Query 044682
Match_columns 755
No_of_seqs 460 out of 3136
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.9E-52 4.2E-57 449.2 28.7 306 107-580 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 8.4E-50 1.8E-54 445.4 23.0 291 130-621 305-619 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 1.2E-48 2.5E-53 407.5 24.0 244 132-583 1-254 (255)
4 cd05562 Peptidases_S53_like Pe 100.0 1.3E-48 2.8E-53 410.3 23.2 271 135-615 1-274 (275)
5 cd07497 Peptidases_S8_14 Pepti 100.0 3.9E-48 8.4E-53 412.6 25.7 290 138-579 1-311 (311)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 9.8E-48 2.1E-52 420.2 27.3 314 130-615 1-346 (346)
7 cd07489 Peptidases_S8_5 Peptid 100.0 4.4E-47 9.5E-52 408.8 26.4 294 130-618 4-301 (312)
8 cd07478 Peptidases_S8_CspA-lik 100.0 4.5E-47 9.7E-52 424.3 23.3 411 136-606 1-455 (455)
9 cd07476 Peptidases_S8_thiazoli 100.0 2E-46 4.4E-51 392.5 25.1 251 131-586 2-256 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 2.6E-45 5.7E-50 392.3 27.6 292 138-613 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 2.6E-45 5.7E-50 378.9 24.0 238 141-606 1-239 (239)
12 cd07483 Peptidases_S8_Subtilis 100.0 1.1E-44 2.4E-49 385.3 24.2 202 215-580 79-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 2.1E-44 4.6E-49 378.1 23.5 248 140-580 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 3.7E-44 8E-49 376.8 24.3 247 138-580 1-264 (264)
15 cd04857 Peptidases_S8_Tripepti 100.0 1.1E-43 2.4E-48 385.2 27.0 223 218-582 182-412 (412)
16 cd07485 Peptidases_S8_Fervidol 100.0 6E-44 1.3E-48 377.1 24.3 264 130-578 1-273 (273)
17 cd07487 Peptidases_S8_1 Peptid 100.0 2.9E-43 6.3E-48 370.3 25.5 258 138-580 1-264 (264)
18 KOG1153 Subtilisin-related pro 100.0 7.9E-44 1.7E-48 370.6 18.2 331 22-580 79-461 (501)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.7E-42 3.6E-47 362.6 24.6 233 131-581 17-255 (255)
20 cd04847 Peptidases_S8_Subtilis 100.0 8.7E-43 1.9E-47 371.7 21.1 269 142-580 2-291 (291)
21 cd07484 Peptidases_S8_Thermita 100.0 4.7E-42 1E-46 360.3 24.8 240 130-582 20-259 (260)
22 cd07490 Peptidases_S8_6 Peptid 100.0 7E-42 1.5E-46 357.8 24.2 253 140-580 1-254 (254)
23 cd07494 Peptidases_S8_10 Pepti 100.0 1.4E-41 3E-46 361.4 24.2 251 130-584 12-287 (298)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 1.7E-41 3.7E-46 362.5 24.4 279 134-580 2-293 (293)
25 cd07498 Peptidases_S8_15 Pepti 100.0 1.7E-41 3.7E-46 352.2 23.1 241 141-578 1-242 (242)
26 cd07496 Peptidases_S8_13 Pepti 100.0 3.5E-41 7.5E-46 358.3 24.7 207 216-578 66-285 (285)
27 cd07480 Peptidases_S8_12 Pepti 100.0 3.2E-41 6.8E-46 360.5 24.3 268 133-611 2-296 (297)
28 cd04843 Peptidases_S8_11 Pepti 100.0 8E-41 1.7E-45 351.6 23.1 246 130-580 6-277 (277)
29 cd07477 Peptidases_S8_Subtilis 100.0 2.7E-40 5.9E-45 340.3 23.8 227 140-578 1-229 (229)
30 cd07473 Peptidases_S8_Subtilis 100.0 5.1E-40 1.1E-44 344.7 25.2 250 139-580 2-259 (259)
31 PF00082 Peptidase_S8: Subtila 100.0 4.9E-41 1.1E-45 356.8 14.8 277 142-615 1-282 (282)
32 cd07491 Peptidases_S8_7 Peptid 100.0 3.4E-40 7.4E-45 341.3 19.6 223 138-562 2-229 (247)
33 cd07482 Peptidases_S8_Lantibio 100.0 1.9E-39 4E-44 346.9 22.9 211 215-578 47-294 (294)
34 cd07492 Peptidases_S8_8 Peptid 100.0 2.6E-39 5.7E-44 331.3 22.6 222 140-580 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 7.9E-40 1.7E-44 350.3 17.9 250 129-580 29-297 (297)
36 KOG4266 Subtilisin kexin isozy 100.0 8.1E-39 1.8E-43 340.8 18.0 364 23-620 49-470 (1033)
37 cd04848 Peptidases_S8_Autotran 100.0 2.7E-38 5.9E-43 332.7 21.8 247 137-580 1-267 (267)
38 cd07488 Peptidases_S8_2 Peptid 100.0 7.9E-33 1.7E-37 285.4 15.0 196 216-578 32-246 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 2.5E-32 5.5E-37 303.4 17.3 241 221-615 310-557 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 6E-31 1.3E-35 271.2 23.9 197 216-578 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 8.3E-24 1.8E-28 241.8 22.2 249 130-581 131-398 (508)
42 KOG3526 Subtilisin-like propro 99.8 2.8E-21 6E-26 197.0 10.1 305 129-635 151-474 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 2.4E-17 5.3E-22 180.5 15.1 104 247-358 81-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.2 5.3E-11 1.2E-15 113.0 11.2 105 391-500 36-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.1 6E-10 1.3E-14 103.4 12.4 111 364-474 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 5E-09 1.1E-13 89.3 7.1 78 25-110 1-82 (82)
47 cd04816 PA_SaNapH_like PA_SaNa 98.9 1.5E-08 3.2E-13 93.4 10.7 96 379-474 20-121 (122)
48 cd02122 PA_GRAIL_like PA _GRAI 98.7 9E-08 2E-12 89.7 10.0 88 388-475 44-138 (138)
49 PF02225 PA: PA domain; Inter 98.7 3.1E-08 6.8E-13 87.9 5.6 87 379-465 9-101 (101)
50 cd02127 PA_hPAP21_like PA_hPAP 98.6 1.9E-07 4.2E-12 85.0 10.2 87 388-475 21-116 (118)
51 cd04818 PA_subtilisin_1 PA_sub 98.6 1.6E-07 3.4E-12 86.1 9.6 86 388-474 27-117 (118)
52 cd02129 PA_hSPPL_like PA_hSPPL 98.6 2.3E-07 5E-12 84.1 10.1 80 388-467 30-114 (120)
53 KOG3525 Subtilisin-like propro 98.6 2.6E-07 5.6E-12 102.5 11.7 291 130-616 24-325 (431)
54 cd02125 PA_VSR PA_VSR: Proteas 98.6 3.8E-07 8.3E-12 84.3 9.8 95 379-474 14-126 (127)
55 cd00538 PA PA: Protease-associ 98.5 3E-07 6.5E-12 85.1 9.1 85 389-473 31-124 (126)
56 cd02126 PA_EDEM3_like PA_EDEM3 98.5 4.8E-07 1E-11 83.7 9.7 85 388-473 27-124 (126)
57 cd02130 PA_ScAPY_like PA_ScAPY 98.5 5E-07 1.1E-11 83.3 9.8 92 379-474 25-121 (122)
58 cd02124 PA_PoS1_like PA_PoS1_l 98.5 1.1E-06 2.5E-11 81.4 10.6 86 388-474 41-128 (129)
59 cd02132 PA_GO-like PA_GO-like: 98.5 8.5E-07 1.8E-11 83.6 9.6 83 388-473 48-137 (139)
60 cd04813 PA_1 PA_1: Protease-as 98.3 2.9E-06 6.4E-11 77.2 9.0 78 388-467 27-111 (117)
61 COG4934 Predicted protease [Po 98.3 4.7E-06 1E-10 99.6 11.7 101 245-353 284-395 (1174)
62 cd02123 PA_C_RZF_like PA_C-RZF 98.2 4.6E-06 9.9E-11 79.9 9.4 83 388-470 50-142 (153)
63 cd04817 PA_VapT_like PA_VapT_l 98.2 7.9E-06 1.7E-10 76.3 9.0 74 395-468 49-134 (139)
64 cd04819 PA_2 PA_2: Protease-as 97.9 0.0001 2.2E-09 68.4 10.2 76 395-470 37-122 (127)
65 PF06280 DUF1034: Fn3-like dom 97.8 0.00014 3.1E-09 65.9 9.4 84 666-752 1-103 (112)
66 cd04815 PA_M28_2 PA_M28_2: Pro 96.9 0.004 8.7E-08 58.3 8.4 77 397-473 34-132 (134)
67 cd02128 PA_TfR PA_TfR: Proteas 96.6 0.0051 1.1E-07 60.1 6.8 70 398-467 51-155 (183)
68 KOG2442 Uncharacterized conser 96.4 0.013 2.8E-07 64.0 8.7 79 398-476 91-176 (541)
69 cd04814 PA_M28_1 PA_M28_1: Pro 96.1 0.012 2.5E-07 55.4 6.2 58 379-436 23-100 (142)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 95.9 0.019 4E-07 53.7 6.2 58 379-436 25-96 (137)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 95.8 0.049 1.1E-06 51.8 9.0 85 379-463 23-130 (151)
72 cd02131 PA_hNAALADL2_like PA_h 94.7 0.044 9.4E-07 51.6 4.6 38 399-436 37-75 (153)
73 cd02121 PA_GCPII_like PA_GCPII 94.4 0.052 1.1E-06 54.9 4.8 53 379-436 48-106 (220)
74 PF10633 NPCBM_assoc: NPCBM-as 94.4 0.2 4.4E-06 41.9 7.6 55 673-727 5-60 (78)
75 KOG3920 Uncharacterized conser 93.1 0.11 2.4E-06 48.4 3.9 88 388-476 74-172 (193)
76 PF14874 PapD-like: Flagellar- 91.0 3.9 8.4E-05 35.9 11.4 54 673-727 20-73 (102)
77 KOG4628 Predicted E3 ubiquitin 90.3 0.66 1.4E-05 49.9 6.7 80 389-468 63-150 (348)
78 PF11614 FixG_C: IG-like fold 90.3 2 4.4E-05 39.0 9.2 54 674-728 32-85 (118)
79 PF06030 DUF916: Bacterial pro 87.7 5.9 0.00013 36.3 10.1 70 672-748 26-119 (121)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 86.2 1.9 4.1E-05 41.4 6.4 41 395-435 42-102 (157)
81 KOG1114 Tripeptidyl peptidase 79.4 1.3 2.8E-05 52.6 2.7 24 135-158 77-100 (1304)
82 PF00345 PapD_N: Pili and flag 76.1 19 0.00041 32.7 9.0 53 673-727 14-73 (122)
83 PF07718 Coatamer_beta_C: Coat 75.5 7.9 0.00017 36.2 6.1 68 675-749 71-139 (140)
84 PF00635 Motile_Sperm: MSP (Ma 74.6 16 0.00034 32.2 7.9 53 673-728 18-70 (109)
85 TIGR02745 ccoG_rdxA_fixG cytoc 68.4 19 0.00041 40.6 8.4 54 674-728 347-400 (434)
86 COG1470 Predicted membrane pro 65.6 19 0.00042 40.1 7.4 65 673-741 397-462 (513)
87 PF00927 Transglut_C: Transglu 63.7 55 0.0012 28.9 9.0 55 672-728 14-77 (107)
88 COG1470 Predicted membrane pro 63.0 32 0.0007 38.4 8.5 55 673-728 284-344 (513)
89 PF07610 DUF1573: Protein of u 53.7 43 0.00093 24.7 5.4 44 679-725 2-45 (45)
90 PF07705 CARDB: CARDB; InterP 51.3 92 0.002 26.5 8.2 51 673-727 19-71 (101)
91 smart00635 BID_2 Bacterial Ig- 45.1 58 0.0013 27.2 5.6 39 702-750 4-42 (81)
92 PRK15098 beta-D-glucoside gluc 43.1 64 0.0014 39.4 7.7 54 673-729 667-729 (765)
93 PF12690 BsuPI: Intracellular 41.6 2E+02 0.0043 24.3 8.2 51 676-727 3-70 (82)
94 PF05506 DUF756: Domain of unk 40.9 1.4E+02 0.003 25.4 7.5 50 673-727 18-67 (89)
95 PLN03080 Probable beta-xylosid 39.7 96 0.0021 38.0 8.4 52 674-727 685-744 (779)
96 PF00699 Urease_beta: Urease b 38.8 1.5E+02 0.0032 26.1 7.0 51 673-724 17-81 (100)
97 cd00407 Urease_beta Urease bet 33.5 82 0.0018 27.7 4.6 50 673-724 18-82 (101)
98 PRK13203 ureB urease subunit b 32.5 76 0.0017 27.9 4.3 50 673-724 18-82 (102)
99 PF02845 CUE: CUE domain; Int 31.2 49 0.0011 23.9 2.6 24 556-579 5-28 (42)
100 TIGR00192 urease_beta urease, 30.4 94 0.002 27.3 4.5 51 673-724 18-82 (101)
101 PRK15019 CsdA-binding activato 29.9 48 0.001 31.4 3.0 32 541-573 78-109 (147)
102 TIGR03391 FeS_syn_CsdE cystein 28.5 54 0.0012 30.8 3.0 34 540-574 72-105 (138)
103 PF08260 Kinin: Insect kinin p 27.8 28 0.00061 16.0 0.5 6 492-497 3-8 (8)
104 PF07172 GRP: Glycine rich pro 27.7 32 0.00069 30.1 1.2 13 1-13 1-13 (95)
105 PF05753 TRAP_beta: Translocon 27.2 3.7E+02 0.0079 26.5 8.7 53 673-727 38-97 (181)
106 PRK13202 ureB urease subunit b 27.0 99 0.0021 27.3 4.0 49 675-724 21-83 (104)
107 PRK13205 ureB urease subunit b 26.4 1.1E+02 0.0024 28.9 4.4 50 673-724 18-82 (162)
108 PF08821 CGGC: CGGC domain; I 26.1 2.5E+02 0.0054 25.1 6.7 65 254-329 36-104 (107)
109 COG2166 sufE Cysteine desulfur 25.8 59 0.0013 30.6 2.7 24 549-572 80-103 (144)
110 TIGR01451 B_ant_repeat conserv 25.7 2.6E+02 0.0056 21.3 5.9 39 672-712 11-50 (53)
111 PRK09296 cysteine desufuration 25.5 65 0.0014 30.2 2.9 32 541-573 68-99 (138)
112 PRK13201 ureB urease subunit b 25.1 1.2E+02 0.0026 27.9 4.4 50 673-724 18-82 (136)
113 PF13940 Ldr_toxin: Toxin Ldr, 24.7 58 0.0013 22.4 1.7 13 547-559 14-26 (35)
114 PF02657 SufE: Fe-S metabolism 24.0 76 0.0016 29.2 3.1 33 541-574 59-91 (125)
115 cd08523 Reeler_cohesin_like Do 23.9 5.8E+02 0.012 23.5 9.2 19 709-727 74-92 (124)
116 PF01345 DUF11: Domain of unkn 23.1 1.9E+02 0.0041 23.5 5.1 32 672-703 40-72 (76)
117 PF04255 DUF433: Protein of un 22.5 71 0.0015 24.8 2.2 39 538-576 10-54 (56)
118 PRK13204 ureB urease subunit b 22.2 1.4E+02 0.0031 28.2 4.4 50 673-724 41-105 (159)
119 PF09244 DUF1964: Domain of un 20.9 95 0.0021 24.5 2.5 44 709-755 15-58 (68)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-52 Score=449.20 Aligned_cols=306 Identities=53% Similarity=0.850 Sum_probs=258.8
Q ss_pred cccccCCCccccCCcccccccccccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCC-CCcccccc
Q 044682 107 RKVQTTRSWDFLGLEKDNVISQNSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDT-HYGFQCNR 185 (755)
Q Consensus 107 ~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~-~~~~~~n~ 185 (755)
+++++++++++++++.... ..+|..+++|+||+|||||||||++||+|.+.+..+.+..|.+.|..+. ++...|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWG---GSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCCC---cccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 4788999999999985431 1256779999999999999999999999999989999999999999988 66678999
Q ss_pred cccceeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeee
Q 044682 186 KLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCW 265 (755)
Q Consensus 186 kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~ 265 (755)
|+++.++|.+++.... + .....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++
T Consensus 78 ki~g~~~~~~~~~~~~---~--~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~ 152 (307)
T cd04852 78 KLIGARYFSDGYDAYG---G--FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW 152 (307)
T ss_pred eEEEEEEcccchhhcc---C--cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec
Confidence 9999999987754432 1 1123345678899999999999999998777666677777889999999999999998
Q ss_pred cCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCC
Q 044682 266 NVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLA 345 (755)
Q Consensus 266 ~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~ 345 (755)
..+ .+..+++++||++|++++++|||||||... .....+.+..++..+.++|++||+||||+|+...+.++..
T Consensus 153 ~~~----~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~---~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~ 225 (307)
T cd04852 153 PDG----GCFGSDILAAIDQAIADGVDVISYSIGGGS---PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVA 225 (307)
T ss_pred CCC----CccHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCC
Confidence 744 488999999999999999999999999874 2445667777888899999999999999998888888889
Q ss_pred CceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcC
Q 044682 346 PWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAG 425 (755)
Q Consensus 346 p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~G 425 (755)
||+++||+++
T Consensus 226 ~~vi~Vga~~---------------------------------------------------------------------- 235 (307)
T cd04852 226 PWVTTVAAST---------------------------------------------------------------------- 235 (307)
T ss_pred CCeEEEEecc----------------------------------------------------------------------
Confidence 9999999741
Q ss_pred ccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCC
Q 044682 426 AAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNI 505 (755)
Q Consensus 426 a~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 505 (755)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 506 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
+||||+|||.+|++++.... ..........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 ~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 57799999999999987531 1112233458999999999999999999999999999999999999999984
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=8.4e-50 Score=445.38 Aligned_cols=291 Identities=19% Similarity=0.166 Sum_probs=211.0
Q ss_pred cccc--CCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccc---cceeeccchhhhhhhcc
Q 044682 130 SAWN--KGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKL---IGMRYYNQGQIEHARAQ 204 (755)
Q Consensus 130 ~~~~--~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~ki---ig~~~~~~~~~~~~~~~ 204 (755)
.+|+ .+.+|+||+|||||||||++||+|.+.-... +....|..... .+++.. +.+++|.+
T Consensus 305 ~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~GrdgiD-----dD~nG~vdd~~G~nfVd--------- 369 (639)
T PTZ00262 305 ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRKGID-----DDNNGNVDDEYGANFVN--------- 369 (639)
T ss_pred HHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCccccc-----cccCCcccccccccccC---------
Confidence 4555 4678999999999999999999998531000 00000000000 001111 11122221
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhh
Q 044682 205 NSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFD 284 (755)
Q Consensus 205 g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~ 284 (755)
....|.|..||||||||||||...++. .+.||||+|+|+.+|+++..+ .+..+++++||+
T Consensus 370 --------~~~~P~D~~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G----~G~~sdI~~AI~ 429 (639)
T PTZ00262 370 --------NDGGPMDDNYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHK----LGRLGDMFKCFD 429 (639)
T ss_pred --------CCCCCCCCCCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCC----CccHHHHHHHHH
Confidence 233568899999999999999864332 248999999999999998776 478899999999
Q ss_pred hhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc--------------ccc----CCC
Q 044682 285 DAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT--------------VVN----LAP 346 (755)
Q Consensus 285 ~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~--------------~~~----~~p 346 (755)
||++.|++|||||||... ....+..++.+|.++|++||+||||+|+.... +++ ..|
T Consensus 430 yA~~~GA~VINmSlG~~~------~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~ 503 (639)
T PTZ00262 430 YCISREAHMINGSFSFDE------YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLR 503 (639)
T ss_pred HHHHCCCCEEEeccccCC------ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCC
Confidence 999999999999999763 23356667778999999999999999864211 111 247
Q ss_pred ceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCc
Q 044682 347 WLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGA 426 (755)
Q Consensus 347 ~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga 426 (755)
++|+|||++.+..
T Consensus 504 nVIaVGAv~~d~~------------------------------------------------------------------- 516 (639)
T PTZ00262 504 NVITVSNLIKDKN------------------------------------------------------------------- 516 (639)
T ss_pred CEEEEeeccCCCC-------------------------------------------------------------------
Confidence 8899988754310
Q ss_pred cEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCC
Q 044682 427 AGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNII 506 (755)
Q Consensus 427 ~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~ 506 (755)
..-..+.||++|..
T Consensus 517 -----------------------------------------------------------~~~s~s~~Snyg~~------- 530 (639)
T PTZ00262 517 -----------------------------------------------------------NQYSLSPNSFYSAK------- 530 (639)
T ss_pred -----------------------------------------------------------CcccccccccCCCC-------
Confidence 00123456666632
Q ss_pred CCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC
Q 044682 507 KPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTG 586 (755)
Q Consensus 507 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~ 586 (755)
++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+++++||+++|++||.++....
T Consensus 531 ~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~ 597 (639)
T PTZ00262 531 YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLK 597 (639)
T ss_pred cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCC
Confidence 34999999999999876 38999999999999999999999999999999999999999998764322
Q ss_pred CCcccCCCCCCCCCCcCC-CCccCccccCCCccccc
Q 044682 587 KNPITDYDGLKATPFEYG-AGHVNPNSAMDPGLVYD 621 (755)
Q Consensus 587 ~~~~~~~~~~~~~~~~~G-~G~vd~~~Al~~~lvyd 621 (755)
..+| .|+||+++|++.++-+.
T Consensus 598 --------------n~~~wgG~LDa~kAV~~Ai~~~ 619 (639)
T PTZ00262 598 --------------NKVKWGGYLDIHHAVNLAIASK 619 (639)
T ss_pred --------------CccccCcEEcHHHHHHHHHhcc
Confidence 2233 38999999999777553
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.2e-48 Score=407.55 Aligned_cols=244 Identities=28% Similarity=0.388 Sum_probs=199.1
Q ss_pred ccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCC
Q 044682 132 WNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPT 211 (755)
Q Consensus 132 ~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~ 211 (755)
|+++++|+||+|||||||||.+||+|.+. +...+|..
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~---------------- 37 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWTN---------------- 37 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccCC----------------
Confidence 89999999999999999999999999741 01111111
Q ss_pred CCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCC
Q 044682 212 PEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGV 291 (755)
Q Consensus 212 ~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gv 291 (755)
.....|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ ....++++++++||+++++
T Consensus 38 --~~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~----~~~~~~~~~a~~~a~~~~~ 100 (255)
T cd07479 38 --EKTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQ----VSYTSWFLDAFNYAILTKI 100 (255)
T ss_pred --CCCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCC----CchHHHHHHHHHhhhhcCC
Confidence 12345788999999999999741 248999999999999998765 3667889999999999999
Q ss_pred cEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc--ccCCCceEEeccccCCceeEEEEEeCCc
Q 044682 292 DVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV--VNLAPWLLTVGASTMDREFTSYVTLGDE 369 (755)
Q Consensus 292 dVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~~ 369 (755)
||||||||... +.+.++..++..+.++|++||+||||+|+...+. +...+++|+|||++.+
T Consensus 101 ~Vin~S~G~~~-----~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------ 163 (255)
T cd07479 101 DVLNLSIGGPD-----FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------ 163 (255)
T ss_pred CEEEeeccCCC-----CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC------------
Confidence 99999999763 2234455566678899999999999999865443 3456899999987542
Q ss_pred cEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCccc
Q 044682 370 QIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLP 449 (755)
Q Consensus 370 ~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p 449 (755)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCC----CCCCCCCceeeCCCeEEeeecCCC
Q 044682 450 TSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTI----NPNIIKPDITAPGVEIIAAYSEAV 525 (755)
Q Consensus 450 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa~~~~~ 525 (755)
+.++.|||+|++.+ ..+++||||+|||.+|+++...
T Consensus 164 --------------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~-- 203 (255)
T cd07479 164 --------------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK-- 203 (255)
T ss_pred --------------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC--
Confidence 56789999996532 2678999999999999987654
Q ss_pred CCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccC
Q 044682 526 APSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHP----DWSPAAIKSAIMTTATTTD 583 (755)
Q Consensus 526 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~~sp~~ik~~L~~TA~~~~ 583 (755)
..|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 204 -----------~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 -----------GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred -----------CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 3788999999999999999999999998 7899999999999998764
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=1.3e-48 Score=410.26 Aligned_cols=271 Identities=23% Similarity=0.249 Sum_probs=202.8
Q ss_pred CCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCC
Q 044682 135 GRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEH 214 (755)
Q Consensus 135 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~ 214 (755)
+++|+||+|+|||||||.+||++.+-. +.++.+...+... .
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~----------------------~~~l~~~~~~~~~-----------------~ 41 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQA----------------------SGDLPGNVNVLGD-----------------L 41 (275)
T ss_pred CCCCCceEEEEEeCCcccccccccccc----------------------CCCCCcceeeccc-----------------c
Confidence 578999999999999999998654311 0111111111110 1
Q ss_pred CCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEE
Q 044682 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVL 294 (755)
Q Consensus 215 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 294 (755)
....|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++||
T Consensus 42 ~~~~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~---------~~~~~i~~ai~~a~~~g~~Vi 94 (275)
T cd05562 42 DGGSGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG---------GGELDFAAAIRALAAAGADII 94 (275)
T ss_pred CCCCCCCchHHHHHHHHh------------------ccCCCCEEEEEecC---------CCHHHHHHHHHHHHHcCCCEE
Confidence 234578899999999994 78999999998863 457899999999999999999
Q ss_pred EEcCCCCCCCCCCchhhHHHHHHHHHHhc-CcEEEEeccCCCCCCCc-cccCCCceEEeccccCCceeEEEEEeCCccEE
Q 044682 295 SVSLGEPSHKNTEYFKDAIAIGSFHAMMH-GILVVAAAGNEGPKPDT-VVNLAPWLLTVGASTMDREFTSYVTLGDEQIF 372 (755)
Q Consensus 295 n~SlG~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~~-~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~ 372 (755)
|||||.... ..+.+..+..++.++.++ |++||+||||+|+.... .+...|++|+|||++.......+...+.
