BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044683
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 102/200 (51%), Gaps = 19/200 (9%)
Query: 2 TSLKVLDASSNQLTGNISPNLCE--LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
SL LD SSN +G I PNLC+ L+ELY+ NN G IP + + + L+LS
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLS 423
Query: 60 RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG----- 114
N +G+IPSS + L+ L + N L GEIP+ + +LE L L N L G
Sbjct: 424 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSG 482
Query: 115 ---------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
+ LS+NRL G IP+W+G L L + + NN+ G IP E L LDL
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 166 SNNTIFGTLPSC-FRTSSFV 184
+ N GT+P+ F+ S +
Sbjct: 543 NTNLFNGTIPAAMFKQSGKI 562
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
T LK+L+ SSNQ G I P L L+ L + N G IP + L+LS N
Sbjct: 244 TELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 301
Query: 62 AFNGSIPSSF-------------------------FDMKMLKSLDISHNQLTGEIPERMA 96
F G++P F M+ LK LD+S N+ +GE+PE +
Sbjct: 302 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 361
Query: 97 TGCFSLEILALSNN----------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIM 140
SL L LS+N +LQ LYL +N G+IP L N L +
Sbjct: 362 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 421
Query: 141 MPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP 175
+ N L G IP L L L L N + G +P
Sbjct: 422 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 456
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 17/185 (9%)
Query: 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
LK L S N+++G++ + C V L L + +N+ IP L HL++S N
Sbjct: 177 LKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPFLGDCSALQ--HLDISGNKL 232
Query: 64 NGSIPSSFFDMKMLKSLDISHNQLTGEIPE---------RMATGCFSLEI---LALSNNS 111
+G + LK L+IS NQ G IP +A F+ EI L+ + ++
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 292
Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNNTI 170
L GL LS N +G +P + G+ LE + + +NN G +P++ ++ L +LDLS N
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 171 FGTLP 175
G LP
Sbjct: 353 SGELP 357
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 16 GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMK 75
G+ SP + L + N L G+IP EIG+ +FI LNL N +GSIP D++
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDISGSIPDEVGDLR 677
Query: 76 MLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG 114
L LD+S N+L G IP+ M+ EI LSNN+L G
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEI-DLSNNNLSG 715
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA 62
S+ LD S N L+G I + + L L + +ND+ G IP E+G + I L+LS N
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI-LDLSSNK 688
Query: 63 FNGSIPSSFFDMKMLKSLDISHNQLTGEIPE 93
+G IP + + ML +D+S+N L+G IPE
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 57 NLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLY 116
N++ + G +F + + LD+S+N L+G IP+ + + + L IL L +N + G
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISG-- 667
Query: 117 LSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
IP +G+L L + + +N L G IP L +LT +DLSNN + G +P
Sbjct: 668 --------SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Query: 177 CFRTSSF 183
+ +F
Sbjct: 720 MGQFETF 726
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 101/255 (39%), Gaps = 63/255 (24%)
Query: 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVE------------IGT 48
+ +L +L S+N +GNI L + L L ++ N G IP I
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 49 YLLVFIH---------------------------------LNLSRNAFNGSIPSSFFDMK 75
V+I N++ + G +F +
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 76 MLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG--------------LYLSDNR 121
+ LD+S+N L+G IP+ + + + L IL L +N + G L LS N+
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 122 LFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN-TIFGT-LPSCFR 179
L GRIP+ + L L +I + NNNL GPIP E Q E NN + G LP C
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNNPGLCGYPLPRCDP 747
Query: 180 TSSFVKKQDRRTVGK 194
+++ +R+ G+
Sbjct: 748 SNADGYAHHQRSHGR 762
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 93/233 (39%), Gaps = 58/233 (24%)
