHHHHHHHHHHhcC--CCCEEE
Confidence 88888874 67999999999886533 899999
No 264
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.52 E-value=2.3e+02 Score=24.17 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=32.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe----------------EEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLD----------------LVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~----------------lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
|+++|| .++ .-.+.+.++-++|.++|+. +++=||. |-|=-+++-. +-.++||-
T Consensus 1 m~~~~~--~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGD-GT~L~a~~~~---~~Pilgin 69 (256)
T PRK14075 1 MKLGIF--YRE----EKEKEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGD-GTVLKAAKKV---GTPLVGFK 69 (256)
T ss_pred CEEEEE--eCc----cHHHHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCc-HHHHHHHHHc---CCCEEEEe
Confidence 467777 222 2346788888888877642 3333556 7776555544 67788883
No 265
>PRK06179 short chain dehydrogenase; Provisional
Probab=28.38 E-value=1.2e+02 Score=24.78 Aligned_cols=32 Identities=22% Similarity=0.118 Sum_probs=0.0
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
+...+.|.|.|+++ -..+++.+.|+++|+.|+
T Consensus 1 m~~~~~vlVtGasg--------~iG~~~a~~l~~~g~~V~ 32 (270)
T PRK06179 1 MSNSKVALVTGASS--------GIGRATAEKLARAGYRVF 32 (270)
T ss_pred CCCCCEEEEecCCC--------HHHHHHHHHHHHCCCEEE
No 266
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=28.36 E-value=61 Score=26.70 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=33.5
Q ss_pred HHHHHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE--------------EEEecCCHHHHHHHhhhhc
Q 044681 101 KAEMARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI--------------IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 101 k~~m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl--------------~i~~~~~~~e~~~~l~~~~ 161 (184)
..-+...||++|.-. .|+|.- ++|++.. ++||+. .++..+|++++.+.|.++.
T Consensus 266 ~~~~~~~~d~~l~ps~~e~~~~~--~~Ea~a~------G~pvI~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~l~ 334 (365)
T cd03809 266 LAALYRGARAFVFPSLYEGFGLP--VLEAMAC------GTPVIASNISSLPEVAGDAALYFDPLDPEALAAAIERLL 334 (365)
T ss_pred HHHHHhhhhhhcccchhccCCCC--HHHHhcC------CCcEEecCCCCccceecCceeeeCCCCHHHHHHHHHHHh
Confidence 344557788665332 122221 5666654 789888 4555678999999999854
No 267
>PRK07102 short chain dehydrogenase; Provisional
Probab=28.36 E-value=84 Score=25.21 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
|++|.|.|+++ -....+.+.|+++|+.|+.-+
T Consensus 1 ~~~vlItGas~--------giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 1 MKKILIIGATS--------DIARACARRYAAAGARLYLAA 32 (243)
T ss_pred CcEEEEEcCCc--------HHHHHHHHHHHhcCCEEEEEe
Confidence 45677777665 245666666777777765433
No 268
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=28.36 E-value=3.5e+02 Score=23.02 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=35.4
Q ss_pred HHHHHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE---------------EEEecCCHHHHHHHhhhhcC
Q 044681 101 KAEMARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI---------------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 101 k~~m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl---------------~i~~~~~~~e~~~~l~~~~~ 162 (184)
..-+...||+++..+ -|+|.. +.|+++. ++||+. .+....|++++.+.|.+...
T Consensus 293 ~~~~l~~ad~~l~~s~~E~~g~~--~lEAma~------G~PvI~s~~~~~~e~i~~~~~g~~~~~~~~~~a~~i~~l~~ 363 (392)
T cd03805 293 KELLLSSARALLYTPSNEHFGIV--PLEAMYA------GKPVIACNSGGPLETVVDGETGFLCEPTPEEFAEAMLKLAN 363 (392)
T ss_pred HHHHHhhCeEEEECCCcCCCCch--HHHHHHc------CCCEEEECCCCcHHHhccCCceEEeCCCHHHHHHHHHHHHh
Confidence 345668899988644 334432 4566654 789887 34445689999888887543
No 269
>PRK06953 short chain dehydrogenase; Provisional
Probab=28.34 E-value=1.1e+02 Score=24.25 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=18.3
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYG 49 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~G 49 (184)
|+++.|.|+++. ..+.+.+.|+++|+.++.=
T Consensus 1 ~~~vlvtG~sg~--------iG~~la~~L~~~G~~v~~~ 31 (222)
T PRK06953 1 MKTVLIVGASRG--------IGREFVRQYRADGWRVIAT 31 (222)
T ss_pred CceEEEEcCCCc--------hhHHHHHHHHhCCCEEEEE
Confidence 346666676552 4555666666677766543
No 270
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=28.31 E-value=1e+02 Score=28.48 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=31.9
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHh
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKL 157 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l 157 (184)
.+.+|++-|| +|..|+..+..+.+.-..++.|++.=...-++.++++.|
T Consensus 516 ~~viVf~vGG-vTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 516 KRVIVFFVGG-VTYSEIRALRELSKKLGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp SEEEEEEETE-BEHHHHHHHHHHHTTSSSSSEEEEEESSBE-HHHHHHHH
T ss_pred CEEEEEEEcC-CcHHHHHHHHHHHHhhCCCcEEEEEeCCccCHHHHHHhC
Confidence 4588888888 599999988877653222367776433334677776653
No 271
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=28.29 E-value=1.3e+02 Score=25.02 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=21.2
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCC--CeEEEcCCC
Q 044681 17 FCGSSPDYKYCYRKAAIDLGNELVSKG--LDLVYGGGN 52 (184)
Q Consensus 17 fggs~~~~~~~~~~~A~~lG~~LA~~G--~~lV~GGg~ 52 (184)
|||+...+.+...+.++.+.++. +.| ..+|.||+.
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l~-~~g~~~vvV~sg~g 42 (239)
T cd04261 6 FGGTSVASIERIKRVAERIKKRK-KKGNQVVVVVSAMG 42 (239)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH-HcCCCEEEEECCCC
Confidence 88888764444555566666543 444 557778754
No 272
>PRK07677 short chain dehydrogenase; Provisional
Probab=28.28 E-value=92 Score=25.20 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=19.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
+++.|.|+++. ..+.+++.|+++|+.|+.-+
T Consensus 2 k~~lItG~s~g--------iG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGGSSG--------MGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeCCCCh--------HHHHHHHHHHHCCCEEEEEe
Confidence 45666676652 55666666677777765443
No 273
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=28.21 E-value=39 Score=30.94 Aligned_cols=17 Identities=41% Similarity=0.815 Sum_probs=12.3
Q ss_pred eEEEcCCCcchhHHHHH
Q 044681 45 DLVYGGGNVGLMGLISE 61 (184)
Q Consensus 45 ~lV~GGg~~GlM~a~a~ 61 (184)
.+|-|||++|+|-|..-
T Consensus 3 viIIGgGaAGl~aA~~a 19 (409)
T PF03486_consen 3 VIIIGGGAAGLMAAITA 19 (409)
T ss_dssp EEEE--SHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHH
Confidence 46789999999998765
No 274
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=28.16 E-value=1.1e+02 Score=23.50 Aligned_cols=81 Identities=16% Similarity=0.180 Sum_probs=43.0
Q ss_pred HHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCc--cccc---cccCCCCceE----eecCChHHHHHHHH
Q 044681 35 LGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRA--LMKK---ELTGVTLGEV----KPVDHMHQRKAEMA 105 (184)
Q Consensus 35 lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~--~~~~---e~~~~~~~~~----~~~~~~~~Rk~~m~ 105 (184)
|.+.+.+++..|.||||- ++..-++..+...|.||-+--+. +..+ ....+.+.+. .....+..|.....
T Consensus 55 l~~l~~~~~~VIa~GGG~--~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~ 132 (158)
T PF01202_consen 55 LRELLKENNCVIACGGGI--VLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYE 132 (158)
T ss_dssp HHHHHCSSSEEEEE-TTG--GGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcEEEeCCCCC--cCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence 333444457788888875 66666777888899999884211 1110 0011111111 11233347777777
Q ss_pred HhCCEEEEecCc
Q 044681 106 RYADCFIVLPGG 117 (184)
Q Consensus 106 ~~sDa~IvlPGG 117 (184)
..+|.+|-.-+.
T Consensus 133 ~~a~~~v~~~~~ 144 (158)
T PF01202_consen 133 QAADIVVDTDGS 144 (158)
T ss_dssp HHSSEEEETSSC
T ss_pred hcCeEEEeCCCC
Confidence 777777655443
No 275
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=28.15 E-value=1e+02 Score=25.10 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|+|.|.|+++ -..+++++.|+++|+.++
T Consensus 1 m~vlItGas~--------gIG~aia~~l~~~G~~V~ 28 (259)
T PRK08340 1 MNVLVTASSR--------GIGFNVARELLKKGARVV 28 (259)
T ss_pred CeEEEEcCCc--------HHHHHHHHHHHHcCCEEE
No 276
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=27.98 E-value=1e+02 Score=26.58 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=22.4
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCCeEEEEec
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIP 75 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP 75 (184)
...+|+|+|+.|+| +.+-|+..|.+|+.+..
T Consensus 167 ~~VlV~G~g~iG~~--a~~~a~~~G~~vi~~~~ 197 (329)
T TIGR02822 167 GRLGLYGFGGSAHL--TAQVALAQGATVHVMTR 197 (329)
T ss_pred CEEEEEcCCHHHHH--HHHHHHHCCCeEEEEeC
Confidence 46788998666654 55677888888888754
No 277
>PRK06139 short chain dehydrogenase; Provisional
Probab=27.89 E-value=2.7e+02 Score=24.24 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=32.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
++|.|.|+|+ -..+++.+.|+++|+.|+.-+-..--.+.+.+...+.|+.+..+
T Consensus 8 k~vlITGAs~--------GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~ 61 (330)
T PRK06139 8 AVVVITGASS--------GIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVV 61 (330)
T ss_pred CEEEEcCCCC--------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEE
Confidence 5778888765 26777888889999998865543122222333334455555443
No 278
>PRK07478 short chain dehydrogenase; Provisional
Probab=27.78 E-value=3.2e+02 Score=21.92 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred cccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 7 AKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 7 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
++-..+++.|.|+++- ..+++.+.|+++|+.++.-+....=-+.+..-..+.++.+..+
T Consensus 2 ~~~~~k~~lItGas~g--------iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 60 (254)
T PRK07478 2 MRLNGKVAIITGASSG--------IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVAL 60 (254)
T ss_pred CCCCCCEEEEeCCCCh--------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEE
No 279
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=27.74 E-value=1.1e+02 Score=20.75 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.1
Q ss_pred ecCCHHHHHHHhhhhcCC
Q 044681 146 SASNAKELVQKLEDYEPS 163 (184)
Q Consensus 146 ~~~~~~e~~~~l~~~~~~ 163 (184)
..+|++|+.+.+..+...
T Consensus 45 ~~~~~~el~~~i~~ll~~ 62 (92)
T PF13524_consen 45 TYNDPEELAEKIEYLLEN 62 (92)
T ss_pred EECCHHHHHHHHHHHHCC
Confidence 345999999999987643
No 280
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=27.72 E-value=93 Score=26.68 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=30.1
Q ss_pred hCCEEEEe-cCcc-ccHHHHHHHHHHHHhCCCCCCEEE-------E-EEecCCHHHHHHHhhhhc
Q 044681 107 YADCFIVL-PGGF-GTLEKLFEVTTWSQLGVHNKPVAI-------I-MVSASNAKELVQKLEDYE 161 (184)
Q Consensus 107 ~sDa~Ivl-PGG~-GTL~El~~~l~~~qlg~~~kPvvl-------~-i~~~~~~~e~~~~l~~~~ 161 (184)
..|++|.= .|+. |+.+-+--+.. + +.||++ . ....+|++|+++++++..
T Consensus 197 ~i~~lVtK~SG~~Gg~~eKi~AA~~---l---gi~vivI~RP~~~~~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 197 RIDAVVTKASGEQGGELEKVKAAEA---L---GINVIRIARPQTIPGVAIFDDISQLNQFVARLL 255 (256)
T ss_pred CCCEEEEcCCCCccchHHHHHHHHH---c---CCcEEEEeCCCCCCCCccCCCHHHHHHHHHHhc
Confidence 35655553 3777 55555544443 3 455555 1 244589999999998753
No 281
>PLN02740 Alcohol dehydrogenase-like
Probab=27.51 E-value=2.2e+02 Score=24.93 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=43.0
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCC-eEEEEecCccccccccC-CCCceEeecC----ChHHHHHHHHH-hCCEEEEec
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRR-HVLGIIPRALMKKELTG-VTLGEVKPVD----HMHQRKAEMAR-YADCFIVLP 115 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG-~viGviP~~~~~~e~~~-~~~~~~~~~~----~~~~Rk~~m~~-~sDa~IvlP 115 (184)
...+|.|+|+.|++ +.+-|+..|. +|+.+..+.. ..+... -..+.++-.. ++.++-..+.. ..|.++=..
T Consensus 200 ~~VlV~G~G~vG~~--a~q~ak~~G~~~Vi~~~~~~~-r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~ 276 (381)
T PLN02740 200 SSVAIFGLGAVGLA--VAEGARARGASKIIGVDINPE-KFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA 276 (381)
T ss_pred CEEEEECCCHHHHH--HHHHHHHCCCCcEEEEcCChH-HHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence 56788887766665 4455667777 5888753221 111110 0111222211 13322222222 368888778
Q ss_pred CccccHHHHHHHH
Q 044681 116 GGFGTLEKLFEVT 128 (184)
Q Consensus 116 GG~GTL~El~~~l 128 (184)
|+..++++.+..+
T Consensus 277 G~~~~~~~a~~~~ 289 (381)
T PLN02740 277 GNVEVLREAFLST 289 (381)
T ss_pred CChHHHHHHHHhh
Confidence 8777777766654
No 282
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.43 E-value=1.6e+02 Score=18.34 Aligned_cols=50 Identities=12% Similarity=0.343 Sum_probs=34.2
Q ss_pred EEEecCccccHHHHHHHHHHHHhCCC------CCC--EEEEEEecCCHHHHHHHhhhh
Q 044681 111 FIVLPGGFGTLEKLFEVTTWSQLGVH------NKP--VAIIMVSASNAKELVQKLEDY 160 (184)
Q Consensus 111 ~IvlPGG~GTL~El~~~l~~~qlg~~------~kP--vvl~i~~~~~~~e~~~~l~~~ 160 (184)
.|.+|...|.|.++..++.-.+.++. ..+ .....+..++.+++.+.|++.
T Consensus 3 ~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~~ 60 (65)
T cd04882 3 AVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQER 60 (65)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHHC
Confidence 47889999999999998877655431 111 112344456799999988863
No 283
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=27.39 E-value=1.3e+02 Score=24.08 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|+.++|.|.+..|.. -..+++-+.|.++|+.+-
T Consensus 2 ~~Il~ivG~k~SGKT----TLie~lv~~L~~~G~rVa 34 (161)
T COG1763 2 MKILGIVGYKNSGKT----TLIEKLVRKLKARGYRVA 34 (161)
T ss_pred CcEEEEEecCCCChh----hHHHHHHHHHHhCCcEEE
Confidence 678888888887632 345566666677776543
No 284
>PRK08589 short chain dehydrogenase; Validated
Probab=27.35 E-value=3.3e+02 Score=22.35 Aligned_cols=53 Identities=8% Similarity=-0.012 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
+++.|.|+++ -..+++++.|+++|+.++.-+.. ---+...+...+.++++..+
T Consensus 7 k~vlItGas~--------gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~ 59 (272)
T PRK08589 7 KVAVITGAST--------GIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAY 59 (272)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEE
No 285
>PRK05876 short chain dehydrogenase; Provisional
Probab=27.27 E-value=2.8e+02 Score=23.06 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
+++.|.|+++. ..+++++.|+++|+.|+.-+..
T Consensus 7 k~vlVTGas~g--------IG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 7 RGAVITGGASG--------IGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCEEEEEeCC
Confidence 56778887752 5677888888999988755433
No 286
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.16 E-value=1.2e+02 Score=24.59 Aligned_cols=45 Identities=16% Similarity=-0.014 Sum_probs=32.6
Q ss_pred ccccccCCceEEEEcCCCCCCC--------hHHHHHHHHHHHHHHHCCCeEEE
Q 044681 4 KKEAKSRFKRVCVFCGSSPDYK--------YCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 4 ~~~~~~~~~~I~Vfggs~~~~~--------~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
|.+.+++...+-||||++.-.. +.=.+-++..-+.|.++|+.|+.
T Consensus 81 ~~Ga~~~~l~aKifGGA~m~~~~~~~~~~~~IG~rNi~~a~~~L~~~gi~i~a 133 (167)
T PRK13498 81 ANGTPPEDYQVKLFGGGNMFPELQQDLHTLNVADKNIHAALALAEQNGLHLKA 133 (167)
T ss_pred HcCCCHHHEEEEEEECcccccccccCcccCChHHHHHHHHHHHHHHCCCcEEE
Confidence 4556667789999999985431 23456666667789999999993
No 287
>PRK09134 short chain dehydrogenase; Provisional
Probab=27.12 E-value=1.2e+02 Score=24.53 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=25.4
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
+...+++.|.|+++ -..+++.+.|+++|+.++.-.