T Consensus 95 n~S~g~~~~--~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~---- 168 (275)
T cd05562 95 VDDIGYLNE--PFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP---- 168 (275)
T ss_pred EecccccCC--CcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc----
Confidence 999998641 112334566777788887 99999999999985433 3457899999999876532110000000
Q ss_pred EEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEE
Q 044682 373 KEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSL 452 (755)
Q Consensus 373 ~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 452 (755)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCC-eEEeeecCCCCCCCCC
Q 044682 453 VEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGV-EIIAAYSEAVAPSKSP 531 (755)
Q Consensus 453 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~ 531 (755)
.......+.||++||+. ++++||||+|||. ++.+++..
T Consensus 169 -------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------- 207 (275)
T cd05562 169 -------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------- 207 (275)
T ss_pred -------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC--------
Confidence 00012345678899987 7899999999975 44544433
Q ss_pred CCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCcc
Q 044682 532 SDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPN 611 (755)
Q Consensus 532 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~ 611 (755)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||+++...+ ++..||||+||+.
T Consensus 208 -----~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g------------~d~~~G~G~vda~ 270 (275)
T cd05562 208 -----DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG------------YDNASGSGLVDAD 270 (275)
T ss_pred -----CceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC------------CCCCcCcCcccHH
Confidence 37899999999999999999999999999999999999999998875443 5678999999999
Q ss_pred ccCC
Q 044682 612 SAMD 615 (755)
Q Consensus 612 ~Al~ 615 (755)
+|++
T Consensus 271 ~Av~ 274 (275)
T cd05562 271 RAVA 274 (275)
T ss_pred HHhh
Confidence 9987
No 5
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.9e-48 Score=412.58 Aligned_cols=290 Identities=27% Similarity=0.280 Sum_probs=191.2
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
|+||+|||||||||++||+|.+.... .|...+ .+...++ .+++.. + .....+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~--------d~~~~~~------~g~d~~----~------~~~~~~ 52 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKF--------DYKAYLL------PGMDKW----G------GFYVIM 52 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccccc--------CcCCCcc------CCcCCC----C------CccCCC
Confidence 89999999999999999999753110 010000 0001111 111111 0 012356
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccC-CcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHH-------hhhhh--h
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNG-YGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILS-------AFDDA--I 287 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~-~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~-------ai~~a--~ 287 (755)
.|.+||||||||||||+.....+.+++. ...+.||||+|+|+.+|++...+ .+....+.+ +++|+ .
T Consensus 53 ~D~~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~----~~~~~~~~~g~~~~~~~~~~~~~~ 128 (311)
T cd07497 53 YDFFSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD----VIYAWLWTAGFDPVDRKLSWIYTG 128 (311)
T ss_pred CCccccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCC----cchhhhhhhccchhhhhhhhhhcc
Confidence 7899999999999999864333222221 23469999999999999997543 233333333 33433 3
Q ss_pred hCCCcEEEEcCCCCCCCCCCc--hhhHHHHHHHH-HHhcCcEEEEeccCCCCCCCccc--cCCCceEEeccccCCceeEE
Q 044682 288 HDGVDVLSVSLGEPSHKNTEY--FKDAIAIGSFH-AMMHGILVVAAAGNEGPKPDTVV--NLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 288 ~~gvdVIn~SlG~~~~~~~~~--~~~~~~~~~~~-a~~~Gi~vV~AAGN~G~~~~~~~--~~~p~vitVgA~~~~~~~~~ 362 (755)
+++++|||||||........+ ..+..+..... +.++|+++|+||||+|+...++. ..++++|+|||++.....+.
T Consensus 129 ~~~~~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~ 208 (311)
T cd07497 129 GPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF 208 (311)
T ss_pred CCCceEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch
Confidence 689999999999863110101 11222222222 24899999999999998655443 36789999999865321100
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
+...
T Consensus 209 ~~~~---------------------------------------------------------------------------- 212 (311)
T cd07497 209 YLFG---------------------------------------------------------------------------- 212 (311)
T ss_pred hhhc----------------------------------------------------------------------------
Confidence 0000
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeec
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 522 (755)
......+.++.||||||+. ++++||||+|||++|+++.+
T Consensus 213 ---------------------------------------~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~ 251 (311)
T cd07497 213 ---------------------------------------YLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGR 251 (311)
T ss_pred ---------------------------------------cccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecc
Confidence 0001136789999999988 89999999999999999876
Q ss_pred CCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 044682 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHP------DWSPAAIKSAIMTTA 579 (755)
Q Consensus 523 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~~sp~~ik~~L~~TA 579 (755)
...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 252 ~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 252 VLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 532100 011124789999999999999999999999886 689999999999997
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=9.8e-48 Score=420.22 Aligned_cols=314 Identities=30% Similarity=0.369 Sum_probs=236.7
Q ss_pred ccccCCC-CCCceEEEEEccCCCCCCcCccCCCCCCCCC-----cccceeecCCCCcccccccccceeeccchhhhhhhc
Q 044682 130 SAWNKGR-FGEDVIIGVIDSGVWPESKSFSDEGMGPVPL-----RWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARA 203 (755)
Q Consensus 130 ~~~~~~~-~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~-----~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~ 203 (755)
.+|+++. +|+||+|||||||||++||+|.+....+... .+...+.. ....+++.+++..+.|.++...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI--GYGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC--CCCcccccCCCeeEcCCCCCCc----
Confidence 3688887 9999999999999999999998754332211 11111111 2244567778888877754211
Q ss_pred cCCCCCCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeec--CCCCCCCCChhHHHH
Q 044682 204 QNSSFYPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWN--VNGQPLDCRDSDILS 281 (755)
Q Consensus 204 ~g~~~~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~--~~~~~~~~~~~~i~~ 281 (755)
.....+..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. .. .+....+++
T Consensus 75 ----------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~----~~~~~~~~~ 135 (346)
T cd07475 75 ----------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGG----STYDDAYAK 135 (346)
T ss_pred ----------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCC----CCCHHHHHH
Confidence 11245789999999999999874322 1234699999999999999974 33 478889999
Q ss_pred hhhhhhhCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc----------------ccCC
Q 044682 282 AFDDAIHDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV----------------VNLA 345 (755)
Q Consensus 282 ai~~a~~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~----------------~~~~ 345 (755)
|++++++.|++|||||||.... .......+..++.++.++|++||+||||+|...... +...
T Consensus 136 ai~~a~~~g~~Vin~S~G~~~~--~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~ 213 (346)
T cd07475 136 AIEDAVKLGADVINMSLGSTAG--FVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATA 213 (346)
T ss_pred HHHHHHHcCCCEEEECCCcCCC--CCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccC
Confidence 9999999999999999998753 224455677777889999999999999998653221 1234
Q ss_pred CceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcC
Q 044682 346 PWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAG 425 (755)
Q Consensus 346 p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~G 425 (755)
+++|+||+++...
T Consensus 214 ~~~i~Vga~~~~~------------------------------------------------------------------- 226 (346)
T cd07475 214 DDVLTVASANKKV------------------------------------------------------------------- 226 (346)
T ss_pred CCceEEeeccccc-------------------------------------------------------------------
Confidence 6777777764210
Q ss_pred ccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCC
Q 044682 426 AAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNI 505 (755)
Q Consensus 426 a~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 505 (755)
.....+.++.||+|||+. ..+
T Consensus 227 ---------------------------------------------------------~~~~~~~~~~~S~~G~~~--~~~ 247 (346)
T cd07475 227 ---------------------------------------------------------PNPNGGQMSGFSSWGPTP--DLD 247 (346)
T ss_pred ---------------------------------------------------------CCCCCCccCCCcCCCCCc--ccC
Confidence 011136788999999987 889
Q ss_pred CCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhh----CCCCCHHH----HHHHHHh
Q 044682 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTL----HPDWSPAA----IKSAIMT 577 (755)
Q Consensus 506 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~~sp~~----ik~~L~~ 577 (755)
+||||+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++
T Consensus 248 ~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ 314 (346)
T cd07475 248 LKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMN 314 (346)
T ss_pred cCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 999999999999998765 37889999999999999999999997 78999877 7889999
Q ss_pred cccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCC
Q 044682 578 TATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615 (755)
Q Consensus 578 TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 615 (755)
||.+.... .....++.+.++|+|+||+.+||+
T Consensus 315 ta~~~~~~------~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 315 TATPPLDS------EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCccccc------CCCCccCCccccCcchhcHHHhhC
Confidence 99853211 123455678899999999999985
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-47 Score=408.79 Aligned_cols=294 Identities=28% Similarity=0.362 Sum_probs=228.6
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.+++..+.... ..
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~--------------------~~~~~~~~~d~~~~~~~~-------~~ 56 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG--------------------PGCKVAGGYDFVGDDYDG-------TN 56 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC--------------------CCceeccccccCCccccc-------cc
Confidence 899999999999999999999999999986310 011222333333111000 00
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
...+...+.|..+|||||||||+|+..+ ..+.||||+|+|+.+|++...+ ......+++++++|+++
T Consensus 57 ~~~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~~----~~~~~~~~~ai~~a~~~ 123 (312)
T cd07489 57 PPVPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCSG----STTEDTIIAAFLRAYED 123 (312)
T ss_pred CCCCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCCC----CCCHHHHHHHHHHHHhc
Confidence 1112345667899999999999998643 2348999999999999998665 47788899999999999
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC---ccccCCCceEEeccccCCceeEEEEEe
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD---TVVNLAPWLLTVGASTMDREFTSYVTL 366 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (755)
+++|||+|||... .+....+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 124 ~~~iIn~S~g~~~----~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~----------- 188 (312)
T cd07489 124 GADVITASLGGPS----GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD----------- 188 (312)
T ss_pred CCCEEEeCCCcCC----CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-----------
Confidence 9999999999873 334466777777888999999999999986532 2234568999999753
Q ss_pred CCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCC
Q 044682 367 GDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPY 446 (755)
Q Consensus 367 g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 446 (755)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCC
Q 044682 447 HLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVA 526 (755)
Q Consensus 447 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 526 (755)
+.||++||+. +...||||+|||++|+++++...
T Consensus 189 --------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~- 221 (312)
T cd07489 189 --------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG- 221 (312)
T ss_pred --------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-
Confidence 4689999987 78899999999999999987742
Q ss_pred CCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhC-CCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCC
Q 044682 527 PSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH-PDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGA 605 (755)
Q Consensus 527 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~ 605 (755)
+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++.... ... .....++..++||
T Consensus 222 ----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~-~~~--~~~~~~~~~~~G~ 288 (312)
T cd07489 222 ----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSD-GTS--ALPDLAPVAQQGA 288 (312)
T ss_pred ----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccC-CCc--cccCCCCHhhcCc
Confidence 268999999999999999999999999 99999999999999998875433 000 0011467789999
Q ss_pred CccCccccCCCcc
Q 044682 606 GHVNPNSAMDPGL 618 (755)
Q Consensus 606 G~vd~~~Al~~~l 618 (755)
|+||+.+|++..-
T Consensus 289 G~vn~~~a~~~~~ 301 (312)
T cd07489 289 GLVNAYKALYATT 301 (312)
T ss_pred ceeeHHHHhcCCc
Confidence 9999999999543
No 8
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=4.5e-47 Score=424.33 Aligned_cols=411 Identities=21% Similarity=0.194 Sum_probs=240.6
Q ss_pred CCCCceEEEEEccCCCCCCcCccC-CCCCCCCCcccceeecCCCCcccccccccceeeccch-hhhhhhccCCCCCCCCC
Q 044682 136 RFGEDVIIGVIDSGVWPESKSFSD-EGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQG-QIEHARAQNSSFYPTPE 213 (755)
Q Consensus 136 ~~G~gV~VgVIDtGid~~Hp~f~~-~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~-~~~~~~~~g~~~~~~~~ 213 (755)
++|+||+|||||||||+.||+|++ +|.+|+...|++...... ......+...+.+. .+... . .....+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~-----~~~~~~~~~~~~~~~i~~~~---~--~~~p~~ 70 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP-----PPGGYYGGGEYTEEIINAAL---A--SDNPYD 70 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCC-----CCccccCceEEeHHHHHHHH---h--cCCccc
Confidence 479999999999999999999996 678999999998876543 11112222222221 11110 0 011122
Q ss_pred CCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCC------CCCChhHHHHhhhhhh
Q 044682 214 HSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQP------LDCRDSDILSAFDDAI 287 (755)
Q Consensus 214 ~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~------~~~~~~~i~~ai~~a~ 287 (755)
.....|..||||||||||||+..++ ..+.||||+|+|+++|++...+... ..+..+++++||+|++
T Consensus 71 ~~~~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~ 142 (455)
T cd07478 71 IVPSRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLY 142 (455)
T ss_pred cCcCCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHH
Confidence 3456789999999999999996432 3358999999999999998775210 0167889999999998
Q ss_pred hC-----CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhc-CcEEEEeccCCCCCCCccccC-----CCc--eEEeccc
Q 044682 288 HD-----GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMH-GILVVAAAGNEGPKPDTVVNL-----APW--LLTVGAS 354 (755)
Q Consensus 288 ~~-----gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-----~p~--vitVgA~ 354 (755)
+. .+.|||||||.... .....++++.++..+..+ |++||+||||+|....+.... ... -+.|+.-
T Consensus 143 ~~a~~~~~p~VInlSlG~~~g--~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~ 220 (455)
T cd07478 143 DKALELNKPLVINISLGTNFG--SHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEG 220 (455)
T ss_pred HHHHHhCCCeEEEEccCcCCC--CCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCC
Confidence 74 46799999998632 233445566666666665 999999999999754443321 011 1233322
Q ss_pred cCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCC-----CCCCCccceEEEEecCCc-------chhhHHHHH
Q 044682 355 TMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGA-----IDPKKINGKILLCMNHTH-------GIDKSQLAA 422 (755)
Q Consensus 355 ~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~-----~~~~~~~gkivl~~~~~~-------~~~~~~~~~ 422 (755)
. ..+.-.++...-..+.-. |+.++......-.+.. ........+|.+..+... ...+..+
T Consensus 221 ~--~~~~~eiW~~~~d~~~v~----i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~-- 292 (455)
T cd07478 221 E--KGFNLEIWGDFPDRFSVS----IISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKN-- 292 (455)
T ss_pred C--cceEEEEecCCCCEEEEE----EECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccC--
Confidence 1 112212222111111111 1111100000000000 000000111111111110 0000000
Q ss_pred HcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEeccee----ecc-cCCCCccccccCCC
Q 044682 423 QAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKT----EFN-TKPSPQMTFFSSRG 497 (755)
Q Consensus 423 ~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~----~~~-~~~~~~~a~fSS~G 497 (755)
...+.+.|....... .......|+|.-.+...+ ..++......+.++..... +.. +...+.++.|||||
T Consensus 293 ~~~GiW~i~~~~~~~--~~g~~~~Wlp~~~~~~~~----t~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G 366 (455)
T cd07478 293 IKPGIWKIRLTGVSI--TDGRFDAWLPSRGLLSEN----TRFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRG 366 (455)
T ss_pred CCccceEEEEEeccC--CCceEEEEecCcCcCCCC----CEeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCC
Confidence 111222222222110 000012344433222111 1233344444444432211 111 12245699999999
Q ss_pred CCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhC------CCCCHHHH
Q 044682 498 PSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH------PDWSPAAI 571 (755)
Q Consensus 498 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------P~~sp~~i 571 (755)
|+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.+++++|
T Consensus 367 ~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~i 431 (455)
T cd07478 367 PTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKI 431 (455)
T ss_pred cCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHH
Confidence 998 899999999999999999986 389999999999999999999999975 56799999
Q ss_pred HHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCC
Q 044682 572 KSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAG 606 (755)
Q Consensus 572 k~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 606 (755)
|++|++||+++... .+++.+||||
T Consensus 432 k~~L~~tA~~~~~~-----------~~pn~~~GyG 455 (455)
T cd07478 432 KTYLIRGARRRPGD-----------EYPNPEWGYG 455 (455)
T ss_pred HHHHHHhCccCCCC-----------CCCCCCCCCC
Confidence 99999999887532 3578899998
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=2e-46 Score=392.53 Aligned_cols=251 Identities=27% Similarity=0.315 Sum_probs=205.1
Q ss_pred cccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCC
Q 044682 131 AWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYP 210 (755)
Q Consensus 131 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~ 210 (755)
+|..+++|+||+|||||+|||++||+|.+..+.+. ..+..
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~-------------------------~~~~~--------------- 41 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL-------------------------FTYAA--------------- 41 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc-------------------------cCccc---------------
Confidence 79999999999999999999999999986321110 00000
Q ss_pred CCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCC
Q 044682 211 TPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDG 290 (755)
Q Consensus 211 ~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~g 290 (755)
......|..+|||||||||+|+.. ..+.||||+|+|+.+|++...+. .++..++++||+||+++|
T Consensus 42 --~~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~~~---~~~~~~i~~ai~~a~~~g 106 (267)
T cd07476 42 --AACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAEDRR---GCSQLDLARAINLALEQG 106 (267)
T ss_pred --cCCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCCCC---CCCHHHHHHHHHHHHHCC
Confidence 012445778999999999998752 12589999999999999987652 245789999999999999
Q ss_pred CcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCcc
Q 044682 291 VDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQ 370 (755)
Q Consensus 291 vdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~ 370 (755)
++|||||||.... .......+..++..+.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 107 ~~VIN~S~G~~~~--~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------- 171 (267)
T cd07476 107 AHIINISGGRLTQ--TGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------- 171 (267)
T ss_pred CCEEEecCCcCCC--CCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-------------
Confidence 9999999997642 2234556777888899999999999999998766667788999999987642
Q ss_pred EEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccE
Q 044682 371 IFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPT 450 (755)
Q Consensus 371 ~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 450 (755)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCC
Q 044682 451 SLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKS 530 (755)
Q Consensus 451 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 530 (755)
+.++.||++|+.. .||||+|||.+|+++.+.
T Consensus 172 -------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~------- 202 (267)
T cd07476 172 -------------------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG------- 202 (267)
T ss_pred -------------------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-------
Confidence 3567899999764 388999999999999876
Q ss_pred CCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCC----CCHHHHHHHHHhcccccCCCC
Q 044682 531 PSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD----WSPAAIKSAIMTTATTTDHTG 586 (755)
Q Consensus 531 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~----~sp~~ik~~L~~TA~~~~~~~ 586 (755)
+.|..++|||||||||||++|||+|.+|. ++|++||++|++||+++...+
T Consensus 203 ------~~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 203 ------GEVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred ------CCeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 37899999999999999999999999887 899999999999999886543
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-45 Score=392.26 Aligned_cols=292 Identities=37% Similarity=0.530 Sum_probs=217.8
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
|+||+|||||+|||++||+|.+.. ..+.+++..+.|......... .............
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 58 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDYDPMD--TRPYPSPLGDASA 58 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCCCccc--ccccccccccCCC
Confidence 899999999999999999998531 122334444444432111000 0000000011234
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEc
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVS 297 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 297 (755)
.|..+|||||||+|+|...+. ..+.|+||+|+|+.+|++...+ .+...++++||+++++++++|||||
T Consensus 59 ~~~~~HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~----~~~~~~~~~ai~~a~~~~~~Iin~S 126 (295)
T cd07474 59 GDATGHGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGG----SGTTDVIIAAIEQAVDDGMDVINLS 126 (295)
T ss_pred CCCCCcHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCC----CCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 568999999999999986442 2358999999999999998555 4788999999999999999999999
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc--ccCCCceEEeccccCCceeEEEEEeCCccEEEEE
Q 044682 298 LGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV--VNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEI 375 (755)
Q Consensus 298 lG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~ 375 (755)
||... ....+.+..++..+.++|+++|+||||+|...... +...+++|+||+++....
T Consensus 127 ~g~~~----~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~---------------- 186 (295)
T cd07474 127 LGSSV----NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV---------------- 186 (295)
T ss_pred CCCCC----CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc----------------
Confidence 99873 22455677777889999999999999998765544 346789999998752110
Q ss_pred eecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeH
Q 044682 376 MQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEF 455 (755)
Q Consensus 376 l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~ 455 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCC-CCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCC
Q 044682 456 DDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRG-PSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDD 534 (755)
Q Consensus 456 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G-p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 534 (755)
........|+++| +.. ...+||||+|||++|++++...
T Consensus 187 -----------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~---------- 225 (295)
T cd07474 187 -----------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS---------- 225 (295)
T ss_pred -----------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC----------
Confidence 0012334455554 544 7889999999999999998763
Q ss_pred CCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCcccc
Q 044682 535 RRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSA 613 (755)
Q Consensus 535 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A 613 (755)
...|..++|||||||+|||++|||+|++|.|++++||++|++||++....+ ....++..+|+|+||+.+|
T Consensus 226 -~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~--------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 226 -GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD--------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred -CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC--------CCcCChhccCcceeccccC
Confidence 137899999999999999999999999999999999999999998876544 1122467899999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-45 Score=378.89 Aligned_cols=238 Identities=26% Similarity=0.357 Sum_probs=194.0
Q ss_pred eEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCC
Q 044682 141 VIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDL 220 (755)
Q Consensus 141 V~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 220 (755)
|+|||||||||.+||+|++. ++...++. .....|.
T Consensus 1 V~VavIDsGvd~~hp~l~~~--------------------------~~~~~~~~-------------------~~~~~~~ 35 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV--------------------------VIARLFFA-------------------GPGAPAP 35 (239)
T ss_pred CEEEEEeCCCCCCCcccccC--------------------------ccccccCC-------------------CCCCCCC
Confidence 78999999999999999743 11111111 0134568
Q ss_pred CCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCC
Q 044682 221 DGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGE 300 (755)
Q Consensus 221 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 300 (755)
.+|||||||||+|+... . .|+||+|+|+.+|++...+.. ..++..++++||+||++.|++|||||||.
T Consensus 36 ~~HGT~vAgiia~~~~~---------~--~Gvap~a~i~~~~v~~~~~~~-~~~~~~~i~~ai~~a~~~g~~VIn~S~g~ 103 (239)
T cd05561 36 SAHGTAVASLLAGAGAQ---------R--PGLLPGADLYGADVFGRAGGG-EGASALALARALDWLAEQGVRVVNISLAG 103 (239)
T ss_pred CCCHHHHHHHHhCCCCC---------C--cccCCCCEEEEEEEecCCCCC-CCcCHHHHHHHHHHHHHCCCCEEEeCCCC
Confidence 89999999999998521 1 699999999999999865311 03677899999999999999999999997
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC-CccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecc
Q 044682 301 PSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP-DTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGP 379 (755)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~p 379 (755)
.. ...+..++.++.++|++||+||||+|+.. ..++...+++|+|++++.+
T Consensus 104 ~~-------~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~---------------------- 154 (239)
T cd05561 104 PP-------NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR---------------------- 154 (239)
T ss_pred CC-------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC----------------------
Confidence 53 23456667788999999999999999754 3455567899999987543
Q ss_pred eeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHH
Q 044682 380 LTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQ 459 (755)
Q Consensus 380 lv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 459 (755)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCC
Q 044682 460 SIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPF 539 (755)
Q Consensus 460 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 539 (755)
+.++.||++|+.. ||+|||.+|+++.+. +.|
T Consensus 155 ----------------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~ 185 (239)
T cd05561 155 ----------------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGY 185 (239)
T ss_pred ----------------------------CCccccCCCCCcc--------eEEccccceecccCC-------------CCE
Confidence 4667899999977 999999999997765 379
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCC
Q 044682 540 NACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAG 606 (755)
Q Consensus 540 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G 606 (755)
..++|||||||||||++|||+|++| ++++|||++|++||+++...+ ++..||||
T Consensus 186 ~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~------------~d~~~G~G 239 (239)
T cd05561 186 RYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPG------------RDPVFGYG 239 (239)
T ss_pred EEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCC------------cCCCcCCC
Confidence 9999999999999999999999999 999999999999999887655 56789998
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=1.1e-44 Score=385.26 Aligned_cols=202 Identities=27% Similarity=0.365 Sum_probs=162.6
Q ss_pred CCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEE
Q 044682 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVL 294 (755)
Q Consensus 215 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 294 (755)
..+.+..+|||||||||+|...++. .+.||||+|+|+.+|++.... ....++++||+||+++|++||
T Consensus 79 ~~~~~~~gHGT~VAGiIaa~~~n~~--------g~~GvAp~a~i~~~k~~~~g~-----~~~~~i~~Ai~~a~~~g~~Ii 145 (291)
T cd07483 79 NGPISDADHGTHVAGIIAAVRDNGI--------GIDGVADNVKIMPLRIVPNGD-----ERDKDIANAIRYAVDNGAKVI 145 (291)
T ss_pred CCCCCCCCcHHHHHHHHhCcCCCCC--------ceEEECCCCEEEEEEEecCCC-----cCHHHHHHHHHHHHHCCCcEE
Confidence 3455789999999999999864432 248999999999999986432 667899999999999999999
Q ss_pred EEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc-----------ccCCCceEEeccccCCceeEEE
Q 044682 295 SVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV-----------VNLAPWLLTVGASTMDREFTSY 363 (755)
Q Consensus 295 n~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~-----------~~~~p~vitVgA~~~~~~~~~~ 363 (755)
|||||... ......+..++..+.++|+++|+||||+|...... +...+++|+|||++....