Query: 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPV---------------- 44
++ L+ L N L G I L + L L +D NDL G IP
Sbjct: 438 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 45 ----EIGTYLLVFIH---LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERM-- 95
EI ++ + L LS N+F+G+IP+ D + L LD++ N G IP M
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Query: 96 ATGCFSLEILA------LSNNSL-------------QGLYLSD-NRLFGRIP-----RWL 130
+G + +A + N+ + QG+ NRL R P R
Sbjct: 558 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 617
Query: 131 G--------NLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP 175
G N ++ + M N L G IP E + L IL+L +N I G++P
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 58 LSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATG-CFSLEILALSN------- 109
LS + NGS+ S F L SLD+S N L+G + + G C L+ L +S+
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 110 --------NSLQGLYLSDNRLFG-RIPRWL--GNLLALEDIMMPNNNLQGPIPIEFCQLE 158
NSL+ L LS N + G + W+ L+ + + N + G + + C
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-- 197
Query: 159 LLTILDLSNNTIFGTLP 175
L LD+S+N +P
Sbjct: 198 NLEFLDVSSNNFSTGIP 214
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 102/200 (51%), Gaps = 19/200 (9%)
Query: 2 TSLKVLDASSNQLTGNISPNLCE--LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLS 59
SL LD SSN +G I PNLC+ L+ELY+ NN G IP + + + L+LS
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLS 426
Query: 60 RNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG----- 114
N +G+IPSS + L+ L + N L GEIP+ + +LE L L N L G
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSG 485
Query: 115 ---------LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165
+ LS+NRL G IP+W+G L L + + NN+ G IP E L LDL
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 166 SNNTIFGTLPSC-FRTSSFV 184
+ N GT+P+ F+ S +
Sbjct: 546 NTNLFNGTIPAAMFKQSGKI 565
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 89/215 (41%), Gaps = 43/215 (20%)
Query: 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61
T LK+L+ SSNQ G I P L L+ L + N G IP + L+LS N
Sbjct: 247 TELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304
Query: 62 AFNGSIPSSF-------------------------FDMKMLKSLDISHNQLTGEIPERMA 96
F G++P F M+ LK LD+S N+ +GE+PE +
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364
Query: 97 TGCFSLEILALSNN----------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIM 140
SL L LS+N +LQ LYL +N G+IP L N L +
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424
Query: 141 MPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP 175
+ N L G IP L L L L N + G +P
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 17/185 (9%)
Query: 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63
LK L S N+++G++ + C V L L + +N+ IP L HL++S N
Sbjct: 180 LKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPFLGDCSALQ--HLDISGNKL 235
Query: 64 NGSIPSSFFDMKMLKSLDISHNQLTGEIPE---------RMATGCFSLEI---LALSNNS 111
+G + LK L+IS NQ G IP +A F+ EI L+ + ++
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDT 295
Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNNTI 170
L GL LS N +G +P + G+ LE + + +NN G +P++ ++ L +LDLS N
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 171 FGTLP 175
G LP
Sbjct: 356 SGELP 360
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 16 GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMK 75
G+ SP + L + N L G+IP EIG+ +FI LNL N +GSIP D++
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDISGSIPDEVGDLR 680
Query: 76 MLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG 114
L LD+S N+L G IP+ M+ EI LSNN+L G
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEI-DLSNNNLSG 718
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA 62
S+ LD S N L+G I + + L L + +ND+ G IP E+G + I L+LS N
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI-LDLSSNK 691
Query: 63 FNGSIPSSFFDMKMLKSLDISHNQLTGEIPE 93
+G IP + + ML +D+S+N L+G IPE
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 57 NLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLY 116
N++ + G +F + + LD+S+N L+G IP+ + + + L IL L +N + G
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISG-- 670
Query: 117 LSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