T Consensus 6 ~~~~k~vlItGas~--------giG~~la~~l~~~g~~v~~~~ 40 (258)
T PRK09134 6 MAAPRAALVTGAAR--------RIGRAIALDLAAHGFDVAVHY 40 (258)
T ss_pred CCCCCEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEEe
Confidence 34456888888875 256778888889999887543
No 288
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=27.11 E-value=1e+02 Score=25.17 Aligned_cols=51 Identities=18% Similarity=0.294 Sum_probs=36.1
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEE---EEecCCHHHHHHHhhhhcC
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAII---MVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~---i~~~~~~~e~~~~l~~~~~ 162 (184)
.++.++.+-|-+++|.++...+.- ++|.+++. +---..-+..+++|+++..
T Consensus 19 ~~~~vfLl~g~I~~l~~~v~~~~~-----~gK~vfVHiDli~Gl~~D~~~i~~L~~~~~ 72 (175)
T PF04309_consen 19 DVEVVFLLTGDIGNLKDIVKRLKA-----AGKKVFVHIDLIEGLSRDEAGIEYLKEYGK 72 (175)
T ss_dssp SSSEEEE-SEECCCHHHHHHHHHH-----TT-EEEEECCGEETB-SSHHHHHHHHHTT-
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHH-----cCCEEEEEehhcCCCCCCHHHHHHHHHcCC
Confidence 468999999999999999886643 67888872 2222334899999999763
No 289
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=27.07 E-value=1e+02 Score=21.98 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=20.9
Q ss_pred CCCEEE---EEEecCCHHHHHHHhhhhc
Q 044681 137 NKPVAI---IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 137 ~kPvvl---~i~~~~~~~e~~~~l~~~~ 161 (184)
.+|-++ -++.++|+||+++.|.++.
T Consensus 45 ~~pFAlVnG~~V~A~t~eeL~~kI~~~i 72 (78)
T PF07293_consen 45 KKPFALVNGEIVAAETAEELLEKIKEKI 72 (78)
T ss_pred CCccEEECCEEEecCCHHHHHHHHHHHH
Confidence 567666 6888999999999999864
No 290
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.97 E-value=3.5e+02 Score=22.12 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcchh
Q 044681 26 YCYRKAAIDLGNELVSKGLDLVYGGGNVGLM 56 (184)
Q Consensus 26 ~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM 56 (184)
+...+.+..+.+.+.+.+..++||-|.++.+
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~ 55 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAAN 55 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHH
Confidence 4556777777788888899999998875553
No 291
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=26.96 E-value=1.3e+02 Score=24.96 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHHhCCCCCCEEE-------------EEEecCCHHHHHHHhhhhcCCC
Q 044681 118 FGTLEKLFEVTTWSQLGVHNKPVAI-------------IMVSASNAKELVQKLEDYEPSH 164 (184)
Q Consensus 118 ~GTL~El~~~l~~~qlg~~~kPvvl-------------~i~~~~~~~e~~~~l~~~~~~~ 164 (184)
.-|.+|+..+..+. | .+++++ .+.+++|++|+.++.+++....
T Consensus 24 a~s~eea~~~~~~l--~--~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~ 79 (202)
T PF08442_consen 24 ATSPEEAREAAKEL--G--GKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKT 79 (202)
T ss_dssp ESSHHHHHHHHHHH--T--TSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSE
T ss_pred cCCHHHHHHHHHHh--C--CCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCc
Confidence 46799999888763 2 456666 7888999999999999976553
No 292
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.88 E-value=3.6e+02 Score=23.27 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=17.1
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
.+.++. ||. |-|=-+++ ....+-.++||
T Consensus 59 d~vi~i-GGD-GTlL~a~~-~~~~~~pi~gI 86 (277)
T PRK03708 59 DFIIAI-GGD-GTILRIEH-KTKKDIPILGI 86 (277)
T ss_pred CEEEEE-eCc-HHHHHHHH-hcCCCCeEEEE
Confidence 344444 456 87776666 66666666666
No 293
>PRK09267 flavodoxin FldA; Validated
Probab=26.77 E-value=1e+02 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=17.8
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHH
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELV 40 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA 40 (184)
||+|.|+.+|..++.. +.|+.+++.|.
T Consensus 1 mmki~IiY~S~tGnT~---~vA~~Ia~~l~ 27 (169)
T PRK09267 1 MAKIGIFFGSDTGNTE---DIAKMIQKKLG 27 (169)
T ss_pred CCeEEEEEECCCChHH---HHHHHHHHHhC
Confidence 4678888888887433 34666666553
No 294
>PRK09072 short chain dehydrogenase; Provisional
Probab=26.66 E-value=1.2e+02 Score=24.63 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
++|.|.|+++. ..+++.+.|+++|+.|+.=+
T Consensus 6 ~~vlItG~s~~--------iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 6 KRVLLTGASGG--------IGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEE
Confidence 57888887762 56777777788888866433
No 295
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=26.55 E-value=1e+02 Score=24.71 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
++|.|.|+++ -..+.+++.|+++|+.++.-+-
T Consensus 6 k~vlItGas~--------gIG~~ia~~l~~~G~~vi~~~r 37 (248)
T TIGR01832 6 KVALVTGANT--------GLGQGIAVGLAEAGADIVGAGR 37 (248)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEcC
Confidence 5777777765 2566777777888887765443
No 296
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=26.46 E-value=1e+02 Score=28.83 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=31.5
Q ss_pred CCEEEEecCccccHHHHHHHHHHHHh-C-CCCCCEEE-----------EE----EecCCHHHHHHHhhh
Q 044681 108 ADCFIVLPGGFGTLEKLFEVTTWSQL-G-VHNKPVAI-----------IM----VSASNAKELVQKLED 159 (184)
Q Consensus 108 sDa~IvlPGG~GTL~El~~~l~~~ql-g-~~~kPvvl-----------~i----~~~~~~~e~~~~l~~ 159 (184)
.|.+ +.-||=||++|+...+...+- . ..+.|+.+ .+ -...+++++++.|..
T Consensus 169 ~D~V-V~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~ 236 (481)
T PLN02958 169 YDGI-VCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIR 236 (481)
T ss_pred CCEE-EEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHc
Confidence 4654 557999999999988742110 0 12456666 22 334578888777765
No 297
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=26.43 E-value=3.4e+02 Score=21.78 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEV 91 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~ 91 (184)
++|.|.|++. ...+.+.+.|+++|+.|+.-+...---....+-..+.|.++..+ .-.+.+.
T Consensus 11 k~vlItGa~g--------~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~-----------~~D~~~~ 71 (255)
T PRK07523 11 RRALVTGSSQ--------GIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHAL-----------AFDVTDH 71 (255)
T ss_pred CEEEEECCcc--------hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEE-----------EccCCCH
Q ss_pred eecCChHHHHHHHHHhCCEEEEecCccc-------cHHHHHHHHHHHHhC
Q 044681 92 KPVDHMHQRKAEMARYADCFIVLPGGFG-------TLEKLFEVTTWSQLG 134 (184)
Q Consensus 92 ~~~~~~~~Rk~~m~~~sDa~IvlPGG~G-------TL~El~~~l~~~qlg 134 (184)
.....+..+-.--...-|++|-..|... +.+++-..+..+-.+
T Consensus 72 ~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~ 121 (255)
T PRK07523 72 DAVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISS 121 (255)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHH
No 298
>PRK05693 short chain dehydrogenase; Provisional
Probab=26.41 E-value=3.5e+02 Score=22.11 Aligned_cols=30 Identities=13% Similarity=0.227 Sum_probs=25.9
Q ss_pred CeEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 44 LDLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 44 ~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
..||+||.. |+=.++++-..+.|-.|+.+-
T Consensus 3 ~vlItGasg-giG~~la~~l~~~G~~V~~~~ 32 (274)
T PRK05693 3 VVLITGCSS-GIGRALADAFKAAGYEVWATA 32 (274)
T ss_pred EEEEecCCC-hHHHHHHHHHHHCCCEEEEEe
Confidence 368999988 999999999999998888774
No 299
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.31 E-value=3.8e+02 Score=23.09 Aligned_cols=59 Identities=17% Similarity=0.104 Sum_probs=35.6
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE----------cCCCcchhHHHHHHHHhc-CCeEEEEe
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY----------GGGNVGLMGLISEEVHRG-RRHVLGII 74 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~----------GGg~~GlM~a~a~ga~~~-GG~viGvi 74 (184)
|++|+++.... + ...+.++++.++|.++|+.++. =||. |-|=-+++-+... .-.++||-
T Consensus 2 ~~~i~iv~~~~---~-~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGD-GT~L~a~~~~~~~~~~pilgIn 71 (264)
T PRK03501 2 RRNLFFFYKRD---K-ELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSIGGD-GTFLQAVRKTGFREDCLYAGIS 71 (264)
T ss_pred CcEEEEEECCC---H-HHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEECCc-HHHHHHHHHhcccCCCeEEeEe
Confidence 44788886432 2 5557888888888887654322 2446 7776555554332 34566763
No 300
>PLN02970 serine racemase
Probab=26.30 E-value=1.4e+02 Score=26.07 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCC--eEEEEecCc
Q 044681 30 KAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRR--HVLGIIPRA 77 (184)
Q Consensus 30 ~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG--~viGviP~~ 77 (184)
..+.|+-+.+.+-.+.++.-|++ |+...++++.++.+- ++|||=|..
T Consensus 164 t~g~Ei~~ql~~~D~vv~~vG~G-G~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 164 TIALEFLEQVPELDVIIVPISGG-GLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred HHHHHHHHhccCCCEEEEeeCch-HHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 34555555554457777777777 999999999988654 889997743
No 301
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=26.25 E-value=1.3e+02 Score=24.52 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
|+|+|+|++- .....+++.|+++|+.++....
T Consensus 1 MkI~IIGG~G--------~mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTG--------DQGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCC--------HHHHHHHHHHHhCCCEEEEEEc
Confidence 4699998543 3667888888999988776543
No 302
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=26.21 E-value=69 Score=29.85 Aligned_cols=37 Identities=38% Similarity=0.470 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHCCCeEEEcCC----------CcchhHHHHHHHHhc
Q 044681 30 KAAIDLGNELVSKGLDLVYGGG----------NVGLMGLISEEVHRG 66 (184)
Q Consensus 30 ~~A~~lG~~LA~~G~~lV~GGg----------~~GlM~a~a~ga~~~ 66 (184)
+-|+.|+..|-++||.||+||- +.|+-++.+.-+++.
T Consensus 328 ~Nakala~~l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~ 374 (477)
T KOG2467|consen 328 KNAKALASALISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLEL 374 (477)
T ss_pred HHHHHHHHHHHHcCceEecCCccceEEEEeccccCCchHHHHHHHHH
Confidence 3567788888889999999995 358888888888874
No 303
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=26.05 E-value=3e+02 Score=21.06 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=33.9
Q ss_pred ceEEEEcCCC--CCCChHHHHHHHHHHHHHHHCCCeEEE-----cCCCcchhHHHHH
Q 044681 12 KRVCVFCGSS--PDYKYCYRKAAIDLGNELVSKGLDLVY-----GGGNVGLMGLISE 61 (184)
Q Consensus 12 ~~I~Vfggs~--~~~~~~~~~~A~~lG~~LA~~G~~lV~-----GGg~~GlM~a~a~ 61 (184)
+.|.+.--+. .......+++.++|+++|.++|+.+-. +.+. |+-..++.
T Consensus 69 r~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~~~~w~~~~~K-GiDD~l~~ 124 (130)
T PF12965_consen 69 REVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVKIITWPPGEGK-GIDDLLAA 124 (130)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEEEEEeCCCCCC-CHhHHHHh
Confidence 3455555444 333466678999999999999988653 5665 88887653
No 304
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=25.71 E-value=3.5e+02 Score=21.67 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
.++|.|.|+++. ..+.+.+.|+++|+.|+.-+-.
T Consensus 11 ~k~ilItGas~~--------IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 11 GQVALVTGSARG--------LGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred CCEEEEECCCch--------HHHHHHHHHHHcCCeEEEEeCC
Confidence 468888898762 5777888888899988866554
No 305
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.69 E-value=2.7e+02 Score=25.02 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=9.8
Q ss_pred HHhCCEEEEecCcc
Q 044681 105 ARYADCFIVLPGGF 118 (184)
Q Consensus 105 ~~~sDa~IvlPGG~ 118 (184)
....|++|+-+|=.
T Consensus 66 ~~~~d~vv~~~g~~ 79 (450)
T PRK14106 66 LEGVDLVVVSPGVP 79 (450)
T ss_pred hhcCCEEEECCCCC
Confidence 45688888877643
No 306
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.68 E-value=1.2e+02 Score=20.76 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.4
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 25 KYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 25 ~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
.|.-.+.+-+.++.||+.|+..|+
T Consensus 5 sPv~LR~~lE~A~~La~~GIRFVp 28 (61)
T PF07131_consen 5 SPVDLRKALEMAHSLAHIGIRFVP 28 (61)
T ss_pred cHHHHHHHHHHHHHHHHcCceeec
Confidence 466788999999999999998874
No 307
>PRK13937 phosphoheptose isomerase; Provisional
Probab=25.66 E-value=1.8e+02 Score=23.32 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHHHHHCCCeEEEcCCCcchh
Q 044681 25 KYCYRKAAIDLGNELVSKGLDLVYGGGNVGLM 56 (184)
Q Consensus 25 ~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM 56 (184)
.+...+.++++.+.|.+.+...++|-|.+++.
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~~ 52 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAAD 52 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHHH
Confidence 35677899999999999999999999986653
No 308
>PRK06180 short chain dehydrogenase; Provisional
Probab=25.64 E-value=1.5e+02 Score=24.50 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=26.8
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
...||+||.. |+=.++++...+.|-+|+.+.
T Consensus 5 ~~vlVtGasg-giG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 5 KTWLITGVSS-GFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred CEEEEecCCC-hHHHHHHHHHHhCcCEEEEEe
Confidence 3478999998 999999999988998888875
No 309
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=25.57 E-value=2.2e+02 Score=21.60 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHH----CCCeEEE---cCCC-cchhHHHHHHHHhcC
Q 044681 29 RKAAIDLGNELVS----KGLDLVY---GGGN-VGLMGLISEEVHRGR 67 (184)
Q Consensus 29 ~~~A~~lG~~LA~----~G~~lV~---GGg~-~GlM~a~a~ga~~~G 67 (184)
.++|+.+|+.||+ .|+.=|. ||.. -|-+.|+++|+.++|
T Consensus 68 ~~aa~~vG~~la~ra~~~gi~~vvfDrg~~~yhGrV~a~a~~are~G 114 (117)
T PRK05593 68 KEAAKKVGKLIAERAKAKGIKQVVFDRGGYKYHGRVKALADAAREAG 114 (117)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEcCCCCcccHHHHHHHHHHHHhC
Confidence 3568888888877 4654442 5432 479999999999987
No 310
>PRK12827 short chain dehydrogenase; Provisional
Probab=25.51 E-value=1.2e+02 Score=24.03 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
++|.|.|+++. ..+.+++.|+++|+.++
T Consensus 7 ~~ilItGasg~--------iG~~la~~l~~~g~~v~ 34 (249)
T PRK12827 7 RRVLITGGSGG--------LGRAIAVRLAADGADVI 34 (249)
T ss_pred CEEEEECCCCh--------HHHHHHHHHHHCCCeEE
No 311
>PRK06483 dihydromonapterin reductase; Provisional
Probab=25.50 E-value=1.4e+02 Score=23.83 Aligned_cols=30 Identities=10% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
..+++.|.|+++ -..+++++.|+++|+.++
T Consensus 1 ~~k~vlItGas~--------gIG~~ia~~l~~~G~~V~ 30 (236)
T PRK06483 1 MPAPILITGAGQ--------RIGLALAWHLLAQGQPVI 30 (236)
T ss_pred CCceEEEECCCC--------hHHHHHHHHHHHCCCeEE
No 312
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=25.49 E-value=1.4e+02 Score=23.63 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=0.0
Q ss_pred cccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 7 AKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 7 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
.+...++|.|.|++.. ..+.+.+.|+++|+.|+.
T Consensus 2 ~~~~~~~ilItGasg~--------iG~~l~~~l~~~g~~V~~ 35 (251)
T PRK12826 2 RDLEGRVALVTGAARG--------IGRAIAVRLAADGAEVIV 35 (251)
T ss_pred CCCCCCEEEEcCCCCc--------HHHHHHHHHHHCCCEEEE
No 313
>PRK06849 hypothetical protein; Provisional
Probab=25.48 E-value=1.1e+02 Score=27.01 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
..|+|.|.|++.. .+..+++.|.+.|+.++.....
T Consensus 3 ~~~~VLI~G~~~~--------~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARAP--------AALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCcH--------HHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999997653 5677788888899998865544
No 314
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=25.40 E-value=1.4e+02 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.185 Sum_probs=25.4
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLD 45 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~ 45 (184)
++|+|.|+-++- + .-+...|+.|.+.|.++|+.
T Consensus 3 ~~~rili~t~~~-G--~GH~~~a~al~~~l~~~g~~ 35 (380)
T PRK13609 3 KNPKVLILTAHY-G--NGHVQVAKTLEQTFRQKGIK 35 (380)
T ss_pred CCCeEEEEEcCC-C--chHHHHHHHHHHHHHhcCCC
Confidence 456888887654 3 35667999999999999885
No 315
>PRK05854 short chain dehydrogenase; Provisional
Probab=25.37 E-value=1e+02 Score=26.32 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
+++.|-|+++ + ..+++++.|+++|+.|+.-+..
