BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044682
(755 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 247/670 (36%), Positives = 355/670 (52%), Gaps = 85/670 (12%)
Query: 111 TTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWR 170
TTRSWDFLG + + + ++++GV+D+G+WPES SF DEG P P +W+
Sbjct: 1 TTRSWDFLGFPL-------TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 171 GICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAAST 230
G C+ T F+CNRK+IG R Y+ G+ N RD +GHGTH AST
Sbjct: 54 GTCE--TSNNFRCNRKIIGARSYHIGRPISPGDVNG----------PRDTNGHGTHTAST 101
Query: 231 AVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDG 290
A G V+ +++G G GTA+GG P AR+A+YK CWN C D+DIL+A+DDAI DG
Sbjct: 102 AAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDG-----CSDTDILAAYDDAIADG 156
Query: 291 VDVLSVSLG--EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWL 348
VD++S+S+G P H YF DAIAIGSFHA+ GIL +AGN GP T +L+PWL
Sbjct: 157 VDIISLSVGGANPRH----YFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWL 212
Query: 349 LTVGASTMDREFTSYVTLGDEQIFKEI-------MQGPLTQHSMIGNLE--------CNP 393
L+V ASTMDR+F + V +G+ Q F+ + PL I N C
Sbjct: 213 LSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQYYPLVSGRDIPNTGFDKSTSRFCTD 272
Query: 394 GAIDPKKINGKILLCMNHTHGIDKSXXXXXXXXXXXILVNPKQLENESLPLPYHLPTSLV 453
+++P + GKI++C + G + + N + + Y LP+S++
Sbjct: 273 KSVNPNLLKGKIVVC-EASFGPHEFFKSLDGAAGVLMTSNTRDYADS-----YPLPSSVL 326
Query: 454 EFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAP 513
+ +D + + Y SI++P A++ T N +P + FSSRGP+ ++IKPDI+ P
Sbjct: 327 DPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGP 385
Query: 514 GVEIIAAYSEAVAPSKSPSDD--RRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAI 571
GVEI+AA+ PS +P R FN GTSMS PHI+GIA +KT +P WSPAAI
Sbjct: 386 GVEILAAW-----PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAI 440
Query: 572 KSAIMXXXXXXXXXGKNPITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYI 631
KSA+M NP + F YG+GHVNP A+ PGLVYD + DY+ ++
Sbjct: 441 KSALMTTASPMNAR-FNPQAE--------FAYGSGHVNPLKAVRPGLVYDANESDYVKFL 491
Query: 632 CSRGYNQSIINNFTTPEIHSCPK--SFSILDFNYPTIAI---PDLNESVTITRRVKNVGT 686
C +GYN + T + +C + + D NYP+ + P + R + +V
Sbjct: 492 CGQGYNTQAVRRITG-DYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAP 550
Query: 687 HNSSYEANXXXXXXXXXXXXPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIF-GKL 745
S+Y A PN LSF G+ ++F +T + + ++ L
Sbjct: 551 QASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTV--------RGSIKGFVVSASL 602
Query: 746 IWSDSDGLHH 755
+W SDG+H+
Sbjct: 603 VW--SDGVHY 610
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 330 bits (846), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 228/665 (34%), Positives = 342/665 (51%), Gaps = 52/665 (7%)
Query: 111 TTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWR 170
TT + DFL L + + W G+DVI+ V+DSG+WPES SF D+GM +P RW+
Sbjct: 1 TTHTSDFLKLNPSSGL-----WPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 171 GICQNDTHY-GFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAAS 229
GIC+ T + CNRKLIG Y+N+G + + N + ++ARD DGHGTH AS
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITM------NSARDTDGHGTHCAS 109
Query: 230 TAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289
GNF VS FG GTA+G +PRARLA YK +N SD+++A D A+ D
Sbjct: 110 ITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEG-----TFTSDLIAAMDQAVAD 164
Query: 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLL 349
GVD++S+S G ++ ++DAI+I SF AMM G+LV A+AGN GP ++ N +PW+L
Sbjct: 165 GVDMISISYG---YRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWIL 221
Query: 350 TVGASTMDREFTSYVTLGDEQIFKE---------IMQGPLTQHSMIGNLECNPGAIDPKK 400
V + DR F +TLG+ + + P+ + + + +
Sbjct: 222 CVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEELLSQVEN 281
Query: 401 INGKILLCMNHTHGIDKSXXXXXXXXXXXILV--NPKQLENESLPLPYHLPTSLVEFDDA 458
I++C ++ D+ I + +P + + P P +V +
Sbjct: 282 PENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFP----NPGVVVNKKEG 337
Query: 459 QSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEII 518
+ +I Y + P A+++ +T +TKP+P + S+RGPS I KPDI APGV I+
Sbjct: 338 KQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLIL 397
Query: 519 AAYSEAV-APSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMX 577
AAY V A S + + GTSM+ PH +GIA +LK HP+WSP+AI+SA+M
Sbjct: 398 AAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMT 457
Query: 578 XXXXXXXXGKNPITDYDGLK-ATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGY 636
K PI D D K ATP + GAGHV+PN A+DPGLVYD + DY++ +CS +
Sbjct: 458 TADPLDNTRK-PIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNF 516
Query: 637 NQSIINNFT-TPEIHSCPKSFSILDFNYPT-IAIPDLNESVTI-----TRRVKNVGTHNS 689
+ + H+C + D NYP+ IA+ + + T+ R V NVG +
Sbjct: 517 TEEQFKTIARSSASHNCSNPSA--DLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAA 574
Query: 690 SYEANXXXXXXXXXXXXPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSD 749
+Y+A P L F E++++ +T R + + ++ G + W +
Sbjct: 575 TYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTI---RYIGDEGQSRN--VGSITWVE 629
Query: 750 SDGLH 754
+G H
Sbjct: 630 QNGNH 634
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 26/164 (15%)
Query: 473 ASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPS 532
A+ S V T +T FSSRGP+ N +KP++ APG IIAA + + + P
Sbjct: 292 AAASKVITVGAVDKYDVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQ-PI 348
Query: 533 DDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITD 592
+D + A GT+M+TPH++GIA LL HP W+P +K+A++ + I D
Sbjct: 349 NDY---YTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVK---PDEIAD 402
Query: 593 YDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRGY 636
YGAG VN Y ++YD + + GY
Sbjct: 403 --------IAYGAGRVN---------AYKAAYYDNYAKLTFTGY 429
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 20/145 (13%)
Query: 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDC 274
+T D +GHGTH AS A G A+ G KG +P A+L K +NGQ
Sbjct: 172 TTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIKV---LNGQG-SG 220
Query: 275 RDSDILSAFDDAIHD----GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAA 330
SDI++ D A+ + G+ V+++SLG + D+++ +A G++VV A
Sbjct: 221 SISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGT---DSLSQAVNNAWDAGLVVVVA 277
Query: 331 AGNEGPKPDTVVN--LAPWLLTVGA 353
AGN GP TV + A ++TVGA
Sbjct: 278 AGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 149/381 (39%), Gaps = 68/381 (17%)
Query: 223 HGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSA 282
HGTH + GN + Y +G P A+L + VNG R+ A
Sbjct: 97 HGTHVSGILSGNAPSETK---EPY-RLEGAMPEAQLLLMR-VEIVNGLADYARN--YAQA 149
Query: 283 FDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNE---GPK-- 337
DA++ G V+++S G + D +A G+ +V +AGN+ G K