IP +G+L L + + +N L G IP L +LT +DLSNN + G +P
Sbjct: 671 --------SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Query: 177 CFRTSSF 183
+ +F
Sbjct: 723 MGQFETF 729
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 88/227 (38%), Gaps = 61/227 (26%)
Query: 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVE------------IGT 48
+ +L +L S+N +GNI L + L L ++ N G IP I
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 49 YLLVFIH---------------------------------LNLSRNAFNGSIPSSFFDMK 75
V+I N++ + G +F +
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 76 MLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG--------------LYLSDNR 121
+ LD+S+N L+G IP+ + + + L IL L +N + G L LS N+
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPY-LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 122 LFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168
L GRIP+ + L L +I + NNNL GPIP E Q E NN
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETFPPAKFLNN 737
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 93/233 (39%), Gaps = 58/233 (24%)
Query: 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPV---------------- 44
++ L+ L N L G I L + L L +D NDL G IP
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 45 ----EIGTYLLVFIH---LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERM-- 95
EI ++ + L LS N+F+G+IP+ D + L LD++ N G IP M
Sbjct: 501 RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Query: 96 ATGCFSLEILA------LSNNSL-------------QGLYLSD-NRLFGRIP-----RWL 130
+G + +A + N+ + QG+ NRL R P R
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620
Query: 131 G--------NLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP 175
G N ++ + M N L G IP E + L IL+L +N I G++P
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 58 LSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATG-CFSLEILALSN------- 109
LS + NGS+ S F L SLD+S N L+G + + G C L+ L +S+
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 110 --------NSLQGLYLSDNRLFG-RIPRWL--GNLLALEDIMMPNNNLQGPIPIEFCQLE 158
NSL+ L LS N + G + W+ L+ + + N + G + + C
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV-- 200
Query: 159 LLTILDLSNNTIFGTLP 175
L LD+S+N +P
Sbjct: 201 NLEFLDVSSNNFSTGIP 217
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
+ +L LD S N L+G + P++ L L + D N + G IP G++ +F + +SR
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 61 NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATG-------------CFSLEILAL 107
N G IP +F ++ L +D+S N L G+ + F L + L
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSN 167
S N L GL L +NR++G +P+ L L L + + NNL G IP + L+ + +N
Sbjct: 243 SKN-LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300
Query: 168 NTIF--GTLPSC 177
N LP+C
Sbjct: 301 NKCLCGSPLPAC 312
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 18 ISPNLCELVLLRELYIDN-NDLRGHIPVEIGT----YLLVFIHLNLSRNAFNGSIPSSFF 72
I +L L L LYI N+L G IP I + L H N+S G+IP
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-----GAIPDFLS 122
Query: 73 DMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGN 132
+K L +LD S+N L+G +P I +L N L G+ NR+ G IP G+
Sbjct: 123 QIKTLVTLDFSYNALSGTLPP---------SISSLPN--LVGITFDGNRISGAIPDSYGS 171
Query: 133 LLAL-EDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKK 186
L + + N L G IP F L L +DLS N + G F + +K
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 18/204 (8%)
Query: 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFN 64
K LD SN+L+ S L LR LY+++N L+ +P I L L ++ N
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 65 GSIPSSFFDMKM-LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL-------- 115
++P FD + L L + NQL +P R+ L L+L N LQ L
Sbjct: 99 -ALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 116 -YLSDNRLFG----RIPR-WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT 169
L + RL+ R+P L L+ + + NN L+ F LE L +L L N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
Query: 170 IFGTLPSCFRTSSFVKKQDRRTVG 193
T + ++KK+ +G
Sbjct: 217 WDCTCNGIIYMAKWLKKKADEGLG 240
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 73 DMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG------------LYLSDN 120
+M L++LD+S N L +R S+ +L LS+N L G L L +N
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN 460
Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT 180
R+ IP+ + +L AL+++ + +N L+ F +L L + L +N T P
Sbjct: 461 RIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYL 519
Query: 181 SSFVKKQDRRTVGKPCGSLGLD 202
S ++ K V GS+ D
Sbjct: 520 SEWINKHS-GVVRNSAGSVAPD 540
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
+T+L L + NQL + +L L+EL + N L+ +P + L +LNL+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAH 142
Query: 61 NAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
N S+P FD + L LD+S+NQL +PE + L+ L L N L+ +
Sbjct: 143 NQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSV 196
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 24 ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFD-MKMLKSLDI 82
EL L +LY+ N L+ +P + L +LNLS N S+P+ FD + LK L +
Sbjct: 50 ELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107
Query: 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
+ NQL +P+ + L+ L L N L+ +
Sbjct: 108 NTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSV 139
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNG-SIPSSFFDMKMLKSLDISHNQ 86
+R Y+D DLR +E + + + + A ++ + ++ LD+SHN+
Sbjct: 417 MRAAYLD--DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474
Query: 87 LTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146
L P A C LE+L S+N+L+ + D + NL L+++++ NN L
Sbjct: 475 LRALPPALAALRC--LEVLQASDNALENV---DG---------VANLPRLQELLLCNNRL 520
Query: 147 QGPIPIE-FCQLELLTILDLSNNTI 170
Q I+ L +L+L N++
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 18/145 (12%)
Query: 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNG-SIPSSFFDMKMLKSLDISHNQ 86
+R Y+D DLR +E + + + + A ++ + ++ LD+SHN+
Sbjct: 417 MRAAYLD--DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNR 474
Query: 87 LTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146
L P A C LE+L S+N+L+ + D + NL L+++++ NN L
Sbjct: 475 LRALPPALAALRC--LEVLQASDNALENV---DG---------VANLPRLQELLLCNNRL 520
Query: 147 QGPIPIE-FCQLELLTILDLSNNTI 170
Q I+ L +L+L N++
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSL 545
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 56 LNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGL 115
LNL++N + +F + L+ LD+ N++ ++ + G ++ + LS N L
Sbjct: 386 LNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQL 445
Query: 116 YLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170
S L + R + +AL+++ + P F L LTILDLSNN I
Sbjct: 446 STSSFALVPSLQRLMLRRVALKNVDIS--------PSPFRPLRNLTILDLSNNNI 492
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 36/180 (20%)
Query: 2 TSLKVLDASSNQLTGNISPNLCELV-LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
+ L +LDA N ++ + P LC+++ LL+ L + +N+L I + + L+L
Sbjct: 49 SQLAILDAGFNSISK-LEPELCQILPLLKVLNLQHNEL-SQISDQTFVFCTNLTELDLMS 106
Query: 61 NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
N+ + + F + K L LD+SHN L+ ++ TG + L + L L
Sbjct: 107 NSIHKIKSNPFKNQKNLIKLDLSHNGLSST---KLGTGVQLENLQELLLAKNKILALRSE 163
Query: 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT 180
L EF L LDLS+N + P CF+T
Sbjct: 164 EL------------------------------EFLGNSSLRKLDLSSNPLKEFSPGCFQT 193
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 68 PSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDN 120
PS F ++ L LD+S+N + I E + G +LEIL +N+L L+ N
Sbjct: 473 PSPFRPLRNLTILDLSNNNI-ANINEDLLEGLENLEILDFQHNNLARLWKRAN 524
>pdb|2V9K|A Chain A, Crystal Structure Of Human Pus10, A Novel Pseudouridine
Synthase
Length = 530
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 32 YIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFN 64
Y+D + R H+ + GTY+ F+H + R N
Sbjct: 469 YVDEHHFRLHLKTQAGTYIKEFVHGDFGRTKPN 501
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR 60
+T L VLD +NQLT S LV L+EL++ N L +P I L HL L +
Sbjct: 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQ 144
Query: 61 NAFNGSIPSSFFD 73
N SIP FD
Sbjct: 145 NQLK-SIPHGAFD 156
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 113 QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNNTIF 171
Q LYL DN++ P +L+ L+++ + +N L G +P+ F L LT+LDL N +
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL- 100
Query: 172 GTLPS 176
LPS
Sbjct: 101 TVLPS 105
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 37 DLRGHIPVEIGTYLLVFI-HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERM 95