T Consensus 146 N~S~G~~~----~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~~---- 217 (291)
T cd07483 146 NMSFGKSF----SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYE---- 217 (291)
T ss_pred EeCCCCCC----CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccCC----
Confidence 99999753 12234456667788999999999999998643211 113467888888654310
Q ss_pred EEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCC
Q 044682 364 VTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLP 443 (755)
Q Consensus 364 ~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~ 443 (755)
T Consensus 218 -------------------------------------------------------------------------------- 217 (291)
T cd07483 218 -------------------------------------------------------------------------------- 217 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecC
Q 044682 444 LPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSE 523 (755)
Q Consensus 444 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~ 523 (755)
...++.||++|+. +|||+|||.+|+++.+.
T Consensus 218 -------------------------------------------~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~ 247 (291)
T cd07483 218 -------------------------------------------NNLVANFSNYGKK-------NVDVFAPGERIYSTTPD 247 (291)
T ss_pred -------------------------------------------cccccccCCCCCC-------ceEEEeCCCCeEeccCc
Confidence 1246889999974 35999999999999765
Q ss_pred CCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 524 AVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 524 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
..|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 248 -------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 248 -------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred -------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 37999999999999999999999999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-44 Score=378.12 Aligned_cols=248 Identities=29% Similarity=0.361 Sum_probs=196.8
Q ss_pred ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCC-CC
Q 044682 140 DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHST-AR 218 (755)
Q Consensus 140 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~ 218 (755)
||+||||||||+++||+|... ...++.++++.++|.+. ... ..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~-------------------~~~~~~~i~~~~~~~~~-----------------~~~~~~ 44 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFK-------------------HLFKNLRILGEYDFVDN-----------------SNNTNY 44 (261)
T ss_pred CCEEEEEccCCCccCcchhhh-------------------ccccCCceeeeecCccC-----------------CCCCCC
Confidence 799999999999999999521 11123456666666543 112 36
Q ss_pred CCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcC
Q 044682 219 DLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSL 298 (755)
Q Consensus 219 d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~Sl 298 (755)
|..+|||||||||+|+.. +.+.||||+|+|+.+|+....... .....++++|++++.+.|++||||||
T Consensus 45 ~~~~HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~--~~~~~~~~~ai~~a~~~~v~VIn~S~ 112 (261)
T cd07493 45 TDDDHGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASET--PVEEDNWVAAAEWADSLGVDIISSSL 112 (261)
T ss_pred CCCCchhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcc--cccHHHHHHHHHHHHHcCCCEEEeCC
Confidence 788999999999999852 235899999999999987643321 24566789999999999999999999
Q ss_pred CCCCCCCC---------CchhhHHHHHHHHHHhcCcEEEEeccCCCCCC---CccccCCCceEEeccccCCceeEEEEEe
Q 044682 299 GEPSHKNT---------EYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP---DTVVNLAPWLLTVGASTMDREFTSYVTL 366 (755)
Q Consensus 299 G~~~~~~~---------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~~p~vitVgA~~~~~~~~~~~~~ 366 (755)
|....... ......+..++..+.++|+++|+||||+|... ...+...+++|+|||.+.+
T Consensus 113 G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~--------- 183 (261)
T cd07493 113 GYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN--------- 183 (261)
T ss_pred CcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC---------
Confidence 98742111 00123566777888999999999999999763 3445567999999987542
Q ss_pred CCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCC
Q 044682 367 GDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPY 446 (755)
Q Consensus 367 g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~ 446 (755)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCC
Q 044682 447 HLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVA 526 (755)
Q Consensus 447 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 526 (755)
+.++.||++||+. ++++||||+|||.+|++....
T Consensus 184 -----------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~--- 217 (261)
T cd07493 184 -----------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD--- 217 (261)
T ss_pred -----------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC---
Confidence 4678899999987 889999999999999985443
Q ss_pred CCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 527 PSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 527 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 ----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 ----------GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred ----------CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 37899999999999999999999999999999999999999984
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=3.7e-44 Score=376.83 Aligned_cols=247 Identities=32% Similarity=0.402 Sum_probs=194.5
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
|+||+|||||+||+++||+|.+. |++... ..+.....+.+ .......+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~~~~~~~~d--------------~~~~~~~~ 48 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSADHDYNWFD--------------PVGNTPLP 48 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCccccccccc--------------CCCCCCCC
Confidence 89999999999999999999863 111000 00000000000 00112355
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh---------
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH--------- 288 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~--------- 288 (755)
.|..+|||||||||+|.... +...||||+|+|+.+|++.... +...+++++++++++
T Consensus 49 ~d~~~HGT~vagii~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~ 114 (264)
T cd07481 49 YDDNGHGTHTMGTMVGNDGD---------GQQIGVAPGARWIACRALDRNG-----GNDADYLRCAQWMLAPTDSAGNPA 114 (264)
T ss_pred CCCCCchhhhhhheeecCCC---------CCceEECCCCeEEEEEeecCCC-----CcHHHHHHHHHHHHhccccccccc
Confidence 67899999999999987522 2238999999999999998764 778899999999875
Q ss_pred ---CCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc---cccCCCceEEeccccCCceeEE
Q 044682 289 ---DGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT---VVNLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 289 ---~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~ 362 (755)
.|++|||||||... . ....+..++..+.++|++||+||||+|..... .+...|++|+||+++.+
T Consensus 115 ~~~~~~~Iin~S~G~~~---~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----- 184 (264)
T cd07481 115 DPDLAPDVINNSWGGPS---G--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----- 184 (264)
T ss_pred ccccCCeEEEeCCCcCC---C--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----
Confidence 78999999999874 1 23445556667888999999999999865443 34567899999987643
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeec
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYS 522 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~ 522 (755)
+.++.||++||.. .+++||||+|||.+|+++.+
T Consensus 185 ---------------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~ 217 (264)
T cd07481 185 ---------------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVP 217 (264)
T ss_pred ---------------------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecC
Confidence 4678999999987 68999999999999999987
Q ss_pred CCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 044682 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD--WSPAAIKSAIMTTAT 580 (755)
Q Consensus 523 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--~sp~~ik~~L~~TA~ 580 (755)
. +.|..++|||||||+|||++|||+|++|. +++.|||++|++||+
T Consensus 218 ~-------------~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 218 G-------------GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred C-------------CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 6 37899999999999999999999999999 999999999999984
No 15
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.1e-43 Score=385.16 Aligned_cols=223 Identities=27% Similarity=0.323 Sum_probs=167.0
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEc
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVS 297 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~S 297 (755)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++...+. .+...++++||++|++.|++|||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs--~~t~~~l~~ai~~ai~~gadVIN~S 251 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGS--METGTALVRAMIAAIETKCDLINMS 251 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCC--ccchHHHHHHHHHHHHcCCCEEEec
Confidence 478899999999999985332 335899999999999998654311 1334679999999999999999999
Q ss_pred CCCCCCCCCCchhhHHHHHH-HHHHhcCcEEEEeccCCCCCCCcccc---CCCceEEeccccCCceeEEEEEeCCccEEE
Q 044682 298 LGEPSHKNTEYFKDAIAIGS-FHAMMHGILVVAAAGNEGPKPDTVVN---LAPWLLTVGASTMDREFTSYVTLGDEQIFK 373 (755)
Q Consensus 298 lG~~~~~~~~~~~~~~~~~~-~~a~~~Gi~vV~AAGN~G~~~~~~~~---~~p~vitVgA~~~~~~~~~~~~~g~~~~~~ 373 (755)
||.... ... ...+...+ ..+.++|+++|+||||+|+..+++.. ..+++|+|||+...........+
T Consensus 252 lG~~~~--~~~-~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~------- 321 (412)
T cd04857 252 YGEATH--WPN-SGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL------- 321 (412)
T ss_pred CCcCCC--Ccc-chHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc-------
Confidence 998742 111 11222223 23457899999999999988776543 35899999997532210000000
Q ss_pred EEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEe
Q 044682 374 EIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLV 453 (755)
Q Consensus 374 g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i 453 (755)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCC
Q 044682 454 EFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSD 533 (755)
Q Consensus 454 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 533 (755)
.....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 322 -----------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~--------- 361 (412)
T cd04857 322 -----------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT--------- 361 (412)
T ss_pred -----------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC---------
Confidence 001136789999999998 8999999999999998752111
Q ss_pred CCCcCCeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 044682 534 DRRIPFNACFGTSMSTPHISGIAGLLKT----LHPDWSPAAIKSAIMTTATTT 582 (755)
Q Consensus 534 ~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~ 582 (755)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 --~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 --LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred --CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 13789999999999999999999975 478999999999999999763
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=6e-44 Score=377.07 Aligned_cols=264 Identities=25% Similarity=0.299 Sum_probs=202.1
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|..+++|+||+|+|||||||++||+|.+.... .+...+...+... ..
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~------------------------~~~~~~~~~~~~~-------~~ 49 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG------------------------DGYDPAVNGYNFV-------PN 49 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC------------------------CCcccccCCcccc-------cc
Confidence 4799999999999999999999999999864100 0000000000000 00
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
.........|..||||||||||+|...+....-|++ .+.|+||+|+|+.+|++.... .+...+++++|+++++.
T Consensus 50 ~~~~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~----~~~~~~~~~ai~~a~~~ 123 (273)
T cd07485 50 VGDIDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRY----YVGDDAVAAAIVYAADN 123 (273)
T ss_pred cCCcCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCC----CccHHHHHHHHHHHHHc
Confidence 000123455788999999999999864433222222 346799999999999998765 47888999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhc-------CcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEE
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMH-------GILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~ 362 (755)
|++|||||||... ...+...+..++..+.++ |++||+||||+|......+...+++|+||+++.+
T Consensus 124 g~~Vin~S~g~~~---~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~----- 195 (273)
T cd07485 124 GAVILQNSWGGTG---GGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN----- 195 (273)
T ss_pred CCcEEEecCCCCC---ccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-----
Confidence 9999999999874 123344556666677777 9999999999998776666778999999987643
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCC-eEEeee
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGV-EIIAAY 521 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~-~I~sa~ 521 (755)
+.++.||++|+.. ||+|||. .|++++
T Consensus 196 ---------------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~ 222 (273)
T cd07485 196 ---------------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTV 222 (273)
T ss_pred ---------------------------------------------CCcCccccCCCce--------EEEeCCCCcccccc
Confidence 4667899999987 9999999 899887
Q ss_pred cCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 044682 522 SEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPD-WSPAAIKSAIMTT 578 (755)
Q Consensus 522 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-~sp~~ik~~L~~T 578 (755)
+.... .....|..++|||||||+|||++|||+|++|. ++|.|||++|++|
T Consensus 223 ~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 223 PKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 65321 11247899999999999999999999999999 9999999999986
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.9e-43 Score=370.29 Aligned_cols=258 Identities=32% Similarity=0.488 Sum_probs=204.9
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
|+||+|+|||+||+++||+|.+... ....+.... ......
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~--------------------------~~~~~~~~~--------------~~~~~~ 40 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII--------------------------RFADFVNTV--------------NGRTTP 40 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc--------------------------ccccccccc--------------cCCCCC
Confidence 8999999999999999999986411 001111000 012355
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC----CCcE
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD----GVDV 293 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~----gvdV 293 (755)
.|..+|||||||+|+|...+. .+.+.||||+|+|+.+|+++..+ .....++++|++++++. +++|
T Consensus 41 ~d~~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~----~~~~~~~~~ai~~~~~~~~~~~~~I 109 (264)
T cd07487 41 YDDNGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSG----SGSESDIIAGIDWVVENNEKYNIRV 109 (264)
T ss_pred CCCCCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCC----CccHHHHHHHHHHHHhhccccCceE
Confidence 677899999999999986432 23359999999999999998776 46788999999999998 9999
Q ss_pred EEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC--ccccCCCceEEeccccCCceeEEEEEeCCccE
Q 044682 294 LSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD--TVVNLAPWLLTVGASTMDREFTSYVTLGDEQI 371 (755)
Q Consensus 294 In~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~ 371 (755)
||||||.... .......+..++..+.++|++||+||||+|.... ..+...+++|+|||++.+...
T Consensus 110 in~S~g~~~~--~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~~----------- 176 (264)
T cd07487 110 VNLSLGAPPD--PSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGPH----------- 176 (264)
T ss_pred EEeccCCCCC--CCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCCC-----------
Confidence 9999998752 2445677788888999999999999999997765 444567899999998654210
Q ss_pred EEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEE
Q 044682 372 FKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTS 451 (755)
Q Consensus 372 ~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~ 451 (755)
T Consensus 177 -------------------------------------------------------------------------------- 176 (264)
T cd07487 177 -------------------------------------------------------------------------------- 176 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCC
Q 044682 452 LVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSP 531 (755)
Q Consensus 452 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 531 (755)
...++.||++||+. ++++||||+|||++|+++.+.... .
T Consensus 177 -----------------------------------~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~----~ 215 (264)
T cd07487 177 -----------------------------------DDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGN----P 215 (264)
T ss_pred -----------------------------------CccccccccCCCCC--CCCcCCCEEccccceEeccccccc----c
Confidence 12478899999988 899999999999999998654211 1
Q ss_pred CCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 532 SDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 532 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
.......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 216 ~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 216 GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 1122357899999999999999999999999999999999999999984
No 18
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-44 Score=370.56 Aligned_cols=331 Identities=24% Similarity=0.326 Sum_probs=255.5
Q ss_pred CCceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCccc------cc------------ccEEEEec---ceeeeE
Q 044682 22 AKKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKK------AR------------DSISCSYG---RHINGF 80 (755)
Q Consensus 22 ~~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~------------~~i~~~y~---~~~~g~ 80 (755)
....|||.|++... ++-.+.|.++++...+.... +- ..|.+.|. .+|+|.
T Consensus 79 ~~~~YiV~f~~~~~---------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y 149 (501)
T KOG1153|consen 79 LPSRYIVVFKPDAS---------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGY 149 (501)
T ss_pred cccceEEEeCCCcc---------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcc
Confidence 45789999995544 35566777777776543211 00 01333333 377888
Q ss_pred EEEeCHHHHHHHhCCCCeEEEEeCccccccc-----CCCccccCCccccccc-------ccccccCCCCCCceEEEEEcc
Q 044682 81 AAILEEEHAQQLAKHPEVLSIFLDEGRKVQT-----TRSWDFLGLEKDNVIS-------QNSAWNKGRFGEDVIIGVIDS 148 (755)
Q Consensus 81 s~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~~~-------~~~~~~~~~~G~gV~VgVIDt 148 (755)
.-.++.+-+..+++.|-+..++++...+... .+...-||+-++.+.. ...++ .-..|+||...|+||
T Consensus 150 ~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y-~~~aG~gvtaYv~DT 228 (501)
T KOG1153|consen 150 TGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVY-EIDAGKGVTAYVLDT 228 (501)
T ss_pred ccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEe-ecccCCCeEEEEecc
Confidence 8889999999999999999999988775443 2222334444433211 11122 233899999999999
Q ss_pred CCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCCCCCchhhh
Q 044682 149 GVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLDGHGTHAA 228 (755)
Q Consensus 149 Gid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~gHGThVA 228 (755)
||+.+||+|.++ +.| |.| .. ......|++|||||||
T Consensus 229 GVni~H~dFegR------a~w-Ga~------------------i~-------------------~~~~~~D~nGHGTH~A 264 (501)
T KOG1153|consen 229 GVNIEHPDFEGR------AIW-GAT------------------IP-------------------PKDGDEDCNGHGTHVA 264 (501)
T ss_pred cccccccccccc------eec-ccc------------------cC-------------------CCCcccccCCCcceee
Confidence 999999999875 122 111 10 0124568999999999
Q ss_pred HhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC---------CCcEEEEcCC
Q 044682 229 STAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD---------GVDVLSVSLG 299 (755)
Q Consensus 229 giiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~---------gvdVIn~SlG 299 (755)
|+|++.. .|||.+++|+++||+.++| .+..+++++++|++++. +..|.|||+|
T Consensus 265 G~I~sKt--------------~GvAK~s~lvaVKVl~~dG----sGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlG 326 (501)
T KOG1153|consen 265 GLIGSKT--------------FGVAKNSNLVAVKVLRSDG----SGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLG 326 (501)
T ss_pred eeeeccc--------------cccccccceEEEEEeccCC----cEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecC
Confidence 9999986 7999999999999999998 68999999999999986 5689999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcccc-CCCceEEeccccCCceeEEEEEeCCccEEEEEeec
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVN-LAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQG 378 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~-~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~ 378 (755)
+.. .-.+..|+.+|.+.||.+++||||+..+++..++ .+..+|||||++..
T Consensus 327 g~~-------S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~--------------------- 378 (501)
T KOG1153|consen 327 GFR-------SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN--------------------- 378 (501)
T ss_pred Ccc-------cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc---------------------
Confidence 874 3457778889999999999999999988876665 67899999998753
Q ss_pred ceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhH
Q 044682 379 PLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDA 458 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g 458 (755)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcC
Q 044682 459 QSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIP 538 (755)
Q Consensus 459 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 538 (755)
+.+|.||+||+|+ ||.|||++|+|+|.+... .
T Consensus 379 -----------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------a 410 (501)
T KOG1153|consen 379 -----------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------A 410 (501)
T ss_pred -----------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------c
Confidence 6889999999999 999999999999998543 5
Q ss_pred CeeeccccchhhhHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 044682 539 FNACFGTSMSTPHISGIAGLLKTLHPD---------WSPAAIKSAIMTTAT 580 (755)
Q Consensus 539 y~~~sGTSmAaP~VAG~aALl~q~~P~---------~sp~~ik~~L~~TA~ 580 (755)
-..+||||||+|||||++|.+++.+|. .||.++|..++.-..
T Consensus 411 t~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 411 TAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 678999999999999999999999883 388888888877654
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.7e-42 Score=362.62 Aligned_cols=233 Identities=31% Similarity=0.414 Sum_probs=194.7
Q ss_pred cccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCC
Q 044682 131 AWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYP 210 (755)
Q Consensus 131 ~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~ 210 (755)
+|..+++|+||+|||||+||+++||+|.+. +...+.+...
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~~-------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVGG-------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCCC--------------
Confidence 778889999999999999999999999753 1112222211
Q ss_pred CCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC-
Q 044682 211 TPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD- 289 (755)
Q Consensus 211 ~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~- 289 (755)
....|..+|||||||||+++. .||||+|+|+.+|+++..+ ....++++++++++++.
T Consensus 57 ----~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~----~~~~~~~~~ai~~~~~~~ 114 (255)
T cd04077 57 ----DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNG----SGTLSGIIAGLEWVANDA 114 (255)
T ss_pred ----CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCC----CcCHHHHHHHHHHHHhcc
Confidence 125678899999999999874 6999999999999998775 47788999999999987
Q ss_pred ----CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC-ccccCCCceEEeccccCCceeEEEE
Q 044682 290 ----GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD-TVVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 290 ----gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
+++|||+|||... ...+..++..+.++|+++|+||||+|.... ..+...|++|+||+++.+
T Consensus 115 ~~~~~~~iin~S~g~~~-------~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------- 180 (255)
T cd04077 115 TKRGKPAVANMSLGGGA-------STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------- 180 (255)
T ss_pred cccCCCeEEEeCCCCCC-------CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------
Confidence 4899999999863 344556667888999999999999997653 445567999999997653
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCC
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEA 524 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 524 (755)
+.++.||++||.. ||+|||.+|.++....
T Consensus 181 -------------------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~ 209 (255)
T cd04077 181 -------------------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS 209 (255)
T ss_pred -------------------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC
Confidence 3578899999987 9999999999988742
Q ss_pred CCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 044682 525 VAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATT 581 (755)
Q Consensus 525 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~ 581 (755)
. ..|..++|||||||+|||++|||+|++|.++++|||++|++||++
T Consensus 210 ~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 210 D-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred C-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 1 378999999999999999999999999999999999999999964
No 20
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.7e-43 Score=371.68 Aligned_cols=269 Identities=25% Similarity=0.230 Sum_probs=188.2
Q ss_pred EEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCCC
Q 044682 142 IIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDLD 221 (755)
Q Consensus 142 ~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~ 221 (755)
+|||||||||.+||+|.+. +.....+.. ......|..
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~-----------------~~~~~~d~~ 38 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSD-----------------EPGWTADDL 38 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hcccccccc-----------------CCCCcCCCC
Confidence 7999999999999999742 111111110 001156899
Q ss_pred CCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCC---CcEEEEcC
Q 044682 222 GHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDG---VDVLSVSL 298 (755)
Q Consensus 222 gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~g---vdVIn~Sl 298 (755)
||||||||||++.... .....|+||+++|+.+|++...+.........++++||+|+++.+ ++||||||
T Consensus 39 gHGT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~Sl 110 (291)
T cd04847 39 GHGTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSL 110 (291)
T ss_pred CChHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEec
Confidence 9999999999976432 123479999999999999988641111356788999999999853 49999999
Q ss_pred CCCCCCCCCchhhHHHHHHH-HHHhcCcEEEEeccCCCCCCCcc------------ccCCCceEEeccccCCceeEEEEE
Q 044682 299 GEPSHKNTEYFKDAIAIGSF-HAMMHGILVVAAAGNEGPKPDTV------------VNLAPWLLTVGASTMDREFTSYVT 365 (755)
Q Consensus 299 G~~~~~~~~~~~~~~~~~~~-~a~~~Gi~vV~AAGN~G~~~~~~------------~~~~p~vitVgA~~~~~~~~~~~~ 365 (755)
|......... ...+..++. .+.++|++||+||||+|...... +..++++|+|||++.+.....+..
T Consensus 111 G~~~~~~~~~-~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~ 189 (291)
T cd04847 111 GSPLPIDDGR-PSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR 189 (291)
T ss_pred CCCCCccCCC-CCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc
Confidence 9874211111 113333333 35689999999999999775432 235679999999876542110000
Q ss_pred eCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCC
Q 044682 366 LGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLP 445 (755)
Q Consensus 366 ~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~ 445 (755)
.
T Consensus 190 ~------------------------------------------------------------------------------- 190 (291)
T cd04847 190 Y------------------------------------------------------------------------------- 190 (291)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCC
Q 044682 446 YHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAV 525 (755)
Q Consensus 446 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~ 525 (755)
+.......+.||+|||.. ++.+||||+|||++|.++.+...
T Consensus 191 -------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~ 231 (291)
T cd04847 191 -------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNA 231 (291)
T ss_pred -------------------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCC
Confidence 000012234499999988 89999999999999988654311
Q ss_pred CC-----CCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 526 AP-----SKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 526 ~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
.. ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 232 ADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00 00001122358999999999999999999999999999999999999999984
No 21
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=4.7e-42 Score=360.31 Aligned_cols=240 Identities=30% Similarity=0.385 Sum_probs=201.5
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|..+ +|+||+|+|||+||+++||+|... ++...+.+.++
T Consensus 20 ~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~~------------- 60 (260)
T cd07484 20 KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVDN------------- 60 (260)
T ss_pred HHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccCC-------------
Confidence 889988 999999999999999999998432 22233333221
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
...+.|..+|||||||||++...++ ..+.|+||+|+|+.+|+++..+ .+...+++++|+++++.
T Consensus 61 ----~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~----~~~~~~~~~ai~~a~~~ 124 (260)
T cd07484 61 ----DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANG----SGSLADIANGIRYAADK 124 (260)
T ss_pred ----CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCC----CcCHHHHHHHHHHHHHC
Confidence 1235678899999999999875332 2348999999999999998765 47888999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCc
Q 044682 290 GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDE 369 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~ 369 (755)
|++|||+|||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 125 ~~~iin~S~g~~~------~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------ 186 (260)
T cd07484 125 GAKVINLSLGGGL------GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------ 186 (260)
T ss_pred CCeEEEecCCCCC------CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------
Confidence 9999999999873 2345666667888999999999999998877888888999999987643
Q ss_pred cEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCccc
Q 044682 370 QIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLP 449 (755)
Q Consensus 370 ~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p 449 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCC
Q 044682 450 TSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSK 529 (755)
Q Consensus 450 ~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 529 (755)
+..+.||++|+.. |++|||.+|+++.+.
T Consensus 187 --------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------ 214 (260)
T cd07484 187 --------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD------ 214 (260)
T ss_pred --------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC------
Confidence 4567899999876 999999999998765
Q ss_pred CCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 044682 530 SPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTT 582 (755)
Q Consensus 530 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~ 582 (755)
+.|..++|||||||+|||++||++|++| +++.+||++|++||+++
T Consensus 215 -------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 -------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred -------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 3789999999999999999999999999 99999999999999875
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-42 Score=357.78 Aligned_cols=253 Identities=30% Similarity=0.375 Sum_probs=187.6
Q ss_pred ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCC
Q 044682 140 DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARD 219 (755)
Q Consensus 140 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 219 (755)
||+|||||+|||++||+|.+. +...+.|..+. ........|
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~-------------~~~~~~~~d 41 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENR-------------RISATEVFD 41 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCC-------------CCCCCCCCC
Confidence 799999999999999999753 22222222110 001234567
Q ss_pred CCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCC
Q 044682 220 LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLG 299 (755)
Q Consensus 220 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 299 (755)
..+|||||||||+|+.. ++...||||+|+|+.+|++...+ +...+++++|+|+++.+++|||||||
T Consensus 42 ~~~HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~~-----~~~~~~~~ai~~a~~~~~~Vin~S~g 107 (254)
T cd07490 42 AGGHGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDGG-----GSLSQIIAGMEWAVEKDADVVSMSLG 107 (254)
T ss_pred CCCcHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCCC-----CcHHHHHHHHHHHHhCCCCEEEECCC
Confidence 88999999999999863 23358999999999999998764 77899999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHh-cCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeec
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMM-HGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQG 378 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~ 378 (755)
.... . .+.+..++..+.+ +|++||+||||+|......+...+++|+|||++.+.....+...