T Consensus 15 k~~lITGas~-G-------IG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASD-G-------LGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCC-h-------HHHHHHHHHHHCCCEEEEEeCC
Confidence 5666666654 2 5667777788899988766544
No 316
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=25.31 E-value=4.2e+02 Score=22.48 Aligned_cols=52 Identities=21% Similarity=0.376 Sum_probs=35.5
Q ss_pred HHHHhCCEEEEe--cCccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhhcC
Q 044681 103 EMARYADCFIVL--PGGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 103 ~m~~~sDa~Ivl--PGG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~~~ 162 (184)
-+...||++|.. ..|+|.. ++|++.. ++||+. .++-.+|++++.+.|.++..
T Consensus 268 ~~~~~adi~v~pS~~Eg~~~~--~lEAma~------G~Pvv~s~~~g~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 268 ALMQALDLFVLPSLAEGISNT--ILEAMAS------GLPVIATAVGGNPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred HHHHhcCEEEeccccccCchH--HHHHHHc------CCCEEEcCCCCcHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 445789988743 2444443 6677754 889988 34445789999999987643
No 317
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=25.20 E-value=91 Score=25.17 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=35.0
Q ss_pred HhCCEEEEecCccccHHHHHHHHHHHHhC------CCCCCEEEEE------EecCCHHHHHHHhhh
Q 044681 106 RYADCFIVLPGGFGTLEKLFEVTTWSQLG------VHNKPVAIIM------VSASNAKELVQKLED 159 (184)
Q Consensus 106 ~~sDa~IvlPGG~GTL~El~~~l~~~qlg------~~~kPvvl~i------~~~~~~~e~~~~l~~ 159 (184)
..+|++|+.|=..+||.-++.-++-.-+- ..++|+++.- +...-..+=++.|++
T Consensus 75 ~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~ 140 (177)
T TIGR02113 75 KKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPAMNTKMYQNPITQRNIKILKK 140 (177)
T ss_pred hhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeCCCHHHhCCHHHHHHHHHHHH
Confidence 36899999999999999887655433221 1378999822 222234555566665
No 318
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=25.19 E-value=91 Score=25.34 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=27.3
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHh-------CCCCCCEEE
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQL-------GVHNKPVAI 142 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~ql-------g~~~kPvvl 142 (184)
.+|++|+.|=-.+|+.-++.-++-..+ ...++|+++
T Consensus 78 ~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi 120 (174)
T TIGR02699 78 KYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYI 120 (174)
T ss_pred ccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEE
Confidence 379999999999999998876544322 135789988
No 319
>PRK05568 flavodoxin; Provisional
Probab=25.16 E-value=1.9e+02 Score=21.43 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|++|.|+..|..++.. +.|+.+.+.+.+.|+.+.
T Consensus 1 m~~~~IvY~S~~GnT~---~~a~~i~~~~~~~g~~v~ 34 (142)
T PRK05568 1 MKKINIIYWSGTGNTE---AMANLIAEGAKENGAEVK 34 (142)
T ss_pred CCeEEEEEECCCchHH---HHHHHHHHHHHHCCCeEE
Confidence 4566666667766432 467777777777776543
No 320
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=25.14 E-value=2e+02 Score=23.43 Aligned_cols=14 Identities=0% Similarity=-0.508 Sum_probs=7.9
Q ss_pred HHHHHhCCEEEEec
Q 044681 102 AEMARYADCFIVLP 115 (184)
Q Consensus 102 ~~m~~~sDa~IvlP 115 (184)
..+.-+||.+...|
T Consensus 147 ~v~~~Hs~~v~~~~ 160 (209)
T PRK13146 147 RFYFVHSYYAQPAN 160 (209)
T ss_pred EEEEEeEEEEEcCC
Confidence 34445677665555
No 321
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=25.13 E-value=1.3e+02 Score=22.61 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeE
Q 044681 13 RVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDL 46 (184)
Q Consensus 13 ~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~l 46 (184)
++.|+.+|..++. .+.|+.+.+.|...|+.+
T Consensus 2 ~i~IiY~S~tGnT---e~iA~~ia~~l~~~g~~v 32 (140)
T TIGR01754 2 RILLAYLSLSGNT---EEVAFMIQDYLQKDGHEV 32 (140)
T ss_pred eEEEEEECCCChH---HHHHHHHHHHHhhCCeeE
Confidence 4555555676642 356777777777777654
No 322
>PRK07577 short chain dehydrogenase; Provisional
Probab=25.08 E-value=1.4e+02 Score=23.59 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
++|.|.|+++. ..+.+.+.|+++|+.++.
T Consensus 4 k~vlItG~s~~--------iG~~ia~~l~~~G~~v~~ 32 (234)
T PRK07577 4 RTVLVTGATKG--------IGLALSLRLANLGHQVIG 32 (234)
T ss_pred CEEEEECCCCc--------HHHHHHHHHHHCCCEEEE
No 323
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.99 E-value=3.9e+02 Score=22.99 Aligned_cols=59 Identities=25% Similarity=0.253 Sum_probs=37.2
Q ss_pred CChHHHHHHHHHhCCEEEEe---cCcccc----HHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHH
Q 044681 95 DHMHQRKAEMARYADCFIVL---PGGFGT----LEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQ 155 (184)
Q Consensus 95 ~~~~~Rk~~m~~~sDa~Ivl---PGG~GT----L~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~ 155 (184)
.+-.+|-..+.+.|+.||-+ +|=.|. .+++.+.+...+- ..+.|+++..= .++++++-+
T Consensus 154 tT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~-~t~~Pi~vGFG-I~~~e~~~~ 219 (263)
T CHL00200 154 TSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKK-MTNKPIILGFG-ISTSEQIKQ 219 (263)
T ss_pred CCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHH-hcCCCEEEECC-cCCHHHHHH
Confidence 44479999999999988876 676666 2445554444332 35789988321 234555444
No 324
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.86 E-value=3.5e+02 Score=21.29 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYG 49 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~G 49 (184)
+++|.|.|+++ ....++.+.|+++|+.++.-
T Consensus 5 ~~~ilI~Gasg--------~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 5 GKVAIVTGASG--------GIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCEEEEeCCCc--------HHHHHHHHHHHHCCCEEEEE
Confidence 45788888775 35677777788888888755
No 325
>PRK09291 short chain dehydrogenase; Provisional
Probab=24.85 E-value=1.1e+02 Score=24.53 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
++|.|.|++. -..+.+.+.|+++|+.++....
T Consensus 3 ~~vlVtGasg--------~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 3 KTILITGAGS--------GFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCEEEEEeC
Confidence 4677777765 2556667777778887775443
No 326
>PRK06101 short chain dehydrogenase; Provisional
Probab=24.72 E-value=1.3e+02 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
|+++.|.|+++ -..+++.+.|+++|+.++.-+..
T Consensus 1 ~~~vlItGas~--------giG~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 1 MTAVLITGATS--------GIGKQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred CcEEEEEcCCc--------HHHHHHHHHHHhCCCEEEEEECC
Confidence 35677778765 25677778888889988766544
No 327
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.71 E-value=1.5e+02 Score=23.69 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYG 49 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~G 49 (184)
++|.|.|+++. ..+++.+.|+++|+.++..
T Consensus 6 k~ilItGas~g--------IG~~la~~l~~~G~~vv~~ 35 (253)
T PRK08642 6 QTVLVTGGSRG--------LGAAIARAFAREGARVVVN 35 (253)
T ss_pred CEEEEeCCCCc--------HHHHHHHHHHHCCCeEEEE
Confidence 57888887752 5677777888889888753
No 328
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=24.67 E-value=1.8e+02 Score=22.51 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=48.8
Q ss_pred HHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCC
Q 044681 60 SEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKP 139 (184)
Q Consensus 60 a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kP 139 (184)
..++.+.||.++.+-|+.. .+ -...++..=-+.|-..+|++|+=--.-++++|+.+.. ..|
T Consensus 58 e~A~~~LGg~~i~~~~~~s--------~~---~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a~~~--------~vP 118 (142)
T PF02729_consen 58 EAAANRLGGHVIYLDPSTS--------SL---GKGESLEDTARVLSRYVDAIVIRHPSHGALEELAEHS--------SVP 118 (142)
T ss_dssp HHHHHHTTCEEEEEETTTS--------ST---TTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHC--------SSE
T ss_pred HHhhhcceeEEEEECcccc--------cC---cCCCCHHHHHHHHHHhhheEEEEeccchHHHHHHHhc--------cCC
Confidence 4467789999999864321 11 0122343334577788999999999999999987744 678
Q ss_pred EEEEEEecCCHHHHH
Q 044681 140 VAIIMVSASNAKELV 154 (184)
Q Consensus 140 vvl~i~~~~~~~e~~ 154 (184)
||=..-...-|-+++
T Consensus 119 VINa~~~~~HPtQaL 133 (142)
T PF02729_consen 119 VINAGDDHEHPTQAL 133 (142)
T ss_dssp EEEEEESSBSHHHHH
T ss_pred eEcCcCCCCChHHHH
Confidence 875433334454443
No 329
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=24.63 E-value=7.9e+02 Score=25.37 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=7.8
Q ss_pred CCceEEEEcCCC
Q 044681 10 RFKRVCVFCGSS 21 (184)
Q Consensus 10 ~~~~I~Vfggs~ 21 (184)
.+++|.|.||..
T Consensus 5 ~~~kvlviG~g~ 16 (1050)
T TIGR01369 5 DIKKILVIGSGP 16 (1050)
T ss_pred CCcEEEEECCCc
Confidence 456777777664
No 330
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=24.59 E-value=1.3e+02 Score=23.87 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
|+++.|.|+++. ....+.+.|+++|+.++.
T Consensus 1 ~~~~lItGa~g~--------iG~~l~~~l~~~g~~v~~ 30 (247)
T PRK09730 1 MAIALVTGGSRG--------IGRATALLLAQEGYTVAV 30 (247)
T ss_pred CCEEEEeCCCch--------HHHHHHHHHHHCCCEEEE
Confidence 457788887752 567788888888988753
No 331
>PRK09186 flagellin modification protein A; Provisional
Probab=24.57 E-value=1.4e+02 Score=23.89 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
++|.|.|+++ ...+.+++.|+++|+.++.
T Consensus 5 k~vlItGas~--------giG~~~a~~l~~~g~~v~~ 33 (256)
T PRK09186 5 KTILITGAGG--------LIGSALVKAILEAGGIVIA 33 (256)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEE
No 332
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.57 E-value=1.3e+02 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=0.0
Q ss_pred ceEEEEcCCC-CCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSS-PDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~-~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|.+.|-|+++ .+ ..+++++.|+++|+.|+
T Consensus 8 k~~lItGas~~~g-------IG~a~a~~la~~G~~Vi 37 (252)
T PRK06079 8 KKIVVMGVANKRS-------IAWGCAQAIKDQGATVI 37 (252)
T ss_pred CEEEEeCCCCCCc-------hHHHHHHHHHHCCCEEE
No 333
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.56 E-value=1.8e+02 Score=22.85 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
++|.|.|++. .....+.+.|.++|+.++..+..
T Consensus 6 ~~vlItG~sg--------~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 6 KVALVTGASR--------GIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CEEEEECCCc--------hHHHHHHHHHHHCCCEEEEEeCC
Confidence 6788888775 36778888888999998655543
No 334
>PRK07102 short chain dehydrogenase; Provisional
Probab=24.52 E-value=3.6e+02 Score=21.43 Aligned_cols=30 Identities=7% Similarity=0.014 Sum_probs=26.2
Q ss_pred CeEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 44 LDLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 44 ~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
..+|+||.. |+-.++++...+.|..|+.+-
T Consensus 3 ~vlItGas~-giG~~~a~~l~~~G~~Vi~~~ 32 (243)
T PRK07102 3 KILIIGATS-DIARACARRYAAAGARLYLAA 32 (243)
T ss_pred EEEEEcCCc-HHHHHHHHHHHhcCCEEEEEe
Confidence 368999998 999999999999998888774
No 335
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=24.50 E-value=1.3e+02 Score=25.87 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=22.7
Q ss_pred cCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 9 SRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 9 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
..-++|.|.|++. -....+.+.|.++|+.|+.
T Consensus 8 ~~~~~vLVtG~~G--------fIG~~l~~~L~~~G~~V~~ 39 (353)
T PLN02896 8 SATGTYCVTGATG--------YIGSWLVKLLLQRGYTVHA 39 (353)
T ss_pred cCCCEEEEECCCc--------HHHHHHHHHHHHCCCEEEE
Confidence 4446788888875 2566777777888887763
No 336
>cd01356 AcnX_swivel Putative Aconitase X swivel domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=24.48 E-value=1.3e+02 Score=23.21 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=24.4
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.++-+++||+|-|.-.==.-.|.+.+.|..++-+++
T Consensus 42 i~gkILv~p~~kGSt~gs~vl~~l~~~g~aP~AiI~ 77 (123)
T cd01356 42 IAGKVLVLPGGKGSTVGSYVLYELARNGTAPAAIVF 77 (123)
T ss_pred ccceEEEecCCCCcchHHHHHHHHHHcCCCCeeEee
Confidence 378999999999987655555555555554444444
No 337
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=24.41 E-value=97 Score=25.35 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=20.5
Q ss_pred EcCCCCCCC---hHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 17 FCGSSPDYK---YCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 17 fggs~~~~~---~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
||||....+ +...+.++++.+...+....||.|||.
T Consensus 5 lGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~ 43 (221)
T TIGR02076 5 LGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGK 43 (221)
T ss_pred echhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcH
Confidence 577766543 334455555555433345677898765
No 338
>PRK06197 short chain dehydrogenase; Provisional
Probab=24.36 E-value=1.4e+02 Score=25.13 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=25.8
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
+...++|.|.|+++- ..+++++.|+++|+.++.-+-
T Consensus 13 ~~~~k~vlItGas~g--------IG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 13 DQSGRVAVVTGANTG--------LGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred cCCCCEEEEcCCCCc--------HHHHHHHHHHHCCCEEEEEeC
Confidence 344568888887752 567778888889998876543
No 339
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=24.32 E-value=4e+02 Score=21.80 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCEEEEe---cCccccHHHHHHHHHHHHhCCCCCCEEE---------------EEEecCCHHHHHHHhhh
Q 044681 98 HQRKAEMARYADCFIVL---PGGFGTLEKLFEVTTWSQLGVHNKPVAI---------------IMVSASNAKELVQKLED 159 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~Ivl---PGG~GTL~El~~~l~~~qlg~~~kPvvl---------------~i~~~~~~~e~~~~l~~ 159 (184)
.....-+...+|++|.. .-|+|.- ++|+++. ++||+. .+.+.+ ++++.+.|.+
T Consensus 234 ~~~~~~~~~~~d~~v~ps~~~E~~~~~--~lEAma~------G~PvI~~~~~~~~e~i~~~~~g~l~~~-~~~l~~~l~~ 304 (335)
T cd03802 234 GAEKAELLGNARALLFPILWEEPFGLV--MIEAMAC------GTPVIAFRRGAVPEVVEDGVTGFLVDS-VEELAAAVAR 304 (335)
T ss_pred HHHHHHHHHhCcEEEeCCcccCCcchH--HHHHHhc------CCCEEEeCCCCchhheeCCCcEEEeCC-HHHHHHHHHH
Q ss_pred h
Q 044681 160 Y 160 (184)
Q Consensus 160 ~ 160 (184)
.
T Consensus 305 l 305 (335)
T cd03802 305 A 305 (335)
T ss_pred H
No 340
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=24.28 E-value=97 Score=24.99 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=5.6
Q ss_pred HHhCCEEEEec
Q 044681 105 ARYADCFIVLP 115 (184)
Q Consensus 105 ~~~sDa~IvlP 115 (184)
+..||++++..
T Consensus 74 i~~adv~~I~V 84 (185)
T PF03721_consen 74 IKDADVVFICV 84 (185)
T ss_dssp HHH-SEEEE--
T ss_pred hhccceEEEec
Confidence 56788766654
No 341
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.24 E-value=1.5e+02 Score=24.99 Aligned_cols=45 Identities=13% Similarity=-0.031 Sum_probs=31.0
Q ss_pred ccccccCCceEEEEcCCCCCC--ChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 4 KKEAKSRFKRVCVFCGSSPDY--KYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 4 ~~~~~~~~~~I~Vfggs~~~~--~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
+.+.+++...+-||||++.-. ...=.+-++..=+.|.++|+.|+.
T Consensus 111 ~~Ga~~~~l~aKifGGA~m~~~~~~IG~rNi~~a~~~L~~~gI~Iva 157 (213)
T PRK13493 111 SMGAERERLKFKLFGGAHLMGYQSLVGEKNVEFVLEYAKREKLNVVA 157 (213)
T ss_pred HcCCCHHHeEEEEEeCcccccccccHhHHHHHHHHHHHHHcCCcEEE
Confidence 445666778999999998542 223344555555679999999994
No 342
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=24.13 E-value=70 Score=26.68 Aligned_cols=40 Identities=18% Similarity=0.075 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
|++|+|+-++-...+--....+..-=..|.+.|+.+..=+
T Consensus 1 ~kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aS 40 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFA 40 (217)
T ss_pred CCEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEe
Confidence 4578888754222111112233344556788898877633
No 343
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.13 E-value=1.6e+02 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
+++|.|.|++. ...++|.+.|+++|+.++.
T Consensus 6 ~~~vlItGasg--------~iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 6 GRVALVTGAAR--------GLGRAIALRLARAGADVVV 35 (249)
T ss_pred CCEEEEeCCCc--------hHHHHHHHHHHHCCCeEEE
Confidence 46899999875 2677788888899998755
No 344
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=24.03 E-value=1.1e+02 Score=20.68 Aligned_cols=20 Identities=20% Similarity=0.428 Sum_probs=17.0
Q ss_pred EEEecCCHHHHHHHhhhhcC
Q 044681 143 IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 143 ~i~~~~~~~e~~~~l~~~~~ 162 (184)
.+++-++++|+++.+.+|+.