D RG EI T L I + L +N P +F K L+ +D+S+NQ++ P+
Sbjct: 17 DCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 96 ATGCFSLEILALSNNSLQGL 115
G SL L L N + L
Sbjct: 77 Q-GLRSLNSLVLYGNKITEL 95
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 37 DLRGHIPVEIGTYLLVFI-HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERM 95
D RG EI T L I + L +N P +F K L+ +D+S+NQ++ P+
Sbjct: 17 DCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76
Query: 96 ATGCFSLEILALSNNSLQGL 115
G SL L L N + L
Sbjct: 77 Q-GLRSLNSLVLYGNKITEL 95
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 20 PNLCELVLLRELYIDNNDLR----GHIPVEIGTYLLVFIHLNLS---RNAFNGSIPSSFF 72
PNL LV L EL + N L G L +H ++ RNAF+
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFD-------- 223
Query: 73 DMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN 110
D+K L+ L++SHN L +P + T LE + L++N
Sbjct: 224 DLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 20 PNLCELVLLRELYIDNNDLR----GHIPVEIGTYLLVFIHLNLS---RNAFNGSIPSSFF 72
PNL LV L EL + N L G L +H ++ RNAF+
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFD-------- 223
Query: 73 DMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN 110
D+K L+ L++SHN L +P + T LE + L++N
Sbjct: 224 DLKSLEELNLSHNNLMS-LPHDLFTPLHRLERVHLNHN 260
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 7 LDASSNQLTGNISPNLCE-LVLLRELYIDNNDLRGHIPVEIGTYLLVFIH----LNLSRN 61
L+ NQLTG I PN E ++EL + N ++ EI + + +H LNL N
Sbjct: 59 LELKRNQLTG-IEPNAFEGASHIQELQLGENKIK-----EISNKMFLGLHQLKTLNLYDN 112
Query: 62 AFNGSIPSSFFDMKMLKSLDISHN 85
+ +P SF + L SL+++ N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 4 LKVLDASSNQLTGNISP-NLCELVLLRELYIDNNDLRGHIPVEIGTYLL----VFIHLNL 58
L+ LD S N ++ P L L L++D L+ E+G L +L L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-----ELGPGLFRGLAALQYLYL 136
Query: 59 SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLS 118
NA +F D+ L L + N+++ +PER G SL+ L L N + ++
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 119 DNRLFGRI 126
R GR+
Sbjct: 196 AFRDLGRL 203
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 31 LYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSI-PSSFFDMKMLKSLDISHNQLTG 89
L++ +N L I T L + L+LS NA S+ P++F + L +L + L
Sbjct: 61 LWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 118
Query: 90 EIPERMATGCFSLEILALSNNSLQGL--------------YLSDNRLFGRIPRWLGNLLA 135
E+ + G +L+ L L +N+LQ L +L NR+ R L +
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 136 LEDIMMPNNNLQGPIPIEFCQL-ELLTILDLSNN 168
L+ +++ N + P F L L+T+ +NN
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 18/154 (11%)
Query: 31 LYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSI-PSSFFDMKMLKSLDISHNQLTG 89
L++ +N L I T L + L+LS NA S+ P++F + L +L + L
Sbjct: 60 LWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 117
Query: 90 EIPERMATGCFSLEILALSNNSLQGL--------------YLSDNRLFGRIPRWLGNLLA 135
E+ + G +L+ L L +N+LQ L +L NR+ R L +
Sbjct: 118 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 177
Query: 136 LEDIMMPNNNLQGPIPIEFCQL-ELLTILDLSNN 168
L+ +++ N + P F L L+T+ +NN
Sbjct: 178 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 211
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 11/128 (8%)
Query: 4 LKVLDASSNQLTGNISP-NLCELVLLRELYIDNNDLRGHIPVEIGTYLL----VFIHLNL 58
L+ LD S N ++ P L L L++D L+ E+G L +L L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-----ELGPGLFRGLAALQYLYL 135
Query: 59 SRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLS 118
NA +F D+ L L + N+++ +PER G SL+ L L N + ++
Sbjct: 136 QDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 119 DNRLFGRI 126
R GR+
Sbjct: 195 AFRDLGRL 202
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
L +L +D +L +++ L V L+LS N S+P + L LD+S N+L
Sbjct: 57 LTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 88 TGEIPERMATGCFSLEILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146
T SL + AL LQ LYL N L P L LE + + NNNL
Sbjct: 113 T------------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCF 178
LE L L L N+++ T+P F
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 66 SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------------S 111
SIPS +KSLD+S N++T I C +L++L L ++ S
Sbjct: 19 SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
L+ L LSDN L W G L +L+ + + N Q