T Consensus 108 ~~~~---~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------ 170 (254)
T cd07490 108 GTYY---S--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------ 170 (254)
T ss_pred cCCC---C--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------
Confidence 8742 1 3444444444443 69999999999998766666678999999998754311000000
Q ss_pred ceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhH
Q 044682 379 PLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDA 458 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g 458 (755)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcC
Q 044682 459 QSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIP 538 (755)
Q Consensus 459 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 538 (755)
.......++.+|.. .....|||++|||.+|+++..... ....
T Consensus 171 ----------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~~---------~~~~ 212 (254)
T cd07490 171 ----------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGAN---------GDGQ 212 (254)
T ss_pred ----------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCCC---------CCCC
Confidence 00112223334433 256789999999999998653211 1247
Q ss_pred CeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 539 FNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 539 y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
|..++|||||||+|||++|||+|++|++++.|||++|++||+
T Consensus 213 ~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 213 YTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred eeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999984
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-41 Score=361.41 Aligned_cols=251 Identities=23% Similarity=0.296 Sum_probs=184.1
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
.+|+++++|+||+||||||||+..|| |...++. +. ..+..+
T Consensus 12 ~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~~------------------~~~~~~------------- 52 (298)
T cd07494 12 RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------VR------------------VVLAPG------------- 52 (298)
T ss_pred HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------ce------------------eecCCC-------------
Confidence 89999999999999999999999998 7643211 00 000000
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD 289 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~ 289 (755)
......|+.|||||||+++ .||||+|+|+.+|++. ....++++||+||+++
T Consensus 53 ---~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~--------~~~~~~~~ai~~a~~~ 103 (298)
T cd07494 53 ---ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGG--------PDLVNSVGAFKKAISL 103 (298)
T ss_pred ---CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccC--------CCcHHHHHHHHHHHhc
Confidence 1124567889999999864 5899999999999985 3456789999999999
Q ss_pred CCcEEEEcCCCCCCCCC-------CchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEE
Q 044682 290 GVDVLSVSLGEPSHKNT-------EYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTS 362 (755)
Q Consensus 290 gvdVIn~SlG~~~~~~~-------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~ 362 (755)
+++|||||||....... ......+..++..|.++|++||+||||++. .++...|++|+|||++.+..
T Consensus 104 g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~--- 177 (298)
T cd07494 104 SPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED--- 177 (298)
T ss_pred CCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---
Confidence 99999999998632111 112345777788899999999999999974 45778899999999854320
Q ss_pred EEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCC
Q 044682 363 YVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESL 442 (755)
Q Consensus 363 ~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~ 442 (755)
T Consensus 178 -------------------------------------------------------------------------------- 177 (298)
T cd07494 178 -------------------------------------------------------------------------------- 177 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccC--CCCCCCCCCCCCCcee---------
Q 044682 443 PLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSS--RGPSTINPNIIKPDIT--------- 511 (755)
Q Consensus 443 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS--~Gp~~~~~~~~KPDI~--------- 511 (755)
......+++ +... ..+++.|||++
T Consensus 178 --------------------------------------------g~~~~~~~~~~~~s~-~~~g~~~pd~~~~~g~~~~~ 212 (298)
T cd07494 178 --------------------------------------------GARRASSYASGFRSK-IYPGRQVPDVCGLVGMLPHA 212 (298)
T ss_pred --------------------------------------------CcccccccccCcccc-cCCCCccCccccccCcCCcc
Confidence 000111111 1111 23677888874
Q ss_pred -------eCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC
Q 044682 512 -------APGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDH 584 (755)
Q Consensus 512 -------APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~ 584 (755)
|||..|.++...... .......|..++|||||||||||++|||+|++|.|+++|||.+|+.||+++..
T Consensus 213 ~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 213 AYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 799998765532100 01122479999999999999999999999999999999999999999987754
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=1.7e-41 Score=362.48 Aligned_cols=279 Identities=29% Similarity=0.352 Sum_probs=199.5
Q ss_pred CCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCC
Q 044682 134 KGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPE 213 (755)
Q Consensus 134 ~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~ 213 (755)
++++|+||+|||||+|||++||+|.+..... ....++++.....+.
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~~---------------~~~~~~~~~~~~~~~------------------- 47 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFNK---------------TNLFHRKIVRYDSLS------------------- 47 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcCc---------------CccCcccEEEeeccC-------------------
Confidence 5789999999999999999999997632100 001123332222111
Q ss_pred CCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcE
Q 044682 214 HSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDV 293 (755)
Q Consensus 214 ~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdV 293 (755)
....|..+|||||||||+|...+.... ..+.||||+|+|+.+|++...+. .....++..+++++.+.+++|
T Consensus 48 -~~~~d~~~HGT~vAgiia~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~V 118 (293)
T cd04842 48 -DTKDDVDGHGTHVAGIIAGKGNDSSSI-----SLYKGVAPKAKLYFQDIGDTSGN---LSSPPDLNKLFSPMYDAGARI 118 (293)
T ss_pred -CCCCCCCCCcchhheeeccCCcCCCcc-----cccccccccCeEEEEEeeccCcc---ccCCccHHHHHHHHHHhCCEE
Confidence 122278999999999999987543211 13589999999999999887642 256677899999999999999
Q ss_pred EEEcCCCCCCCCCCchhhHHHHHHHHH-Hh-cCcEEEEeccCCCCCCC---ccccCCCceEEeccccCCceeEEEEEeCC
Q 044682 294 LSVSLGEPSHKNTEYFKDAIAIGSFHA-MM-HGILVVAAAGNEGPKPD---TVVNLAPWLLTVGASTMDREFTSYVTLGD 368 (755)
Q Consensus 294 In~SlG~~~~~~~~~~~~~~~~~~~~a-~~-~Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~ 368 (755)
||||||.... . .......++.++ .+ +|++||+||||+|.... ..+...+++|+|||++........
T Consensus 119 in~S~G~~~~---~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~----- 189 (293)
T cd04842 119 SSNSWGSPVN---N-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE----- 189 (293)
T ss_pred EeccCCCCCc---c-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc-----
Confidence 9999998742 1 112222223222 23 89999999999997765 455578999999998765311000
Q ss_pred ccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcc
Q 044682 369 EQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHL 448 (755)
Q Consensus 369 ~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~ 448 (755)
.|..
T Consensus 190 ---------------------~~~~------------------------------------------------------- 193 (293)
T cd04842 190 ---------------------GGLG------------------------------------------------------- 193 (293)
T ss_pred ---------------------cccc-------------------------------------------------------
Confidence 0000
Q ss_pred cEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCC
Q 044682 449 PTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPS 528 (755)
Q Consensus 449 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 528 (755)
.......++.||++||+. ++++||||+|||++|+++.+...
T Consensus 194 ----------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~--- 234 (293)
T cd04842 194 ----------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG--- 234 (293)
T ss_pred ----------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC---
Confidence 001135789999999987 89999999999999999975520
Q ss_pred CCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 044682 529 KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLH-----P---DWSPAAIKSAIMTTAT 580 (755)
Q Consensus 529 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~~sp~~ik~~L~~TA~ 580 (755)
.........|...+|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 235 -~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 235 -GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred -CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 0011123478899999999999999999999985 4 6677899999999985
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.7e-41 Score=352.23 Aligned_cols=241 Identities=27% Similarity=0.350 Sum_probs=192.0
Q ss_pred eEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCC
Q 044682 141 VIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDL 220 (755)
Q Consensus 141 V~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 220 (755)
|+|||||+||+++||+|.+. .+++....+.. +.....|.
T Consensus 1 V~VaviDsGi~~~hp~l~~~------------------------~~~~~~~~~~~-----------------~~~~~~~~ 39 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK------------------------PKLVPGWNFVS-----------------NNDPTSDI 39 (242)
T ss_pred CEEEEecCCCCCCChhhccC------------------------cCccCCccccC-----------------CCCCCCCC
Confidence 68999999999999999852 01111111111 11245678
Q ss_pred CCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCC
Q 044682 221 DGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGE 300 (755)
Q Consensus 221 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 300 (755)
.+|||||||||+|+..+. ..+.||||+|+|+.+|++...+ .+...++.++++++++.+++|||||||.
T Consensus 40 ~~HGT~vAgiiag~~~~~--------~~~~Gvap~a~i~~~~~~~~~~----~~~~~~~~~ai~~a~~~~~~Vin~S~g~ 107 (242)
T cd07498 40 DGHGTACAGVAAAVGNNG--------LGVAGVAPGAKLMPVRIADSLG----YAYWSDIAQAITWAADNGADVISNSWGG 107 (242)
T ss_pred CCCHHHHHHHHHhccCCC--------ceeEeECCCCEEEEEEEECCCC----CccHHHHHHHHHHHHHCCCeEEEeccCC
Confidence 999999999999986322 2348999999999999998765 4788899999999999999999999998
Q ss_pred CCCCCCCchhhHHHHHHHHHHh-cCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecc
Q 044682 301 PSHKNTEYFKDAIAIGSFHAMM-HGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGP 379 (755)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~a~~-~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~p 379 (755)
... .......+..++..+.+ +|+++|+||||+|......+...+++|+||+++.+
T Consensus 108 ~~~--~~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------- 163 (242)
T cd07498 108 SDS--TESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------- 163 (242)
T ss_pred CCC--CchHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------
Confidence 742 23445667777778888 99999999999998776667788999999997643
Q ss_pred eeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHH
Q 044682 380 LTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQ 459 (755)
Q Consensus 380 lv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 459 (755)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCC
Q 044682 460 SIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPF 539 (755)
Q Consensus 460 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 539 (755)
+.+++||++||.. |++|||.++.+....... ..+...+.|
T Consensus 164 ----------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~----~~~~~~~~~ 203 (242)
T cd07498 164 ----------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS----AGDYPGGGY 203 (242)
T ss_pred ----------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc----cccCCCCce
Confidence 4578999999987 999999999887544211 111223578
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044682 540 NACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578 (755)
Q Consensus 540 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 578 (755)
..++|||||||+|||++|||+|++|+|++.|||++|++|
T Consensus 204 ~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 204 GSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 899999999999999999999999999999999999976
No 26
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-41 Score=358.28 Aligned_cols=207 Identities=27% Similarity=0.357 Sum_probs=167.7
Q ss_pred CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhh--------
Q 044682 216 TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAI-------- 287 (755)
Q Consensus 216 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~-------- 287 (755)
...+..+|||||||||+|...++ ..+.||||+|+|+.+|+++..+ ...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~~~~-----~~~~~i~~a~~~a~~~~~~~~~ 132 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLGKCG-----GTLSDIVDGMRWAAGLPVPGVP 132 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEecCCC-----CcHHHHHHHHHHHhccCcCCCc
Confidence 44568899999999999986432 2248999999999999998766 57889999999998
Q ss_pred --hCCCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC-CccccCCCceEEeccccCCceeEEEE
Q 044682 288 --HDGVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP-DTVVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 288 --~~gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
.++++|||||||.... . ...+..++..+.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 133 ~~~~~~~Iin~S~G~~~~----~-~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------- 200 (285)
T cd07496 133 VNPNPAKVINLSLGGDGA----C-SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------- 200 (285)
T ss_pred ccCCCCeEEEeCCCCCCC----C-CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-------
Confidence 4678999999998741 1 44566677788899999999999999775 4455677899999987643
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCC
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEA 524 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~ 524 (755)
+.++.||++|+.. ||+|||++|.++....
T Consensus 201 -------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~ 229 (285)
T cd07496 201 -------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGD 229 (285)
T ss_pred -------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCC
Confidence 4678899999987 9999999999887653
Q ss_pred CCCC--CCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044682 525 VAPS--KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578 (755)
Q Consensus 525 ~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 578 (755)
.... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 230 GYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2110 00111223578899999999999999999999999999999999999986
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-41 Score=360.48 Aligned_cols=268 Identities=28% Similarity=0.320 Sum_probs=186.5
Q ss_pred cCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCC
Q 044682 133 NKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTP 212 (755)
Q Consensus 133 ~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~ 212 (755)
+.+++|+||+|||||+|||++||+|.+. .+....|.+
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~--------------------------~~~~~~~~~----------------- 38 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGR--------------------------DITTKSFVG----------------- 38 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCC--------------------------cccCcccCC-----------------
Confidence 3578999999999999999999999753 111112221
Q ss_pred CCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCc
Q 044682 213 EHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVD 292 (755)
Q Consensus 213 ~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvd 292 (755)
.....|..||||||||||+|+..+ +...||||+|+|+.+|++.... .+...++++||+||++.|++
T Consensus 39 -~~~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~----~~~~~~i~~ai~~a~~~g~~ 104 (297)
T cd07480 39 -GEDVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDG----GGGDGGILAGIQWAVANGAD 104 (297)
T ss_pred -CCCCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCC----CCcHHHHHHHHHHHHHcCCC
Confidence 112467899999999999998643 2347999999999999998765 46777899999999999999
Q ss_pred EEEEcCCCCCCC-------CCCchhhHHHHHHHHH---------------HhcCcEEEEeccCCCCCCCcccc-----CC
Q 044682 293 VLSVSLGEPSHK-------NTEYFKDAIAIGSFHA---------------MMHGILVVAAAGNEGPKPDTVVN-----LA 345 (755)
Q Consensus 293 VIn~SlG~~~~~-------~~~~~~~~~~~~~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~~ 345 (755)
|||+|||..... ........+......+ .++|++||+||||+|........ ..
T Consensus 105 Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~ 184 (297)
T cd07480 105 VISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAAC 184 (297)
T ss_pred EEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCcccc
Confidence 999999985300 0111122222222223 68999999999999865433221 12
Q ss_pred CceEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcC
Q 044682 346 PWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAG 425 (755)
Q Consensus 346 p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~G 425 (755)
+++++|+++...
T Consensus 185 ~~~~~V~~V~~~-------------------------------------------------------------------- 196 (297)
T cd07480 185 PSAMGVAAVGAL-------------------------------------------------------------------- 196 (297)
T ss_pred ccccEEEEECCC--------------------------------------------------------------------
Confidence 344444443321
Q ss_pred ccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCC
Q 044682 426 AAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNI 505 (755)
Q Consensus 426 a~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~ 505 (755)
+....|+++.+ ...
T Consensus 197 --------------------------------------------------------------~~~~~~~~~~~----~~~ 210 (297)
T cd07480 197 --------------------------------------------------------------GRTGNFSAVAN----FSN 210 (297)
T ss_pred --------------------------------------------------------------CCCCCccccCC----CCC
Confidence 11122333322 223
Q ss_pred CCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC
Q 044682 506 IKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHT 585 (755)
Q Consensus 506 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~ 585 (755)
.||||+|||.+|+++.+. ..|..++|||||||+|||++|||+|++|.+++.+++.+|+.........
T Consensus 211 ~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~ 277 (297)
T cd07480 211 GEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT 277 (297)
T ss_pred CceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC
Confidence 578999999999998876 3899999999999999999999999999999888888877432221000
Q ss_pred CCCcccCCCCCCCCCCcCCCCccCcc
Q 044682 586 GKNPITDYDGLKATPFEYGAGHVNPN 611 (755)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~G~G~vd~~ 611 (755)
.........++|+|++++.
T Consensus 278 -------~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 278 -------QFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred -------CCCCCCChhhcCCceeecC
Confidence 0011235678999999875
No 28
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8e-41 Score=351.61 Aligned_cols=246 Identities=23% Similarity=0.241 Sum_probs=177.7
Q ss_pred ccccCC-CCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 130 SAWNKG-RFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 130 ~~~~~~-~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
.+|+.. ..|+||+|+|||+|||.+||+|.+.... . ..
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~---~~------------- 43 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--------------------------L---IS------------- 43 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--------------------------c---cC-------------
Confidence 789874 4599999999999999999999753100 0 00
Q ss_pred CCCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh
Q 044682 209 YPTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH 288 (755)
Q Consensus 209 ~~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~ 288 (755)
...+.|+.+|||||||||+|..+ + +| +.||||+|+|+.+|++. .++++++|.+|++
T Consensus 44 -----~~~~~d~~gHGT~VAGiIaa~~n-~---~G-----~~GvAp~a~l~~i~v~~----------~~~~~~ai~~A~~ 99 (277)
T cd04843 44 -----GLTDQADSDHGTAVLGIIVAKDN-G---IG-----VTGIAHGAQAAVVSSTR----------VSNTADAILDAAD 99 (277)
T ss_pred -----CCCCCCCCCCcchhheeeeeecC-C---Cc-----eeeeccCCEEEEEEecC----------CCCHHHHHHHHHh
Confidence 01245788999999999999731 1 12 48999999999999975 1234455555555
Q ss_pred ----CCCcEEEEcCCCCCCCCCC---chhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccc-------------cCCCce
Q 044682 289 ----DGVDVLSVSLGEPSHKNTE---YFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVV-------------NLAPWL 348 (755)
Q Consensus 289 ----~gvdVIn~SlG~~~~~~~~---~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~-------------~~~p~v 348 (755)
.++.+||||||........ .....+..++.++.++|+++|+||||++....... ...|++
T Consensus 100 ~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~v 179 (277)
T cd04843 100 YLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGA 179 (277)
T ss_pred ccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCe
Confidence 4677899999986321111 12344556777888999999999999986532111 123579
Q ss_pred EEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccE
Q 044682 349 LTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAG 428 (755)
Q Consensus 349 itVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g 428 (755)
|+|||++.+.
T Consensus 180 I~VgA~~~~~---------------------------------------------------------------------- 189 (277)
T cd04843 180 IMVGAGSSTT---------------------------------------------------------------------- 189 (277)
T ss_pred EEEEeccCCC----------------------------------------------------------------------
Confidence 9999876431
Q ss_pred EEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCC
Q 044682 429 LILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKP 508 (755)
Q Consensus 429 ~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KP 508 (755)
...++.||++||..
T Consensus 190 ----------------------------------------------------------~~~~~~fSn~G~~v-------- 203 (277)
T cd04843 190 ----------------------------------------------------------GHTRLAFSNYGSRV-------- 203 (277)
T ss_pred ----------------------------------------------------------CCccccccCCCCcc--------
Confidence 02378999999987
Q ss_pred ceeeCCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 044682 509 DITAPGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKT----L-HPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 509 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~~sp~~ik~~L~~TA~ 580 (755)
||+|||++|+++.+..... ......+.|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 204 di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 204 DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 9999999999998763211 0111122457899999999999999999975 3 499999999999999973
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=2.7e-40 Score=340.26 Aligned_cols=227 Identities=32% Similarity=0.481 Sum_probs=187.7
Q ss_pred ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCC
Q 044682 140 DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARD 219 (755)
Q Consensus 140 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 219 (755)
||+|||||+||+++||+|.+. ++....|... +.....|
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~----------------~~~~~~~ 38 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGD----------------DNNDYQD 38 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCC----------------CCCCCCC
Confidence 799999999999999999753 2222222221 0024567
Q ss_pred CCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCC
Q 044682 220 LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLG 299 (755)
Q Consensus 220 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 299 (755)
..+|||||||+|++..... .+.|+||+|+|+.+|+++..+ .+...+++++++++++.|++|||+|||
T Consensus 39 ~~~HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~----~~~~~~l~~ai~~a~~~~~~Vin~S~g 105 (229)
T cd07477 39 GNGHGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDG----SGTYSDIIAGIEWAIENGMDIINMSLG 105 (229)
T ss_pred CCCCHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCC----CcCHHHHHHHHHHHHHCCCCEEEECCc
Confidence 8899999999999986321 358999999999999998776 467789999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCcc--ccCCCceEEeccccCCceeEEEEEeCCccEEEEEee
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTV--VNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQ 377 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~ 377 (755)
.... ...+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 106 ~~~~------~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~-------------------- 159 (229)
T cd07477 106 GPSD------SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN-------------------- 159 (229)
T ss_pred cCCC------CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC--------------------
Confidence 8642 23445556688899999999999999776554 6678999999998653
Q ss_pred cceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhh
Q 044682 378 GPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDD 457 (755)
Q Consensus 378 ~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 457 (755)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCc
Q 044682 458 AQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRI 537 (755)
Q Consensus 458 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 537 (755)
+.++.||++|+.. |++|||.+|+++++. .
T Consensus 160 ------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~ 188 (229)
T cd07477 160 ------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------N 188 (229)
T ss_pred ------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------C
Confidence 4567899999976 999999999999876 3
Q ss_pred CCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044682 538 PFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578 (755)
Q Consensus 538 ~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 578 (755)
.|..++|||||||+|||++|||+|++|.++|.+||++|++|
T Consensus 189 ~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
No 30
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-40 Score=344.73 Aligned_cols=250 Identities=28% Similarity=0.359 Sum_probs=191.1
Q ss_pred CceEEEEEccCCCCCCcCccCCCCCCCCCcccce---eecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCC
Q 044682 139 EDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGI---CQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHS 215 (755)
Q Consensus 139 ~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~---~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~ 215 (755)
+||+|||||||||++||+|.+. .|... +..+. ..+. ..|.+..... +......
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~---~~~~------~~~~~~~~~~--------~~~~~~~ 57 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGI---DDDG------NGYVDDIYGW--------NFVNNDN 57 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCc---ccCC------CCcccCCCcc--------cccCCCC
Confidence 6899999999999999999864 23211 11110 0000 0111110000 0001234
Q ss_pred CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEE
Q 044682 216 TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLS 295 (755)
Q Consensus 216 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn 295 (755)
++.|..+|||||||||+|...++. .+.|+||+|+|+.+|++...+ .++..+++++++++++.+++|||
T Consensus 58 ~~~d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~----~~~~~~~~~a~~~a~~~~~~vin 125 (259)
T cd07473 58 DPMDDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADG----SGTTSDAIKAIDYAVDMGAKIIN 125 (259)
T ss_pred CCCCCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCC----CcCHHHHHHHHHHHHHCCCeEEE
Confidence 567889999999999999864332 248999999999999998776 47889999999999999999999
Q ss_pred EcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCC---Ccccc--CCCceEEeccccCCceeEEEEEeCCcc
Q 044682 296 VSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKP---DTVVN--LAPWLLTVGASTMDREFTSYVTLGDEQ 370 (755)
Q Consensus 296 ~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~---~~~~~--~~p~vitVgA~~~~~~~~~~~~~g~~~ 370 (755)
+|||.... ...+..++..+.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 126 ~S~G~~~~------~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~------------- 186 (259)
T cd07473 126 NSWGGGGP------SQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN------------- 186 (259)
T ss_pred eCCCCCCC------CHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-------------
Confidence 99998742 45566677788899999999999998762 22332 35789999987643
Q ss_pred EEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccE
Q 044682 371 IFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPT 450 (755)
Q Consensus 371 ~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 450 (755)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCC
Q 044682 451 SLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKS 530 (755)
Q Consensus 451 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 530 (755)
+.++.||++||. +||+.|||.++++..+.
T Consensus 187 -------------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~------- 215 (259)
T cd07473 187 -------------------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG------- 215 (259)
T ss_pred -------------------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC-------
Confidence 456679999985 35999999999997654
Q ss_pred CCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 531 PSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 531 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
..|..++|||||||+|||++||++|++|.+++.+||++|++||+
T Consensus 216 ------~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 ------GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ------CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 37899999999999999999999999999999999999999984
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=4.9e-41 Score=356.79 Aligned_cols=277 Identities=34% Similarity=0.481 Sum_probs=209.1
Q ss_pred EEEEEccCCCCCCcCcc-CCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCCC
Q 044682 142 IIGVIDSGVWPESKSFS-DEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARDL 220 (755)
Q Consensus 142 ~VgVIDtGid~~Hp~f~-~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 220 (755)
+|||||||||++||+|. .. + ...++.+.+.|.++. .......|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~--------------------~~~~~~~~~~~~~~~--------------~~~~~~~~~ 45 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F--------------------IWSKVPGGYNFVDGN--------------PNPSPSDDD 45 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E--------------------EEEEEEEEEETTTTB--------------STTTSSSTS
T ss_pred CEEEEcCCcCCCChhHccCC-c--------------------ccccccceeeccCCC--------------CCcCccccC
Confidence 69999999999999997 32 0 011222333443321 013356678
Q ss_pred CCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhh-hCCCcEEEEcCC
Q 044682 221 DGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAI-HDGVDVLSVSLG 299 (755)
Q Consensus 221 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~-~~gvdVIn~SlG 299 (755)
.+|||||||||+|.. . .. .....|+||+|+|+.+|++...+ ....++++++++++ +.+++|||+|||
T Consensus 46 ~~HGT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~~~~-----~~~~~~~~ai~~~~~~~~~~Vin~S~G 113 (282)
T PF00082_consen 46 NGHGTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFDNSG-----GTSSDLIEAIEYAVKNDGVDVINLSFG 113 (282)
T ss_dssp SSHHHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSSTTS-----EEHHHHHHHHHHHHHHTTSSEEEECEE
T ss_pred CCccchhhhhccccc-c-cc-----ccccccccccccccccccccccc-----cccccccchhhhhhhccCCcccccccc
Confidence 899999999999986 2 11 12348999999999999976654 67788999999999 899999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCc---cccCCCceEEeccccCCceeEEEEEeCCccEEEEEe
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDT---VVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIM 376 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l 376 (755)
.............+..+...+.++|+++|+||||+|..... .+...+++|+||+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~------------------- 174 (282)
T PF00082_consen 114 SNSGPPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN------------------- 174 (282)
T ss_dssp BEESSSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT-------------------
T ss_pred ccccccccccccccccccccccccCcceeeccccccccccccccccccccccccccccccc-------------------
Confidence 82100023345556667778999999999999999876653 33446889999987642
Q ss_pred ecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHh
Q 044682 377 QGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFD 456 (755)
Q Consensus 377 ~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 456 (755)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCC
Q 044682 457 DAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRR 536 (755)
Q Consensus 457 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 536 (755)
+.++.||++|+.. .++++||||+|||.+|+++++....