Sbjct: 150 IRDAVNLGAKVINMSFGNAALAYAN-LPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTR 208
Query: 338 ------PDTVVNLAPW----LLTVGASTMDREFTSYVTLG-DEQIFKE---IMQGPLTQH 383
PD V P LTV + + D++ T T+ D+ KE + +
Sbjct: 209 LPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEMPVLSTNRFEPN 268
Query: 384 SMIGNLECNPGAI--DPKKINGKILLCMNHTHGIDKSXXXXXXXXXXXILVNPKQLENES 441
N G D K + GKI L +L+ Q +
Sbjct: 269 KAYDYAYANRGMKEDDFKDVKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFP 328
Query: 442 LPLPY--HLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPS-------PQMTF 492
+ LP +P + + D ++ +NS K FN P +++
Sbjct: 329 IELPNVDQMPAAFISRKDG--LLLKDNSKKT---------ITFNATPKVLPTASDTKLSR 377
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FSS G T + NI KPDI APG +I+++ VA +K + GTSMS P +
Sbjct: 378 FSSWG-LTADGNI-KPDIAAPGQDILSS----VANNK---------YAKLSGTSMSAPLV 422
Query: 553 SGIAGLLK----TLHPDWSPA 569
+GI GLL+ T +PD +P+
Sbjct: 423 AGIMGLLQKQYETQYPDMTPS 443
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 81/362 (22%), Positives = 143/362 (39%), Gaps = 88/362 (24%)
Query: 277 SDILSAFDDAIHDG-VDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEG 335
S +++A D ++ G +V+++SLG TE ++A+ + H +G+L++AAAGN G
Sbjct: 108 SSLVAAIDTCVNSGGANVVTMSLGGSGSTTTE--RNAL---NTH-YNNGVLLIAAAGNAG 161
Query: 336 PKP-------DTVVNLAP------------WLLTVGASTMDREFTSYVTLGDEQIFKEIM 376
D+V+++A + V S S VT+G+ ++ +
Sbjct: 162 DSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGRLADITI 221
Query: 377 QG-PLTQHSMIGNLECNP---------------GAIDPKKINGKILLCMNHTHGIDKSXX 420
G + ++ + P GA+ +NG C N + I
Sbjct: 222 GGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKI----- 276
Query: 421 XXXXXXXXXILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKT 480
LV +++ N+ P T + A+ II Y+NS
Sbjct: 277 ---------CLV--ERVGNQGSSYPEINSTKACKTAGAKGIIVYSNS------------- 312
Query: 481 EFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAV----APSKSPSDDRR 536
P Q F ++ N DIT P V + A A+ S + S+
Sbjct: 313 ---ALPGLQNPFL-------VDAN---SDITVPSVSVDRATGLALKAKLGQSTTVSNQGN 359
Query: 537 IPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMXXXXXXXXXGKNPITDYDGL 596
+ GTSM+TPH+SG+A L+ + HP+ S + +++A+ G++ T Y +
Sbjct: 360 QDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGRDNQTGYGMI 419
Query: 597 KA 598
A
Sbjct: 420 NA 421
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 81/168 (48%), Gaps = 25/168 (14%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF ++T D +GHGTH A T V+ N G G +P L + K
Sbjct: 48 ASFVSGESYNT--DGNGHGTHVAGT--------VAALDNTTGV-LGVAPNVSLYAIK-VL 95
Query: 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325
N +G S I+S + A +G+DV+++SLG PS + K A+ A GI
Sbjct: 96 NSSGS---GSYSAIVSGIEWATQNGLDVINMSLGGPS--GSTALKQAVD----KAYASGI 146
Query: 326 LVVAAAGNEG--PKPDTVVNLAPW--LLTVGASTMDREFTSYVTLGDE 369
+VVAAAGN G +T+ A + ++ VGA ++ S+ ++G E
Sbjct: 147 VVVAAAGNSGNSGSQNTIGYPAKYDSVIAVGAVDSNKNRASFSSVGSE 194
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
++ APGV + + Y PS+ + + GTSM++PH++G A L+ + +P S
Sbjct: 196 EVMAPGVSVYSTY---------PSN----TYTSLNGTSMASPHVAGAAALILSKYPTLSA 242
Query: 569 AAIK 572
+ ++
Sbjct: 243 SQVR 246
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 211 TPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQ 270
TP +++ D +GHGTH A TA+ + ++ + YG A P A L +YK +
Sbjct: 59 TPINNSCTDRNGHGTHVAGTALADGGSDQAGI---YGVA----PDADLWAYKVLLDSGSG 111
Query: 271 PLDCRDSDILSAFDDAIHDGVD-VLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
D + I A D A G ++S+SLG S N A+ +A G+L+VA
Sbjct: 112 YSDDIAAAIRHAADQATATGTKTIISMSLG--SSANNSLISSAV----NYAYSKGVLIVA 165
Query: 330 AAGNEGPKPDTV 341
AAGN G T+
Sbjct: 166 AAGNSGYSQGTI 177
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 458 AQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRG-PSTINPNIIKP---DITAP 513
+Q I Y ++ N +A + + N + ++ +SSRG ST +I+ +I+AP
Sbjct: 173 SQGTIGYPGALPNAIAVAALENVQQN--GTYRVADYSSRGYISTAGDYVIQEGDIEISAP 230
Query: 514 GVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKS 573
G + + + +N GTSM+TPH+SG+A + +P S ++S
Sbjct: 231 GSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRS 277
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 211 TPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQ 270
TP +++ D +GHGTH A TA+ + ++ + YG A P A L +YK +
Sbjct: 59 TPINNSCTDRNGHGTHVAGTALADGGSDQAGI---YGVA----PDADLWAYKVLLDSGSG 111
Query: 271 PLDCRDSDILSAFDDAIHDGVD-VLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
D + I A D A G ++S+SLG S N A+ +A G+L+VA
Sbjct: 112 YSDDIAAAIRHAADQATATGTKTIISMSLG--SSANNSLISSAV----NYAYSKGVLIVA 165
Query: 330 AAGNEGPKPDTV 341
AAGN G T+
Sbjct: 166 AAGNSGYSQGTI 177
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 458 AQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRG-PSTINPNIIKP---DITAP 513
+Q I Y ++ N +A + + N + ++ +SSRG ST +I+ +I+AP
Sbjct: 173 SQGTIGYPGALPNAIAVAALENVQQN--GTYRVADYSSRGYISTAGDYVIQEGDIEISAP 230
Query: 514 GVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKS 573
G + + + +N GT M+TPH+SG+A + +P S ++S
Sbjct: 231 GSSVYSTWYNG-------------GYNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRS 277
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I+ S P + + A GT+
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSIV---------STLPGNK----YGAKSGTA 212
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I+ S P + + A GT+
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSIV---------STLPGNK----YGAKSGTA 212
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I S P + + A GTS
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTS 212
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I S P + + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIX---------STLPGNK----YGAYSGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +SF P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASFVPS-ETNPFQDNNSHGTHVAGT--------VAALDNSIGV-LGVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYNGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +S P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASMVPS-ETNPFQDNNSHGTHVAGT--------VAALNNSIGVL-GVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 28/105 (26%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GTSM+TPH++G+A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 569 AAIKSAIMXXXXXXXXXGKNPITDYDGLKATPFEYGAGHVNPNSA 613
I++ + KN T GL T YG+G VN +A
Sbjct: 238 VQIRNHL-----------KNTAT---GLGNTNL-YGSGLVNAEAA 267
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P E ST +D +GHGTH A T ++ N G G +P A L + K
Sbjct: 47 ASFVPG-EPST-QDGNGHGTHVAGT--------IAALNNSIGV-LGVAPSAELYAVK--- 92
Query: 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325
V G S I + A ++G+ V ++SLG PS T + A+ A G+
Sbjct: 93 -VLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSAT--LEQAV----NSATSRGV 145