T Consensus 37 k~vV~Es~~eVi~ki~~y~~ 56 (60)
T PF06289_consen 37 KYVVKESVEEVIEKIIEYRR 56 (60)
T ss_pred EEEEECCHHHHHHHHHHHHH
Confidence 56678899999999999864
No 345
>PRK07832 short chain dehydrogenase; Provisional
Probab=24.03 E-value=2.5e+02 Score=23.00 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCcccccc
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKE 82 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e 82 (184)
+++.|.|+++. ..+++.+.|+++|+.++.=+....-.+...+.....++.++-+++......+
T Consensus 1 k~vlItGas~g--------iG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 63 (272)
T PRK07832 1 KRCFVTGAASG--------IGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYD 63 (272)
T ss_pred CEEEEeCCCCH--------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHH
No 346
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.01 E-value=5.4e+02 Score=23.27 Aligned_cols=118 Identities=16% Similarity=0.242 Sum_probs=69.5
Q ss_pred HHHHCCCeEEEcCCCcc---hhHHHHHHHHh--cCCeEEEEecCccccccccCCCCceEe----e-c--CCh-HHHHHHH
Q 044681 38 ELVSKGLDLVYGGGNVG---LMGLISEEVHR--GRRHVLGIIPRALMKKELTGVTLGEVK----P-V--DHM-HQRKAEM 104 (184)
Q Consensus 38 ~LA~~G~~lV~GGg~~G---lM~a~a~ga~~--~GG~viGviP~~~~~~e~~~~~~~~~~----~-~--~~~-~~Rk~~m 104 (184)
.++++|..++-|+-++| -|.+. -|-+. .-|+.|-| -.|.|..+.+-..++ + + .++ -.=|..|
T Consensus 123 a~~kRGLviiVGaTGSGKSTtmAaM-i~yRN~~s~gHIiTI----EDPIEfih~h~~CIvTQREvGvDTesw~~AlkNtl 197 (375)
T COG5008 123 ALAKRGLVIIVGATGSGKSTTMAAM-IGYRNKNSTGHIITI----EDPIEFIHKHKRCIVTQREVGVDTESWEVALKNTL 197 (375)
T ss_pred hcccCceEEEECCCCCCchhhHHHH-hcccccCCCCceEEe----cChHHHHhcccceeEEeeeeccchHHHHHHHHHHH
Confidence 36789999997765444 33332 12222 22454544 334444443322121 1 2 233 3456667
Q ss_pred HHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhhhcCCCCC
Q 044681 105 ARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEPSHDG 166 (184)
Q Consensus 105 ~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~~~~~~~~ 166 (184)
-+..|.++ -|-+=+-+-+-.++++.+.|. -| +.-.++++..+++|.|.+|.|.+.+
T Consensus 198 RQapDvI~--IGEvRsretMeyAi~fAeTGH---Lc-maTLHAN~anQaleRIinffP~Err 253 (375)
T COG5008 198 RQAPDVIL--IGEVRSRETMEYAIQFAETGH---LC-MATLHANNANQALERIINFFPEERR 253 (375)
T ss_pred hcCCCeEE--EeecccHhHHHHHHHHHhcCc---eE-EEEeccCCchHHHHHHHhhCcHHHh
Confidence 67778554 477777777777787777662 23 3445688999999999999887543
No 347
>PRK07035 short chain dehydrogenase; Provisional
Probab=24.00 E-value=3.8e+02 Score=21.42 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
++|.|.|+++ ....++.+.|+++|+.|+--+.
T Consensus 9 k~vlItGas~--------gIG~~l~~~l~~~G~~Vi~~~r 40 (252)
T PRK07035 9 KIALVTGASR--------GIGEAIAKLLAQQGAHVIVSSR 40 (252)
T ss_pred CEEEEECCCc--------HHHHHHHHHHHHCCCEEEEEeC
Confidence 5677777765 3567777788888888774443
No 348
>PRK13669 hypothetical protein; Provisional
Probab=24.00 E-value=1.2e+02 Score=21.64 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=21.3
Q ss_pred CCCCEEE---EEEecCCHHHHHHHhhhhc
Q 044681 136 HNKPVAI---IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 136 ~~kPvvl---~i~~~~~~~e~~~~l~~~~ 161 (184)
..+|-.+ .++.++|+||+++.|.++.
T Consensus 44 ~~~~FAlVng~~V~a~t~eeL~~kI~~~i 72 (78)
T PRK13669 44 SEGLFALVNGEVVEGETPEELVENIYAHL 72 (78)
T ss_pred ccCceEEECCeEeecCCHHHHHHHHHHHH
Confidence 3577777 6788999999999998764
No 349
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.92 E-value=1.4e+02 Score=24.11 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
++|-|.|+++.+ .....+++.|+++|+.++..+
T Consensus 6 k~vlItGas~~~------giG~~la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 6 KIALVTGASRLN------GIGAAVCRRLAAKGIDIFFTY 38 (256)
T ss_pred cEEEEeCCCCCC------CHHHHHHHHHHHcCCcEEEEc
Confidence 578888887531 255667888888999888765
No 350
>PRK07476 eutB threonine dehydratase; Provisional
Probab=23.90 E-value=1.3e+02 Score=26.21 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCC--eEEEEecC
Q 044681 28 YRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRR--HVLGIIPR 76 (184)
Q Consensus 28 ~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG--~viGviP~ 76 (184)
|...+.|+-+.+.+-.+.++.-|++ |+.-.++++.++.+- +++||-|.
T Consensus 154 ~~t~~~Ei~~Q~~~~d~iv~~vG~G-G~~~Gv~~~~k~~~~~~~vigVe~~ 203 (322)
T PRK07476 154 QGTIGLEILEALPDVATVLVPLSGG-GLASGVAAAVKAIRPAIRVIGVSME 203 (322)
T ss_pred hhHHHHHHHHhCcCCCEEEEEcChH-HHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 3445555555544345566666666 999999999988654 78999875
No 351
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=23.90 E-value=1.7e+02 Score=24.17 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=20.1
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHCCC--eEEEcCCC
Q 044681 17 FCGSSPDYKYCYRKAAIDLGNELVSKGL--DLVYGGGN 52 (184)
Q Consensus 17 fggs~~~~~~~~~~~A~~lG~~LA~~G~--~lV~GGg~ 52 (184)
|||+...+.+.....++.+.++ .+.|+ .+|.||+.
T Consensus 6 ~GGs~l~~~~~~~~~~~~i~~l-~~~g~~~viV~sg~g 42 (239)
T cd04246 6 FGGTSVADIERIKRVAERIKKA-VKKGYQVVVVVSAMG 42 (239)
T ss_pred ECccccCCHHHHHHHHHHHHHH-HHcCCCEEEEECCCC
Confidence 8888876444455556665543 34444 46677544
No 352
>PRK07035 short chain dehydrogenase; Provisional
Probab=23.89 E-value=1.2e+02 Score=24.46 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 42 KGLDLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 42 ~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
....+|+||+. |+=.++++...+.|-+|+.+-
T Consensus 8 ~k~vlItGas~-gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 8 GKIALVTGASR-GIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred CCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEe
Confidence 35679999998 999999999999998888874
No 353
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.86 E-value=1.6e+02 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=17.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
+++.|.|++.. ..+.+.+.|+++|+.|+
T Consensus 12 ~~vlItGa~g~--------iG~~~a~~L~~~g~~V~ 39 (264)
T PRK12829 12 LRVLVTGGASG--------IGRAIAEAFAEAGARVH 39 (264)
T ss_pred CEEEEeCCCCc--------HHHHHHHHHHHCCCEEE
Confidence 56777776542 45566666666777654
No 354
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=23.80 E-value=68 Score=28.32 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 45 DLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 45 ~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
.||.|+|.+|++-|+ .|.++|-+|+-|-
T Consensus 2 VvVIG~G~AGl~AA~--~Aae~G~~V~lve 29 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAI--EAAEAGAKVLLVE 29 (417)
T ss_dssp EEEE-SSHHHHHHHH--HHHHTTT-EEEEE
T ss_pred EEEECCCHHHHHHHH--HHhhhcCeEEEEE
Confidence 478899998988766 4667888888884
No 355
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=23.70 E-value=1.7e+02 Score=24.01 Aligned_cols=33 Identities=12% Similarity=0.365 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|++|+|+ + +-|...- ..+..|+..||+.|+.++
T Consensus 1 m~~iav~-~-KGGvGKT--T~~~nLA~~La~~G~kVl 33 (270)
T cd02040 1 MRQIAIY-G-KGGIGKS--TTTQNLSAALAEMGKKVM 33 (270)
T ss_pred CcEEEEE-e-CCcCCHH--HHHHHHHHHHHhCCCeEE
Confidence 5789998 4 5554433 468889999999998555
No 356
>PRK07308 flavodoxin; Validated
Probab=23.49 E-value=1.6e+02 Score=22.19 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
+.|.|+.+|..++. .+.|+.+++.|.+.|+.+.
T Consensus 2 ~~~~IvY~S~tGnT---e~iA~~ia~~l~~~g~~~~ 34 (146)
T PRK07308 2 ALAKIVYASMTGNT---EEIADIVADKLRELGHDVD 34 (146)
T ss_pred ceEEEEEECCCchH---HHHHHHHHHHHHhCCCceE
Confidence 35666666776633 3578888888887777543
No 357
>PRK06443 chorismate mutase; Validated
Probab=23.49 E-value=1.9e+02 Score=23.90 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEE
Q 044681 27 CYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVL 71 (184)
Q Consensus 27 ~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~vi 71 (184)
.|...|+.||..+...||.++----| ...-.|+..+||+++
T Consensus 91 ~y~~~~~sl~~~~~~~g~~v~i~~~~----~~~~~~~~~~~~~~~ 131 (177)
T PRK06443 91 DYDSLILSLGLILSRPGIEIYIEDNP----DSIEEGCSKAGGHVV 131 (177)
T ss_pred chHHHHHHHHHHHhcCCcEEEeccCc----hHHHHhhhhcCCeEe
Confidence 47789999999999999999744434 555567888999764
No 358
>PRK05717 oxidoreductase; Validated
Probab=23.47 E-value=1.7e+02 Score=23.69 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=0.0
Q ss_pred cccccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 5 KEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 5 ~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
+.++...++|.|.|+++. ..+++.+.|+++|+.++.
T Consensus 4 ~~~~~~~k~vlItG~sg~--------IG~~~a~~l~~~g~~v~~ 39 (255)
T PRK05717 4 PNPGHNGRVALVTGAARG--------IGLGIAAWLIAEGWQVVL 39 (255)
T ss_pred CCcccCCCEEEEeCCcch--------HHHHHHHHHHHcCCEEEE
No 359
>PRK05723 flavodoxin; Provisional
Probab=23.30 E-value=1.7e+02 Score=22.86 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=17.3
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
++++|||-......+.|...++.|=+.|.+.|-.-|
T Consensus 85 ~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv 120 (151)
T PRK05723 85 LPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREV 120 (151)
T ss_pred CEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEe
Confidence 355555544333223455555555555555444443
No 360
>PRK06138 short chain dehydrogenase; Provisional
Probab=23.27 E-value=1.6e+02 Score=23.52 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=0.0
Q ss_pred cccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 7 AKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 7 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
++-..+++.|.|+++. ....+.+.|+++|+.++
T Consensus 1 m~~~~k~~lItG~sg~--------iG~~la~~l~~~G~~v~ 33 (252)
T PRK06138 1 MRLAGRVAIVTGAGSG--------IGRATAKLFAREGARVV 33 (252)
T ss_pred CCCCCcEEEEeCCCch--------HHHHHHHHHHHCCCeEE
No 361
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=23.22 E-value=35 Score=27.82 Aligned_cols=42 Identities=29% Similarity=0.141 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCCCCh-HHHHHHHHHHHHHHH-CCCeEEEcCCC
Q 044681 11 FKRVCVFCGSSPDYKY-CYRKAAIDLGNELVS-KGLDLVYGGGN 52 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~-~~~~~A~~lG~~LA~-~G~~lV~GGg~ 52 (184)
++.|.=||||.....+ .+.+.++.+.++... ....||.|||+
T Consensus 1 k~~ViK~GGs~l~~~~~~~~~~~~~i~~l~~~g~~vvvV~g~g~ 44 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEELRELADDIALLSQLGIKVVVVHGGGS 44 (242)
T ss_dssp SEEEEEE-HHGHSSHSHHHHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred CeEEEEECchhhCCchHHHHHHHHHHHHHHhCCCeEEEEECChh
Confidence 3567788998876431 366667777664443 55667788875
No 362
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.15 E-value=1.2e+02 Score=25.87 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=23.3
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
++.+++|+|+|... ....++..|+++|+.++
T Consensus 1 ~~~~~~I~vIGaG~---------mG~~iA~~l~~~g~~V~ 31 (311)
T PRK06130 1 MNPIQNLAIIGAGT---------MGSGIAALFARKGLQVV 31 (311)
T ss_pred CCCccEEEEECCCH---------HHHHHHHHHHhCCCeEE
Confidence 35678999999753 56677778888998765
No 363
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=23.11 E-value=2.4e+02 Score=23.40 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=41.2
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCCe-EEEEecCccccccccCC-CCceEeecCChHHHHHHHH--HhCCEEEEecCcc
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRRH-VLGIIPRALMKKELTGV-TLGEVKPVDHMHQRKAEMA--RYADCFIVLPGGF 118 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG~-viGviP~~~~~~e~~~~-~~~~~~~~~~~~~Rk~~m~--~~sDa~IvlPGG~ 118 (184)
...+|+|+|+.|++- ++-|+..|.. ++.+-.+. ...+.... ..+..+...........+. ...|.++=..|+.
T Consensus 122 ~~VlV~G~G~vG~~~--~~~ak~~G~~~Vi~~~~~~-~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~ 198 (280)
T TIGR03366 122 RRVLVVGAGMLGLTA--AAAAAAAGAARVVAADPSP-DRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT 198 (280)
T ss_pred CEEEEECCCHHHHHH--HHHHHHcCCCEEEEECCCH-HHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence 467888877666553 4456667765 66663211 11111100 1111111122111111111 1368888888877
Q ss_pred ccHHHHHHHHH
Q 044681 119 GTLEKLFEVTT 129 (184)
Q Consensus 119 GTL~El~~~l~ 129 (184)
.++++.+..+.
T Consensus 199 ~~~~~~~~~l~ 209 (280)
T TIGR03366 199 AAVRACLESLD 209 (280)
T ss_pred HHHHHHHHHhc
Confidence 78888777663
No 364
>PRK07024 short chain dehydrogenase; Provisional
Probab=23.07 E-value=1.8e+02 Score=23.63 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=24.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
++|.|.|+++ -..+++.+.|+++|+.|+.-+-.
T Consensus 3 ~~vlItGas~--------gIG~~la~~l~~~G~~v~~~~r~ 35 (257)
T PRK07024 3 LKVFITGASS--------GIGQALAREYARQGATLGLVARR 35 (257)
T ss_pred CEEEEEcCCc--------HHHHHHHHHHHHCCCEEEEEeCC
Confidence 5777778765 36777888888899988866544
No 365
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.05 E-value=1.3e+02 Score=23.96 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=17.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
+++.|.|+++. ....+.+.|+++|+.++.-.
T Consensus 6 ~~~lItG~~g~--------iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 6 KVIVITGGAQG--------LGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEEEEe
Confidence 35666665542 44555556666666655433
No 366
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=22.99 E-value=97 Score=23.84 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=32.0
Q ss_pred CEEEEecCccccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhhhcC
Q 044681 109 DCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 109 Da~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~~~~ 162 (184)
..+|+++||+-.-+|..+.+. +..++| +...+++++++.+..-..