T Consensus 175 -------------------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~~---------- 212 (282)
T PF00082_consen 175 -------------------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSDR---------- 212 (282)
T ss_dssp -------------------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTES----------
T ss_pred -------------------------------ccccccccccccc-ccccccccccccccccccccccccc----------
Confidence 3568899997653 2789999999999999998876321
Q ss_pred cCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCccccCC
Q 044682 537 IPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSAMD 615 (755)
Q Consensus 537 ~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 615 (755)
..|...+|||||||+|||++|||+|++|++++.+||.+|++||+++.... .......||||+||+.+|++
T Consensus 213 ~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~---------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 213 GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN---------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT---------SSSSHHHHTTSBE-HHHHHH
T ss_pred ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC---------CCCCCCCccCChhCHHHHhC
Confidence 25788999999999999999999999999999999999999999876211 12356688999999999874
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-40 Score=341.32 Aligned_cols=223 Identities=19% Similarity=0.201 Sum_probs=170.5
Q ss_pred CCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCC
Q 044682 138 GEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTA 217 (755)
Q Consensus 138 G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 217 (755)
+++|+|||||||||++||+|.+. +++.+.|....... .......
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~~~----------~~~~~~~ 45 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEGDG----------NKVSPYY 45 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCCCc----------ccCCCCC
Confidence 78999999999999999999752 22233333211000 0001123
Q ss_pred CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCC--CCCCChhHHHHhhhhhhhCCCcEEE
Q 044682 218 RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQ--PLDCRDSDILSAFDDAIHDGVDVLS 295 (755)
Q Consensus 218 ~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~--~~~~~~~~i~~ai~~a~~~gvdVIn 295 (755)
.|..||||||||||+ |+||+|+|+.+|+++..+.. ...++...+++||+||+++|+||||
T Consensus 46 ~d~~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn 107 (247)
T cd07491 46 VSADGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIIS 107 (247)
T ss_pred CCCCCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEE
Confidence 578999999999996 56999999999999865421 0135678899999999999999999
Q ss_pred EcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC-cc--ccCCCceEEeccccCCceeEEEEEeCCccEE
Q 044682 296 VSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD-TV--VNLAPWLLTVGASTMDREFTSYVTLGDEQIF 372 (755)
Q Consensus 296 ~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~ 372 (755)
||||.............+..++.+|.++|++||+||||+|.... .+ +...|++|+|||++.+
T Consensus 108 ~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~--------------- 172 (247)
T cd07491 108 MSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED--------------- 172 (247)
T ss_pred eeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC---------------
Confidence 99998742111123566778888999999999999999997754 33 3356899999998754
Q ss_pred EEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEE
Q 044682 373 KEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSL 452 (755)
Q Consensus 373 ~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 452 (755)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCC
Q 044682 453 VEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPS 532 (755)
Q Consensus 453 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 532 (755)
+.++.||++|+.. |++|||++|+++.+..
T Consensus 173 -----------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~-------- 201 (247)
T cd07491 173 -----------------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP-------- 201 (247)
T ss_pred -----------------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC--------
Confidence 4567899999987 9999999999987521
Q ss_pred CCCCcCCeeeccccchhhhHHHHHHHHHhh
Q 044682 533 DDRRIPFNACFGTSMSTPHISGIAGLLKTL 562 (755)
Q Consensus 533 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 562 (755)
..+.|..++|||||||||||++|||++.
T Consensus 202 --~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 202 --LSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred --CCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 1147999999999999999999999985
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.9e-39 Score=346.90 Aligned_cols=211 Identities=28% Similarity=0.324 Sum_probs=159.0
Q ss_pred CCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEE
Q 044682 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVL 294 (755)
Q Consensus 215 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 294 (755)
....|..||||||||+|+|+.. ..||||+|+|+.+|+++..+ .....+++++|++|++++++||
T Consensus 47 ~~~~d~~gHGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~----~~~~~~~~~ai~~a~~~~~~vi 110 (294)
T cd07482 47 NDIVDKLGHGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCG----SAESSWIIKAIIDAADDGVDVI 110 (294)
T ss_pred CcCCCCCCcHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCC----CcCHHHHHHHHHHHHHCCCCEE
Confidence 3456789999999999998742 25999999999999998776 3578899999999999999999
Q ss_pred EEcCCCCCCCCC-----CchhhHHHHHHHHHHhcCcEEEEeccCCCCCCC----------------------ccccCCCc
Q 044682 295 SVSLGEPSHKNT-----EYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPD----------------------TVVNLAPW 347 (755)
Q Consensus 295 n~SlG~~~~~~~-----~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~----------------------~~~~~~p~ 347 (755)
|+|||....... ......+..++..+.++|++||+||||+|.... ..+...++
T Consensus 111 n~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 190 (294)
T cd07482 111 NLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPN 190 (294)
T ss_pred EeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCc
Confidence 999998632111 112244566667788999999999999996541 12224567
Q ss_pred eEEeccccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCcc
Q 044682 348 LLTVGASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAA 427 (755)
Q Consensus 348 vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~ 427 (755)
+|+|||++.+
T Consensus 191 vi~Vga~~~~---------------------------------------------------------------------- 200 (294)
T cd07482 191 VITVSATDNN---------------------------------------------------------------------- 200 (294)
T ss_pred eEEEEeeCCC----------------------------------------------------------------------
Confidence 7777776542
Q ss_pred EEEEecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCC
Q 044682 428 GLILVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIK 507 (755)
Q Consensus 428 g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~K 507 (755)
+.++.||++|+..
T Consensus 201 ------------------------------------------------------------~~~~~~S~~g~~~------- 213 (294)
T cd07482 201 ------------------------------------------------------------GNLSSFSNYGNSR------- 213 (294)
T ss_pred ------------------------------------------------------------CCcCccccCCCCc-------
Confidence 4667899998754
Q ss_pred CceeeCCCeEEeeecCCCCC---CC------CCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCH-HHHHHHHHh
Q 044682 508 PDITAPGVEIIAAYSEAVAP---SK------SPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP-AAIKSAIMT 577 (755)
Q Consensus 508 PDI~APG~~I~sa~~~~~~~---~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp-~~ik~~L~~ 577 (755)
+|++|||+++.......... .. .......+.|..++|||||||+|||++|||+|++|.+++ .|||++|++
T Consensus 214 ~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~ 293 (294)
T cd07482 214 IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYN 293 (294)
T ss_pred ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhh
Confidence 49999999985322111000 00 001123457899999999999999999999999999999 999999998
Q ss_pred c
Q 044682 578 T 578 (755)
Q Consensus 578 T 578 (755)
|
T Consensus 294 T 294 (294)
T cd07482 294 T 294 (294)
T ss_pred C
Confidence 6
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.6e-39 Score=331.33 Aligned_cols=222 Identities=24% Similarity=0.269 Sum_probs=174.4
Q ss_pred ceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCCCCC
Q 044682 140 DVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHSTARD 219 (755)
Q Consensus 140 gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 219 (755)
||+|||||||||++||+|.+.- ...+.+..+. ...+.....|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~--------------------------~~~~~~~~~~------------~~~~~~~~~d 42 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLA--------------------------LDGEVTIDLE------------IIVVSAEGGD 42 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccc--------------------------cccccccccc------------cccCCCCCCC
Confidence 7999999999999999998531 1111111000 0001235567
Q ss_pred CCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCC
Q 044682 220 LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLG 299 (755)
Q Consensus 220 ~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG 299 (755)
..||||||||||++. +|+++|+.+|+++..+ .+...++++||+|++++|++|||||||
T Consensus 43 ~~gHGT~vAgiia~~------------------~p~~~i~~~~v~~~~~----~~~~~~~~~ai~~a~~~~v~Vin~S~G 100 (222)
T cd07492 43 KDGHGTACAGIIKKY------------------APEAEIGSIKILGEDG----RCNSFVLEKALRACVENDIRIVNLSLG 100 (222)
T ss_pred CCCcHHHHHHHHHcc------------------CCCCeEEEEEEeCCCC----CcCHHHHHHHHHHHHHCCCCEEEeCCC
Confidence 899999999999864 6999999999998776 578899999999999999999999999
Q ss_pred CCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCCceEEeccccCCceeEEEEEeCCccEEEEEeecc
Q 044682 300 EPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAPWLLTVGASTMDREFTSYVTLGDEQIFKEIMQGP 379 (755)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~~p 379 (755)
... ......+..++.++.++|+++|+||||++..... +...+++|+|++.+.+.
T Consensus 101 ~~~----~~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~-Pa~~~~vi~V~~~~~~~--------------------- 154 (222)
T cd07492 101 GPG----DRDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTP-PASFPNVIGVKSDTADD--------------------- 154 (222)
T ss_pred CCC----CCcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC-CccCCceEEEEecCCCC---------------------
Confidence 874 2223455666778888999999999999865433 55678999999865321
Q ss_pred eeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhhHH
Q 044682 380 LTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDDAQ 459 (755)
Q Consensus 380 lv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 459 (755)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCcCC
Q 044682 460 SIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRIPF 539 (755)
Q Consensus 460 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 539 (755)
.. +.+++. +|++|||.+|+++.+. +.|
T Consensus 155 -----------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~-------------~~~ 181 (222)
T cd07492 155 -----------------------------PK---SFWYIY--------VEFSADGVDIIAPAPH-------------GRY 181 (222)
T ss_pred -----------------------------Cc---ccccCC--------ceEEeCCCCeEeecCC-------------CCE
Confidence 11 112333 4999999999998876 378
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 540 NACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 540 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 182 ~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 182 LTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred EEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=7.9e-40 Score=350.28 Aligned_cols=250 Identities=21% Similarity=0.218 Sum_probs=180.7
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
..+|+.+++|+||+|+|||||||+.||+|.+.-.. ...+.|....
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~----------- 73 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDND----------- 73 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCC-----------
Confidence 38999999999999999999999999999753110 0111222110
Q ss_pred CCCCCCCCC--CCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhh
Q 044682 209 YPTPEHSTA--RDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDA 286 (755)
Q Consensus 209 ~~~~~~~~~--~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a 286 (755)
....+ .|..||||||||||+|+..+.. ...||||+|+|+.+|++... ........++.++
T Consensus 74 ----~~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~~~------~~~~~~~~~~~~~ 135 (297)
T cd04059 74 ----PDPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLDGD------VTDVVEAESLGLN 135 (297)
T ss_pred ----CCCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecCCc------cccHHHHHHHhcc
Confidence 01122 2788999999999999863221 23899999999999998653 2334555666665
Q ss_pred hhCCCcEEEEcCCCCCCCC-CCchhhHHHHHHHHHHh-----cCcEEEEeccCCCCCCCc----cccCCCceEEeccccC
Q 044682 287 IHDGVDVLSVSLGEPSHKN-TEYFKDAIAIGSFHAMM-----HGILVVAAAGNEGPKPDT----VVNLAPWLLTVGASTM 356 (755)
Q Consensus 287 ~~~gvdVIn~SlG~~~~~~-~~~~~~~~~~~~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~~p~vitVgA~~~ 356 (755)
.+ .++|||||||...... ..........++.++.. +|++||+||||+|..... .....|++|+|||++.
T Consensus 136 ~~-~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~ 214 (297)
T cd04059 136 PD-YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA 214 (297)
T ss_pred cC-CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC
Confidence 54 4599999999763210 01112222333333332 699999999999973222 1235689999998765
Q ss_pred CceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCC
Q 044682 357 DREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 357 ~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
+
T Consensus 215 ~------------------------------------------------------------------------------- 215 (297)
T cd04059 215 N------------------------------------------------------------------------------- 215 (297)
T ss_pred C-------------------------------------------------------------------------------
Confidence 3
Q ss_pred CCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCe
Q 044682 437 LENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVE 516 (755)
Q Consensus 437 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 516 (755)
+.++.||++|+.. +++|||..
T Consensus 216 ---------------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~ 236 (297)
T cd04059 216 ---------------------------------------------------GVRASYSEVGSSV--------LASAPSGG 236 (297)
T ss_pred ---------------------------------------------------CCCcCCCCCCCcE--------EEEecCCC
Confidence 4678899999988 99999987
Q ss_pred -------EEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 517 -------IIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 517 -------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
|+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++|++||+
T Consensus 237 ~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 237 SGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66665441 0136788999999999999999999999999999999999999984
No 36
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-39 Score=340.81 Aligned_cols=364 Identities=23% Similarity=0.330 Sum_probs=273.9
Q ss_pred CceEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCccccccc------EEEEecceeeeEEEEeCH-----HHHHH
Q 044682 23 KKSYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSVKKARDS------ISCSYGRHINGFAAILEE-----EHAQQ 91 (755)
Q Consensus 23 ~~~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------i~~~y~~~~~g~s~~l~~-----~~~~~ 91 (755)
...|||.|+..... ..|..++++.+...+-..-+ ....|-..|.-+-++-.. -++++
T Consensus 49 e~EyIv~F~~y~~A------------k~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ier 116 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKPA------------KDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIER 116 (1033)
T ss_pred cceeEEEecccccc------------hHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeee
Confidence 35799999987654 45667777766533322222 234555566666554432 35799
Q ss_pred HhCCCCeEEEEeCcccccccC------------CCcccc-CC-------------ccc-------cc----ccccccccC
Q 044682 92 LAKHPEVLSIFLDEGRKVQTT------------RSWDFL-GL-------------EKD-------NV----ISQNSAWNK 134 (755)
Q Consensus 92 L~~~p~V~~V~~~~~~~~~~~------------~s~~~~-g~-------------~~~-------~~----~~~~~~~~~ 134 (755)
|..+|.|+.|.|.+.+..... +.-.++ |. ... .| ...+-+|+.
T Consensus 117 Le~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~ 196 (1033)
T KOG4266|consen 117 LEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKK 196 (1033)
T ss_pred hhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhc
Confidence 999999999999887632110 000000 00 000 01 223689999
Q ss_pred CCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCC
Q 044682 135 GRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEH 214 (755)
Q Consensus 135 ~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~ 214 (755)
|++|++|+|||.|||+.-+||.|+.- ....+.++ .
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnv---------------------------KERTNWTN------------------E 231 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNV---------------------------KERTNWTN------------------E 231 (1033)
T ss_pred cccCCceEEEEeecccccCCccccch---------------------------hhhcCCcC------------------c
Confidence 99999999999999999999999741 00001110 1
Q ss_pred CCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEE
Q 044682 215 STARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVL 294 (755)
Q Consensus 215 ~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVI 294 (755)
..-.|.-||||.|||+|||.. ...|.||+++|+++|||.+.. -.+++.++.|+.||+....||+
T Consensus 232 ~tLdD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~q----VSYTSWFLDAFNYAI~~kidvL 295 (1033)
T KOG4266|consen 232 DTLDDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDAQ----VSYTSWFLDAFNYAIATKIDVL 295 (1033)
T ss_pred cccccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccce----eehhhHHHHHHHHHHhhhcceE
Confidence 245578999999999999884 247889999999999998876 5789999999999999999999
Q ss_pred EEcCCCCCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccCCC--ceEEeccccCCceeEEEEEeCCccEE
Q 044682 295 SVSLGEPSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNLAP--WLLTVGASTMDREFTSYVTLGDEQIF 372 (755)
Q Consensus 295 n~SlG~~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~~p--~vitVgA~~~~~~~~~~~~~g~~~~~ 372 (755)
|+|+|++. +.+.++-.-+......+|++|.|+||+||-.++..+++. .||.||..+-
T Consensus 296 NLSIGGPD-----fmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf---------------- 354 (1033)
T KOG4266|consen 296 NLSIGGPD-----FMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF---------------- 354 (1033)
T ss_pred eeccCCcc-----cccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc----------------
Confidence 99999974 556666666667889999999999999999999988764 6788886543
Q ss_pred EEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEE
Q 044682 373 KEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSL 452 (755)
Q Consensus 373 ~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~ 452 (755)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCC----CCCCCCCceeeCCCeEEeeecCCCCCC
Q 044682 453 VEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTI----NPNIIKPDITAPGVEIIAAYSEAVAPS 528 (755)
Q Consensus 453 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~----~~~~~KPDI~APG~~I~sa~~~~~~~~ 528 (755)
.+.++.|||||-+.+ ..||+||||++-|.+|......
T Consensus 355 ----------------------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~----- 395 (1033)
T KOG4266|consen 355 ----------------------------------DDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS----- 395 (1033)
T ss_pred ----------------------------------cchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-----
Confidence 268999999997654 3689999999999999876554
Q ss_pred CCCCCCCCcCCeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCC
Q 044682 529 KSPSDDRRIPFNACFGTSMSTPHISGIAGLLKT----LHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYG 604 (755)
Q Consensus 529 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G 604 (755)
.+...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++... -++||
T Consensus 396 --------~GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N-------------MfEQG 454 (1033)
T KOG4266|consen 396 --------TGCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN-------------MFEQG 454 (1033)
T ss_pred --------ccchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc-------------hhhcc
Confidence 3788999999999999999999976 3345689999999999999987664 68999
Q ss_pred CCccCccccCCCcccc
Q 044682 605 AGHVNPNSAMDPGLVY 620 (755)
Q Consensus 605 ~G~vd~~~Al~~~lvy 620 (755)
+|++|+.++.+-=+-|
T Consensus 455 aGkldLL~syqiL~SY 470 (1033)
T KOG4266|consen 455 AGKLDLLESYQILKSY 470 (1033)
T ss_pred CcchhHHHHHHHHHhc
Confidence 9999998887733333
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=2.7e-38 Score=332.67 Aligned_cols=247 Identities=27% Similarity=0.340 Sum_probs=188.5
Q ss_pred CCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCCCCCCCCC
Q 044682 137 FGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFYPTPEHST 216 (755)
Q Consensus 137 ~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~~~~~~~~ 216 (755)
+|+||+|+|||+||+++||+|.+.... ...+.... ......
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--------------------------~~~~~~~~-------------~~~~~~ 41 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--------------------------ASYYVAVN-------------DAGYAS 41 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--------------------------cccccccc-------------cccCCC
Confidence 599999999999999999999864110 00000000 000124
Q ss_pred CCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEE
Q 044682 217 ARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSV 296 (755)
Q Consensus 217 ~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~ 296 (755)
..|..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++..+. .+....+.++++++++.+++|||+
T Consensus 42 ~~~~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Vin~ 109 (267)
T cd04848 42 NGDGDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGS---TFSDADIAAAYDFLAASGVRIINN 109 (267)
T ss_pred CCCCCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCc---ccchHHHHHHHHHHHhCCCeEEEc
Confidence 457889999999999998633 33589999999999999987541 266788999999999999999999
Q ss_pred cCCCCCCCCCC---------chhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccc---------cCCCceEEeccccCCc
Q 044682 297 SLGEPSHKNTE---------YFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVV---------NLAPWLLTVGASTMDR 358 (755)
Q Consensus 297 SlG~~~~~~~~---------~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~~p~vitVgA~~~~~ 358 (755)
|||........ .....+......+.++|+++|+||||++....... ...+++|+||+++.+.
T Consensus 110 S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~ 189 (267)
T cd04848 110 SWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG 189 (267)
T ss_pred cCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC
Confidence 99987421110 14455666777889999999999999986543332 2457899999987642
Q ss_pred eeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCC
Q 044682 359 EFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLE 438 (755)
Q Consensus 359 ~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 438 (755)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCcccc--ccCCCCCCCCCCCCCCceeeCCCe
Q 044682 439 NESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTF--FSSRGPSTINPNIIKPDITAPGVE 516 (755)
Q Consensus 439 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~Gp~~~~~~~~KPDI~APG~~ 516 (755)
.... ||++|+.. ..++++|||.+
T Consensus 190 --------------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~ 214 (267)
T cd04848 190 --------------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGEN 214 (267)
T ss_pred --------------------------------------------------Ccccccccccchhh-----hhheeecCcCc
Confidence 2233 48888643 23479999999
Q ss_pred EEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044682 517 IIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTAT 580 (755)
Q Consensus 517 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~ 580 (755)
|+++.+... ..|..++|||||||+|||++||++|++|.++++|||++|++||+
T Consensus 215 i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 215 IYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred eeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 999887311 37889999999999999999999999999999999999999985
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.9e-33 Score=285.43 Aligned_cols=196 Identities=22% Similarity=0.220 Sum_probs=142.2
Q ss_pred CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhh--hhCCCcE
Q 044682 216 TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDA--IHDGVDV 293 (755)
Q Consensus 216 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a--~~~gvdV 293 (755)
...|.+||||||||||||. .|++|+++|+..++.. .....+.++++|+ .+.+++|
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~--------~~~~~~~~~i~~~~~~~~gv~V 88 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI--------KSNNGQWQECLEAQQNGNNVKI 88 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC--------CCCCccHHHHHHHHHhcCCceE
Confidence 3457999999999999997 3567999998765522 2233456777787 6689999
Q ss_pred EEEcCCCCCCCCC---CchhhHHHHHHHHHHhc-CcEEEEeccCCCCCCCc-----cccCCCceEEeccccCCceeEEEE
Q 044682 294 LSVSLGEPSHKNT---EYFKDAIAIGSFHAMMH-GILVVAAAGNEGPKPDT-----VVNLAPWLLTVGASTMDREFTSYV 364 (755)
Q Consensus 294 In~SlG~~~~~~~---~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~~-----~~~~~p~vitVgA~~~~~~~~~~~ 364 (755)
||||||....... ....+.+..++..+.++ |+++|+||||+|..... .+..++++|+|||++.....
T Consensus 89 INmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~---- 164 (247)
T cd07488 89 INHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR---- 164 (247)
T ss_pred EEeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc----
Confidence 9999998742110 01223455566666565 99999999999975322 23356899999998754210
Q ss_pred EeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCC
Q 044682 365 TLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPL 444 (755)
Q Consensus 365 ~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~ 444 (755)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCC--CCCCCCCCCCCceeeCCCeEEeeec
Q 044682 445 PYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRG--PSTINPNIIKPDITAPGVEIIAAYS 522 (755)
Q Consensus 445 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~G--p~~~~~~~~KPDI~APG~~I~sa~~ 522 (755)
...+.||++| |+. ++..||||+|||++|++ +
T Consensus 165 -------------------------------------------~~~s~~sn~~~~~~~--~~~~~~di~APG~~i~s--~ 197 (247)
T cd07488 165 -------------------------------------------FFASDVSNAGSEINS--YGRRKVLIVAPGSNYNL--P 197 (247)
T ss_pred -------------------------------------------ceecccccccCCCCC--CCCceeEEEEeeeeEEC--C
Confidence 1234566644 443 78899999999999998 2
Q ss_pred CCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 044682 523 EAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSP------AAIKSAIMTT 578 (755)
Q Consensus 523 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp------~~ik~~L~~T 578 (755)
. +.|..++|||||||||||++|||++++|++.+ .++|.+|++|
T Consensus 198 ~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 198 D-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred C-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 2 26889999999999999999999999887764 4567766665
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.5e-32 Score=303.42 Aligned_cols=241 Identities=26% Similarity=0.321 Sum_probs=186.7
Q ss_pred CCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCC
Q 044682 221 DGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGE 300 (755)
Q Consensus 221 ~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~ 300 (755)
.-|||||||||+|+..+. ....||||+|+|+++++.+..-+. .-+...+.+|+..++++.+||||||+|.
T Consensus 310 g~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgs--METgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGS--METGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred CCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccc--cccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 459999999999998543 235899999999999997654322 2455678999999999999999999999
Q ss_pred CCCCCCCchhhHHHHHHHHHHhcCcEEEEeccCCCCCCCccccC---CCceEEeccccCCceeEEEEEeCCccEEEEEee
Q 044682 301 PSHKNTEYFKDAIAIGSFHAMMHGILVVAAAGNEGPKPDTVVNL---APWLLTVGASTMDREFTSYVTLGDEQIFKEIMQ 377 (755)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---~p~vitVgA~~~~~~~~~~~~~g~~~~~~g~l~ 377 (755)
..+ .+.....++..-..+.++|+++|+||||.||...+++.+ ...+|.|||.-......+.
T Consensus 380 ~a~--~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~-------------- 443 (1304)
T KOG1114|consen 380 DAH--LPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE-------------- 443 (1304)
T ss_pred cCC--CCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh--------------
Confidence 864 444555566666667789999999999999998887763 3589999985332110000
Q ss_pred cceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccEEEeeHhh
Q 044682 378 GPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPTSLVEFDD 457 (755)
Q Consensus 378 ~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 457 (755)
T Consensus 444 -------------------------------------------------------------------------------- 443 (1304)
T KOG1114|consen 444 -------------------------------------------------------------------------------- 443 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCCCCCCCCCc
Q 044682 458 AQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSKSPSDDRRI 537 (755)
Q Consensus 458 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 537 (755)
.. ...+..+.+..||||||+. ||.+--.|+|||+.|-+- |... -.