Query: 326 LVVAAAGNEG 335
LVVAA+GN G
Sbjct: 146 LVVAASGNSG 155
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYNGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +S P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASMVPS-ETNPFQDNNSHGTHVAGT--------VAALNNSIGVL-GVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I S P + + A GTS
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTS 212
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I S P + + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIX---------STLPGNK----YGAYSGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +SF P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASFVPS-ETNPFQDNNSHGTHVAGT--------VAALDNSIGV-LGVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYNGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +S P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASMVPS-ETNPFQDNNSHGTHVAGT--------VAALNNSIGVL-GVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYNGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +S P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASMVPS-ETNPFQDNNSHGTHVAGT--------VAALNNSIGVL-GVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYNGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I S P + + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I S P + + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAKSGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP D+ APGV I S P + A GTS
Sbjct: 174 SNQRAPFSSVGPEL--------DVMAPGVSIC---------STLPGGK----YGALSGTS 212
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSL 241
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +SF P+ E + +D + HGTH A GT +P A L + K
Sbjct: 45 AGGASFVPS-ETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVK 85
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 86 ----VLGADGSGQASWIINGIEWAIANNMDVINMSLGSPS 121
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GT
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYSGTX 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +S P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASMVPS-ETNPFQDNNSHGTHVAGT--------VAALNNSIGVL-GVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GT
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYNGTX 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +S P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASMVPS-ETNPFQDNNSHGTHVAGT--------VAALNNSIGVL-GVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GT
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAKSGTX 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +SF P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASFVPS-ETNPFQDNNSHGTHVAGT--------VAALNNSIGVL-GVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 32/172 (18%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P+ E + +D HGTH A T ++ N G G SP A L + K
Sbjct: 48 ASFVPS-ETNPYQDGSSHGTHVAGT--------IAALNNSIGV-LGVSPSASLYAVK--- 94
Query: 266 NVNGQPLDCRDSD----ILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAM 321
LD S I++ + AI + +DV+++SLG P+ + K + A+
Sbjct: 95 -----VLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPT--GSTALKTVVD----KAV 143
Query: 322 MHGILVVAAAGNEGPKPDTVV----NLAPWLLTVGASTMDREFTSYVTLGDE 369
GI+V AAAGNEG T P + VGA + S+ + G E
Sbjct: 144 SSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSAGSE 195
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS G + D+ APGV I ++ P + + A GT
Sbjct: 183 SNQRASFSSAGS--------ELDVMAPGVSI-----QSTLPGGT--------YGAYNGTC 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIK 572
M+TPH++G A L+ + HP W+ A ++
Sbjct: 222 MATPHVAGAAALILSKHPTWTNAQVR 247
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GT
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYNGTX 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +S P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASMVPS-ETNPFQDNNSHGTHVAGT--------VAALNNSIGVL-GVAPSASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P E ST +D +GHGTH A T ++ N G G +P A L + K
Sbjct: 47 ASFVPG-EPST-QDGNGHGTHVAGT--------IAALDNSIGV-LGVAPSAELYAVK--- 92
Query: 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325
V G S I + A ++G+ V ++SLG PS T + A+ A G+
Sbjct: 93 -VLGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSAT--LEQAV----NSATSRGV 145
Query: 326 LVVAAAGNEG 335
LVVAA+GNEG
Sbjct: 146 LVVAASGNEG 155
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GT M+TPH++G A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 569 AAIK 572
I+
Sbjct: 238 VQIR 241
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GT
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYSGTX 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 MASPHVAGAAALILSKHPNWTNTQVRSSL 250
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +S P+ E + +D + HGTH A T V+ N G G +P A L + K
Sbjct: 45 AGGASMVPS-ETNPFQDNNSHGTHVAGT--------VAALNNSIGV-LGVAPCASLYAVK 94
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 95 ----VLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I S P + + A GT
Sbjct: 174 SNQRASFSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTX 212
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSL 241
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 76/172 (44%), Gaps = 32/172 (18%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P+ E + +D HGTH A T ++ N G G +P A L + K
Sbjct: 48 ASFVPS-ETNPYQDGSSHGTHVAGT--------IAALNNSIGV-LGVAPSASLYAVK--- 94
Query: 266 NVNGQPLDCRDSD----ILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAM 321
LD S I++ + AI + +DV+++SLG P+ + K + A+
Sbjct: 95 -----VLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPT--GSTALKTVVD----KAV 143
Query: 322 MHGILVVAAAGNEGPKPDTVV----NLAPWLLTVGASTMDREFTSYVTLGDE 369
GI+V AAAGNEG T P + VGA + S+ ++G E
Sbjct: 144 SSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSVGSE 195
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
D+ APGV I ++ P + + A GT M+TPH++G A L+ + HP W+
Sbjct: 197 DVMAPGVSI-----QSTLPGGT--------YGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 569 AAIK 572
A ++
Sbjct: 244 AQVR 247
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP D+ APGV I S P + A GT+
Sbjct: 174 SNQRAPFSSVGPEL--------DVMAPGVSIC---------STLPGGK----YGALSGTA 212
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 213 MASPHVAGAAALILSKHPNWTNTQVRSSL 241
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 203 AQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYK 262
A +SF P+ E + +D + HGTH A GT +P A L + K
Sbjct: 45 AGGASFVPS-ETNPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVK 85
Query: 263 SCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPS 302
V G + S I++ + AI + +DV+++SLG PS
Sbjct: 86 ----VLGADGSGQASWIINGIEWAIANNMDVINMSLGSPS 121