T Consensus 63 ~~VIa~GGG~~~~~~~~~~L~------~~g~vI---~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 63 NCVIACGGGIVLKEENRELLK------ENGLVI---YLDADPEELAERLRARDN 107 (158)
T ss_dssp SEEEEE-TTGGGSHHHHHHHH------HHSEEE---EEE--HHHHHHHHHHHCT
T ss_pred cEEEeCCCCCcCcHHHHHHHH------hCCEEE---EEeCCHHHHHHHHhCCCC
Confidence 689999999999999888885 133443 446689999999986543
No 367
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=22.96 E-value=1.6e+02 Score=22.72 Aligned_cols=44 Identities=7% Similarity=0.059 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGR 67 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~G 67 (184)
|++|+++|-. +....+++.|+++||.|.. . -.-...++...+.|
T Consensus 1 m~~Ig~IGlG---------~mG~~~a~~L~~~g~~v~~--~--d~~~~~~~~~~~~g 44 (163)
T PF03446_consen 1 MMKIGFIGLG---------NMGSAMARNLAKAGYEVTV--Y--DRSPEKAEALAEAG 44 (163)
T ss_dssp -BEEEEE--S---------HHHHHHHHHHHHTTTEEEE--E--ESSHHHHHHHHHTT
T ss_pred CCEEEEEchH---------HHHHHHHHHHHhcCCeEEe--e--ccchhhhhhhHHhh
Confidence 6889999964 4667788888999999852 2 13345555555555
No 368
>PRK08643 acetoin reductase; Validated
Probab=22.95 E-value=4e+02 Score=21.33 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
+.+.|.|+++ ...+.+.+.|+++|+.++.-+...---+....-..+.+..+..+
T Consensus 3 k~~lItGas~--------giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~ 56 (256)
T PRK08643 3 KVALVTGAGQ--------GIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAV 56 (256)
T ss_pred CEEEEECCCC--------hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEE
No 369
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=22.94 E-value=53 Score=30.19 Aligned_cols=43 Identities=26% Similarity=0.419 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHCCCeEEEcCCC----------cchhHHHHHHHHhcCCeEEE
Q 044681 30 KAAIDLGNELVSKGLDLVYGGGN----------VGLMGLISEEVHRGRRHVLG 72 (184)
Q Consensus 30 ~~A~~lG~~LA~~G~~lV~GGg~----------~GlM~a~a~ga~~~GG~viG 72 (184)
+-|+.|++.|.++|+.|++||=. .|+-+..+.-+++.-|.++-
T Consensus 307 ~NAk~La~~L~~~G~~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vn 359 (399)
T PF00464_consen 307 KNAKALAEALQERGFKVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVN 359 (399)
T ss_dssp HHHHHHHHHHHHTT-EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-E
T ss_pred HHHHHHHHHHhhCCcEEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeec
Confidence 45788888999999999987632 25555556667776665554
No 370
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=22.91 E-value=1.4e+02 Score=27.91 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 98 HQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.-|+-+=...++++++-|=-+|||.|.+++..+.+-.- -+||+-
T Consensus 318 ~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~g-y~~viS 361 (423)
T COG0148 318 RLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAG-YTAVIS 361 (423)
T ss_pred HHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCC-CeEEEe
Confidence 44555556668999999999999999999998876421 135544
No 371
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=22.87 E-value=2.3e+02 Score=24.74 Aligned_cols=58 Identities=17% Similarity=0.191 Sum_probs=38.7
Q ss_pred cCCCCCCChHHHHHHHHHHHHHHH----CCCeEEEcCCCcchhHHHHHHHHhcC--CeEEEEecC
Q 044681 18 CGSSPDYKYCYRKAAIDLGNELVS----KGLDLVYGGGNVGLMGLISEEVHRGR--RHVLGIIPR 76 (184)
Q Consensus 18 ggs~~~~~~~~~~~A~~lG~~LA~----~G~~lV~GGg~~GlM~a~a~ga~~~G--G~viGviP~ 76 (184)
+++++-...-|...+.|+-+.+.. -.+.++.-|++ |..-.++++.++.+ -++|||-|.
T Consensus 156 ~~~~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtG-gt~~Gi~~~~k~~~~~~~vigVe~~ 219 (331)
T PRK03910 156 GGSNALGALGYVACALEIAQQLAEGGVDFDAVVVASGSG-GTHAGLAAGLAALGPDIPVIGVTVS 219 (331)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcH-HHHHHHHHHHHHhCCCCeEEEEEec
Confidence 444444334455677788877764 35666666666 88888888887754 578999774
No 372
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=22.83 E-value=80 Score=26.78 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=20.6
Q ss_pred HHHhCCEEEEecCccccHHHHH--HHHHHHH-hCCCCCCEEE
Q 044681 104 MARYADCFIVLPGGFGTLEKLF--EVTTWSQ-LGVHNKPVAI 142 (184)
Q Consensus 104 m~~~sDa~IvlPGG~GTL~El~--~~l~~~q-lg~~~kPvvl 142 (184)
+...+|++++ +.||+.+-. .+....+ ...+++|+|+
T Consensus 51 ~~~~~~alvi---~~G~l~~~~~~~i~~~~~~a~~~~~pvVl 89 (263)
T PRK09355 51 MAKIAGALVI---NIGTLTEERIEAMLAAGKIANEAGKPVVL 89 (263)
T ss_pred HHHhcCceEE---eCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 3478899999 555554422 2222222 2345789988
No 373
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=22.82 E-value=3.8e+02 Score=23.91 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=36.9
Q ss_pred HHHHHHhCCEEEEec--Cc----cccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhh
Q 044681 101 KAEMARYADCFIVLP--GG----FGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLE 158 (184)
Q Consensus 101 k~~m~~~sDa~IvlP--GG----~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~ 158 (184)
..-+...||++|.-. +. -|.-.=+.|+++. ++|||. .++-..|++++.+.|.
T Consensus 292 l~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~------G~PVI~t~~~g~~E~v~~~~~G~lv~~~d~~~la~ai~ 365 (406)
T PRK15427 292 VKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAV------GIPVVSTLHSGIPELVEADKSGWLVPENDAQALAQRLA 365 (406)
T ss_pred HHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhC------CCCEEEeCCCCchhhhcCCCceEEeCCCCHHHHHHHHH
Confidence 344668899998632 11 2233346777765 899988 3444578999999998
Q ss_pred hhcC
Q 044681 159 DYEP 162 (184)
Q Consensus 159 ~~~~ 162 (184)
++..
T Consensus 366 ~l~~ 369 (406)
T PRK15427 366 AFSQ 369 (406)
T ss_pred HHHh
Confidence 8654
No 374
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=22.81 E-value=1.8e+02 Score=24.76 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH-HCCCeEEEcCCCcchhHHHHHHHHhc--CCeEEEEecCc
Q 044681 30 KAAIDLGNELV-SKGLDLVYGGGNVGLMGLISEEVHRG--RRHVLGIIPRA 77 (184)
Q Consensus 30 ~~A~~lG~~LA-~~G~~lV~GGg~~GlM~a~a~ga~~~--GG~viGviP~~ 77 (184)
..+.|+-+.+. .-.+.++.-|+. |++..++++.++. .=+++||-|..
T Consensus 148 t~~~Ei~~ql~~~~d~vv~~~G~G-g~~~Gi~~~~~~~~~~~~vi~Ve~~~ 197 (291)
T cd01561 148 TTAPEIWEQLDGKVDAFVAGVGTG-GTITGVARYLKEKNPNVRIVGVDPVG 197 (291)
T ss_pred HHHHHHHHHcCCCCCEEEEeCChH-HHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 55666666665 246777777777 9999999999886 44899997753
No 375
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.81 E-value=1.5e+02 Score=25.87 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=33.9
Q ss_pred cCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHH
Q 044681 9 SRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLIS 60 (184)
Q Consensus 9 ~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a 60 (184)
...+.|.|-|.|+-+ ...+|++.++++||.++--....--|.-.+
T Consensus 5 ~~~k~VlItgcs~GG-------IG~ala~ef~~~G~~V~AtaR~~e~M~~L~ 49 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGG-------IGYALAKEFARNGYLVYATARRLEPMAQLA 49 (289)
T ss_pred cCCCeEEEeecCCcc-------hhHHHHHHHHhCCeEEEEEccccchHhhHH
Confidence 456789999988866 345677778999999998877766676554
No 376
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=22.79 E-value=1.9e+02 Score=24.65 Aligned_cols=47 Identities=9% Similarity=0.126 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHH-HCCCeEEEcCCCcchhHHHHHHHHhcC--CeEEEEecC
Q 044681 29 RKAAIDLGNELV-SKGLDLVYGGGNVGLMGLISEEVHRGR--RHVLGIIPR 76 (184)
Q Consensus 29 ~~~A~~lG~~LA-~~G~~lV~GGg~~GlM~a~a~ga~~~G--G~viGviP~ 76 (184)
...+.|+-+.+. .-.+.++.-|++ |++..++++.++.+ -++|||-|.
T Consensus 150 ~t~~~Ei~~q~~~~~d~vv~~vG~G-g~~~Gi~~~~~~~~~~~~vi~Ve~~ 199 (298)
T TIGR01139 150 KTTGPEIWRDTDGKLDAFVAGVGTG-GTITGVGEVLKEQKPNIKIVAVEPA 199 (298)
T ss_pred HHHHHHHHHHhCCCCCEEEEecchh-HhHHHHHHHHHhcCCCCEEEEEecC
Confidence 346666666654 245667777776 99999999998843 489999774
No 377
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.71 E-value=1.6e+02 Score=24.29 Aligned_cols=45 Identities=18% Similarity=0.076 Sum_probs=30.8
Q ss_pred ccccccCCceEEEEcCCCCCC--ChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 4 KKEAKSRFKRVCVFCGSSPDY--KYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 4 ~~~~~~~~~~I~Vfggs~~~~--~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
|.+.+++...+-||||++.-. ...-.+-++..=+.|.++|+.|+.
T Consensus 84 ~~Ga~~~~l~aKifGGA~m~~~~~~IG~rNi~~a~~~L~~~gI~i~a 130 (184)
T PRK13497 84 KQGARRDRLEAKIFGGAKTIATFSNVGEQNAAFAMQFLRDEGIPVVG 130 (184)
T ss_pred HcCCCHHHEEEEEEeCchhccccccHHHHHHHHHHHHHHHcCCcEEE
Confidence 456667778999999998432 223344455555678999999983
No 378
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=22.59 E-value=2.1e+02 Score=24.35 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=34.3
Q ss_pred HHHhCCEEEEecC--ccccHHHHHHHHHHHHhCCCCCCEEE-----------------EEEecCCHHHHHHHhhhhcCC
Q 044681 104 MARYADCFIVLPG--GFGTLEKLFEVTTWSQLGVHNKPVAI-----------------IMVSASNAKELVQKLEDYEPS 163 (184)
Q Consensus 104 m~~~sDa~IvlPG--G~GTL~El~~~l~~~qlg~~~kPvvl-----------------~i~~~~~~~e~~~~l~~~~~~ 163 (184)
+...||++|...- |+|. =+.|+++. ++|||. .++-..|++++.+.|..+...
T Consensus 275 ~~~~ad~~v~~S~~Eg~~~--~~lEAma~------G~PvI~~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 275 VYQKAQLSLLTSQSEGFGL--SLMEALSH------GLPVISYDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred HHhhhhEEEecccccccCh--HHHHHHhC------CCCEEEecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 4467998887652 3442 25666654 788886 333335899999999887543
No 379
>PRK11096 ansB L-asparaginase II; Provisional
Probab=22.56 E-value=1.1e+02 Score=27.42 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=27.1
Q ss_pred HhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 106 RYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 106 ~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
+..|+|||.- |.=||+|.+..+++. ++ ..||||+
T Consensus 99 ~~~dGiVVtH-GTDTme~tA~~Ls~~-~~-~~kPVVl 132 (347)
T PRK11096 99 DKTDGFVITH-GTDTMEETAYFLDLT-VK-CDKPVVL 132 (347)
T ss_pred CCCCEEEEeC-CCchHHHHHHHHHHh-cc-CCCCEEE
Confidence 3467888876 478999999999885 44 4899999
No 380
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.53 E-value=4e+02 Score=21.15 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYG 49 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~G 49 (184)
+++.|.|+++ ...+++.+.|+++|+.++..
T Consensus 5 ~~vlItGa~g--------~iG~~~a~~l~~~g~~v~~~ 34 (250)
T PRK08063 5 KVALVTGSSR--------GIGKAIALRLAEEGYDIAVN 34 (250)
T ss_pred CEEEEeCCCc--------hHHHHHHHHHHHCCCEEEEE
Confidence 5788888875 36777888888899987653
No 381
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.52 E-value=1.5e+02 Score=25.91 Aligned_cols=50 Identities=26% Similarity=0.256 Sum_probs=31.7
Q ss_pred hCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE------EEEecCCHHHHHHHhhhhcC
Q 044681 107 YADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI------IMVSASNAKELVQKLEDYEP 162 (184)
Q Consensus 107 ~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl------~i~~~~~~~e~~~~l~~~~~ 162 (184)
.+|.+ +.-||=||+.+.+..+. ..+.||+- .+...-+++++.+.|++...
T Consensus 62 ~~d~v-i~~GGDGt~l~~~~~~~-----~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 62 VCDLV-IVVGGDGSLLGAARALA-----RHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLD 117 (295)
T ss_pred CCCEE-EEEeCcHHHHHHHHHhc-----CCCCCEEEEeCCcccccccCCHHHHHHHHHHHHc
Confidence 45655 55588999998876542 34678764 23334467777777776543
No 382
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=22.51 E-value=2.6e+02 Score=24.28 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHC-CCeEEEcCCCcchhHHHHHHHHhcCCeEE
Q 044681 26 YCYRKAAIDLGNELVSK-GLDLVYGGGNVGLMGLISEEVHRGRRHVL 71 (184)
Q Consensus 26 ~~~~~~A~~lG~~LA~~-G~~lV~GGg~~GlM~a~a~ga~~~GG~vi 71 (184)
-.|.+.|-.+..-+|.+ |+-|.-|--+ |-|+.+.+.|.++||..+
T Consensus 91 ~~~Lr~A~~fVa~vA~r~GiILFv~tn~-~~~~~ve~aA~r~~gy~~ 136 (251)
T KOG0832|consen 91 ASYLRRALNFVAHVAHRGGIILFVGTNN-GFKDLVERAARRAGGYSH 136 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCc-chHHHHHHHHHHhcCcee
Confidence 46889999999999986 5666666666 999999999999998654
No 383
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=22.47 E-value=4.2e+02 Score=21.44 Aligned_cols=57 Identities=23% Similarity=0.218 Sum_probs=38.6
Q ss_pred HHHHHHHHhCCEEEEecC-----ccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHh
Q 044681 99 QRKAEMARYADCFIVLPG-----GFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKL 157 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlPG-----G~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l 157 (184)
+...-+...||++|.... |.+.-.-+.|++.. ++||+. .++..+|++++.+.|
T Consensus 286 ~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~------G~pvi~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i 359 (394)
T cd03794 286 EELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAA------GKPVLASVDGESAELVEEAGAGLVVPPGDPEALAAAI 359 (394)
T ss_pred HHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHC------CCcEEEecCCCchhhhccCCcceEeCCCCHHHHHHHH
Confidence 344456688999886543 33334446777764 889988 334446899999999
Q ss_pred hhhc
Q 044681 158 EDYE 161 (184)
Q Consensus 158 ~~~~ 161 (184)
.+..
T Consensus 360 ~~~~ 363 (394)
T cd03794 360 LELL 363 (394)
T ss_pred HHHH
Confidence 8875
No 384
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=22.47 E-value=1.3e+02 Score=25.75 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=71.0
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE-cCCCcchhHHHH-------HHHHhcCCeE---------
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY-GGGNVGLMGLIS-------EEVHRGRRHV--------- 70 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~-GGg~~GlM~a~a-------~ga~~~GG~v--------- 70 (184)
++.+++|+|+|... ....++..++.+|+.++- -=-+ --.+.+. +...+.|...
T Consensus 2 ~~~~~~V~ViGaG~---------mG~~iA~~~a~~G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~ 71 (286)
T PRK07819 2 SDAIQRVGVVGAGQ---------MGAGIAEVCARAGVDVLVFETTE-ELATAGRNRIEKSLERAVSRGKLTERERDAALA 71 (286)
T ss_pred CCCccEEEEEcccH---------HHHHHHHHHHhCCCEEEEEECCH-HHHHHHHHHHHHHHHHHHhcccCChhhHHHHHh
Confidence 45677999999754 455667778889998873 3333 2222111 0112222210
Q ss_pred -EEEecCccccccccCCCCceEee---cCChHHHHHHHH---H---hCCEEEEecCccccHHHHHHHHHHHH--hCCC--
Q 044681 71 -LGIIPRALMKKELTGVTLGEVKP---VDHMHQRKAEMA---R---YADCFIVLPGGFGTLEKLFEVTTWSQ--LGVH-- 136 (184)
Q Consensus 71 -iGviP~~~~~~e~~~~~~~~~~~---~~~~~~Rk~~m~---~---~sDa~IvlPGG~GTL~El~~~l~~~q--lg~~-- 136 (184)
+-+..+. . .. ... ++++ +++....+.++. . ..|++++-.-..=..+++.......+ +|.|
T Consensus 72 ~l~~~~~~-~--~~--~~~-d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~ 145 (286)
T PRK07819 72 RLRFTTDL-G--DF--ADR-QLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFF 145 (286)
T ss_pred CeEeeCCH-H--Hh--CCC-CEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecC
Confidence 1111111 0 11 111 2332 566665555422 2 23677777777778888887665432 2322
Q ss_pred C-C---CEEEEEEecCCHHHHHHHhhhh
Q 044681 137 N-K---PVAIIMVSASNAKELVQKLEDY 160 (184)
Q Consensus 137 ~-k---Pvvl~i~~~~~~~e~~~~l~~~ 160 (184)
+ . |.+=++....+.+++++.+..+
T Consensus 146 ~P~~~~~lvElv~~~~T~~~~~~~~~~~ 173 (286)
T PRK07819 146 NPVPVLPLVELVPTLVTSEATVARAEEF 173 (286)
T ss_pred CCcccCceEEEeCCCCCCHHHHHHHHHH
Confidence 2 1 2221455557778888777776
No 385
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=22.47 E-value=1.6e+02 Score=25.18 Aligned_cols=47 Identities=6% Similarity=0.074 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHH-HCCCeEEEcCCCcchhHHHHHHHHhcC--CeEEEEecC
Q 044681 29 RKAAIDLGNELV-SKGLDLVYGGGNVGLMGLISEEVHRGR--RHVLGIIPR 76 (184)
Q Consensus 29 ~~~A~~lG~~LA-~~G~~lV~GGg~~GlM~a~a~ga~~~G--G~viGviP~ 76 (184)
...+.|+-+.+. +-++.++.-|++ |+...++++.++.+ =+++||-|.