T Consensus 444 ----y~------------------~~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----------lq 488 (1304)
T KOG1114|consen 444 ----YS------------------VREPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----------LQ 488 (1304)
T ss_pred ----hh------------------hhccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh----------hh
Confidence 00 0001135678899999998 999999999999998653 2211 02
Q ss_pred CCeeeccccchhhhHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCCCCCcCCCCccCcccc
Q 044682 538 PFNACFGTSMSTPHISGIAGLLKT----LHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKATPFEYGAGHVNPNSA 613 (755)
Q Consensus 538 ~y~~~sGTSmAaP~VAG~aALl~q----~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A 613 (755)
.-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++... +|.||.|++++.+|
T Consensus 489 ~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~id-------------~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 489 NSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDID-------------SFAQGQGMLQVDKA 555 (1304)
T ss_pred hhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCccc-------------hhccCcceeehhHH
Confidence 567899999999999999999865 5678999999999999999987654 79999999999999
Q ss_pred CC
Q 044682 614 MD 615 (755)
Q Consensus 614 l~ 615 (755)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 77
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=6e-31 Score=271.18 Aligned_cols=197 Identities=34% Similarity=0.472 Sum_probs=158.4
Q ss_pred CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhh-hCCCcEE
Q 044682 216 TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAI-HDGVDVL 294 (755)
Q Consensus 216 ~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~-~~gvdVI 294 (755)
...+..+||||||++|++...+. ...|+||+++|+.+|+..... ......+++++++++ ..+++||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~---------~~~g~a~~a~i~~~~~~~~~~----~~~~~~~~~ai~~~~~~~~~~ii 105 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKVLDGDG----SGSSSDIAAAIDYAAADQGADVI 105 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCC---------CCEEeCCCCEEEEEEEecCCC----CcCHHHHHHHHHHHHhccCCCEE
Confidence 45578899999999999986332 127999999999999988765 367889999999999 8999999
Q ss_pred EEcCCCCCCCCCCchhhHHHHHHHHHHhc-CcEEEEeccCCCCCCC---ccccCCCceEEeccccCCceeEEEEEeCCcc
Q 044682 295 SVSLGEPSHKNTEYFKDAIAIGSFHAMMH-GILVVAAAGNEGPKPD---TVVNLAPWLLTVGASTMDREFTSYVTLGDEQ 370 (755)
Q Consensus 295 n~SlG~~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~G~~~~---~~~~~~p~vitVgA~~~~~~~~~~~~~g~~~ 370 (755)
|+|||.... . ....+...+..+.++ |+++|+||||.+.... ..+...+++|+||+++.+.
T Consensus 106 n~S~g~~~~---~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------ 169 (241)
T cd00306 106 NLSLGGPGS---P-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------ 169 (241)
T ss_pred EeCCCCCCC---C-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC------------
Confidence 999998742 1 334455556677777 9999999999997765 4666789999999987542
Q ss_pred EEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCCCCCCCCCCcccE
Q 044682 371 IFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLENESLPLPYHLPT 450 (755)
Q Consensus 371 ~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~~~~~p~ 450 (755)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccc-cccCCCCCCCCCCCCCCceeeCCCeEEeeecCCCCCCC
Q 044682 451 SLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMT-FFSSRGPSTINPNIIKPDITAPGVEIIAAYSEAVAPSK 529 (755)
Q Consensus 451 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 529 (755)
... .++++|+ |||+.|||.++.+....
T Consensus 170 --------------------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~------ 197 (241)
T cd00306 170 --------------------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT------ 197 (241)
T ss_pred --------------------------------------CccCCcCCCCC--------CceEEeCcCCccCcccC------
Confidence 111 4455554 55999999999875111
Q ss_pred CCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044682 530 SPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTT 578 (755)
Q Consensus 530 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~T 578 (755)
....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 198 -----~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 -----GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred -----CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 12488999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.3e-24 Score=241.82 Aligned_cols=249 Identities=30% Similarity=0.422 Sum_probs=188.4
Q ss_pred ccccC--CCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCC
Q 044682 130 SAWNK--GRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSS 207 (755)
Q Consensus 130 ~~~~~--~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~ 207 (755)
..|.. +.+|+||+|+|||+||+..||+|.+... ....|.+.
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~--------------------------~~~~~~~~----------- 173 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV--------------------------AGGDFVDG----------- 173 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhcccc--------------------------cccccccC-----------
Confidence 67777 8999999999999999999999986410 00122221
Q ss_pred CCCCCCCC-CCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecC-CCCCCCCChhHHHHhhhh
Q 044682 208 FYPTPEHS-TARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNV-NGQPLDCRDSDILSAFDD 285 (755)
Q Consensus 208 ~~~~~~~~-~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-~~~~~~~~~~~i~~ai~~ 285 (755)
... ...|..+|||||+|++++.... ......|+||+++++.++++... + .....++++++++
T Consensus 174 -----~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g----~~~~~~~~~~i~~ 237 (508)
T COG1404 174 -----DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGG----SGELSDVAEGIEG 237 (508)
T ss_pred -----CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCC----cccHHHHHHHHHH
Confidence 011 2568999999999999984211 11224899999999999999876 4 5778888999999
Q ss_pred hhhCC--CcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhcC-cEEEEeccCCCCCCCc----cccCC--CceEEeccccC
Q 044682 286 AIHDG--VDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMHG-ILVVAAAGNEGPKPDT----VVNLA--PWLLTVGASTM 356 (755)
Q Consensus 286 a~~~g--vdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~~--p~vitVgA~~~ 356 (755)
++..+ +++||||+|.. . .......+..++..++..| +++|+++||.|..... .+... +.+++|++.+.
T Consensus 238 ~~~~~~~~~~in~s~g~~-~--~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~ 314 (508)
T COG1404 238 AANLGGPADVINLSLGGS-L--SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL 314 (508)
T ss_pred HHhcCCCCcEEEecCCCC-c--cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC
Confidence 99999 99999999975 1 2223444555666777777 9999999999876521 11222 46777777643
Q ss_pred CceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCC
Q 044682 357 DREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 357 ~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCe
Q 044682 437 LENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVE 516 (755)
Q Consensus 437 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~ 516 (755)
.+.++.||++|+.. ..+++|||.+
T Consensus 315 --------------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~ 338 (508)
T COG1404 315 --------------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVN 338 (508)
T ss_pred --------------------------------------------------CCccccccccCCCC------CcceeCCCcc
Confidence 15678899999741 2299999999
Q ss_pred EEe-----eecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCC-CCCHHHHHHHHHhcccc
Q 044682 517 IIA-----AYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHP-DWSPAAIKSAIMTTATT 581 (755)
Q Consensus 517 I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~~sp~~ik~~L~~TA~~ 581 (755)
|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 339 i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 339 ILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred ccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 988 444421 1499999999999999999999999999 89999999999888863
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.8e-21 Score=197.01 Aligned_cols=305 Identities=17% Similarity=0.228 Sum_probs=187.0
Q ss_pred cccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCC
Q 044682 129 NSAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSF 208 (755)
Q Consensus 129 ~~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~ 208 (755)
..+|..+++|++|+++|.|.||||.||+++.. ..--..++|....
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------------ynaeasydfssnd----------- 195 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------------YNAEASYDFSSND----------- 195 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------------cCceeecccccCC-----------
Confidence 37999999999999999999999999999742 1111222333210
Q ss_pred CCCCCCCCCC--C--CCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhh
Q 044682 209 YPTPEHSTAR--D--LDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFD 284 (755)
Q Consensus 209 ~~~~~~~~~~--d--~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~ 284 (755)
++..|+ | .+.|||.|||-+++...++ ++| .|||.+.++..+|+++. .+..|+++|-.
T Consensus 196 ----pfpyprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq-------pymtdlieans 256 (629)
T KOG3526|consen 196 ----PFPYPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ-------PYMTDLIEANS 256 (629)
T ss_pred ----CCCCCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC-------chhhhhhhhcc
Confidence 111222 2 5789999999888776543 344 69999999999999874 56667777643
Q ss_pred hhhh-CCCcEEEEcCCCCCCCCCCchhh---HHHHHHHHHHh-----cCcEEEEeccCCCCCCC-ccc--cCCCceEEec
Q 044682 285 DAIH-DGVDVLSVSLGEPSHKNTEYFKD---AIAIGSFHAMM-----HGILVVAAAGNEGPKPD-TVV--NLAPWLLTVG 352 (755)
Q Consensus 285 ~a~~-~gvdVIn~SlG~~~~~~~~~~~~---~~~~~~~~a~~-----~Gi~vV~AAGN~G~~~~-~~~--~~~p~vitVg 352 (755)
.--+ ..++|.+-|||.... ....+. +..+++.+-++ .|-+.|.|.|..|.+.. ... ..+-|.|++.
T Consensus 257 mghep~kihiysaswgptdd--gktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisin 334 (629)
T KOG3526|consen 257 MGHEPSKIHIYSASWGPTDD--GKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISIN 334 (629)
T ss_pred cCCCCceEEEEecccCcCCC--CcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEee
Confidence 3222 367899999998632 222222 22333333333 35689999999885432 111 1344666665
Q ss_pred cccCCceeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEe
Q 044682 353 ASTMDREFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILV 432 (755)
Q Consensus 353 A~~~~~~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~ 432 (755)
+.-.+.+-. .| +..|+
T Consensus 335 saindg~na-------------------hy-----descs---------------------------------------- 350 (629)
T KOG3526|consen 335 SAINDGENA-------------------HY-----DESCS---------------------------------------- 350 (629)
T ss_pred hhhcCCccc-------------------cc-----cchhh----------------------------------------
Confidence 432221100 00 01111
Q ss_pred cCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceee
Q 044682 433 NPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITA 512 (755)
Q Consensus 433 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~A 512 (755)
.-..+.||+-|-.+ +-
T Consensus 351 ------------------------------------------------------stlastfsng~rnp--------et-- 366 (629)
T KOG3526|consen 351 ------------------------------------------------------STLASTFSNGGRNP--------ET-- 366 (629)
T ss_pred ------------------------------------------------------HHHHHHhhcCCcCC--------Cc--
Confidence 01234677766443 11
Q ss_pred CCCeEEeeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC-C--Cc
Q 044682 513 PGVEIIAAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTG-K--NP 589 (755)
Q Consensus 513 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~-~--~~ 589 (755)
|+.-.-- .+.....-||||.|||-.||+-||-++++|.++..+++.+-.-|.++..-.. + -.
T Consensus 367 -gvattdl--------------yg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~ 431 (629)
T KOG3526|consen 367 -GVATTDL--------------YGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFE 431 (629)
T ss_pred -ceeeecc--------------ccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEE
Confidence 2111111 1125567799999999999999999999999999999988777776532111 0 11
Q ss_pred ccCCCCCCCCCCcCCCCccCccccCCCcccccCCccchhhhhhcCC
Q 044682 590 ITDYDGLKATPFEYGAGHVNPNSAMDPGLVYDLSFYDYLSYICSRG 635 (755)
Q Consensus 590 ~~~~~~~~~~~~~~G~G~vd~~~Al~~~lvyd~~~~~~~~~~~~~~ 635 (755)
++........+.-||+|.+|+.+-+..+.-+...+.- |-|.-|
T Consensus 432 w~mngvglefnhlfgfgvldagamv~lak~wktvppr---yhc~ag 474 (629)
T KOG3526|consen 432 WQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAG 474 (629)
T ss_pred EeccccceeeecccccccccHHHHHHHHHHhccCCCc---eeeccc
Confidence 2223334556778999999998777655545444433 346555
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.73 E-value=2.4e-17 Score=180.47 Aligned_cols=104 Identities=26% Similarity=0.296 Sum_probs=80.8
Q ss_pred cceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhC---CCcEEEEcCCCCCCCCCCchhhHHHHHHHHHHhc
Q 044682 247 GTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHD---GVDVLSVSLGEPSHKNTEYFKDAIAIGSFHAMMH 323 (755)
Q Consensus 247 g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~---gvdVIn~SlG~~~~~~~~~~~~~~~~~~~~a~~~ 323 (755)
..+.||||+|+|+.|+++++ ....++.++.+++.+ +++|||+|||.........+...+..++..|..+
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~--------~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~ 152 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGT--------VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQ 152 (361)
T ss_pred HHHHhccCCCeEEEEEECCc--------CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhC
Confidence 44689999999999999753 234577788888877 9999999999874211223446677788889999
Q ss_pred CcEEEEeccCCCCCCCc-----------cccCCCceEEeccccCCc
Q 044682 324 GILVVAAAGNEGPKPDT-----------VVNLAPWLLTVGASTMDR 358 (755)
Q Consensus 324 Gi~vV~AAGN~G~~~~~-----------~~~~~p~vitVgA~~~~~ 358 (755)
||+||+|+||+|..... .+...|+|++||+++...
T Consensus 153 GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 153 GITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred CeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999999999976542 345789999999997654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.23 E-value=5.3e-11 Score=112.96 Aligned_cols=105 Identities=24% Similarity=0.271 Sum_probs=82.8
Q ss_pred CCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCCCC-CCcccEEEeeHhhHHHHHHHHhcC
Q 044682 391 CNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESLPL-PYHLPTSLVEFDDAQSIIAYNNSI 468 (755)
Q Consensus 391 c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~~-~~~~p~~~i~~~~g~~l~~~~~~~ 468 (755)
|....+...+++|||+||+|+.| +.+|..+++++||.|+|++++.......... ...+|++.|+..+|+.|++|+++
T Consensus 36 g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~dG~~L~~~l~~- 114 (143)
T cd02133 36 GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKEDGEALKAALES- 114 (143)
T ss_pred CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHHHHHHHHHHhC-
Confidence 55555666789999999999999 8999999999999999999987532222111 35689999999999999999988
Q ss_pred CCcEEEEecceeecccCCCCccccccCCCCCC
Q 044682 469 KNPVASVSDVKTEFNTKPSPQMTFFSSRGPST 500 (755)
Q Consensus 469 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~ 500 (755)
+++|.+..+.. ..+++.++.||||||..
T Consensus 115 ---~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 115 ---SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred ---CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 45555555444 45678899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.12 E-value=6e-10 Score=103.41 Aligned_cols=111 Identities=33% Similarity=0.565 Sum_probs=89.4
Q ss_pred EEeCCccEEEEE-ee--c----ceeecCC----CCCCCCCCCCCCCCCccceEEEEecCCc--chhhHHHHHHcCccEEE
Q 044682 364 VTLGDEQIFKEI-MQ--G----PLTQHSM----IGNLECNPGAIDPKKINGKILLCMNHTH--GIDKSQLAAQAGAAGLI 430 (755)
Q Consensus 364 ~~~g~~~~~~g~-l~--~----plv~~~~----~~~~~c~~~~~~~~~~~gkivl~~~~~~--~~~~~~~~~~~Ga~g~i 430 (755)
+++|||+++.|+ |+ . |+++... .....|.+...+..+++||||+|+|+.| +.+|..+++++||.|+|
T Consensus 2 i~LGng~~i~G~sl~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI 81 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNLKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMI 81 (126)
T ss_pred EEeCCCCEEEEEEccCCCCCccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcEEE
Confidence 578999999999 66 2 5655222 2356899888888999999999999887 57899999999999999
Q ss_pred EecCCCCCCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEE
Q 044682 431 LVNPKQLENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVAS 474 (755)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 474 (755)
++++.............+|++.|+..+|+.|++|++++..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 82 LANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99986543333333567999999999999999999998776654
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.87 E-value=5e-09 Score=89.31 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=57.2
Q ss_pred eEEEEeCCCCCCCCCCCcchhhhhhhHHHHHHHhhCCc----ccccccEEEEecceeeeEEEEeCHHHHHHHhCCCCeEE
Q 044682 25 SYIVYLGTHSHGKNPTADDINRARNHHHNFLGSFFGSV----KKARDSISCSYGRHINGFAAILEEEHAQQLAKHPEVLS 100 (755)
Q Consensus 25 ~yiV~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~~g~s~~l~~~~~~~L~~~p~V~~ 100 (755)
+|||.|+++... ......|.+++.+++.+. .....++.+.|+..|+||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 699999998653 234566666666543321 34567899999999999999999999999999999999
Q ss_pred EEeCcccccc
Q 044682 101 IFLDEGRKVQ 110 (755)
Q Consensus 101 V~~~~~~~~~ 110 (755)
|+||+.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999988764
No 47
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.87 E-value=1.5e-08 Score=93.44 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=77.6
Q ss_pred ceeecCCCCCCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCC---CCCC--CCCcccEEE
Q 044682 379 PLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLEN---ESLP--LPYHLPTSL 452 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~---~~~~--~~~~~p~~~ 452 (755)
||++.......+|.+..+...+++|||+||+|+.| +.+|..+++++||.++|++|+..... .... ....+|.++
T Consensus 20 ~lv~~~~~~~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~ 99 (122)
T cd04816 20 PLVPLDPERPAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGV 99 (122)
T ss_pred EEEEcCCCCccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEE
Confidence 66665555568899988888899999999999999 99999999999999999999765211 1111 345699999
Q ss_pred eeHhhHHHHHHHHhcCCCcEEE
Q 044682 453 VEFDDAQSIIAYNNSIKNPVAS 474 (755)
Q Consensus 453 i~~~~g~~l~~~~~~~~~~~~~ 474 (755)
|+..+|+.|++++..+.+.+++
T Consensus 100 Is~~~G~~l~~~l~~g~~v~~~ 121 (122)
T cd04816 100 ITKAAGAALRRRLGAGETLELD 121 (122)
T ss_pred EcHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999999888765543
No 48
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.69 E-value=9e-08 Score=89.69 Aligned_cols=88 Identities=17% Similarity=0.179 Sum_probs=73.2
Q ss_pred CCCCCCCCC--CCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCC----CCCCcccEEEeeHhhHHH
Q 044682 388 NLECNPGAI--DPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESL----PLPYHLPTSLVEFDDAQS 460 (755)
Q Consensus 388 ~~~c~~~~~--~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 460 (755)
...|.+... ++.++.|+|+|++||.| |.+|..+++++||.++|+||+...+.... .....+|.++|+..+|+.
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~ 123 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGME 123 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHH
Confidence 568998887 67889999999999999 99999999999999999999876222111 123468999999999999
Q ss_pred HHHHHhcCCCcEEEE
Q 044682 461 IIAYNNSIKNPVASV 475 (755)
Q Consensus 461 l~~~~~~~~~~~~~i 475 (755)
|++++.++.+.+++|
T Consensus 124 l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 124 ILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHcCCcEEEeC
Confidence 999999988776653
No 49
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.66 E-value=3.1e-08 Score=87.93 Aligned_cols=87 Identities=29% Similarity=0.535 Sum_probs=67.1
Q ss_pred ceeecCC-CCCCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCC----CCCCCCCCCCcccEEE
Q 044682 379 PLTQHSM-IGNLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQ----LENESLPLPYHLPTSL 452 (755)
Q Consensus 379 plv~~~~-~~~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~----~~~~~~~~~~~~p~~~ 452 (755)
|||.... .....|.+......+++||||||+|+.| +.+|..+++++||.|+|+++... ...........+|+++
T Consensus 9 ~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~ 88 (101)
T PF02225_consen 9 PLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVF 88 (101)
T ss_dssp EEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEE
T ss_pred EEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEE
Confidence 6663222 2345677778888999999999999999 99999999999999999999221 1223334467899999
Q ss_pred eeHhhHHHHHHHH
Q 044682 453 VEFDDAQSIIAYN 465 (755)
Q Consensus 453 i~~~~g~~l~~~~ 465 (755)
|+..+|+.|++|+
T Consensus 89 I~~~~g~~L~~~i 101 (101)
T PF02225_consen 89 ISYEDGEALLAYI 101 (101)
T ss_dssp E-HHHHHHHHHHH
T ss_pred eCHHHHhhhhccC
Confidence 9999999999986
No 50
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.64 E-value=1.9e-07 Score=85.05 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=71.0
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCC-CCCCC-------CCCCcccEEEeeHhhH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQL-ENESL-------PLPYHLPTSLVEFDDA 458 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~-~~~~~-------~~~~~~p~~~i~~~~g 458 (755)
...|.+.. ...+++|||+|++||.| |.+|..+++++||.++|++|+... ..... .....+|+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46799744 35689999999999999 999999999999999999997643 11111 1235799999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 044682 459 QSIIAYNNSIKNPVASV 475 (755)
Q Consensus 459 ~~l~~~~~~~~~~~~~i 475 (755)
+.|++.+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988877665
No 51
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.63 E-value=1.6e-07 Score=86.14 Aligned_cols=86 Identities=19% Similarity=0.097 Sum_probs=69.8
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCC----CCCCcccEEEeeHhhHHHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESL----PLPYHLPTSLVEFDDAQSII 462 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~----~~~~~~p~~~i~~~~g~~l~ 462 (755)
...|.+.... .+++|||+||+|+.| +.+|..+++++||.|+|++++........ .....+|++.|+..+|+.|+
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~ 105 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALK 105 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHH
Confidence 4679888874 469999999999999 89999999999999999998865421111 12356999999999999999
Q ss_pred HHHhcCCCcEEE
Q 044682 463 AYNNSIKNPVAS 474 (755)
Q Consensus 463 ~~~~~~~~~~~~ 474 (755)
+|++.+...+++
T Consensus 106 ~~l~~g~~v~v~ 117 (118)
T cd04818 106 AALAAGGTVTVT 117 (118)
T ss_pred HHHhcCCcEEEe
Confidence 999988766543
No 52
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.62 E-value=2.3e-07 Score=84.10 Aligned_cols=80 Identities=23% Similarity=0.395 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCC--CC--CCCCcccEEEeeHhhHHHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENE--SL--PLPYHLPTSLVEFDDAQSII 462 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~--~~~~~~p~~~i~~~~g~~l~ 462 (755)
...|.+..+.+.+++|||+|++||.| |.+|..+++++||.++|++|+...... .. .....||+++|+..+|+.|+
T Consensus 30 ~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 30 SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 46799988888899999999999999 999999999999999999998652111 11 13456899999999999999
Q ss_pred HHHhc
Q 044682 463 AYNNS 467 (755)
Q Consensus 463 ~~~~~ 467 (755)
+.+..
T Consensus 110 ~~l~~ 114 (120)
T cd02129 110 QTFGD 114 (120)
T ss_pred HHhcc
Confidence 88764
No 53
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.6e-07 Score=102.54 Aligned_cols=291 Identities=19% Similarity=0.163 Sum_probs=174.7
Q ss_pred ccccCCCCCCceEEEEEccCCCCCCcCccCCCCCCCCCcccceeecCCCCcccccccccceeeccchhhhhhhccCCCCC
Q 044682 130 SAWNKGRFGEDVIIGVIDSGVWPESKSFSDEGMGPVPLRWRGICQNDTHYGFQCNRKLIGMRYYNQGQIEHARAQNSSFY 209 (755)
Q Consensus 130 ~~~~~~~~G~gV~VgVIDtGid~~Hp~f~~~g~~~~~~~w~g~~~~~~~~~~~~n~kiig~~~~~~~~~~~~~~~g~~~~ 209 (755)
..|..+++|+++.|+|.|.|+...||+.... ....+..++.......
T Consensus 24 ~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~------------------------~~~~~s~d~~~~~~~p--------- 70 (431)
T KOG3525|consen 24 NAWCKGYTGTRVSVTILDDGLECSHPDLRNN------------------------YDPLGSYDVNRHDNDP--------- 70 (431)
T ss_pred eccccCCCCCceEEEEeeccccccCcccccc------------------------cCcceeEeeecCCCCc---------
Confidence 7899999999999999999999999998742 1122333333221110
Q ss_pred CCCCCCCCCCCCCCchhhhHhhccCCCCcccccccCCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhh-
Q 044682 210 PTPEHSTARDLDGHGTHAASTAVGNFVANVSVFGNGYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIH- 288 (755)
Q Consensus 210 ~~~~~~~~~d~~gHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~- 288 (755)
....+......|||-|++-.+....+..- ..|+++++++..++++... ..+...+......
T Consensus 71 --~~~~~~~~~~~~g~~Ca~~~a~~~~~~~C--------~vg~~~~~~~~g~~~l~~~--------v~~~~~~~~~~~~~ 132 (431)
T KOG3525|consen 71 --EPRCDGTNENKHGTRCAGCVAARANNLTC--------GVGVAYNATIGGIRMLAGC--------VSDAVEAPSLGFGP 132 (431)
T ss_pred --ccccCCCCccccCCCCCcccccccCCCcC--------CCCcccCccccceeeeeee--------cccceecccccCCC
Confidence 01112224688999999999988622211 2789999999999998632 2244444443333
Q ss_pred CCCcEEEEcCCCCCCCCCCch-hhHHHHHHHH-----HHhcCcEEEEeccCCCCCCCcccc--CCC--ceEEeccccCCc
Q 044682 289 DGVDVLSVSLGEPSHKNTEYF-KDAIAIGSFH-----AMMHGILVVAAAGNEGPKPDTVVN--LAP--WLLTVGASTMDR 358 (755)
Q Consensus 289 ~gvdVIn~SlG~~~~~~~~~~-~~~~~~~~~~-----a~~~Gi~vV~AAGN~G~~~~~~~~--~~p--~vitVgA~~~~~ 358 (755)
.-+++-+.|||.......-.. ......+... ...+|-+.|++.||.|.......- ..+ +.++.+..+...
T Consensus 133 ~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~~~ 212 (431)
T KOG3525|consen 133 CHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQCG 212 (431)
T ss_pred CCceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccccC
Confidence 357899999998732111111 1111222222 345678999999998855433211 112 222222222111
Q ss_pred eeEEEEEeCCccEEEEEeecceeecCCCCCCCCCCCCCCCCCccceEEEEecCCcchhhHHHHHHcCccEEEEecCCCCC
Q 044682 359 EFTSYVTLGDEQIFKEIMQGPLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTHGIDKSQLAAQAGAAGLILVNPKQLE 438 (755)
Q Consensus 359 ~~~~~~~~g~~~~~~g~l~~plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~~~~~~~~~~~~Ga~g~i~~~~~~~~ 438 (755)
.++ . ..+
T Consensus 213 ~~p----------------------------------~----y~~----------------------------------- 219 (431)
T KOG3525|consen 213 KKP----------------------------------Q----YRE----------------------------------- 219 (431)
T ss_pred CCc----------------------------------c----ccc-----------------------------------
Confidence 000 0 000
Q ss_pred CCCCCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEEEecceeecccCCCCccccccCCCCCCCCCCCCCCceeeCCCeEE
Q 044682 439 NESLPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVASVSDVKTEFNTKPSPQMTFFSSRGPSTINPNIIKPDITAPGVEII 518 (755)
Q Consensus 439 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~Gp~~~~~~~~KPDI~APG~~I~ 518 (755)
.-.....+.+|+.+| . +. -|.