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 99/386 (25%), Positives = 147/386 (38%), Gaps = 78/386 (20%)
Query: 223 HGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSA 282
HGTH + GN + Y +G P A+L + VNG R+ A
Sbjct: 88 HGTHVSGILSGNAPSETK---EPY-RLEGAXPEAQLLLXR-VEIVNGLADYARN--YAQA 140
Query: 283 FDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNE---GPK-- 337
DAI+ G V++ S G + D +A G+ +V +AGN+ G K
Sbjct: 141 IRDAINLGAKVINXSFGNAALAYAN-LPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTR 199
Query: 338 ------PDTVVNLAPW----LLTVGASTMDREFTSYVTLGD-EQIFKE---IMQGPLTQH 383
PD V P LTV + + D++ T V + +Q KE + +
Sbjct: 200 LPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDKEXPVLSTNRFEPN 259
Query: 384 SMIGNLECNPGAI--DPKKINGKILLCMNHTHGIDKSXXXXXXXXXXXILVNPKQLENES 441
N G D K + GKI L +L+ +N+
Sbjct: 260 KAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAGAVGVLI----YDNQD 315
Query: 442 LPLPYHLPT-------------SLVEFDDAQSIIAYNNSIKN-PVASVSDVKTEFNTKPS 487
P LP L+ D+ Q I +N + K P AS
Sbjct: 316 KGFPIELPNVDQXPAAFISRKDGLLLKDNPQKTITFNATPKVLPTAS------------G 363
Query: 488 PQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSM 547
+++ FSS G T + NI KPDI APG +I++ +VA +K + GTS
Sbjct: 364 TKLSRFSSWG-LTADGNI-KPDIAAPGQDILS----SVANNK---------YAKLSGTSX 408
Query: 548 STPHISGIAGLLK----TLHPDWSPA 569
S P ++GI GLL+ T +PD +P+
Sbjct: 409 SAPLVAGIXGLLQKQYETQYPDXTPS 434
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 28/105 (26%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GTSM+TPH++G A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 569 AAIKSAIMXXXXXXXXXGKNPITDYDGLKATPFEYGAGHVNPNSA 613
I++ + KN T L +T YG+G VN +A
Sbjct: 238 VQIRNHL-----------KNTATS---LGSTNL-YGSGLVNAEAA 267
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GTSM+TPH++G A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 569 AAIK 572
I+
Sbjct: 238 VQIR 241
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P E ST +D +GHGTH A T ++ N G G +P A L + K
Sbjct: 47 ASFVPG-EPST-QDGNGHGTHVAGT--------IAALNNSIGV-LGVAPNAELYAVK--- 92
Query: 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325
V G S I + A ++G+ V ++SLG PS T + A+ A G+
Sbjct: 93 -VLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSAT--LEQAV----NSATSRGV 145
Query: 326 LVVAAAGNEG 335
LVVAA+GN G
Sbjct: 146 LVVAASGNSG 155
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GTSM+TPH++G A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 569 AAIK 572
I+
Sbjct: 238 VQIR 241
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P E ST +D +GHGTH A T ++ N G G +P A L + K
Sbjct: 47 ASFVPG-EPST-QDGNGHGTHVAGT--------IAALNNSIGV-LGVAPNAELYAVK--- 92
Query: 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325
V G +S I + A ++G+ V ++SLG PS T + A+ A G+
Sbjct: 93 -VLGASGGGSNSSIAQGLEWAGNNGMHVANLSLGSPSPSAT--LEQAV----NSATSRGV 145
Query: 326 LVVAAAGNEG 335
LVVAA+GN G
Sbjct: 146 LVVAASGNSG 155
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GTSM+TPH++G A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 569 AAIK 572
I+
Sbjct: 238 VQIR 241
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P E ST +D +GHGTH A T ++ N G G +P A L + K
Sbjct: 47 ASFVPG-EPST-QDGNGHGTHVAGT--------IAALNNSIGV-LGVAPSAELYAVK--- 92
Query: 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325
V G S I + A ++G+ V ++SLG PS T + A+ A G+
Sbjct: 93 -VLGADGRGAISSIAQGLEWAGNNGMHVANLSLGSPSPSAT--LEQAV----NSATSRGV 145
Query: 326 LVVAAAGNEG 335
LVVAA+GN G
Sbjct: 146 LVVAASGNSG 155
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GTSM+TPH++G A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 569 AAIK 572
I+
Sbjct: 238 VQIR 241
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P E ST +D +GHGTH A T ++ N G G +P A L + K
Sbjct: 47 ASFVPG-EPST-QDGNGHGTHVAGT--------IAALNNSIGV-LGVAPSAELYAVK--- 92
Query: 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325
V G S I + A ++G+ V ++SLG PS T + A+ A G+
Sbjct: 93 -VLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSAT--LEQAV----NSATSRGV 145
Query: 326 LVVAAAGNEG 335
LVVAA+GN G
Sbjct: 146 LVVAASGNSG 155
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I S P + + A GT
Sbjct: 171 SNQRASFSSVGP--------ELDVMAPGVSIW---------STLPGNK----YGAKSGTX 209
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
M++PH++G A L+ + HP+W+ ++S++
Sbjct: 210 MASPHVAGAAALILSKHPNWTNTQVRSSL 238
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
D+ APGV I ++ P + + A GTSM+TPH++G A L+ + HP W+
Sbjct: 197 DVMAPGVSI-----QSTLPGGT--------YGAYNGTSMATPHVAGAAALILSKHPTWTN 243
Query: 569 AAIK 572
A ++
Sbjct: 244 AQVR 247
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 32/172 (18%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P+ E + +D HGTH A T ++ N G G +P A L + K
Sbjct: 48 ASFVPS-ETNPYQDGSSHGTHVAGT--------IAALNNSIGV-LGVAPSASLYAVK--- 94
Query: 266 NVNGQPLDCRDSD----ILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAM 321
LD S I++ + AI + +DV+++SLG P+ + K + A+
Sbjct: 95 -----VLDSTGSGQYSWIINGIEWAISNNMDVINMSLGGPT--GSTALKTVVD----KAV 143
Query: 322 MHGILVVAAAGNEGPKPDTVV----NLAPWLLTVGASTMDREFTSYVTLGDE 369
GI+V AAAGNEG T P + VGA + S+ + G E
Sbjct: 144 SSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSANQRASFSSAGSE 195
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 51/219 (23%)
Query: 170 RGICQND---THYGFQCNRKLIGMRYYNQGQI------------------EHARAQNSSF 208
RGI + D + YG Y QGQI E R + ++
Sbjct: 5 RGIVKADVAQSSYGL-----------YGQGQIVAVADTGLDTGRNDSSMHEAFRGKITAL 53
Query: 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVN 268
Y + A D +GHGTH A SV GNG T KG +P+A L ++S + +
Sbjct: 54 YALGRTNNANDTNGHGTHVAG----------SVLGNG-STNKGMAPQANLV-FQSIMD-S 100
Query: 269 GQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVV 328
G L S++ + F A G + + S G + N Y D+ + + + + ++
Sbjct: 101 GGGLGGLPSNLQTLFSQAYSAGARIHTNSWG--AAVNGAYTTDSRNVDDY-VRKNDMTIL 157
Query: 329 AAAGNEGPKPDTVV--NLAPWLLTVGASTMDR-EFTSYV 364
AAGNEGP T+ A +TVGA+ R F SY
Sbjct: 158 FAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYA 196
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FSSRGP+ IKPD+ APG I++A S ++AP S + + GTS +TP +
Sbjct: 205 FSSRGPT--KDGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYXGGTSXATPIV 261
Query: 553 SGIAGLLK 560
+G L+
Sbjct: 262 AGNVAQLR 269
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 487 SPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTS 546
S Q FSS GP + D+ APGV I ++ P + A GTS
Sbjct: 183 SNQRASFSSVGP--------ELDVMAPGVSI-----QSTLPGNK--------YGAYNGTS 221
Query: 547 MSTPHISGIAGLLKTLHPDWSPAAIKSAI 575
++PH++G A L+ + HP+W+ ++S++
Sbjct: 222 XASPHVAGAAALILSKHPNWTNTQVRSSL 250
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 91/219 (41%), Gaps = 51/219 (23%)
Query: 170 RGICQND---THYGFQCNRKLIGMRYYNQGQI------------------EHARAQNSSF 208
RGI + D + YG Y QGQI E R + ++