T Consensus 150 ~t~~~Ei~~ql~~~~d~iv~~vG~G-g~~~G~~~~~~~~~~~~~vi~Ve~~ 199 (299)
T TIGR01136 150 KTTGPEIWRDTDGRIDHFVAGVGTG-GTITGVGRYLKEQNPNIKIVAVEPA 199 (299)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCchh-HHHHHHHHHHHHhCCCCEEEEEecC
Confidence 345666666664 345666666666 88888899888754 488999774
No 386
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=22.47 E-value=1.6e+02 Score=22.09 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=5.1
Q ss_pred EEEEecCccc
Q 044681 110 CFIVLPGGFG 119 (184)
Q Consensus 110 a~IvlPGG~G 119 (184)
..|++.||.+
T Consensus 36 ~~ii~sGg~~ 45 (150)
T cd06259 36 PKLIVSGGQG 45 (150)
T ss_pred CEEEEcCCCC
Confidence 3455555554
No 387
>PRK06739 pyruvate kinase; Validated
Probab=22.45 E-value=3.8e+02 Score=24.28 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHhCCEEEEecCcccc---HHHHHHHHHHH-H-hCCCCCCEEE
Q 044681 101 KAEMARYADCFIVLPGGFGT---LEKLFEVTTWS-Q-LGVHNKPVAI 142 (184)
Q Consensus 101 k~~m~~~sDa~IvlPGG~GT---L~El~~~l~~~-q-lg~~~kPvvl 142 (184)
-.-+++.||++.+--|=.|. ++++..+-... + -..++|||++
T Consensus 223 l~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIv 269 (352)
T PRK06739 223 FQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVIT 269 (352)
T ss_pred HHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 34566789999999999998 77776543322 1 1246899998
No 388
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=22.44 E-value=1.9e+02 Score=19.57 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=14.2
Q ss_pred CcchhHHHHHHHHhcCCeEEEE
Q 044681 52 NVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 52 ~~GlM~a~a~ga~~~GG~viGv 73 (184)
..|+..++++-..+.|+...-+
T Consensus 11 r~GiVa~vs~~la~~g~nI~d~ 32 (77)
T cd04893 11 RPGILNELTRAVSESGCNILDS 32 (77)
T ss_pred CChHHHHHHHHHHHcCCCEEEc
Confidence 3477777777666777665554
No 389
>PLN02583 cinnamoyl-CoA reductase
Probab=22.40 E-value=1.5e+02 Score=24.98 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=0.0
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
+...++|+|.|++.. ..+.+.+.|.++||.|+
T Consensus 3 ~~~~k~vlVTGatG~--------IG~~lv~~Ll~~G~~V~ 34 (297)
T PLN02583 3 DESSKSVCVMDASGY--------VGFWLVKRLLSRGYTVH 34 (297)
T ss_pred CCCCCEEEEECCCCH--------HHHHHHHHHHhCCCEEE
No 390
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=22.23 E-value=2.1e+02 Score=22.27 Aligned_cols=56 Identities=14% Similarity=0.338 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCEEEEecCc--cccHHHHHHHHHHHHhCCCCCCEEE--------------------EEEecCCHHHHHH
Q 044681 98 HQRKAEMARYADCFIVLPGG--FGTLEKLFEVTTWSQLGVHNKPVAI--------------------IMVSASNAKELVQ 155 (184)
Q Consensus 98 ~~Rk~~m~~~sDa~IvlPGG--~GTL~El~~~l~~~qlg~~~kPvvl--------------------~i~~~~~~~e~~~ 155 (184)
......++..||.+++-.=- -||+++|.+... ..+++++ .=..+.|++.+++
T Consensus 53 ~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~------~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~v~d~~~~~~ 126 (147)
T PF04016_consen 53 DEDAEEILPWADVVIITGSTLVNGTIDDILELAR------NAREVILYGPSAPLHPEALFDYGVTYVGGSRVVDPEKVLR 126 (147)
T ss_dssp GGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT------TSSEEEEESCCGGS-GGGGCCTT-SEEEEEEES-HHHHHH
T ss_pred HHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc------cCCeEEEEecCchhhHHHHHhCCCCEEEEEEEeCHHHHHH
Confidence 55677888999998876522 289999887553 2466666 2223568999999
Q ss_pred Hhhh
Q 044681 156 KLED 159 (184)
Q Consensus 156 ~l~~ 159 (184)
.+++
T Consensus 127 ~i~~ 130 (147)
T PF04016_consen 127 AISE 130 (147)
T ss_dssp HHCT
T ss_pred HHHc
Confidence 9986
No 391
>PRK10537 voltage-gated potassium channel; Provisional
Probab=22.22 E-value=6e+02 Score=23.14 Aligned_cols=105 Identities=13% Similarity=0.099 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCCh---HHHHHHHHHhCCEEEEecCcc
Q 044681 42 KGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHM---HQRKAEMARYADCFIVLPGGF 118 (184)
Q Consensus 42 ~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~---~~Rk~~m~~~sDa~IvlPGG~ 118 (184)
++|.+|||.|+.| ..+++.-.+.|-.++-|-++.. . +...+.+ + .+..+- ..=++.=++.|+++|++..--
T Consensus 240 k~HvII~G~g~lg--~~v~~~L~~~g~~vvVId~d~~-~-~~~~~g~-~-vI~GD~td~e~L~~AgI~~A~aVI~~t~dD 313 (393)
T PRK10537 240 KDHFIICGHSPLA--INTYLGLRQRGQAVTVIVPLGL-E-HRLPDDA-D-LIPGDSSDSAVLKKAGAARARAILALRDND 313 (393)
T ss_pred CCeEEEECCChHH--HHHHHHHHHCCCCEEEEECchh-h-hhccCCC-c-EEEeCCCCHHHHHhcCcccCCEEEEcCCCh
Confidence 6999999998844 4466666667777776655421 1 1111122 2 233233 223333456789999987652
Q ss_pred ccHHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhh
Q 044681 119 GTLEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLED 159 (184)
Q Consensus 119 GTL~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~ 159 (184)
-+-++-+++.++++. +.+++. .++|++. .+.+++
T Consensus 314 --~~Nl~ivL~ar~l~p-~~kIIa---~v~~~~~-~~~L~~ 347 (393)
T PRK10537 314 --ADNAFVVLAAKEMSS-DVKTVA---AVNDSKN-LEKIKR 347 (393)
T ss_pred --HHHHHHHHHHHHhCC-CCcEEE---EECCHHH-HHHHHh
Confidence 233444455555552 234443 2344433 344444
No 392
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=22.22 E-value=7.5e+02 Score=24.26 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHC-CCeEEEcCCCcc---hhHHHHHHHHhc--CCeEEEEecCccccccccCCCCceEeecCChHHHHHH
Q 044681 30 KAAIDLGNELVSK-GLDLVYGGGNVG---LMGLISEEVHRG--RRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAE 103 (184)
Q Consensus 30 ~~A~~lG~~LA~~-G~~lV~GGg~~G---lM~a~a~ga~~~--GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~ 103 (184)
..|.++.+...+. +..++||..++| |+-|++..+.+. |..|+-+..+.+. .+.. .-+....+..-+..
T Consensus 301 aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~-~el~-----~al~~~~~~~f~~~ 374 (617)
T PRK14086 301 AAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT-NEFI-----NSIRDGKGDSFRRR 374 (617)
T ss_pred HHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHH-----HHHHhccHHHHHHH
Confidence 4555544432221 334777765545 999999988763 5556555322211 0100 00001112111111
Q ss_pred HHHhCCEEEE-----ecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 104 MARYADCFIV-----LPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 104 m~~~sDa~Iv-----lPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
....|.+|+ +.|--.|-+|||.++.... ..+|+|++
T Consensus 375 -y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~III 415 (617)
T PRK14086 375 -YREMDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVL 415 (617)
T ss_pred -hhcCCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEE
Confidence 345676554 4455567788888775543 34688887
No 393
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=22.15 E-value=3.9e+02 Score=20.88 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEc
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYG 49 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~G 49 (184)
++|.|.|++. -....+.+.|+++|+.++.=
T Consensus 6 ~~ilItGasg--------~iG~~l~~~l~~~g~~v~~~ 35 (246)
T PRK05653 6 KTALVTGASR--------GIGRAIALRLAADGAKVVIY 35 (246)
T ss_pred CEEEEECCCc--------HHHHHHHHHHHHCCCEEEEE
Confidence 5788999865 36777888888899986533
No 394
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=22.08 E-value=1.7e+02 Score=23.74 Aligned_cols=39 Identities=26% Similarity=0.164 Sum_probs=23.7
Q ss_pred EEcCCCCCCChHHHHHHHHHHHHHHH-CCCeEEEcCCCcch
Q 044681 16 VFCGSSPDYKYCYRKAAIDLGNELVS-KGLDLVYGGGNVGL 55 (184)
Q Consensus 16 Vfggs~~~~~~~~~~~A~~lG~~LA~-~G~~lV~GGg~~Gl 55 (184)
=||||.....+.+.+.++.+.++-.. ....||.|||. +.
T Consensus 3 KiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~-~~ 42 (248)
T cd02115 3 KFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGP-QI 42 (248)
T ss_pred eeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCC-Cc
Confidence 37888876444555555555543322 34678889887 44
No 395
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=22.06 E-value=3.8e+02 Score=22.43 Aligned_cols=17 Identities=24% Similarity=0.131 Sum_probs=10.0
Q ss_pred CCHHHHHHHhhhhcCCC
Q 044681 148 SNAKELVQKLEDYEPSH 164 (184)
Q Consensus 148 ~~~~e~~~~l~~~~~~~ 164 (184)
...++++++|.++.|+.
T Consensus 150 ~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPEG 166 (270)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 45666666666655443
No 396
>PRK08339 short chain dehydrogenase; Provisional
Probab=22.02 E-value=1.4e+02 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
+.+.|.|+++. ..+++++.|+++|+.|+.-+
T Consensus 9 k~~lItGas~g--------IG~aia~~l~~~G~~V~~~~ 39 (263)
T PRK08339 9 KLAFTTASSKG--------IGFGVARVLARAGADVILLS 39 (263)
T ss_pred CEEEEeCCCCc--------HHHHHHHHHHHCCCEEEEEe
Confidence 46667776652 56667777788888876544
No 397
>PRK06841 short chain dehydrogenase; Provisional
Probab=21.94 E-value=1.6e+02 Score=23.65 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
++|.|.|++. ....++.+.|+++|+.|+
T Consensus 16 k~vlItGas~--------~IG~~la~~l~~~G~~Vi 43 (255)
T PRK06841 16 KVAVVTGGAS--------GIGHAIAELFAAKGARVA 43 (255)
T ss_pred CEEEEECCCC--------hHHHHHHHHHHHCCCEEE
No 398
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=21.87 E-value=2.6e+02 Score=19.19 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=15.4
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGL 44 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~ 44 (184)
-+.|.|||.+.. .+...++.|.+.|+
T Consensus 54 ~~~iv~~c~~g~--------~s~~~~~~L~~~g~ 79 (99)
T cd01527 54 ANAIIFHCRSGM--------RTQQNAERLAAISA 79 (99)
T ss_pred CCcEEEEeCCCc--------hHHHHHHHHHHcCC
Confidence 357788887642 24445556666665
No 399
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=21.80 E-value=2.4e+02 Score=19.47 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=16.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCe
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLD 45 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~ 45 (184)
+.|.|||.+.. .+...++.|.+.||.
T Consensus 62 ~~ivv~C~~G~--------rs~~aa~~L~~~G~~ 87 (100)
T cd01523 62 QEVTVICAKEG--------SSQFVAELLAERGYD 87 (100)
T ss_pred CeEEEEcCCCC--------cHHHHHHHHHHcCce
Confidence 46788886542 234555567777887
No 400
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=21.79 E-value=83 Score=21.85 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=18.6
Q ss_pred EEEecCCHHHHHHHhhhhcCCCC
Q 044681 143 IMVSASNAKELVQKLEDYEPSHD 165 (184)
Q Consensus 143 ~i~~~~~~~e~~~~l~~~~~~~~ 165 (184)
.+++-+|.||+++.+.+|+....
T Consensus 37 kyvVkEsveEVi~kI~~y~rkI~ 59 (67)
T COG1582 37 KYVVKESVEEVINKIIEYRRKIG 59 (67)
T ss_pred EEEEcccHHHHHHHHHHHHHHhh
Confidence 45668899999999999976544
No 401
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.79 E-value=92 Score=27.29 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=22.4
Q ss_pred HhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 106 RYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 106 ~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
+..|.+|++ ||=||+.+.+..+. ..++|++.
T Consensus 56 ~~~d~vi~~-GGDGT~l~~~~~~~-----~~~~pv~g 86 (305)
T PRK02645 56 ELIDLAIVL-GGDGTVLAAARHLA-----PHDIPILS 86 (305)
T ss_pred cCcCEEEEE-CCcHHHHHHHHHhc-----cCCCCEEE
Confidence 346777776 99999999887663 24677765
No 402
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.76 E-value=1.2e+02 Score=23.07 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCC----ceEeecCChHHHH
Q 044681 26 YCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTL----GEVKPVDHMHQRK 101 (184)
Q Consensus 26 ~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~----~~~~~~~~~~~Rk 101 (184)
+...+.+..+.+.+.+.|-..++|-|.++.+ +..-+.+.++. .++-|..+...-...+.. .+.-.-..+...-
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~--a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSAAI--ASHFAADLGGL-FGVNRILLPAIALNDDALTAISNDLEYDEGFARQL 95 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHHHH--HHHHHHHHHCH-SSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhhhH--HHHHHHHHhcC-cCCCcccccccccccchHhhhhcccchhhHHHHHH
Confidence 4556778888888888888889998764432 44455555543 111111110000000000 0000112333333
Q ss_pred HHH--HHhCCEEEEecCccccHH
Q 044681 102 AEM--ARYADCFIVLPGGFGTLE 122 (184)
Q Consensus 102 ~~m--~~~sDa~IvlPGG~GTL~ 122 (184)
.-. ....|.+|++..+-.|..
T Consensus 96 ~~~~~~~~gDvli~iS~SG~s~~ 118 (138)
T PF13580_consen 96 LALYDIRPGDVLIVISNSGNSPN 118 (138)
T ss_dssp HHHTT--TT-EEEEEESSS-SHH
T ss_pred HHHcCCCCCCEEEEECCCCCCHH
Confidence 334 677899999987666644
No 403
>PRK12367 short chain dehydrogenase; Provisional
Probab=21.73 E-value=1.3e+02 Score=24.82 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=16.4
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
+++.|.|+|+ -..+++.+.|+++|+.++.
T Consensus 15 k~~lITGas~--------gIG~ala~~l~~~G~~Vi~ 43 (245)
T PRK12367 15 KRIGITGASG--------ALGKALTKAFRAKGAKVIG 43 (245)
T ss_pred CEEEEEcCCc--------HHHHHHHHHHHHCCCEEEE
Confidence 4555666554 2445555566666666653
No 404
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=21.72 E-value=5e+02 Score=22.33 Aligned_cols=80 Identities=10% Similarity=0.086 Sum_probs=46.6
Q ss_pred HHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCC
Q 044681 60 SEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKP 139 (184)
Q Consensus 60 a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kP 139 (184)
.+-|.+.|..+|||- +..+.++.+-..-..|-.-++. .+.+++.-+|+.|.+++...... -.-
T Consensus 164 l~~a~~~ga~iiGIN----------nRdL~t~~vd~~~~~~L~~~ip-~~~~~IsESGI~t~~d~~~l~~~------~da 226 (247)
T PRK13957 164 AKLALDCGAEIIGIN----------TRDLDTFQIHQNLVEEVAAFLP-PNIVKVGESGIESRSDLDKFRKL------VDA 226 (247)
T ss_pred HHHHHhCCCCEEEEe----------CCCCccceECHHHHHHHHhhCC-CCcEEEEcCCCCCHHHHHHHHHh------CCE
Confidence 344667788888882 2223333332222344444443 57888889999999998775421 122
Q ss_pred EEE--EEEecCCHHHHHHH
Q 044681 140 VAI--IMVSASNAKELVQK 156 (184)
Q Consensus 140 vvl--~i~~~~~~~e~~~~ 156 (184)
+.+ .+...+||.+.+..
T Consensus 227 vLvG~~lm~~~d~~~~~~~ 245 (247)
T PRK13957 227 ALIGTYFMEKKDIRKAWLS 245 (247)
T ss_pred EEECHHHhCCCCHHHHHHH
Confidence 333 45566777776654
No 405
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=21.66 E-value=4.4e+02 Score=21.32 Aligned_cols=52 Identities=17% Similarity=0.040 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
|++.|.|+++- ..+.+++.|+++|+.++.-+.. .. +...+-..+.++++..+
T Consensus 9 k~~lItGas~g--------IG~aia~~l~~~G~~vv~~~~~-~~-~~~~~~~~~~~~~~~~~ 60 (251)
T PRK12481 9 KVAIITGCNTG--------LGQGMAIGLAKAGADIVGVGVA-EA-PETQAQVEALGRKFHFI 60 (251)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHCCCEEEEecCc-hH-HHHHHHHHHcCCeEEEE
No 406
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=21.51 E-value=3.2e+02 Score=23.40 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHHH----CCCeEEEcCCCcchhHHHHHHHHhcC--CeEEEEecC
Q 044681 26 YCYRKAAIDLGNELVS----KGLDLVYGGGNVGLMGLISEEVHRGR--RHVLGIIPR 76 (184)
Q Consensus 26 ~~~~~~A~~lG~~LA~----~G~~lV~GGg~~GlM~a~a~ga~~~G--G~viGviP~ 76 (184)
.-|...+.|+.+.+.. -.+.++.-|++ |.--.++++.++.+ -+++||-|.