T Consensus 220 ---------------------------------------------~C~~~~~s~~s~~~~-~--------~~-----~~~ 240 (431)
T KOG3525|consen 220 ---------------------------------------------RCASCLASTYSSGGP-T--------EE-----CIV 240 (431)
T ss_pred ---------------------------------------------cccccccccccCCCC-c--------ce-----eee
Confidence 000134456788888 3 11 122
Q ss_pred eeecCCCCCCCCCCCCCCcCCeeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCcccCCCCCCC
Q 044682 519 AAYSEAVAPSKSPSDDRRIPFNACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSAIMTTATTTDHTGKNPITDYDGLKA 598 (755)
Q Consensus 519 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~ 598 (755)
.+... ...-.--.|||.++|+.||+.+|.++++|.++..++..+...++....... ..++.......
T Consensus 241 ~~~~~------------~~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~-~~~~~n~~g~~ 307 (431)
T KOG3525|consen 241 CTDPR------------HSCTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLK-GKWKSNGAGGL 307 (431)
T ss_pred ecCCC------------ccccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccC-CCceEecCCce
Confidence 22221 013344569999999999999999999999999999999999998765554 34443333334
Q ss_pred CCCcCCCCccCccccCCC
Q 044682 599 TPFEYGAGHVNPNSAMDP 616 (755)
Q Consensus 599 ~~~~~G~G~vd~~~Al~~ 616 (755)
....+|+|++|+.+-+..
T Consensus 308 ~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 308 VSHLYGFGLLDAKALVSC 325 (431)
T ss_pred eeeeecccccCcchhhhh
Confidence 456799999998776663
No 54
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.55 E-value=3.8e-07 Score=84.26 Aligned_cols=95 Identities=15% Similarity=-0.011 Sum_probs=72.3
Q ss_pred ceeecCCCCCCCCCCCCCCC-C-----CccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCC-C---------
Q 044682 379 PLTQHSMIGNLECNPGAIDP-K-----KINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENE-S--------- 441 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~-~-----~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~--------- 441 (755)
.|+++.+ ....|.+..... + ...++|+|++||.| |.+|..+++++||.++|++|+.+.... .
T Consensus 14 ~l~~~~~-~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~ 92 (127)
T cd02125 14 VVVYPKE-NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSA 92 (127)
T ss_pred EEEecCC-ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCccccccc
Confidence 4455443 456898876542 2 37899999999999 999999999999999999998543110 0
Q ss_pred -CCCCCcccEEEeeHhhHHHHHHHHhcCCCcEEE
Q 044682 442 -LPLPYHLPTSLVEFDDAQSIIAYNNSIKNPVAS 474 (755)
Q Consensus 442 -~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 474 (755)
......+|+++|+..+|+.|++.+.++..++++
T Consensus 93 ~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 93 DYIEKITIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred ccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 012336899999999999999999988776654
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.55 E-value=3e-07 Score=85.08 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=69.6
Q ss_pred CCCCCCC--CCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCC--C----CCCCcccEEEeeHhhHH
Q 044682 389 LECNPGA--IDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENES--L----PLPYHLPTSLVEFDDAQ 459 (755)
Q Consensus 389 ~~c~~~~--~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~--~----~~~~~~p~~~i~~~~g~ 459 (755)
..|.+.. +...+++|||+||+|+.| +.+|..+++++||.|+|++++....... . .....+|++.|+..+|+
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~ 110 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGE 110 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHH
Confidence 4588877 677889999999999999 8999999999999999999986532111 1 13457999999999999
Q ss_pred HHHHHHhcCCCcEE
Q 044682 460 SIIAYNNSIKNPVA 473 (755)
Q Consensus 460 ~l~~~~~~~~~~~~ 473 (755)
.|++|+.++.+.++
T Consensus 111 ~l~~~~~~~~~v~~ 124 (126)
T cd00538 111 ALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHhcCCceEE
Confidence 99999998665544
No 56
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.52 E-value=4.8e-07 Score=83.75 Aligned_cols=85 Identities=15% Similarity=0.194 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCC----CCC---C-----CCCCcccEEEee
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLE----NES---L-----PLPYHLPTSLVE 454 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~----~~~---~-----~~~~~~p~~~i~ 454 (755)
...|.+... +.+++|||+|++|+.| |.+|..+++++||.++|++|+.... ... . .+...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 5578999999999999 9999999999999999999875431 011 1 124578999999
Q ss_pred HhhHHHHHHHHhcCCCcEE
Q 044682 455 FDDAQSIIAYNNSIKNPVA 473 (755)
Q Consensus 455 ~~~g~~l~~~~~~~~~~~~ 473 (755)
..+|+.|++++..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988766544
No 57
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.52 E-value=5e-07 Score=83.30 Aligned_cols=92 Identities=28% Similarity=0.319 Sum_probs=72.0
Q ss_pred ceeecCCCCCCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCC-C-C--CCCCCcccEEEe
Q 044682 379 PLTQHSMIGNLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLEN-E-S--LPLPYHLPTSLV 453 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~-~-~--~~~~~~~p~~~i 453 (755)
++++.. ...|.+..+ +.+++|||+|++|+.| +.+|..+++++||.++|++|+...+. . . ..+...+|.+.|
T Consensus 25 ~lv~~~---~~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~I 100 (122)
T cd02130 25 PLVVVP---NLGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGI 100 (122)
T ss_pred EEEEeC---CCCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEe
Confidence 555532 457887655 3579999999999999 99999999999999999999863221 1 1 112457999999
Q ss_pred eHhhHHHHHHHHhcCCCcEEE
Q 044682 454 EFDDAQSIIAYNNSIKNPVAS 474 (755)
Q Consensus 454 ~~~~g~~l~~~~~~~~~~~~~ 474 (755)
+..+|+.|++.++++.+.+++
T Consensus 101 s~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 101 SQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred cHHHHHHHHHHHhcCCcEEEe
Confidence 999999999999998876654
No 58
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.47 E-value=1.1e-06 Score=81.35 Aligned_cols=86 Identities=19% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCC-CCCCCCcccEEEeeHhhHHHHHHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENE-SLPLPYHLPTSLVEFDDAQSIIAYN 465 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~~~ 465 (755)
...|.+...+..+++|||+|++|+.| +.+|..+++++||.++|+||+...... ...+...+|.+.+ ..+|+.|++.+
T Consensus 41 ~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l 119 (129)
T cd02124 41 DDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDAL 119 (129)
T ss_pred cccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHH
Confidence 56899887777789999999999999 999999999999999999988653211 1222334566656 99999999999
Q ss_pred hcCCCcEEE
Q 044682 466 NSIKNPVAS 474 (755)
Q Consensus 466 ~~~~~~~~~ 474 (755)
..+...+++
T Consensus 120 ~~G~~vtv~ 128 (129)
T cd02124 120 AAGSNVTVD 128 (129)
T ss_pred hcCCeEEEe
Confidence 887765543
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.45 E-value=8.5e-07 Score=83.55 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=67.5
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCC------CCCCcccEEEeeHhhHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESL------PLPYHLPTSLVEFDDAQS 460 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 460 (755)
...|.+.. .+++|||+|++|+.| |.+|..+++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798765 378999999999999 99999999999999999998764321111 113579999999999999
Q ss_pred HHHHHhcCCCcEE
Q 044682 461 IIAYNNSIKNPVA 473 (755)
Q Consensus 461 l~~~~~~~~~~~~ 473 (755)
|++.+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998876554
No 60
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.31 E-value=2.9e-06 Score=77.16 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=63.5
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCC--CC----CCCCcccEEEeeHhhHHH
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENE--SL----PLPYHLPTSLVEFDDAQS 460 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~--~~----~~~~~~p~~~i~~~~g~~ 460 (755)
...|.+. +.++++|||+|++||.| |.+|..+++++||.++|++|+...... .. .....+|+++|+..+++.
T Consensus 27 ~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~ 104 (117)
T cd04813 27 TDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHL 104 (117)
T ss_pred CCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHH
Confidence 4679776 56889999999999999 999999999999999999987653211 11 223479999999999999
Q ss_pred HHHHHhc
Q 044682 461 IIAYNNS 467 (755)
Q Consensus 461 l~~~~~~ 467 (755)
|..++..
T Consensus 105 L~~l~~~ 111 (117)
T cd04813 105 LSSLLPK 111 (117)
T ss_pred HHHhccc
Confidence 9887654
No 61
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=4.7e-06 Score=99.56 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=60.5
Q ss_pred CCcceeeecCCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCC-cEEEEcCCCCCCCC--CCchhhHHHHHHHHHH
Q 044682 245 GYGTAKGGSPRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGV-DVLSVSLGEPSHKN--TEYFKDAIAIGSFHAM 321 (755)
Q Consensus 245 ~~g~~~GvAP~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gv-dVIn~SlG~~~~~~--~~~~~~~~~~~~~~a~ 321 (755)
+-....-+||+|+|..|-+- . .....+..|+.+....=+ -+|-.||+....-. ..-.-+.+....+.|.
T Consensus 284 DVE~s~A~AP~A~I~lvvap--~------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qas 355 (1174)
T COG4934 284 DVEWSHAMAPKANIDLVVAP--N------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQAS 355 (1174)
T ss_pred ehhhhhccCccCceEEEEcC--C------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhh
Confidence 33445678999999998772 1 223333333333322211 23335666431000 1113445555666788
Q ss_pred hcCcEEEEeccCCCCCCCc--------cccCCCceEEecc
Q 044682 322 MHGILVVAAAGNEGPKPDT--------VVNLAPWLLTVGA 353 (755)
Q Consensus 322 ~~Gi~vV~AAGN~G~~~~~--------~~~~~p~vitVgA 353 (755)
.+||.+++|+|.+|....+ .+..+|++.+||.
T Consensus 356 aeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 356 AEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999999999999865543 2236799999997
No 62
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.25 E-value=4.6e-06 Score=79.88 Aligned_cols=83 Identities=18% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCCCCCCCCCC---CCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCC-CCCCC-----CCCcccEEEeeHhh
Q 044682 388 NLECNPGAIDP---KKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLE-NESLP-----LPYHLPTSLVEFDD 457 (755)
Q Consensus 388 ~~~c~~~~~~~---~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~-~~~~~-----~~~~~p~~~i~~~~ 457 (755)
..+|.+....+ ..+.|+|+|++||.| |.+|..+++++||.++|++|+.... ..... ....+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798877644 789999999999999 9999999999999999999986532 11111 24579999999999
Q ss_pred HHHHHHHHhcCCC
Q 044682 458 AQSIIAYNNSIKN 470 (755)
Q Consensus 458 g~~l~~~~~~~~~ 470 (755)
|+.|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 63
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.17 E-value=7.9e-06 Score=76.32 Aligned_cols=74 Identities=24% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCCCCccceEEEEecCCc------chhhHHHHHHcCccEEEEecCC--CCC-CCCCCC---CCcccEEEeeHhhHHHHH
Q 044682 395 AIDPKKINGKILLCMNHTH------GIDKSQLAAQAGAAGLILVNPK--QLE-NESLPL---PYHLPTSLVEFDDAQSII 462 (755)
Q Consensus 395 ~~~~~~~~gkivl~~~~~~------~~~~~~~~~~~Ga~g~i~~~~~--~~~-~~~~~~---~~~~p~~~i~~~~g~~l~ 462 (755)
.+.+.+++|||+|++|+.| |.+|..+++++||.++|+||+. ... .....+ ...+|++.|+..+|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 3445689999999999988 7899999999999999999997 321 111122 458999999999999999
Q ss_pred HHHhcC
Q 044682 463 AYNNSI 468 (755)
Q Consensus 463 ~~~~~~ 468 (755)
+.+...
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 987543
No 64
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.87 E-value=0.0001 Score=68.44 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=60.3
Q ss_pred CCCCCCccceEEEEecCCc---chhhHHHHHHcCccEEEEecCCCCCCCC-----C--CCCCcccEEEeeHhhHHHHHHH
Q 044682 395 AIDPKKINGKILLCMNHTH---GIDKSQLAAQAGAAGLILVNPKQLENES-----L--PLPYHLPTSLVEFDDAQSIIAY 464 (755)
Q Consensus 395 ~~~~~~~~gkivl~~~~~~---~~~~~~~~~~~Ga~g~i~~~~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~~ 464 (755)
.+...+++|||++++++.+ +.+|..+++++||.|+|++|+....... . .....+|++.|+.++|+.|...
T Consensus 37 d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~ 116 (127)
T cd04819 37 DFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARV 116 (127)
T ss_pred HcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHH
Confidence 3345679999999999887 6789999999999999999876532211 1 2235799999999999999999
Q ss_pred HhcCCC
Q 044682 465 NNSIKN 470 (755)
Q Consensus 465 ~~~~~~ 470 (755)
++.+..
T Consensus 117 l~~g~~ 122 (127)
T cd04819 117 AERNDT 122 (127)
T ss_pred HhcCCc
Confidence 987543
No 65
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=97.77 E-value=0.00014 Score=65.89 Aligned_cols=84 Identities=24% Similarity=0.438 Sum_probs=55.1
Q ss_pred EEeecCCceEEEEEEEEecCCCCceEEEEEecC--------Cce-----------EEEEEceeEEEecCCeEEEEEEEEE
Q 044682 666 IAIPDLNESVTITRRVKNVGTHNSSYEANVEGV--------DGV-----------SVVVEPNNLSFTEYGEERTFKVTFT 726 (755)
Q Consensus 666 i~~~~~~~~~~~~~tv~nv~~~~~~y~~~~~~~--------~g~-----------~v~v~p~~~~~~~~g~~~~~~v~~~ 726 (755)
|++++.....+++++|+|.|+...+|+++.... .|. .+...|.++++ ++|++++|+|+|+
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 455666667899999999999999999976611 111 56778889999 8999999999999
Q ss_pred eccCCCCCCCCCCeEEEEEEEECCCC
Q 044682 727 PERNVEPKPKAEKYIFGKLIWSDSDG 752 (755)
Q Consensus 727 ~~~~~~~~~~~~~~~~g~~~~~~~~~ 752 (755)
+.... .... ..+++|+|.+++...
T Consensus 80 ~p~~~-~~~~-~~~~eG~I~~~~~~~ 103 (112)
T PF06280_consen 80 PPSGL-DASN-GPFYEGFITFKSSDG 103 (112)
T ss_dssp --GGG-HHTT--EEEEEEEEEESSTT
T ss_pred ehhcC-Cccc-CCEEEEEEEEEcCCC
Confidence 93100 0133 678999999987643
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.91 E-value=0.004 Score=58.27 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=58.3
Q ss_pred CCCCccceEEEEecCCc-------chhh-------HHHHHHcCccEEEEecCCCC-------CCCCC-CCCCcccEEEee
Q 044682 397 DPKKINGKILLCMNHTH-------GIDK-------SQLAAQAGAAGLILVNPKQL-------ENESL-PLPYHLPTSLVE 454 (755)
Q Consensus 397 ~~~~~~gkivl~~~~~~-------~~~~-------~~~~~~~Ga~g~i~~~~~~~-------~~~~~-~~~~~~p~~~i~ 454 (755)
+..+++||||++.++.| +..| ...++++||.++|++|.... +.... .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999999888 4445 68999999999999985321 11111 223469999999
Q ss_pred HhhHHHHHHHHhcCCCcEE
Q 044682 455 FDDAQSIIAYNNSIKNPVA 473 (755)
Q Consensus 455 ~~~g~~l~~~~~~~~~~~~ 473 (755)
.+++..|...++.+..+..
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765543
No 67
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.59 E-value=0.0051 Score=60.12 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=55.2
Q ss_pred CCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCC------------------CCCCC------------C---
Q 044682 398 PKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQL------------------ENESL------------P--- 443 (755)
Q Consensus 398 ~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~------------------~~~~~------------~--- 443 (755)
..+++|||+|++++.| +.+|..+++++||+|+|+|++... ++.+. .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4579999999999999 899999999999999999988421 00000 0
Q ss_pred -CCCcccEEEeeHhhHHHHHHHHhc
Q 044682 444 -LPYHLPTSLVEFDDAQSIIAYNNS 467 (755)
Q Consensus 444 -~~~~~p~~~i~~~~g~~l~~~~~~ 467 (755)
....||+.-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013588999999999999998754
No 68
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.36 E-value=0.013 Score=64.04 Aligned_cols=79 Identities=24% Similarity=0.399 Sum_probs=65.3
Q ss_pred CCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCC------CCCCCCCCCcccEEEeeHhhHHHHHHHHhcCCC
Q 044682 398 PKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQL------ENESLPLPYHLPTSLVEFDDAQSIIAYNNSIKN 470 (755)
Q Consensus 398 ~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 470 (755)
..++++|+++..||.| |.+|...++.+||.++++.|+..+ ++.....+..||+++|.+++++.+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 4578999999999999 999999999999999999999542 223333457899999999999999987777777
Q ss_pred cEEEEe
Q 044682 471 PVASVS 476 (755)
Q Consensus 471 ~~~~i~ 476 (755)
.++.+.
T Consensus 171 V~~~lY 176 (541)
T KOG2442|consen 171 VELALY 176 (541)
T ss_pred EEEEEE
Confidence 666554
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.15 E-value=0.012 Score=55.37 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=47.5
Q ss_pred ceeecCC-CCCCCCCCCCCCCCCccceEEEEecCCc-------------------chhhHHHHHHcCccEEEEecCCC
Q 044682 379 PLTQHSM-IGNLECNPGAIDPKKINGKILLCMNHTH-------------------GIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 379 plv~~~~-~~~~~c~~~~~~~~~~~gkivl~~~~~~-------------------~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
|+|+.+. .....|....+...|++||||++.++.| +..|...++++||.|+|++++..
T Consensus 23 elVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 23 PLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred eeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 7777663 2456788888888899999999998865 34699999999999999999865
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.87 E-value=0.019 Score=53.66 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=46.9
Q ss_pred ceeecCCC-CCCCCCCCCCCCCCccceEEEEecCCc-------------chhhHHHHHHcCccEEEEecCCC
Q 044682 379 PLTQHSMI-GNLECNPGAIDPKKINGKILLCMNHTH-------------GIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 379 plv~~~~~-~~~~c~~~~~~~~~~~gkivl~~~~~~-------------~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
||||.+.. ....|....+...+++|||||+.++.| +..|..++.++||.|+|++++..
T Consensus 25 elVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 25 PLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred eEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 66766542 346687777778899999999999875 44799999999999999999854
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.85 E-value=0.049 Score=51.78 Aligned_cols=85 Identities=22% Similarity=0.210 Sum_probs=56.5
Q ss_pred ceeecCCC-CCCCCCCCCCCCCCccceEEEEecCC------------------c-chhhHHHHHHcCccEEEEecCCCCC
Q 044682 379 PLTQHSMI-GNLECNPGAIDPKKINGKILLCMNHT------------------H-GIDKSQLAAQAGAAGLILVNPKQLE 438 (755)
Q Consensus 379 plv~~~~~-~~~~c~~~~~~~~~~~gkivl~~~~~------------------~-~~~~~~~~~~~Ga~g~i~~~~~~~~ 438 (755)
|+||.+.. ....|....+...+++|||||+.++. | +..|..++.+.||.|+|++++....
T Consensus 23 ~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~~ 102 (151)
T cd04822 23 PVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNSH 102 (151)
T ss_pred eEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCccc
Confidence 67776643 35667777777889999999998763 3 5689999999999999999986432
Q ss_pred C---CCCCCCCcccEEEeeHhhHHHHHH
Q 044682 439 N---ESLPLPYHLPTSLVEFDDAQSIIA 463 (755)
Q Consensus 439 ~---~~~~~~~~~p~~~i~~~~g~~l~~ 463 (755)
. ........-..+.++......++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 103 SGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred CcccccccccCccceEEechHHHHHHhh
Confidence 1 111110111155566665555554
No 72
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.68 E-value=0.044 Score=51.55 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCC
Q 044682 399 KKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 399 ~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
-+++|||+|++.|.. +..|..++++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 579999999999999 99999999999999999999854
No 73
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=94.42 E-value=0.052 Score=54.95 Aligned_cols=53 Identities=23% Similarity=0.234 Sum_probs=42.4
Q ss_pred ceeecCCCCCCCCCCCCCC-----CCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCC
Q 044682 379 PLTQHSMIGNLECNPGAID-----PKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQ 436 (755)
Q Consensus 379 plv~~~~~~~~~c~~~~~~-----~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~ 436 (755)
+|||.. +|....++ ..+++|||||++++.+ +.+|..+++++||+|+|+|++..
T Consensus 48 ~lVyvn-----yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 48 ELVYAN-----YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred EEEEcC-----CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 566644 35544332 5689999999999999 78999999999999999999854
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.36 E-value=0.2 Score=41.92 Aligned_cols=55 Identities=29% Similarity=0.329 Sum_probs=36.9
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTHN-SSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~-~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
.+.+++.+|+|.|... ...+++++.|.|-++...|..+.--++|+++++++++++
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~v 60 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTV 60 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEEC
Confidence 5788999999998654 568888999999998888887753389999999999998
No 75
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=93.06 E-value=0.11 Score=48.36 Aligned_cols=88 Identities=13% Similarity=0.045 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCC------C----CCCCcccEEEeeHh
Q 044682 388 NLECNPGAIDPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENES------L----PLPYHLPTSLVEFD 456 (755)
Q Consensus 388 ~~~c~~~~~~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~------~----~~~~~~p~~~i~~~ 456 (755)
..+|.+... .-+..+.|.|++||.| |..|..+++++||..+|+.++....++. + .+...+|++.+-..
T Consensus 74 p~aC~elrN-~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~ 152 (193)
T KOG3920|consen 74 PHACEELRN-EIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGV 152 (193)
T ss_pred hhHHHHHhh-cccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEecc
Confidence 456765442 2357789999999999 9999999999999999999876543322 1 23568999999888
Q ss_pred hHHHHHHHHhcCCCcEEEEe
Q 044682 457 DAQSIIAYNNSIKNPVASVS 476 (755)
Q Consensus 457 ~g~~l~~~~~~~~~~~~~i~ 476 (755)
+|..+..-++.-...-+.|.
T Consensus 153 ~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 153 TGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred ceEEEehhHHHhCCccEEEe
Confidence 88777766665555444443
No 76
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=90.95 E-value=3.9 Score=35.88 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=44.1
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
...+.+++|+|.+.....|++.......-.++++|..-.+ .+|++.+++|+|.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~ 73 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSP 73 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEe
Confidence 4677888999999999999987654335567788877667 79999999999996
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.33 E-value=0.66 Score=49.85 Aligned_cols=80 Identities=18% Similarity=0.104 Sum_probs=61.4
Q ss_pred CCCCCCCC---CCCCccceEEEEecCCc-chhhHHHHHHcCccEEEEecCCCCCCCCCC----CCCcccEEEeeHhhHHH
Q 044682 389 LECNPGAI---DPKKINGKILLCMNHTH-GIDKSQLAAQAGAAGLILVNPKQLENESLP----LPYHLPTSLVEFDDAQS 460 (755)
Q Consensus 389 ~~c~~~~~---~~~~~~gkivl~~~~~~-~~~~~~~~~~~Ga~g~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~~ 460 (755)
.+|++... ..+.....++|+.|++| |.+|..+++++|..++|+||+....+.... ....++..+++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45766433 24556778999999999 999999999999999999998654433222 24568899999999999
Q ss_pred HHHHHhcC
Q 044682 461 IIAYNNSI 468 (755)
Q Consensus 461 l~~~~~~~ 468 (755)
|..|....
T Consensus 143 l~~~~~~~ 150 (348)
T KOG4628|consen 143 LSSYAGRT 150 (348)
T ss_pred HHHhhccc
Confidence 98875543
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=90.32 E-value=2 Score=39.01 Aligned_cols=54 Identities=24% Similarity=0.330 Sum_probs=39.3
Q ss_pred eEEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEec
Q 044682 674 SVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPE 728 (755)
Q Consensus 674 ~~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 728 (755)
.-.++++|.|....+.+|++++..++|+.+......+++ ++|++.++.|.+.+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p 85 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAP 85 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEEC
Confidence 456889999999999999999999889999654578889 899999999999983
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=87.66 E-value=5.9 Score=36.31 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=50.9
Q ss_pred CceEEEEEEEEecCCCCceEEEEEecC----Cce-E-------------------EEEEceeEEEecCCeEEEEEEEEEe
Q 044682 672 NESVTITRRVKNVGTHNSSYEANVEGV----DGV-S-------------------VVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 672 ~~~~~~~~tv~nv~~~~~~y~~~~~~~----~g~-~-------------------v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
+.+.+++++|+|.++...+|.+.+... .|+ . +++ |..+++ +++++++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 468899999999999999999865421 221 1 222 455888 89999999999998
Q ss_pred ccCCCCCCCCCCeEEEEEEEE
Q 044682 728 ERNVEPKPKAEKYIFGKLIWS 748 (755)
Q Consensus 728 ~~~~~~~~~~~~~~~g~~~~~ 748 (755)
....- .+-+-|.|.++
T Consensus 104 ----P~~~f-~G~ilGGi~~~ 119 (121)
T PF06030_consen 104 ----PKKAF-DGIILGGIYFS 119 (121)
T ss_pred ----CCCCc-CCEEEeeEEEE
Confidence 33334 57788888875
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=86.25 E-value=1.9 Score=41.39 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.0
Q ss_pred CCCCCCccceEEEEecCCc-c-------------------hhhHHHHHHcCccEEEEecCC
Q 044682 395 AIDPKKINGKILLCMNHTH-G-------------------IDKSQLAAQAGAAGLILVNPK 435 (755)
Q Consensus 395 ~~~~~~~~gkivl~~~~~~-~-------------------~~~~~~~~~~Ga~g~i~~~~~ 435 (755)
.+...|++||||++..+.. + ..|...+.+.||.|+|++.+.