Sbjct: 5 RGIVKADVAQSSYGL-----------YGQGQIVAVADTGLDTGRNDSSMHEAFRGKITAL 53
Query: 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVN 268
Y + A D +GHGTH A SV GNG T KG +P+A L ++S + +
Sbjct: 54 YALGRTNNANDTNGHGTHVAG----------SVLGNG-STNKGMAPQANLV-FQSIMD-S 100
Query: 269 GQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVV 328
G L S++ + F A G + + S G + N Y D+ + + + + ++
Sbjct: 101 GGGLGGLPSNLQTLFSQAYSAGARIHTNSWG--AAVNGAYTTDSRNVDDY-VRKNDMTIL 157
Query: 329 AAAGNEGPKPDTVV--NLAPWLLTVGASTMDR-EFTSYV 364
AAGNEGP T+ A +TVGA+ R F SY
Sbjct: 158 FAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYA 196
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 493 FSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHI 552
FSSRGP+ IKPD+ APG I++A S ++AP S + + GTSM+TP +
Sbjct: 205 FSSRGPT--KDGRIKPDVMAPGTFILSARS-SLAPDSSFWANHDSKYAYMGGTSMATPIV 261
Query: 553 SGIAGLLK 560
+G L+
Sbjct: 262 AGNVAQLR 269
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 19/104 (18%)
Query: 473 ASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPS 532
A V++ T T S FS+ G D+ APG I +A+ S
Sbjct: 168 ARVAEALTVGATTSSDARASFSNYGSCV--------DLFAPGASIPSAWYT--------S 211
Query: 533 DDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIM 576
D N GTSM+TPH++G+A L +P +PA++ SAI+
Sbjct: 212 DTATQTLN---GTSMATPHVAGVAALYLEQNPSATPASVASAIL 252
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P E ST +D +GHGTH A T ++ N G G +P A L + K
Sbjct: 47 ASFVPG-EPST-QDGNGHGTHVAGT--------IAALDNSIGV-LGVAPSAELYAVK--- 92
Query: 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325
V G S I + A ++G+ V ++SLG PS T + A+ A G+
Sbjct: 93 -VLGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPSPSAT--LEQAV----NSATSRGV 145
Query: 326 LVVAAAGNEG 335
LVVAA+GN G
Sbjct: 146 LVVAASGNSG 155
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GT M+TPH++G A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 569 AAIK 572
I+
Sbjct: 238 VQIR 241
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 28/105 (26%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GT M+TPH++G A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 569 AAIKSAIMXXXXXXXXXGKNPITDYDGLKATPFEYGAGHVNPNSA 613
I++ + KN T L +T YG+G VN +A
Sbjct: 238 VQIRNHL-----------KNTATS---LGSTNL-YGSGLVNAEAA 267
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APGV + + Y P + + + GT M+TPH++G A L+K +P WS
Sbjct: 191 DIVAPGVNVQSTY-----PGST--------YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 569 AAIK 572
I+
Sbjct: 238 VQIR 241
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 206 SSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265
+SF P E ST +D +GHGTH A T ++ N G G +P A L + K
Sbjct: 47 ASFVPG-EPST-QDGNGHGTHVAGT--------IAALNNSIGV-LGVAPNAELYAVK--- 92
Query: 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGI 325
V G S I + A ++G+ V ++SLG PS T + A+ A G+
Sbjct: 93 -VLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSAT--LEQAV----NSATSRGV 145
Query: 326 LVVAAAGNEG 335
LVVAA+GN G
Sbjct: 146 LVVAASGNSG 155
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT+M+TPH+SG+ L++ +
Sbjct: 298 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 341
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A +
Sbjct: 149 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ +D D + A D D +V+S+SLG P+ + Y D I A GI++VA
Sbjct: 208 DGVADKDGDGIIAGDPD-DDAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIVA 260
Query: 330 AAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A+GNEG + P ++ VGA + S+
Sbjct: 261 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 294
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT+M+TPH+SG+ L++ +
Sbjct: 298 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 341
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A +
Sbjct: 149 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 270 QPLDCRDSDILSAFD-DAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVV 328
+ +D D + A D DA D +V+S+SLG P+ + Y D I A GI++V
Sbjct: 208 DGVADKDGDGIIAGDPDA--DAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIV 259
Query: 329 AAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
AA+GNEG + P ++ VGA + S+
Sbjct: 260 AASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 294
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT+M+TPH+SG+ L++ +
Sbjct: 298 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 341
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 47/169 (27%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDS- 277
D +GHGTH + ++ N G G +P ++ S + LD R S
Sbjct: 149 DQNGHGTH--------VIGTIAALNNDIGVV-GVAPGVQIYSVRV--------LDARGSG 191
Query: 278 ---DILSAFDDAIH--DGV------------------DVLSVSLGEPSHKNTEYFKDAIA 314
DI + AI DGV +V+S+SLG P+ + Y D I
Sbjct: 192 SYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDAAAEVISMSLGGPA--DDSYLYDMI- 248
Query: 315 IGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A GI++VAA+GNEG + P ++ VGA + S+
Sbjct: 249 ---IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 294
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT+M+TPH+SG+ L++ +
Sbjct: 298 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 341
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A +
Sbjct: 149 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 207
Query: 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ +D D + A D D +V+S+SLG P+ + Y D I A GI++VA
Sbjct: 208 DGVADKDGDGIIAGDPD-DDAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIVA 260
Query: 330 AAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A+GNEG + P ++ VGA + S+
Sbjct: 261 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 294
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT+M+TPH+SG+ L++ +
Sbjct: 218 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 261
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A +
Sbjct: 69 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 127
Query: 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ +D D + A D D +V+S+SLG P+ + Y D I A GI++VA
Sbjct: 128 DGVADKDGDGIIAGDPD-DDAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIVA 180
Query: 330 AAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A+GNEG + P ++ VGA + S+
Sbjct: 181 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 214
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT+M+TPH+SG+ L++ +
Sbjct: 220 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 263
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A +
Sbjct: 71 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 129
Query: 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ +D D + A D D +V+S+SLG P+ + Y D I A GI++VA
Sbjct: 130 DGVADKDGDGIIAGDPD-DDAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIVA 182
Query: 330 AAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A+GNEG + P ++ VGA + S+