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtG-gt~~G~~~~~~~~~~~~~ii~V~~~ 210 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTG-STHAGLSVGLAALGRQRRVIGIDAS 210 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCch-HHHHHHHHHHHhcCCCCeEEEEEec
Confidence 4456677777777764 24556655655 77777888887654 478999764
No 407
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.46 E-value=1.4e+02 Score=23.93 Aligned_cols=33 Identities=24% Similarity=0.153 Sum_probs=28.5
Q ss_pred HCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 41 SKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 41 ~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
+....+|+||.+ |+-..+++-..+.|-.|+.+.
T Consensus 10 ~~~~vlItGa~g-~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 10 DGLRVLVTGGAS-GIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred CCCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEe
Confidence 357789999998 999999999999998888875
No 408
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=21.39 E-value=1.5e+02 Score=26.13 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=25.3
Q ss_pred ccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 8 KSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 8 ~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
.+++++|+|+|+.+ ....++..|+++|..+++..
T Consensus 4 ~~~~mkI~IiGaGa---------~G~alA~~La~~g~v~l~~~ 37 (341)
T PRK12439 4 AKREPKVVVLGGGS---------WGTTVASICARRGPTLQWVR 37 (341)
T ss_pred ccCCCeEEEECCCH---------HHHHHHHHHHHCCCEEEEeC
Confidence 35668999999865 44567778889987777764
No 409
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=21.38 E-value=1.8e+02 Score=23.25 Aligned_cols=45 Identities=20% Similarity=0.039 Sum_probs=31.5
Q ss_pred ccccccCCceEEEEcCCCCCC---ChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 4 KKEAKSRFKRVCVFCGSSPDY---KYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 4 ~~~~~~~~~~I~Vfggs~~~~---~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
+.+.+++...+-||||++.-. ...=.+-++..=+.|+++|+.|+.
T Consensus 76 ~~Ga~~~~l~aKifGGA~m~~~~~~~IG~rNi~~a~~~L~~~gI~i~a 123 (159)
T PRK13495 76 KMGAKVERLEAKIAGGASMFESSGMNIGARNVEAVKKHLKDFGIKLVA 123 (159)
T ss_pred HcCCCHHHEEEEEEeCCccCCCCCCChHHHHHHHHHHHHHHcCCcEEE
Confidence 455666778999999998653 223344555555679999999994
No 410
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=21.31 E-value=4.3e+02 Score=21.37 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCEEEEecC--ccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 99 QRKAEMARYADCFIVLPG--GFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 99 ~Rk~~m~~~sDa~IvlPG--G~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
+...-+...||++|.-.. ++|+ =++|++.. ++||+.
T Consensus 270 ~~~~~~~~~ad~~l~~s~~e~~~~--~~~Ea~~~------g~PvI~ 307 (374)
T cd03817 270 EELPDYYKAADLFVFASTTETQGL--VLLEAMAA------GLPVVA 307 (374)
T ss_pred HHHHHHHHHcCEEEecccccCcCh--HHHHHHHc------CCcEEE
Confidence 444556678999775432 2332 25666654 889988
No 411
>PRK06381 threonine synthase; Validated
Probab=21.29 E-value=2e+02 Score=24.75 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHH-CCCeEEEcCCCcchhHHHHHHHHhc------C--CeEEEEecC
Q 044681 28 YRKAAIDLGNELVS-KGLDLVYGGGNVGLMGLISEEVHRG------R--RHVLGIIPR 76 (184)
Q Consensus 28 ~~~~A~~lG~~LA~-~G~~lV~GGg~~GlM~a~a~ga~~~------G--G~viGviP~ 76 (184)
|...+.|+-+.+.. -.+.++.-|++ |..-.++++.++. + =+++||-|.
T Consensus 152 ~~t~a~Ei~~ql~~~~D~vv~~vGtG-gt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~ 208 (319)
T PRK06381 152 YSAIAYEIYEALGDVPDAVAVPVGNG-TTLAGIYHGFRRLYDRGKTSRMPRMIGVSTS 208 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCCcc-HHHHHHHHHHHHHHhCCCcCCCCEEEEEeeC
Confidence 56677777777763 36667766666 8888889988875 3 378999764
No 412
>PRK07041 short chain dehydrogenase; Provisional
Probab=21.29 E-value=1.1e+02 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=8.0
Q ss_pred HHHHHHHHHHCCCeEEE
Q 044681 32 AIDLGNELVSKGLDLVY 48 (184)
Q Consensus 32 A~~lG~~LA~~G~~lV~ 48 (184)
.+.+.+.|+++|+.|+.
T Consensus 10 G~~~a~~l~~~G~~v~~ 26 (230)
T PRK07041 10 GLALARAFAAEGARVTI 26 (230)
T ss_pred HHHHHHHHHHCCCEEEE
Confidence 33444444555555443
No 413
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=21.23 E-value=1.6e+02 Score=25.10 Aligned_cols=44 Identities=25% Similarity=0.227 Sum_probs=21.6
Q ss_pred CceEEE-EcCCCCCCChH--HHHHHHHHHHHHH---HCCC--eEE-EcCCCcc
Q 044681 11 FKRVCV-FCGSSPDYKYC--YRKAAIDLGNELV---SKGL--DLV-YGGGNVG 54 (184)
Q Consensus 11 ~~~I~V-fggs~~~~~~~--~~~~A~~lG~~LA---~~G~--~lV-~GGg~~G 54 (184)
|+.|.| ||||....++. -.+.-+++.+.++ ++|+ .|| +|++..|
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g 61 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAG 61 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCccccc
Confidence 445555 99998763210 1233344444444 4554 343 6655433
No 414
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=21.16 E-value=2.6e+02 Score=21.95 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=17.5
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 10 RFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 10 ~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
..++|.|+||+. .---.+..++|.|+++|+.+..
T Consensus 24 ~~~~v~il~G~G-----nNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 24 KGPRVLILCGPG-----NNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp TT-EEEEEE-SS-----HHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEEECCC-----CChHHHHHHHHHHHHCCCeEEE
Confidence 345677777653 1112445566666677766543
No 415
>PRK08264 short chain dehydrogenase; Validated
Probab=21.15 E-value=1.9e+02 Score=22.91 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred cccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC-eEE
Q 044681 7 AKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGL-DLV 47 (184)
Q Consensus 7 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~-~lV 47 (184)
++-..++|.|.|+++ ...+++.+.|+++|+ .|+
T Consensus 2 ~~~~~~~vlItGgsg--------~iG~~la~~l~~~G~~~V~ 35 (238)
T PRK08264 2 MDIKGKVVLVTGANR--------GIGRAFVEQLLARGAAKVY 35 (238)
T ss_pred CCCCCCEEEEECCCc--------hHHHHHHHHHHHCCcccEE
No 416
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=21.12 E-value=94 Score=26.98 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=17.0
Q ss_pred CeEEEcCCCcchhHHHHHHHHh----cCCeEEEE
Q 044681 44 LDLVYGGGNVGLMGLISEEVHR----GRRHVLGI 73 (184)
Q Consensus 44 ~~lV~GGg~~GlM~a~a~ga~~----~GG~viGv 73 (184)
+.++++||++..|-++.+++.+ .|.+++|+
T Consensus 3 I~Il~sGG~apG~Na~i~~~v~~a~~~g~~v~g~ 36 (282)
T PF00365_consen 3 IAILTSGGDAPGMNAAIRGVVRYAIRRGWEVYGI 36 (282)
T ss_dssp EEEEEESS--TTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEEEecCCCchhhhHHHHHHHHHHHhcCCEEEEE
Confidence 3466666666666666555544 45566776
No 417
>PRK06398 aldose dehydrogenase; Validated
Probab=21.09 E-value=2.1e+02 Score=23.35 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=0.0
Q ss_pred cccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 7 AKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 7 ~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
++-+.++|.|.|+++ -..+++++.|+++|+.++.
T Consensus 2 ~~l~gk~vlItGas~--------gIG~~ia~~l~~~G~~Vi~ 35 (258)
T PRK06398 2 LGLKDKVAIVTGGSQ--------GIGKAVVNRLKEEGSNVIN 35 (258)
T ss_pred CCCCCCEEEEECCCc--------hHHHHHHHHHHHCCCeEEE
No 418
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=21.04 E-value=1.4e+02 Score=26.56 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=16.0
Q ss_pred eEEEcCCCcchhHHHHHHHHhcCCeEEEE
Q 044681 45 DLVYGGGNVGLMGLISEEVHRGRRHVLGI 73 (184)
Q Consensus 45 ~lV~GGg~~GlM~a~a~ga~~~GG~viGv 73 (184)
.+|+=..+.|+-...+..+.++|..||-.
T Consensus 68 D~vFla~p~~~s~~~v~~~~~~G~~VIDl 96 (336)
T PRK05671 68 QLAFFAAGAAVSRSFAEKARAAGCSVIDL 96 (336)
T ss_pred CEEEEcCCHHHHHHHHHHHHHCCCeEEEC
Confidence 33333333355555666667777777744
No 419
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=21.01 E-value=1.9e+02 Score=22.98 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKG 43 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G 43 (184)
++|++||.+....++.|++...+-.+.+-..+
T Consensus 68 KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~~ 99 (160)
T PF12641_consen 68 KKVALFGTAGAGPDSEYAKKILKNVEALLPKG 99 (160)
T ss_pred CeEEEEEecCCCCchHHHHHHHHHHHHhhccC
Confidence 68888888877777777776666656555555
No 420
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=20.97 E-value=2.7e+02 Score=25.37 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCCChHHHHHHHHHHHHHHHCCCeEEEcCCC---cchhHHHHHHHHhcCC-eEEEEe
Q 044681 22 PDYKYCYRKAAIDLGNELVSKGLDLVYGGGN---VGLMGLISEEVHRGRR-HVLGII 74 (184)
Q Consensus 22 ~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~---~GlM~a~a~ga~~~GG-~viGvi 74 (184)
.+.++.+.+.-+.+-..++++|+.||+++|. .++.+++.+-|.+.|= .-|+++
T Consensus 50 ~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V 106 (362)
T PF07287_consen 50 KGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLSLKVAVV 106 (362)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 4456677778888888899999999998775 4555666666666553 335555
No 421
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.96 E-value=1.2e+02 Score=25.56 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=26.9
Q ss_pred CeEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 44 LDLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 44 ~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
..+++|.|. |+=.+.++.-.++|.+||.+-
T Consensus 9 ~vlvTgaga-GIG~~~v~~La~aGA~ViAva 38 (245)
T KOG1207|consen 9 IVLVTGAGA-GIGKEIVLSLAKAGAQVIAVA 38 (245)
T ss_pred EEEeecccc-cccHHHHHHHHhcCCEEEEEe
Confidence 457899998 999999999999999999994
No 422
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=20.95 E-value=1.3e+02 Score=25.71 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
|+|-|+||.+ .+++|++.|.++|+.+++
T Consensus 1 m~ILvlgGTt---------E~r~la~~L~~~g~v~~s 28 (249)
T PF02571_consen 1 MKILVLGGTT---------EGRKLAERLAEAGYVIVS 28 (249)
T ss_pred CEEEEEechH---------HHHHHHHHHHhcCCEEEE
No 423
>PRK07201 short chain dehydrogenase; Provisional
Probab=20.89 E-value=4.2e+02 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=16.8
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
+++.|.|+++ -..+++.+.|+++|+.|+.-+
T Consensus 372 k~vlItGas~--------giG~~la~~l~~~G~~V~~~~ 402 (657)
T PRK07201 372 KVVLITGASS--------GIGRATAIKVAEAGATVFLVA 402 (657)
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHHCCCEEEEEE
Confidence 4555666554 244555555666666655433
No 424
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.84 E-value=3.7e+02 Score=22.51 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=33.4
Q ss_pred HHHHhCCEEEEec--CccccHHHHHHHHHHHHhCCCCCCEEE----------------EEEecCCHHHHHHHhhhhc
Q 044681 103 EMARYADCFIVLP--GGFGTLEKLFEVTTWSQLGVHNKPVAI----------------IMVSASNAKELVQKLEDYE 161 (184)
Q Consensus 103 ~m~~~sDa~IvlP--GG~GTL~El~~~l~~~qlg~~~kPvvl----------------~i~~~~~~~e~~~~l~~~~ 161 (184)
-+...||++|.-. .|+|.- +.|+++. ++||+. .++-.+|++++.+.+.+..
T Consensus 266 ~~~~~~d~~v~ps~~E~~~~~--~~EAma~------g~PvI~s~~~~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~ 334 (371)
T cd04962 266 ELLSIADLFLLPSEKESFGLA--ALEAMAC------GVPVVASNAGGIPEVVKHGETGFLVDVGDVEAMAEYALSLL 334 (371)
T ss_pred HHHHhcCEEEeCCCcCCCccH--HHHHHHc------CCCEEEeCCCCchhhhcCCCceEEcCCCCHHHHHHHHHHHH
Confidence 4457899987543 344432 5666654 789888 3333458999988887754
No 425
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=20.81 E-value=5.5e+02 Score=22.17 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=35.1
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCCeEEEEe-cCccccccccCCCCc-eEeecCChHHHHHHHHHhCCEEEEecCcccc
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRRHVLGII-PRALMKKELTGVTLG-EVKPVDHMHQRKAEMARYADCFIVLPGGFGT 120 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi-P~~~~~~e~~~~~~~-~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GT 120 (184)
--.+|.|.|..|. .+++.....|+..+-+. ++.....+.... +. ... .+...... +..+|.+|..-|...+
T Consensus 179 ~~V~ViGaG~iG~--~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g~~~~---~~~~~~~~-l~~aDvVi~at~~~~~ 251 (311)
T cd05213 179 KKVLVIGAGEMGE--LAAKHLAAKGVAEITIANRTYERAEELAKE-LGGNAV---PLDELLEL-LNEADVVISATGAPHY 251 (311)
T ss_pred CEEEEECcHHHHH--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cCCeEE---eHHHHHHH-HhcCCEEEECCCCCch
Confidence 3455567766443 23454555565555543 221111111111 11 111 23334443 4679999999998887
No 426
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.78 E-value=1.9e+02 Score=23.70 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=0.0
Q ss_pred ceEEEEcCCC-CCCChHHHHHHHHHHHHHHHCCCeEEEcC
Q 044681 12 KRVCVFCGSS-PDYKYCYRKAAIDLGNELVSKGLDLVYGG 50 (184)
Q Consensus 12 ~~I~Vfggs~-~~~~~~~~~~A~~lG~~LA~~G~~lV~GG 50 (184)
|.+.|.|+++ .+ ..+++++.|+++|+.++..+
T Consensus 8 k~~lItGa~~s~G-------IG~aia~~la~~G~~v~~~~ 40 (257)
T PRK08594 8 KTYVVMGVANKRS-------IAWGIARSLHNAGAKLVFTY 40 (257)
T ss_pred CEEEEECCCCCCC-------HHHHHHHHHHHCCCEEEEec
No 427
>PLN02778 3,5-epimerase/4-reductase
Probab=20.78 E-value=1.9e+02 Score=24.70 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=11.6
Q ss_pred ccccCCceEEEEcCCC
Q 044681 6 EAKSRFKRVCVFCGSS 21 (184)
Q Consensus 6 ~~~~~~~~I~Vfggs~ 21 (184)
+|.+..|+|.|.|++.
T Consensus 4 ~~~~~~~kiLVtG~tG 19 (298)
T PLN02778 4 TAGSATLKFLIYGKTG 19 (298)
T ss_pred CCCCCCCeEEEECCCC
Confidence 3456667899999875
No 428
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=20.73 E-value=4.2e+02 Score=20.70 Aligned_cols=94 Identities=14% Similarity=-0.001 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCeEEEcCCCcchhHHHHHHHHhcCCeEEEEecCcc--ccc--cccCCCCc-e----EeecCChHHHHH
Q 044681 32 AIDLGNELVSKGLDLVYGGGNVGLMGLISEEVHRGRRHVLGIIPRAL--MKK--ELTGVTLG-E----VKPVDHMHQRKA 102 (184)
Q Consensus 32 A~~lG~~LA~~G~~lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~--~~~--e~~~~~~~-~----~~~~~~~~~Rk~ 102 (184)
..++-+.|+..+..++..||. -++...++..+...|.+|-+-.... ..+ .....++. + ..+-.-+..|..
T Consensus 63 e~~~l~~l~~~~~~vi~~ggg-~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~ 141 (172)
T PRK05057 63 EEKVINELTEKQGIVLATGGG-SVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNP 141 (172)
T ss_pred HHHHHHHHHhCCCEEEEcCCc-hhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344444566555555544433 4666667777878888887742211 110 01111111 1 011223367777
Q ss_pred HHHHhCCEEEEecCccccHHHHHHHH
Q 044681 103 EMARYADCFIVLPGGFGTLEKLFEVT 128 (184)
Q Consensus 103 ~m~~~sDa~IvlPGG~GTL~El~~~l 128 (184)
+--+.||..|- ..--|.+|+.+.+
T Consensus 142 ~Y~~~Ad~~id--t~~~s~~ei~~~i 165 (172)
T PRK05057 142 LYEEIADVTIR--TDDQSAKVVANQI 165 (172)
T ss_pred HHHhhCCEEEE--CCCCCHHHHHHHH
Confidence 77666886654 4446788887654
No 429
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=20.72 E-value=6.2e+02 Score=22.70 Aligned_cols=30 Identities=37% Similarity=0.444 Sum_probs=19.7
Q ss_pred HHHHHhCCEEEEecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 102 AEMARYADCFIVLPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 102 ~~m~~~sDa~IvlPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
.-.+..||.+|.-.| .-| .|+. . .++|+|+
T Consensus 291 ~~~l~~ADlvI~rSG-t~T-~E~a---~------lg~P~Il 320 (396)
T TIGR03492 291 AEILHWADLGIAMAG-TAT-EQAV---G------LGKPVIQ 320 (396)
T ss_pred HHHHHhCCEEEECcC-HHH-HHHH---H------hCCCEEE
Confidence 345588999999866 344 4433 2 2788887
No 430
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=20.56 E-value=1.8e+02 Score=24.92 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHH-HCCCeEEEcCCCcchhHHHHHHHHhcC--CeEEEEecC
Q 044681 28 YRKAAIDLGNELV-SKGLDLVYGGGNVGLMGLISEEVHRGR--RHVLGIIPR 76 (184)
Q Consensus 28 ~~~~A~~lG~~LA-~~G~~lV~GGg~~GlM~a~a~ga~~~G--G~viGviP~ 76 (184)
|...+.|+-+.+. +-.+.++.-|++ |.+-.++++.++.+ =+++||=|.