T Consensus 42 Dy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~ 102 (157)
T cd04821 42 DYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHET 102 (157)
T ss_pred cccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 4556799999999996553 1 248999999999999999764
No 81
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.43 E-value=1.3 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=22.0
Q ss_pred CCCCCceEEEEEccCCCCCCcCcc
Q 044682 135 GRFGEDVIIGVIDSGVWPESKSFS 158 (755)
Q Consensus 135 ~~~G~gV~VgVIDtGid~~Hp~f~ 158 (755)
.+.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999988875
No 82
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=76.12 E-value=19 Score=32.74 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=40.1
Q ss_pred ceEEEEEEEEecCCCCceEEEEEec---CC----ceEEEEEceeEEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVEG---VD----GVSVVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~~---~~----g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
...+.+++|+|.++....+.+.+.. .. .-.+.++|..+++ ++|+++++.| +..
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRG 73 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EEC
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-Eec
Confidence 4457799999999766666666654 11 1257899999999 8999999999 654
No 83
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=75.50 E-value=7.9 Score=36.15 Aligned_cols=68 Identities=12% Similarity=0.240 Sum_probs=48.4
Q ss_pred EEEEEEEEecCC-CCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEeccCCCCCCCCCCeEEEEEEEEC
Q 044682 675 VTITRRVKNVGT-HNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSD 749 (755)
Q Consensus 675 ~~~~~tv~nv~~-~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 749 (755)
..+..-+-|-.+ .-..-++......++++.-.|..+++ .|++.++++.++... ... .+..||.|+|..
T Consensus 71 IvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVs-----Ste-tGvIfG~I~Yd~ 139 (140)
T PF07718_consen 71 IVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVS-----STE-TGVIFGNIVYDG 139 (140)
T ss_pred EEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEE-----ecc-CCEEEEEEEEec
Confidence 344444555542 22333455555678888888999999 899999999999982 345 789999999863
No 84
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=74.57 E-value=16 Score=32.23 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=40.4
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEec
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPE 728 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 728 (755)
......++|+|.++....|++.-..|.. ..|.|..-.+ ++|++.++.|++...
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPF 70 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEec
Confidence 4567888999999988999998888876 5567988778 799999999999873
No 85
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=68.42 E-value=19 Score=40.57 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=46.4
Q ss_pred eEEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEec
Q 044682 674 SVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPE 728 (755)
Q Consensus 674 ~~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~ 728 (755)
...+++++.|.+..+.+|+++++..++..+...+..+++ ++|++.++.|++...
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~ 400 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTP 400 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEec
Confidence 456888899999999999999999889888875457888 899999999999883
No 86
>COG1470 Predicted membrane protein [Function unknown]
Probab=65.61 E-value=19 Score=40.08 Aligned_cols=65 Identities=26% Similarity=0.355 Sum_probs=50.9
Q ss_pred ceEEEEEEEEecCCCC-ceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEeccCCCCCCCCCCeE
Q 044682 673 ESVTITRRVKNVGTHN-SSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYI 741 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~-~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~ 741 (755)
...++...+.|.|+.+ ..-++++..|+|-++.|.|..+-.-++|++.++++|+++. ..... +.|.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP---~~a~a-GdY~ 462 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVP---EDAGA-GDYR 462 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcC---CCCCC-CcEE
Confidence 5678899999999754 4467889999999999999976444899999999999983 33333 5653
No 87
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=63.71 E-value=55 Score=28.88 Aligned_cols=55 Identities=22% Similarity=0.340 Sum_probs=36.8
Q ss_pred CceEEEEEEEEecCCCC-ceEE-----EEEecCCceE---EEEEceeEEEecCCeEEEEEEEEEec
Q 044682 672 NESVTITRRVKNVGTHN-SSYE-----ANVEGVDGVS---VVVEPNNLSFTEYGEERTFKVTFTPE 728 (755)
Q Consensus 672 ~~~~~~~~tv~nv~~~~-~~y~-----~~~~~~~g~~---v~v~p~~~~~~~~g~~~~~~v~~~~~ 728 (755)
+...++..+++|..+.. .+-+ .++..+ |+. .......+++ ++|++.++++++.+.
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPS 77 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEce
Confidence 35788999999998755 4422 234444 653 5666667788 899999999999983
No 88
>COG1470 Predicted membrane protein [Function unknown]
Probab=62.99 E-value=32 Score=38.39 Aligned_cols=55 Identities=16% Similarity=0.354 Sum_probs=45.3
Q ss_pred ceEEEEEEEEecCCCCceEEEEEe-cCCceEEEEEc-----eeEEEecCCeEEEEEEEEEec
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVE-GVDGVSVVVEP-----NNLSFTEYGEERTFKVTFTPE 728 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~-~~~g~~v~v~p-----~~~~~~~~g~~~~~~v~~~~~ 728 (755)
.+..+++++.|.|..+.+|.+++. .|.|-...+.- .++.+ ++||+++|+|.+.+.
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps 344 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPS 344 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecC
Confidence 467899999999999999999998 78877665543 34566 799999999999984
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=53.72 E-value=43 Score=24.67 Aligned_cols=44 Identities=23% Similarity=0.280 Sum_probs=25.9
Q ss_pred EEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEE
Q 044682 679 RRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTF 725 (755)
Q Consensus 679 ~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~ 725 (755)
++++|.|+....- -.++..=|-. +++...-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I-~~v~tsCgCt-~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVI-TDVQTSCGCT-TAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEE-EEeeEccCCE-EeeCCcceE-CCCCEEEEEEEC
Confidence 6789998644332 2334333432 223333346 799999998875
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=51.28 E-value=92 Score=26.48 Aligned_cols=51 Identities=39% Similarity=0.391 Sum_probs=32.3
Q ss_pred ceEEEEEEEEecCCC-CceEEEEEecCCceEEEEEcee-EEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTH-NSSYEANVEGVDGVSVVVEPNN-LSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~-~~~y~~~~~~~~g~~v~v~p~~-~~~~~~g~~~~~~v~~~~ 727 (755)
...+++.+|+|.|.. ...+.+.+... |..+ .-.. -.+ ++|++.++++++..
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTP 71 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEe
Confidence 678899999999975 45566665433 3333 1112 256 78999999988888
No 91
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=45.09 E-value=58 Score=27.18 Aligned_cols=39 Identities=33% Similarity=0.522 Sum_probs=28.9
Q ss_pred EEEEEceeEEEecCCeEEEEEEEEEeccCCCCCCCCCCeEEEEEEEECC
Q 044682 702 SVVVEPNNLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDS 750 (755)
Q Consensus 702 ~v~v~p~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~ 750 (755)
.+++.|..+++ ..|++..|+++++. .. . .. ...+.|+..
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~----~~--~-~~--~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTP----SS--A-KV--TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEEC----CC--C-Cc--cceEEEEEC
Confidence 57889999999 68999999999876 21 1 11 566788754
No 92
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=43.14 E-value=64 Score=39.41 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=35.6
Q ss_pred ceEEEEEEEEecCCCCceEEEE--EecCCceEEEEEc-------eeEEEecCCeEEEEEEEEEecc
Q 044682 673 ESVTITRRVKNVGTHNSSYEAN--VEGVDGVSVVVEP-------NNLSFTEYGEERTFKVTFTPER 729 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~--~~~~~g~~v~v~p-------~~~~~~~~g~~~~~~v~~~~~~ 729 (755)
++.+++++|+|+|+.+..-.+. +..|.+- +. .| .++.+ ++||++++++++....
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 4578999999999765544443 3444321 21 23 23456 8999999999998743
No 93
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=41.58 E-value=2e+02 Score=24.32 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=24.7
Q ss_pred EEEEEEEecCCCCc--------eEEEEEecCCceEE---------EEEceeEEEecCCeEEEEEEEEEe
Q 044682 676 TITRRVKNVGTHNS--------SYEANVEGVDGVSV---------VVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 676 ~~~~tv~nv~~~~~--------~y~~~~~~~~g~~v---------~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
.++++|+|.++... .|.+.+..+.|-.| +---...++ ++||+++|+.++..
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l-~pGe~~~~~~~~~~ 70 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETL-EPGESLTYEETWDL 70 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEE-CCCCEEEEEEEECC
Confidence 45666777664332 33334444444333 222234567 89999999998887
No 94
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=40.92 E-value=1.4e+02 Score=25.38 Aligned_cols=50 Identities=8% Similarity=0.124 Sum_probs=32.7
Q ss_pred ceEEEEEEEEecCCCCceEEEEEecCCceEEEEEceeEEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVEGVDGVSVVVEPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
.+..+.+++.|.|....++++.-..-. .-.|..+++ ++|++.+..+.+..
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l~~ 67 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPLAA 67 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEeecC
Confidence 345789999999876766666542111 113566777 78888777776643
No 95
>PLN03080 Probable beta-xylosidase; Provisional
Probab=39.75 E-value=96 Score=37.95 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=34.0
Q ss_pred eEEEEEEEEecCCCCceEEEE--EecCCceEEEE------EceeEEEecCCeEEEEEEEEEe
Q 044682 674 SVTITRRVKNVGTHNSSYEAN--VEGVDGVSVVV------EPNNLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 674 ~~~~~~tv~nv~~~~~~y~~~--~~~~~g~~v~v------~p~~~~~~~~g~~~~~~v~~~~ 727 (755)
..+++++|||+|..+....+. +..|.+. +.. --.++.+ ++||++++++++..
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~-~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVV-PGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccC-CCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 478999999999866665554 3444321 111 1123456 78999999999875
No 96
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=38.77 E-value=1.5e+02 Score=26.07 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=26.7
Q ss_pred ceEEEEEEEEecCCCCc----eEEEEEecC---------CceEEEEEc-eeEEEecCCeEEEEEEE
Q 044682 673 ESVTITRRVKNVGTHNS----SYEANVEGV---------DGVSVVVEP-NNLSFTEYGEERTFKVT 724 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~----~y~~~~~~~---------~g~~v~v~p-~~~~~~~~g~~~~~~v~ 724 (755)
+..+++++|+|.|+.+- -|++--..+ .|..+.+.. ..+.| ++|+++++++.
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRF-EPG~~k~V~LV 81 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRF-EPGDTKEVELV 81 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE--TT-EEEEEEE
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEE-CCCCcEEEEEE
Confidence 67889999999998541 122110011 266666522 24677 78999887763
No 97
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=33.55 E-value=82 Score=27.69 Aligned_cols=50 Identities=28% Similarity=0.420 Sum_probs=31.6
Q ss_pred ceEEEEEEEEecCCCC----ceEEEEEecC---------CceEEEEEce--eEEEecCCeEEEEEEE
Q 044682 673 ESVTITRRVKNVGTHN----SSYEANVEGV---------DGVSVVVEPN--NLSFTEYGEERTFKVT 724 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~----~~y~~~~~~~---------~g~~v~v~p~--~~~~~~~g~~~~~~v~ 724 (755)
+..+++++|+|.|+.+ +-|++--..+ .|..+.+ |+ .+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEEE
Confidence 5677899999999753 2333311111 2666665 33 4678 78999888763
No 98
>PRK13203 ureB urease subunit beta; Reviewed
Probab=32.51 E-value=76 Score=27.89 Aligned_cols=50 Identities=26% Similarity=0.401 Sum_probs=31.4
Q ss_pred ceEEEEEEEEecCCCC----ceEEEEEe---------cCCceEEEEEce--eEEEecCCeEEEEEEE
Q 044682 673 ESVTITRRVKNVGTHN----SSYEANVE---------GVDGVSVVVEPN--NLSFTEYGEERTFKVT 724 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~----~~y~~~~~---------~~~g~~v~v~p~--~~~~~~~g~~~~~~v~ 724 (755)
+..+++++|+|.|+.+ +-|++--. ...|..+.+ |+ .+.| +||+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 5677899999999753 22333111 113555665 43 4678 78999888763
No 99
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.15 E-value=49 Score=23.86 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcc
Q 044682 556 AGLLKTLHPDWSPAAIKSAIMTTA 579 (755)
Q Consensus 556 aALl~q~~P~~sp~~ik~~L~~TA 579 (755)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999997653
No 100
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=30.40 E-value=94 Score=27.29 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=31.5
Q ss_pred ceEEEEEEEEecCCCC----ceEEEEEe---------cCCceEEEEEc-eeEEEecCCeEEEEEEE
Q 044682 673 ESVTITRRVKNVGTHN----SSYEANVE---------GVDGVSVVVEP-NNLSFTEYGEERTFKVT 724 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~----~~y~~~~~---------~~~g~~v~v~p-~~~~~~~~g~~~~~~v~ 724 (755)
+..+.+++|+|.|+.+ +-|++--. ...|..+.+.. ..+.| +||+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEEE
Confidence 5677899999999753 22333111 11355566521 24678 79999988763
No 101
>PRK15019 CsdA-binding activator; Provisional
Probab=29.91 E-value=48 Score=31.45 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=27.1
Q ss_pred eeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 044682 541 ACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKS 573 (755)
Q Consensus 541 ~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~ 573 (755)
.+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 57999999999999999999999876
No 102
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.45 E-value=54 Score=30.80 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=28.1
Q ss_pred eeeccccchhhhHHHHHHHHHhhCCCCCHHHHHHH
Q 044682 540 NACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSA 574 (755)
Q Consensus 540 ~~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~ 574 (755)
..+.|.| =|+.|-|++|||.+.+-+.+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3345666 589999999999999999999998743
No 103
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=27.76 E-value=28 Score=16.02 Aligned_cols=6 Identities=50% Similarity=0.711 Sum_probs=4.1
Q ss_pred cccCCC
Q 044682 492 FFSSRG 497 (755)
Q Consensus 492 ~fSS~G 497 (755)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 104
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.69 E-value=32 Score=30.08 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=7.1
Q ss_pred CCcchhhHHHHHH
Q 044682 1 MGVSNLYVLVLFS 13 (755)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (755)
|..|.++||.||+
T Consensus 1 MaSK~~llL~l~L 13 (95)
T PF07172_consen 1 MASKAFLLLGLLL 13 (95)
T ss_pred CchhHHHHHHHHH
Confidence 7755555544443
No 105
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.15 E-value=3.7e+02 Score=26.50 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=35.1
Q ss_pred ceEEEEEEEEecCCCCceEEEEEec----CCceEEEEEcee---EEEecCCeEEEEEEEEEe
Q 044682 673 ESVTITRRVKNVGTHNSSYEANVEG----VDGVSVVVEPNN---LSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~~~y~~~~~~----~~g~~v~v~p~~---~~~~~~g~~~~~~v~~~~ 727 (755)
...+++++|.|+|+ ..-|.+++.. +.++++.---.+ =++ ++|+..+..+++.+
T Consensus 38 ~~v~V~~~iyN~G~-~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i-~pg~~vsh~~vv~p 97 (181)
T PF05753_consen 38 EDVTVTYTIYNVGS-SAAYDVKLTDDSFPPEDFELVSGSLSASWERI-PPGENVSHSYVVRP 97 (181)
T ss_pred cEEEEEEEEEECCC-CeEEEEEEECCCCCccccEeccCceEEEEEEE-CCCCeEEEEEEEee
Confidence 57899999999997 5677787765 234443211111 133 78888888888887
No 106
>PRK13202 ureB urease subunit beta; Reviewed
Probab=26.98 E-value=99 Score=27.30 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=30.4
Q ss_pred EEEEEEEEecCCCC----ceEEEEEec---------CCceEEEEEc-eeEEEecCCeEEEEEEE
Q 044682 675 VTITRRVKNVGTHN----SSYEANVEG---------VDGVSVVVEP-NNLSFTEYGEERTFKVT 724 (755)
Q Consensus 675 ~~~~~tv~nv~~~~----~~y~~~~~~---------~~g~~v~v~p-~~~~~~~~g~~~~~~v~ 724 (755)
.+++++|+|.|+.+ +-|++--.. ..|..+.+.. ..+.| +||+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEEE
Confidence 67899999999753 233332111 1255566522 24678 78999888764
No 107
>PRK13205 ureB urease subunit beta; Reviewed
Probab=26.37 E-value=1.1e+02 Score=28.89 Aligned_cols=50 Identities=20% Similarity=0.295 Sum_probs=31.5
Q ss_pred ceEEEEEEEEecCCCC----ceEEEEEecC---------CceEEEEEce--eEEEecCCeEEEEEEE
Q 044682 673 ESVTITRRVKNVGTHN----SSYEANVEGV---------DGVSVVVEPN--NLSFTEYGEERTFKVT 724 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~----~~y~~~~~~~---------~g~~v~v~p~--~~~~~~~g~~~~~~v~ 724 (755)
+..+++++|+|.|+.+ +-|++--..+ .|..+.+ |+ .+.| +||+++++++.
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdI-PAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDI-PSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 5677999999999753 3344321111 2555655 33 4677 78888888764
No 108
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=26.14 E-value=2.5e+02 Score=25.09 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=42.8
Q ss_pred CCCeEEEEEeeecCCCCCCCCChhHHHHhhhhhhhCCCcEEEEcCCCCCCC---CCCchhhHHHHHHHHHHhc-CcEEEE
Q 044682 254 PRARLASYKSCWNVNGQPLDCRDSDILSAFDDAIHDGVDVLSVSLGEPSHK---NTEYFKDAIAIGSFHAMMH-GILVVA 329 (755)
Q Consensus 254 P~A~L~~~kv~~~~~~~~~~~~~~~i~~ai~~a~~~gvdVIn~SlG~~~~~---~~~~~~~~~~~~~~~a~~~-Gi~vV~ 329 (755)
++++|+.+--| .| |....++.-+++..+.|+|+|-+|-...... .-++. +.+... ..++ |+-||.
T Consensus 36 ~~~elvgf~~C--gG-----Cpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~-~~~~~~---I~~~~gi~VV~ 104 (107)
T PF08821_consen 36 EDVELVGFFTC--GG-----CPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHI-DEIKKI---IEEKFGIEVVE 104 (107)
T ss_pred CCeEEEEEeeC--CC-----CChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCH-HHHHHH---HHHHhCCCEee
Confidence 46777776444 43 9999999999999999999999987654311 12333 333333 3334 888775
No 109
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.82 E-value=59 Score=30.64 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHhhCCCCCHHHHH
Q 044682 549 TPHISGIAGLLKTLHPDWSPAAIK 572 (755)
Q Consensus 549 aP~VAG~aALl~q~~P~~sp~~ik 572 (755)
|+.|.|.+|++.+.+-..||++|.
T Consensus 80 A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 80 ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 689999999999999999999984
No 110
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=25.65 E-value=2.6e+02 Score=21.33 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=25.0
Q ss_pred CceEEEEEEEEecCCCCce-EEEEEecCCceEEEEEceeEEE
Q 044682 672 NESVTITRRVKNVGTHNSS-YEANVEGVDGVSVVVEPNNLSF 712 (755)
Q Consensus 672 ~~~~~~~~tv~nv~~~~~~-y~~~~~~~~g~~v~v~p~~~~~ 712 (755)
+...+++++++|.|....+ ..+.-..|.|+. +.|.++++
T Consensus 11 Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~--~v~~S~~~ 50 (53)
T TIGR01451 11 GDTITYTITVTNNGNVPATNVVVTDILPSGTT--FVSNSVTV 50 (53)
T ss_pred CCEEEEEEEEEECCCCceEeEEEEEcCCCCCE--EEeCcEEE
Confidence 4678899999999975443 333444577744 34666555
No 111
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=25.46 E-value=65 Score=30.24 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=27.1
Q ss_pred eeccccchhhhHHHHHHHHHhhCCCCCHHHHHH
Q 044682 541 ACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKS 573 (755)
Q Consensus 541 ~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~ 573 (755)
.+.|.| =|+.|-|.+||+.+.+-..||++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344556 68999999999999999999999864
No 112
>PRK13201 ureB urease subunit beta; Reviewed
Probab=25.11 E-value=1.2e+02 Score=27.95 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=31.1
Q ss_pred ceEEEEEEEEecCCCC----ceEEEEEecC---------CceEEEEEce--eEEEecCCeEEEEEEE
Q 044682 673 ESVTITRRVKNVGTHN----SSYEANVEGV---------DGVSVVVEPN--NLSFTEYGEERTFKVT 724 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~----~~y~~~~~~~---------~g~~v~v~p~--~~~~~~~g~~~~~~v~ 724 (755)
+..+++++|+|.|+.+ +-|++--..+ .|..+.+ |+ .+.| +||+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDI-PAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 5677899999999753 2333311111 2555655 33 4677 78999888764
No 113
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=24.67 E-value=58 Score=22.37 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=10.8
Q ss_pred chhhhHHHHHHHH
Q 044682 547 MSTPHISGIAGLL 559 (755)
Q Consensus 547 mAaP~VAG~aALl 559 (755)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998754
No 114
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=24.00 E-value=76 Score=29.21 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=26.1
Q ss_pred eeccccchhhhHHHHHHHHHhhCCCCCHHHHHHH
Q 044682 541 ACFGTSMSTPHISGIAGLLKTLHPDWSPAAIKSA 574 (755)
Q Consensus 541 ~~sGTSmAaP~VAG~aALl~q~~P~~sp~~ik~~ 574 (755)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4455554 67999999999999999999998653
No 115
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=23.90 E-value=5.8e+02 Score=23.51 Aligned_cols=19 Identities=16% Similarity=0.286 Sum_probs=15.1
Q ss_pred eEEEecCCeEEEEEEEEEe
Q 044682 709 NLSFTEYGEERTFKVTFTP 727 (755)
Q Consensus 709 ~~~~~~~g~~~~~~v~~~~ 727 (755)
+++-+.+|+.+.|.|.+.+
T Consensus 74 sVTWtapgqf~~f~vs~~~ 92 (124)
T cd08523 74 SVTWKAPSQEVRAKVSLRA 92 (124)
T ss_pred EEEEcCCCceEEEEEEeec
Confidence 3566678999999999886
No 116
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=23.08 E-value=1.9e+02 Score=23.54 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=20.7
Q ss_pred CceEEEEEEEEecCCCCce-EEEEEecCCceEE
Q 044682 672 NESVTITRRVKNVGTHNSS-YEANVEGVDGVSV 703 (755)
Q Consensus 672 ~~~~~~~~tv~nv~~~~~~-y~~~~~~~~g~~v 703 (755)
+...+++++|+|.|+.... ..+.-..|.|+.+
T Consensus 40 Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 40 GDTVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred CCEEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 3678899999999975422 3333344666553
No 117
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=22.55 E-value=71 Score=24.75 Aligned_cols=39 Identities=15% Similarity=0.156 Sum_probs=22.3
Q ss_pred CCeeeccccchhhhHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 044682 538 PFNACFGTSMSTPHISGIAG------LLKTLHPDWSPAAIKSAIM 576 (755)
Q Consensus 538 ~y~~~sGTSmAaP~VAG~aA------Ll~q~~P~~sp~~ik~~L~ 576 (755)
+--.+.||=+..=.|....+ -+.+.||.+++++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 33455666666555544432 2456799999999999884
No 118
>PRK13204 ureB urease subunit beta; Reviewed
Probab=22.15 E-value=1.4e+02 Score=28.23 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=31.7
Q ss_pred ceEEEEEEEEecCCCC----ceEEEEEecC---------CceEEEEEce--eEEEecCCeEEEEEEE
Q 044682 673 ESVTITRRVKNVGTHN----SSYEANVEGV---------DGVSVVVEPN--NLSFTEYGEERTFKVT 724 (755)
Q Consensus 673 ~~~~~~~tv~nv~~~~----~~y~~~~~~~---------~g~~v~v~p~--~~~~~~~g~~~~~~v~ 724 (755)
+..+++++|+|.|+.+ +-|.+--..+ .|..+.+ |+ .+.| ++|+++++++.
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 105 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDI-PANTAVRF-EPGDEKEVTLV 105 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeeEEEEE
Confidence 5677999999999753 2333311111 3555665 32 4678 78999888764
No 119
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=20.93 E-value=95 Score=24.52 Aligned_cols=44 Identities=30% Similarity=0.522 Sum_probs=22.1
Q ss_pred eEEEecCCeEEEEEEEEEeccCCCCCCCCCCeEEEEEEEECCCCCCC
Q 044682 709 NLSFTEYGEERTFKVTFTPERNVEPKPKAEKYIFGKLIWSDSDGLHH 755 (755)
Q Consensus 709 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 755 (755)
+++|+=.|+.-+-++||++.+... .. +..---.|.|+|..+-|+
T Consensus 15 Sitf~W~g~~t~atLtFePg~Glg--~~-n~~pVatl~W~DsaG~H~ 58 (68)
T PF09244_consen 15 SITFTWTGATTSATLTFEPGRGLG--VD-NTTPVATLAWTDSAGDHR 58 (68)
T ss_dssp EEEEEEE-SS-EEEEEE-GGGC-S--TT---S--EEEEEEETTEEEE
T ss_pred EEEEEEeccccEEEEEEccCcccC--cc-CCcceeEEEEeccCCCcc
Confidence 345543455566677888743111 11 222567899999988774
Done!