Sbjct: 183 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 216
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT+M+TPH+SG+ L++ +
Sbjct: 295 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 338
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A +
Sbjct: 146 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 204
Query: 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ +D D + A D D +V+S+SLG P+ + Y D I A GI++VA
Sbjct: 205 DGVADKDGDGIIAGDPD-DDAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIVA 257
Query: 330 AAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A+GNEG + P ++ VGA + S+
Sbjct: 258 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 291
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT+M+TPH+SG+ L++ +
Sbjct: 229 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 272
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A +
Sbjct: 80 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 138
Query: 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ +D D + A D D +V+S+SLG P+ + Y D I A GI++VA
Sbjct: 139 DGVADKDGDGIIAGDPD-DDAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIVA 191
Query: 330 AAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A+GNEG + P ++ VGA + S+
Sbjct: 192 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 225
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT+M+TPH+SG+ L++ +
Sbjct: 229 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 272
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A + +
Sbjct: 80 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIAQAILGP 138
Query: 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ +D D + A D D +V+S+SLG P+ + Y D I A GI++VA
Sbjct: 139 DGVADKDGDGIIAGDPD-DDAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIVA 191
Query: 330 AAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A+GNEG + P ++ VGA + S+
Sbjct: 192 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 225
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSD 278
D GHGTH A +A+ N V+G +P A L +YK + D
Sbjct: 67 DRQGHGTHVAGSALANGGTGSGVYGV--------APEADLWAYKVLGDDGSGYADDIAEA 118
Query: 279 ILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP 338
I A D A V+ +++ S + +A+ +A G+L++AAAGN GPKP
Sbjct: 119 IRHAGDQATALNTKVV-INMSLGSSGESSLITNAVD----YAYDKGVLIIAAAGNSGPKP 173
Query: 339 DTV 341
++
Sbjct: 174 GSI 176
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT M+TPH+SG+ L++ +
Sbjct: 218 QPEVSAPGVDILSTY---------PDDS----YETLMGTXMATPHVSGVVALIQAAY 261
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A +
Sbjct: 69 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 127
Query: 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ +D D + A D D +V+S+SLG P+ + Y D I A GI++VA
Sbjct: 128 DGVADKDGDGIIAGDPD-DDAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIVA 180
Query: 330 AAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A+GNEG + P ++ VGA + S+
Sbjct: 181 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 214
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH 563
+P+++APGV+I++ Y P D + GT M+TPH+SG+ L++ +
Sbjct: 218 QPEVSAPGVDILSTY---------PDDS----YETLMGTCMATPHVSGVVALIQAAY 261
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGT---------AKGGSPRARLASYKSCWNVNG 269
D +GHGTH T + ++ V G G A+G + +A +
Sbjct: 69 DQNGHGTHVIGT-IAALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGP 127
Query: 270 QPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVA 329
+ +D D + A D D +V+S+SLG P+ + Y D I A GI++VA
Sbjct: 128 DGVADKDGDGIIAGDPD-DDAAEVISMSLGGPA--DDSYLYDMI----IQAYNAGIVIVA 180
Query: 330 AAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSY 363
A+GNEG + P ++ VGA + S+
Sbjct: 181 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASF 214
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 55/121 (45%), Gaps = 26/121 (21%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSD 278
DL+ HGTH A A N G A G +P R+ + ++ LD S
Sbjct: 68 DLNNHGTHVAGIAAAET-------NNATGIA-GMAPNTRILAVRA--------LDRNGSG 111
Query: 279 ILSAFDDAI----HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNE 334
LS DAI G +V+++SLG H T ++A+ +A G +VVAAAGN
Sbjct: 112 TLSDIADAIIYAADSGAEVINLSLGCDCHTTT--LENAVN----YAWNKGSVVVAAAGNN 165
Query: 335 G 335
G
Sbjct: 166 G 166
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 13/53 (24%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKT 561
D+ APGV+I++ + R + + GTSM++PH++G+A LL +
Sbjct: 202 DVVAPGVDIVSTIT-----------GNRYAYMS--GTSMASPHVAGLAALLAS 241
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLL----KT 561
+ D+ APG +I++ ++ P D ++ GTSM+TPH+SG+A L+ +
Sbjct: 242 VDVDLAAPGQDILSTVDSG---TRRPVSD---AYSFMAGTSMATPHVSGVAALVISAANS 295
Query: 562 LHPDWSPAAIKSAIM 576
++ + +PA +K ++
Sbjct: 296 VNKNLTPAELKDVLV 310
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLL----KT 561
+ D+ APG +I++ ++ P D ++ GTSM+TPH+SG+A L+ +
Sbjct: 242 VDVDLAAPGQDILSTVDSG---TRRPVSD---AYSFMAGTSMATPHVSGVAALVISAANS 295
Query: 562 LHPDWSPAAIKSAIM 576
++ + +PA +K ++
Sbjct: 296 VNKNLTPAELKDVLV 310
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLL----KT 561
+ D+ APG +I++ ++ P D ++ GTSM+TPH+SG+A L+ +
Sbjct: 242 VDVDLAAPGQDILSTVDSG---TRRPVSD---AYSFMAGTSMATPHVSGVAALVISAANS 295
Query: 562 LHPDWSPAAIKSAIM 576
++ + +PA +K ++
Sbjct: 296 VNKNLTPAELKDVLV 310
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKT 561
D+ APG I + Y + S S GTSM+TPH++G+AGLL +
Sbjct: 201 DVAAPGSSIYSTYPTSTYASLS-------------GTSMATPHVAGVAGLLAS 240
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 11/63 (17%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI APG I +++ + + + + S GTSM++PH++G+A L +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSATNTIS-----------GTSMASPHVAGVAALYLDENPNLSP 246
Query: 569 AAI 571
A +
Sbjct: 247 AQV 249
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 13/53 (24%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKT 561
D+ APG I + Y + S S GTSM+TPH++G+AGLL +
Sbjct: 201 DVAAPGSWIYSTYPTSTYASLS-------------GTSMATPHVAGVAGLLAS 240
>pdb|3ST1|A Chain A, Crystal Structure Of Necrosis And Ethylene Inducing
Protein 2 From The Causal Agent Of Cocoa's Witches Broom
Disease
Length = 214
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 42 DDINRARNHHHNFLGS--FFGSVKKARDSISCS----YGRHINGFAAILEEEHAQ-QLAK 94
D+I+ H H++ G+ F S + D ++ S + ++ N A +++ H + Q +
Sbjct: 92 DEISTGIGHRHDWEGAVVFLNSDTQQIDGVAASAHGKWRKYPNPGGANIDDTHVKLQYSA 151
Query: 95 HPEVLSIFLD---EGRKVQTTRSWDFLGLEKDNVISQNSAWNKGRFG-EDVIIGVIDSGV 150
P + S LD +G + T SW+ +G + I++ S W D +IG SG
Sbjct: 152 EPVINSHALDLTDKGGDLPTLASWEGMGADARAAINERSHWGDANPPIADSLIGSSLSGA 211
Query: 151 W 151
W
Sbjct: 212 W 212
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIK 572
GTSM++PH++G A L+ + HP+ S + ++