T Consensus 149 ~~t~~~Ei~~q~~~~~d~iv~~vG~G-g~~~Gv~~~lk~~~~~~kvi~Vep~ 199 (290)
T TIGR01138 149 YTSTGPEIWQQTGGRITHFVSSMGTT-GTIMGVSRFLKEQNPPVQIVGLQPE 199 (290)
T ss_pred hHhHHHHHHHHcCCCCCEEEECCCch-HHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 3455666655554 234555555555 89988899988754 388999774
No 431
>PRK00942 acetylglutamate kinase; Provisional
Probab=20.52 E-value=1.6e+02 Score=25.12 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCC--eEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGL--DLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~--~lV~GGg~ 52 (184)
+.|.-||||....++.....++++. .|.+.|. .||.|||+
T Consensus 25 ~iViK~GGs~l~~~~~~~~l~~~i~-~l~~~g~~vVlVhGgg~ 66 (283)
T PRK00942 25 TIVIKYGGNAMTDEELKEAFARDIV-LLKQVGINPVVVHGGGP 66 (283)
T ss_pred eEEEEEChHHhcCcchHHHHHHHHH-HHHHCCCCEEEEeCChH
Confidence 4688899998765555555677766 4556654 67888876
No 432
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=20.48 E-value=1.8e+02 Score=23.45 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
++|.|.|+++. ...++.+.|+++|+.++.
T Consensus 7 ~~vlItGas~~--------iG~~ia~~l~~~G~~v~~ 35 (257)
T PRK07067 7 KVALLTGAASG--------IGEAVAERYLAEGARVVI 35 (257)
T ss_pred CEEEEeCCCch--------HHHHHHHHHHHcCCEEEE
No 433
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.47 E-value=1.3e+02 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.463 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
|+|-|+||+. + +++|++.|.+.|+.++
T Consensus 1 m~ILvlGGT~--------e-gr~la~~L~~~g~~v~ 27 (256)
T TIGR00715 1 MTVLLMGGTV--------D-SRAIAKGLIAQGIEIL 27 (256)
T ss_pred CeEEEEechH--------H-HHHHHHHHHhCCCeEE
Confidence 4788999864 2 7788888888888665
No 434
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=20.46 E-value=1.3e+02 Score=25.19 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=18.9
Q ss_pred EEcCCCCCCChHHHHHHHHHHHHHHH
Q 044681 16 VFCGSSPDYKYCYRKAAIDLGNELVS 41 (184)
Q Consensus 16 Vfggs~~~~~~~~~~~A~~lG~~LA~ 41 (184)
=||||...+.+.+.+.++.+.++..+
T Consensus 5 K~GGs~l~~~~~~~~~~~~I~~~~~~ 30 (244)
T cd04260 5 KFGGTSVSTKERREQVAKKVKQAVDE 30 (244)
T ss_pred EECchhcCCHHHHHHHHHHHHHHHHC
Confidence 38999987666677777777776654
No 435
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.45 E-value=1.6e+02 Score=24.13 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCCC
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGGN 52 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg~ 52 (184)
+++.|.|+++. ..+++.+.|+++|+.|+.-+..
T Consensus 11 ~~vlItGasgg--------IG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 11 QVAVVTGAGRG--------LGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred CEEEEECCCCh--------HHHHHHHHHHHCCCEEEEEeCC
Confidence 57888887652 5677778888889888754443
No 436
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.37 E-value=1.8e+02 Score=23.46 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
+++.|.|+++. ..+++++.|+++|+.++.
T Consensus 8 k~~lItGas~g--------IG~~~a~~l~~~G~~v~~ 36 (255)
T PRK06463 8 KVALITGGTRG--------IGRAIAEAFLREGAKVAV 36 (255)
T ss_pred CEEEEeCCCCh--------HHHHHHHHHHHCCCEEEE
No 437
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=20.34 E-value=1.9e+02 Score=24.95 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHHHHCCC---eEEEc-CCCcchhHHHHHHHHhcCC
Q 044681 24 YKYCYRKAAIDLGNELVSKGL---DLVYG-GGNVGLMGLISEEVHRGRR 68 (184)
Q Consensus 24 ~~~~~~~~A~~lG~~LA~~G~---~lV~G-Gg~~GlM~a~a~ga~~~GG 68 (184)
..+.+...-.++++.|++.|+ .+|+| ||..-+|+.+++-.....+
T Consensus 84 ~~~t~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 84 SPETLIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred cHHHHHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 456788899999999999988 44554 4456899999998888666
No 438
>PRK07063 short chain dehydrogenase; Provisional
Probab=20.30 E-value=1.7e+02 Score=23.66 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 12 KRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 12 ~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
+++.|.|+++. ..+++.+.|+++|+.|+
T Consensus 8 k~vlVtGas~g--------IG~~~a~~l~~~G~~vv 35 (260)
T PRK07063 8 KVALVTGAAQG--------IGAAIARAFAREGAAVA 35 (260)
T ss_pred CEEEEECCCch--------HHHHHHHHHHHCCCEEE
No 439
>PRK09072 short chain dehydrogenase; Provisional
Probab=20.28 E-value=1.6e+02 Score=24.01 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=26.6
Q ss_pred CCeEEEcCCCcchhHHHHHHHHhcCCeEEEEe
Q 044681 43 GLDLVYGGGNVGLMGLISEEVHRGRRHVLGII 74 (184)
Q Consensus 43 G~~lV~GGg~~GlM~a~a~ga~~~GG~viGvi 74 (184)
...||+||.. |+=.++++...+.|..|+.+-
T Consensus 6 ~~vlItG~s~-~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 6 KRVLLTGASG-GIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCCCEEEEEE
Confidence 4578999988 998999999999999888874
No 440
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=20.26 E-value=2.5e+02 Score=24.51 Aligned_cols=59 Identities=20% Similarity=0.162 Sum_probs=36.3
Q ss_pred EcCCCCCCChHHHHHHHHHHHHHHHC----CCeEEEcCCCcchhHHHHHHHHhcC--CeEEEEecC
Q 044681 17 FCGSSPDYKYCYRKAAIDLGNELVSK----GLDLVYGGGNVGLMGLISEEVHRGR--RHVLGIIPR 76 (184)
Q Consensus 17 fggs~~~~~~~~~~~A~~lG~~LA~~----G~~lV~GGg~~GlM~a~a~ga~~~G--G~viGviP~ 76 (184)
.+++++....-|++.+.|+.+.+.+. .+.++.-|++ |..-.++++....+ -+|+||-|.
T Consensus 156 ~~~~n~~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtG-Gt~aGi~~~lk~~~~~~kVigv~~~ 220 (329)
T PRK14045 156 PGGASPVGTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSG-GTLAGLSLGLAILNAEWRVVGIAVG 220 (329)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcH-HHHHHHHHHHHHhCCCCeEEEEEec
Confidence 34444333344567777888888742 4444444444 77777778776544 689999774
No 441
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=20.23 E-value=6.3e+02 Score=22.62 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=38.4
Q ss_pred HHHCCCeEEE---cCCC-cchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEEe
Q 044681 39 LVSKGLDLVY---GGGN-VGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVL 114 (184)
Q Consensus 39 LA~~G~~lV~---GGg~-~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~Ivl 114 (184)
|-..+..+|+ |||. +|+=-.+++-+.+.+-.+++|.|..+. .|. ......=..-...|.+.+|++|++
T Consensus 99 le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~-~Eg-------~~r~~nA~~~l~~L~~~~D~vivi 170 (349)
T TIGR00065 99 LEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFK-FEG-------LKRRKKAEEGLERLKQAVDTLIVI 170 (349)
T ss_pred HhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCcc-ccc-------hhhHHHHHHHHHHHHHhCCEEEEE
Confidence 3334554443 4433 577667788888888889999753221 110 000011123344566888988888
Q ss_pred c
Q 044681 115 P 115 (184)
Q Consensus 115 P 115 (184)
+
T Consensus 171 d 171 (349)
T TIGR00065 171 P 171 (349)
T ss_pred e
Confidence 7
No 442
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=20.20 E-value=2e+02 Score=27.60 Aligned_cols=36 Identities=17% Similarity=0.069 Sum_probs=23.8
Q ss_pred ccccccCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEE
Q 044681 4 KKEAKSRFKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVY 48 (184)
Q Consensus 4 ~~~~~~~~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~ 48 (184)
++.++-..++|+|+|+. +.++.+.+...+.|+.++.
T Consensus 15 ~~~~~~~~k~IgIIGgG---------qlg~mla~aA~~lG~~Vi~ 50 (577)
T PLN02948 15 KPVHGVSETVVGVLGGG---------QLGRMLCQAASQMGIKVKV 50 (577)
T ss_pred ccccCCCCCEEEEECCC---------HHHHHHHHHHHHCCCEEEE
Confidence 34444566899999987 4555566666666776663
No 443
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.20 E-value=5.7e+02 Score=22.05 Aligned_cols=61 Identities=21% Similarity=0.217 Sum_probs=36.8
Q ss_pred CChHHHHHHHHHhCCEEEEecCcccc-------HHHHHHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHh
Q 044681 95 DHMHQRKAEMARYADCFIVLPGGFGT-------LEKLFEVTTWSQLGVHNKPVAIIMVSASNAKELVQKL 157 (184)
Q Consensus 95 ~~~~~Rk~~m~~~sDa~IvlPGG~GT-------L~El~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l 157 (184)
.+-.+|-..+.+.|+.||-+..-.|+ .+++.+.+...+- ..++|+++.+= .++++++-+..
T Consensus 150 ~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~-~~~~Pv~vGFG-I~~~e~~~~~~ 217 (259)
T PF00290_consen 150 TTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKK-HTDLPVAVGFG-ISTPEQAKKLA 217 (259)
T ss_dssp TS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHH-TTSS-EEEESS-S-SHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHh-hcCcceEEecC-CCCHHHHHHHH
Confidence 46699999999999999998766664 3456655544322 23799998422 34555554443
No 444
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=20.18 E-value=1.7e+02 Score=28.92 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEE
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLV 47 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV 47 (184)
+++|+|++|....+.+.=...|+.+.+.|-+.||.++
T Consensus 451 ~~~i~vl~GG~S~E~~vSl~s~~~v~~al~~~~~~v~ 487 (809)
T PRK14573 451 KLSLGLVCGGKSCEHDISLLSAKNIAKYLSPEFYDVS 487 (809)
T ss_pred CcEEEEEECCCCCchHHHHHhHHHHHHhhcccCcEEE
Confidence 3467776666666666667889999999988898876
No 445
>PRK06182 short chain dehydrogenase; Validated
Probab=20.17 E-value=1.9e+02 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.070 Sum_probs=24.2
Q ss_pred CceEEEEcCCCCCCChHHHHHHHHHHHHHHHCCCeEEEcCC
Q 044681 11 FKRVCVFCGSSPDYKYCYRKAAIDLGNELVSKGLDLVYGGG 51 (184)
Q Consensus 11 ~~~I~Vfggs~~~~~~~~~~~A~~lG~~LA~~G~~lV~GGg 51 (184)
.++|.|.|+++ -..+++.+.|+++|+.|+.-+.
T Consensus 3 ~k~vlItGasg--------giG~~la~~l~~~G~~V~~~~r 35 (273)
T PRK06182 3 KKVALVTGASS--------GIGKATARRLAAQGYTVYGAAR 35 (273)
T ss_pred CCEEEEECCCC--------hHHHHHHHHHHHCCCEEEEEeC
Confidence 35788888765 2567788888889998875443
No 446
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=20.17 E-value=6.9e+02 Score=23.05 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHC-----CCeEEEcCCCcc---hhHHHHHHHHh--cCCeEEEEecCccccccccCCCCceEeecCChHHH
Q 044681 31 AAIDLGNELVSK-----GLDLVYGGGNVG---LMGLISEEVHR--GRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQR 100 (184)
Q Consensus 31 ~A~~lG~~LA~~-----G~~lV~GGg~~G---lM~a~a~ga~~--~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~R 100 (184)
.|...++.++++ +-.++||+-++| ||.|++....+ .+..|+-+.+..+.. +... .+... ...+.+.
T Consensus 125 ~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~-~l~~~--~~~~~~~ 200 (450)
T PRK14087 125 QAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVD-ILQKT--HKEIEQF 200 (450)
T ss_pred HHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHH-HHHHh--hhHHHHH
Confidence 355555555553 234578776655 89998886654 356666554322211 1000 00000 0112211
Q ss_pred HHHHHHhCCEEEE-----ecCccccHHHHHHHHHHHHhCCCCCCEEE
Q 044681 101 KAEMARYADCFIV-----LPGGFGTLEKLFEVTTWSQLGVHNKPVAI 142 (184)
Q Consensus 101 k~~m~~~sDa~Iv-----lPGG~GTL~El~~~l~~~qlg~~~kPvvl 142 (184)
+.. ....|.+|+ +.|--.|.+|+|..+.... ..++++++
T Consensus 201 ~~~-~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIl 244 (450)
T PRK14087 201 KNE-ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFF 244 (450)
T ss_pred HHH-hccCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEE
Confidence 111 245676653 4565678899998886643 23567766
No 447
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=20.13 E-value=5e+02 Score=21.62 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=33.8
Q ss_pred chhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEEecCccc--cHHHHHHHHHHH
Q 044681 54 GLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFG--TLEKLFEVTTWS 131 (184)
Q Consensus 54 GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~G--TL~El~~~l~~~ 131 (184)
=-|.-++++++..||..+ +. +..+...-+++.+|++++=+|-.. ..+.+..++.
T Consensus 18 ~~~~~~a~~~~~~g~~~~---~~-------------------~~~e~~~~~l~~~d~vvi~~G~l~~~~~~~i~~~~~-- 73 (242)
T cd01170 18 VVMNFVANVLLAIGASPI---MS-------------------DAPEEVEELAKIAGALVINIGTLTSEQIEAMLKAGK-- 73 (242)
T ss_pred hhHhHHHHHHHHhCCchh---hc-------------------CCHHHHHHHHHHcCcEEEeCCCCChHHHHHHHHHHH--
Confidence 357778888888777422 10 223334445678898888444322 1222222221
Q ss_pred HhCCCCCCEEE
Q 044681 132 QLGVHNKPVAI 142 (184)
Q Consensus 132 qlg~~~kPvvl 142 (184)
....+++|+++
T Consensus 74 ~~~~~~~pvVl 84 (242)
T cd01170 74 AANQLGKPVVL 84 (242)
T ss_pred HHHhcCCCEEE
Confidence 12234678877
No 448
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=20.01 E-value=7.1e+02 Score=23.61 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=49.6
Q ss_pred EEEcCCCcchhHHHHHHHHhcCCeEEEEecCccccccccCCCCceEeecCChHHHHHHHHHhCCEEEEecCccccHH-HH
Q 044681 46 LVYGGGNVGLMGLISEEVHRGRRHVLGIIPRALMKKELTGVTLGEVKPVDHMHQRKAEMARYADCFIVLPGGFGTLE-KL 124 (184)
Q Consensus 46 lV~GGg~~GlM~a~a~ga~~~GG~viGviP~~~~~~e~~~~~~~~~~~~~~~~~Rk~~m~~~sDa~IvlPGG~GTL~-El 124 (184)
+|.|.|+.| ..+++-++..|.+|+.+-+......+.....+ .+.++. -+++.||.||..+|..+.++ |.
T Consensus 258 gVIG~G~IG--r~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~----~~~~le----ell~~ADIVI~atGt~~iI~~e~ 327 (476)
T PTZ00075 258 VVCGYGDVG--KGCAQALRGFGARVVVTEIDPICALQAAMEGY----QVVTLE----DVVETADIFVTATGNKDIITLEH 327 (476)
T ss_pred EEECCCHHH--HHHHHHHHHCCCEEEEEeCCchhHHHHHhcCc----eeccHH----HHHhcCCEEEECCCcccccCHHH
Confidence 457777644 35667777788888776221111101001111 111332 24578999999998777775 55
Q ss_pred HHHHHHHHhCCCCCCEEEEEEecCCHHHHHHHhhh
Q 044681 125 FEVTTWSQLGVHNKPVAIIMVSASNAKELVQKLED 159 (184)
Q Consensus 125 ~~~l~~~qlg~~~kPvvl~i~~~~~~~e~~~~l~~ 159 (184)
+..+ ++-.++.-+-..+.+..++.|+.
T Consensus 328 ~~~M--------KpGAiLINvGr~d~Ei~i~aL~~ 354 (476)
T PTZ00075 328 MRRM--------KNNAIVGNIGHFDNEIQVAELEA 354 (476)
T ss_pred Hhcc--------CCCcEEEEcCCCchHHhHHHHHh
Confidence 5433 22233322222355555666654
Done!