Sbjct: 219 GTSMASPHVAGAAALILSKHPNLSASQVR 247
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIK 572
GTSM++PH++G A L+ + HP+ S + ++
Sbjct: 219 GTSMASPHVAGAAALILSKHPNLSASQVR 247
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIK 572
GTSM++PH++G A L+ + HP+ S + ++
Sbjct: 218 GTSMASPHVAGAAALILSKHPNLSASQVR 246
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIK 572
GTSM++PH++G A L+ + HP+ S + ++
Sbjct: 218 GTSMASPHVAGAAALILSKHPNLSASQVR 246
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIK 572
GTSM++PH++G A L+ + HP+ S + ++
Sbjct: 218 GTSMASPHVAGAAALILSKHPNLSASQVR 246
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIK 572
GTSM++PH++G A L+ + HP+ S + ++
Sbjct: 218 GTSMASPHVAGAAALILSKHPNLSASQVR 246
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 19/133 (14%)
Query: 223 HGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSA 282
HGTH AS +FG G +P+ R + + L D+ A
Sbjct: 64 HGTHVASI----------IFGQHDSPVTGIAPQCRGLIVPVFAD---ESLKLSQLDLSRA 110
Query: 283 FDDAIHDGVDVLSVSLGEPSHKNTE--YFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT 340
+ A+++G ++++VS G+ + + + AI + + +L++AA GN+G +
Sbjct: 111 IEQAVNNGANIINVSAGQLTDAGEADTWLEKAIQL----CQENNVLLIAATGNDGCECLH 166
Query: 341 VVNLAPWLLTVGA 353
V P +L VGA
Sbjct: 167 VPASLPTVLAVGA 179
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI PG +I++ + S S GTSM+TPH++G+A L TL +
Sbjct: 200 DIFGPGTDILSTWIGGSTRSIS-------------GTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 569 AAIK 572
+A +
Sbjct: 247 SACR 250
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 544 GTSMSTPHISGIAGLLKTLHPDWSPAAIK 572
GT M++PH++G A L+ + HP+ S + ++
Sbjct: 218 GTXMASPHVAGAAALILSKHPNLSASQVR 246
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI PG I++ + S S GTSM+TPH++G+A L TL +
Sbjct: 200 DIFGPGTSILSTWIGGSTRSIS-------------GTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 569 AAIK 572
+A +
Sbjct: 247 SACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 13/64 (20%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP 568
DI PG I++ + S S GTSM+TPH++G+A L TL +
Sbjct: 200 DIFGPGTSILSTWIGGSTRSIS-------------GTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 569 AAIK 572
+A +
Sbjct: 247 SACR 250
>pdb|1YZ6|A Chain A, Crystal Structure Of Intact Alpha Subunit Of Aif2 From
Pyrococcus Abyssi
Length = 274
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 261 YKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLS 295
+++ W PL+ ++ +AF+DA DG+DVL
Sbjct: 117 FETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVLK 151
>pdb|1ZVJ|A Chain A, Structure Of Kumamolisin-As Mutant, D164n
Length = 364
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 276 DSDILSAFDDAIHDGV---DVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAG 332
D+ L A AIHD V+S+S G P T A+ A G+ V+AAAG
Sbjct: 104 DAGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAIAAMNRAFLDAAALGVTVLAAAG 163
Query: 333 NEG 335
N G
Sbjct: 164 NSG 166
>pdb|1ZVK|A Chain A, Structure Of Double Mutant, D164n, E78h Of Kumamolisin-as
pdb|1ZVK|B Chain B, Structure Of Double Mutant, D164n, E78h Of Kumamolisin-as
Length = 358
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 276 DSDILSAFDDAIHDGV---DVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAG 332
D+ L A AIHD V+S+S G P T A+ A G+ V+AAAG
Sbjct: 104 DAGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAIAAMNRAFLDAAALGVTVLAAAG 163
Query: 333 NEG 335
N G
Sbjct: 164 NSG 166
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 99/267 (37%), Gaps = 80/267 (29%)
Query: 118 LGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDT 177
+G+E ++ + W G IIGVID+G + ++ +G V L T
Sbjct: 23 MGVE---IVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLT--------T 71
Query: 178 HYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVA 237
YG + + D +GHGTH A T
Sbjct: 72 DYG-------------------------------GDETNFSDNNGHGTHVAGT------- 93
Query: 238 NVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVD----- 292
V+ G G G +P+A L K+ L S + AI VD
Sbjct: 94 -VAAAETGSGVV-GVAPKADLFIIKA--------LSGDGSGEMGWIAKAIRYAVDWRGPK 143
Query: 293 -----VLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGP-KPDTVVNLAP 346
++++SLG P+ ++E DA+ +A+ + + VV AAGNEG + DT P
Sbjct: 144 GEQMRIITMSLGGPT--DSEELHDAVK----YAVSNNVSVVCAAGNEGDGREDTNEFAYP 197
Query: 347 W----LLTVGASTMDREFTSYVTLGDE 369
++ VGA D + + +E
Sbjct: 198 AAYNEVIAVGAVDFDLRLSDFTNTNEE 224
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 99/267 (37%), Gaps = 80/267 (29%)
Query: 118 LGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDT 177
+G+E ++ + W G IIGVID+G + ++ +G V L T
Sbjct: 23 MGVE---IVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLT--------T 71
Query: 178 HYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVA 237
YG + + D +GHGTH A T
Sbjct: 72 DYG-------------------------------GDETNFSDNNGHGTHVAGT------- 93
Query: 238 NVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVD----- 292
V+ G G G +P+A L K+ L S + AI VD
Sbjct: 94 -VAAAETGSGVV-GVAPKADLFIIKA--------LSGDGSGEMGWIAKAIRYAVDWRGPK 143
Query: 293 -----VLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGP-KPDTVVNLAP 346
++++SLG P+ ++E DA+ +A+ + + VV AAGNEG + DT P
Sbjct: 144 GEQMRIITMSLGGPT--DSEELHDAVK----YAVSNNVSVVXAAGNEGDGREDTNEFAYP 197
Query: 347 W----LLTVGASTMDREFTSYVTLGDE 369
++ VGA D + + +E
Sbjct: 198 AAYNEVIAVGAVDFDLRLSDFTNTNEE 224
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 22/158 (13%)
Query: 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSD 278
D +GHGTH A T V+ G G G +P+A L K+ +
Sbjct: 82 DNNGHGTHVAGT--------VAAAETGSGVV-GVAPKADLFIIKALSGDGSGEMGWIAKA 132
Query: 279 ILSAFDDAIHDG--VDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGP 336
I A D G + ++++SLG P+ ++E DA+ +A+ + + VV AAGNEG
Sbjct: 133 IRYAVDWRGPKGEQMRIITMSLGGPT--DSEELHDAVK----YAVSNNVSVVXAAGNEGD 186
Query: 337 -KPDTVVNLAPW----LLTVGASTMDREFTSYVTLGDE 369
+ DT P ++ VGA D + + +E
Sbjct: 187 GREDTNEFAYPAAYNEVIAVGAVDFDLRLSDFTNTNEE 224
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 58/146 (39%), Gaps = 34/146 (23%)
Query: 223 HGTHAASTAVGN--------FVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDC 274
HGTH +S A GN N + G + GS A ++ V C
Sbjct: 272 HGTHVSSIASGNHSSRDVDGVAPNAKIVSXTIGDGRLGSXETGTALVRAXTKVXEL---C 328
Query: 275 RDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMM---HGILVVAAA 331
RD +DV++ S GE H N + ++ IG + +G++ VA+A
Sbjct: 329 RDGR-----------RIDVINXSYGE--HAN---WSNSGRIGELXNEVVNKYGVVWVASA 372
Query: 332 GNEGPKPDTVVN----LAPWLLTVGA 353
GN GP TV P L+ VGA
Sbjct: 373 GNHGPALCTVGTPPDISQPSLIGVGA 398
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 63/267 (23%), Positives = 99/267 (37%), Gaps = 80/267 (29%)
Query: 118 LGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDT 177
+G+E ++ + W G IIGVID+G + ++ +G V L T
Sbjct: 5 MGVE---IVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAERIIGGVNLT--------T 53
Query: 178 HYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVA 237
YG + + D +GHGTH A T
Sbjct: 54 DYG-------------------------------GDETNFSDNNGHGTHVAGT------- 75
Query: 238 NVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVD----- 292
V+ G G G +P+A L K+ L S + AI VD
Sbjct: 76 -VAAAETGSGVV-GVAPKADLFIIKA--------LSGDGSGEMGWIAKAIRYAVDWRGPK 125
Query: 293 -----VLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGP-KPDTVVNLAP 346
++++SLG P+ ++E DA+ +A+ + + VV AAGNEG + DT P
Sbjct: 126 GEQMRIITMSLGGPT--DSEELHDAVK----YAVSNNVSVVCAAGNEGDGREDTNEFAYP 179
Query: 347 W----LLTVGASTMDREFTSYVTLGDE 369
++ VGA D + + +E
Sbjct: 180 AAYNEVIAVGAVDFDLRLSDFTNTNEE 206
>pdb|3EIW|A Chain A, Crystal Structure Of Staphylococcus Aureus Lipoprotein,
Htsa
pdb|3LHS|A Chain A, Open Conformation Of Htsa Complexed With Staphyloferrin A
pdb|3LI2|A Chain A, Closed Conformation Of Htsa Complexed With Staphyloferrin
A
pdb|3LI2|B Chain B, Closed Conformation Of Htsa Complexed With Staphyloferrin
A
Length = 296
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 51 HHNFLGSFFGSV--KKA-RDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLSIFLDEGR 107
+++++G F + K A D ++ +++ G L+ EH L +PE + I D +
Sbjct: 180 NYSYVGQFLNELGFKNALSDDVTKGLSKYLKGPYLQLDTEHLADL--NPERMIIMTDHAK 237
Query: 108 KVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSF-SDEGMG 163
K S +F L++D + W K ++ + ++D VW S+ S E M
Sbjct: 238 K----DSAEFKKLQED------ATWKKLNAVKNNRVDIVDRDVWARSRGLISSEEMA 284
>pdb|1SIO|A Chain A, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SIO|B Chain B, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SIO|C Chain C, Structure Of Kumamolisin-As Complexed With A
Covalently-Bound Inhibitor, Acipf
pdb|1SN7|A Chain A, Kumamolisin-As, Apoenzyme
Length = 364
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 276 DSDILSAFDDAIHDGV---DVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAG 332
D+ L A AIHD V+S+S G P T A+ A G+ V+AAAG
Sbjct: 104 DAGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAIAAMNRAFLDAAALGVTVLAAAG 163
Query: 333 NEG 335
+ G
Sbjct: 164 DSG 166
>pdb|1SIU|A Chain A, Kumamolisin-As E78h Mutant
Length = 364
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 276 DSDILSAFDDAIHDGV---DVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAG 332
D+ L A AIHD V+S+S G P T A+ A G+ V+AAAG
Sbjct: 104 DAGFLDAITTAIHDPTLKPSVVSISWGGPEDSWTSAAIAAMNRAFLDAAALGVTVLAAAG 163
Query: 333 NEG 335
+ G
Sbjct: 164 DSG 166
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 207 SFYPTPEHSTARD---LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKS 263
+ PT + AR + HGTH AS +FG + G +P+ R
Sbjct: 51 TVLPTLAPTAARSDGFMSAHGTHVASI----------IFGQPETSVPGIAPQCR-GLIVP 99
Query: 264 CWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSH--KNTEYFKDAIAIGSFHAM 321
++ + + + D+ + A++ G ++++S GE + + + ++A+++
Sbjct: 100 IFSDDRRRIT--QLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSL----CR 153
Query: 322 MHGILVVAAAGNEGPKPDTVVNLAPWLLTVGA 353
+ +L+VAAAGN G V P +L VGA
Sbjct: 154 QNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 185
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 207 SFYPTPEHSTARD---LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKS 263
+ PT + AR + HGTH AS +FG + G +P+ R
Sbjct: 42 TVLPTLAPTAARSDGFMSAHGTHVASI----------IFGQPETSVPGIAPQCR-GLIVP 90
Query: 264 CWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSH--KNTEYFKDAIAIGSFHAM 321
++ + + + D+ + A++ G ++++S GE + + + ++A+++
Sbjct: 91 IFSDDRRRI--TQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSL----CR 144
Query: 322 MHGILVVAAAGNEGPKPDTVVNLAPWLLTVGA 353
+ +L+VAAAGN G V P +L VGA
Sbjct: 145 QNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 176
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 13/50 (26%)
Query: 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGL 558
D+ APG +I +A+ + + GTSM+TPH++G+A L
Sbjct: 196 DLFAPGSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAAL 232
>pdb|1YZ7|A Chain A, Crystal Structure Of A C-Terminal Segment Of The Alpha
Subunit Of Aif2 From Pyrococcus Abyssi
Length = 188
Score = 29.6 bits (65), Expect = 5.9, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 261 YKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVL 294
+++ W PL+ ++ +AF+DA DG+DVL
Sbjct: 31 FETAWREVWVPLEEEWGEVYAAFEDAAKDGIDVL 64
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 38 NPTADDINRA------RNHHHNFLGSFFGSVKKARDSISCSYGRHINGFAAILEEEHAQQ 91
NP AD A R H +N + F + K A CS G+ A++L A Q
Sbjct: 343 NPIADLETTALGFRLLRLHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQ 402
Query: 92 LAKHPEVLSIFLDEGRKVQTTRSWDFLGLEKDNVISQNSAWN 133
LA E + LDE + T + LEK +SAWN
Sbjct: 403 LAFPGENI---LDEAKSFATKYLRE--ALEKSET---SSAWN 436
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 207 SFYPTPEHSTARD---LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKS 263
+ PT + AR + HGTH AS +FG + G +P+ R
Sbjct: 32 TVLPTLAPTAARSDGFMSAHGTHVASI----------IFGQPETSVPGIAPQCR-GLIVP 80
Query: 264 CWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSH--KNTEYFKDAIAIGSFHAM 321
++ + + + D+ + A++ G ++++S GE + + + ++A+++
Sbjct: 81 IFSDDRRRI--TQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENAVSL----CR 134
Query: 322 MHGILVVAAAGNEGPKPDTVVNLAPWLLTVGA 353
+ +L+VAAAGN G V P +L VGA
Sbjct: 135 QNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 166
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 473 ASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVA-PSKSP 531
+S ++V + T P + FS+ G + + APG I++ A P +S
Sbjct: 218 SSCNNVLSVGATTPKGKRAPFSNYGA--------RVHLAAPGTNILSTIDVGQAGPVRSS 269
Query: 532 SDDRRIPFNACFGTSMSTPHISGIAGLL--------KTLHP 564
+ GTSM+ PH+SG+A L+ KTL P
Sbjct: 270 -------YGMKAGTSMAAPHVSGVAALVISAANSIGKTLTP 303
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 473 ASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVA-PSKSP 531
+S ++V + T P + FS+ G + + APG I++ A P +S
Sbjct: 218 SSCNNVLSVGATTPKGKRAPFSNYGA--------RVHLAAPGTNILSTIDVGQAGPVRSS 269
Query: 532 SDDRRIPFNACFGTSMSTPHISGIAGLL--------KTLHP 564
+ GTSM+ PH+SG+A L+ KTL P
Sbjct: 270 -------YGMKAGTSMAAPHVSGVAALVISAANSIGKTLTP 303
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,471,342
Number of Sequences: 62578
Number of extensions: 993972
Number of successful extensions: 2271
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1910
Number of HSP's gapped (non-prelim): 269
length of query: 755
length of database: 14,973,337
effective HSP length: 106
effective length of query: 649
effective length of database: 8,340,069
effective search space: 5412704781
effective search space used: 5412704781
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)