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 17/96 (17%)
Query: 66 SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------------S 111
SIPS +KSLD+S N++T I C +L++L L ++ S
Sbjct: 45 SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 101
Query: 112 LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
L+ L LSDN L W G L +L+ + + N Q
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 21/118 (17%)
Query: 71 FFDMKMLKSLDISHNQLTGE------IPERMATGCFSLEILALSNNSLQGLYLSDNRLFG 124
F+D+ + SL ++T E +P + SLE L LS N + YL ++ G
Sbjct: 325 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 384
Query: 125 RIPRWLGNLLALEDIMMPNNNLQ-----GPIPIEFCQLELLTILDLSNNTIFGTLPSC 177
P +L+ +++ N+L+ G I L+ LT LD+S NT SC
Sbjct: 385 AWP-------SLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDISRNTFHPMPDSC 432
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
L +L +D +L +++ L V L+LS N S+P + L LD+S N+L
Sbjct: 57 LTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 88 TGEIPERMATGCFSLEILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146
T SL + AL LQ LYL N L P L LE + + NNNL
Sbjct: 113 T------------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCF 178
LE L L L N+++ T+P F
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 44 VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103
+++ L V L+LS N S+P + L LD+S N+LT SL
Sbjct: 71 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT------------SLP 117
Query: 104 ILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
+ AL LQ LYL N L P L LE + + NNNL LE L
Sbjct: 118 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 177
Query: 163 LDLSNNTIFGTLPSCF 178
L L N+++ T+P F
Sbjct: 178 LLLQENSLY-TIPKGF 192
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 18/152 (11%)
Query: 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
L +L +D +L +++ L V L+LS N S+P + L LD+S N+L
Sbjct: 57 LTQLNLDRAEL---TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 88 TGEIPERMATGCFSLEILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146
T SL + AL LQ LYL N L P L LE + + NNNL
Sbjct: 113 T------------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Query: 147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCF 178
LE L L L N+++ T+P F
Sbjct: 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 44 VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103
+++ L V L+LS N S+P + L LD+S N+LT SL
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT------------SLP 116
Query: 104 ILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
+ AL LQ LYL N L P L LE + + NNNL LE L
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176
Query: 163 LDLSNNTIFGTLPSCF 178
L L N+++ T+P F
Sbjct: 177 LLLQENSLY-TIPKGF 191
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 45/145 (31%)
Query: 17 NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKM 76
NIS N+ + L LY++ N L +P EI NLS
Sbjct: 238 NISANIFKYDFLTRLYLNGNSL-TELPAEIK---------NLSN---------------- 271
Query: 77 LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLAL 136
L+ LD+SHN+LT +P + + CF L+ Y DN + +P GNL L
Sbjct: 272 LRVLDLSHNRLTS-LPAELGS-CFQLKY----------FYFFDN-MVTTLPWEFGNLCNL 318
Query: 137 EDIMMPNNNLQGPIPIEFCQLELLT 161
+ + + N P+E L++LT
Sbjct: 319 QFLGVEGN------PLEKQFLKILT 337
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 18/108 (16%)
Query: 77 LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG-----------LYLSDNRLFGR 125
LK L +SHNQ++ P + T LE L+++ N L+ L+L +N L R
Sbjct: 65 LKELHLSHNQISDLSPLKDLT---KLEELSVNRNRLKNLNGIPSACLSRLFLDNNEL--R 119
Query: 126 IPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173
L +L LE + + NN L+ + + F L L +LDL N I T
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGF--LSKLEVLDLHGNEITNT 165
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL 87
LR L + +N L+ IP+ + T L L++S N + F D+ LKSL++ N L
Sbjct: 82 LRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 88 TGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP-RWLGNLLALEDIMMPNNNL 146
I R +G SLE L L +L IP L +L L + + + N+
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLTS-----------IPTEALSHLHGLIVLRLRHLNI 188
Query: 147 QGPIPIEFCQLELLTILDLSNNTIFGTL-PSCF 178
F +L L +L++S+ T+ P+C
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221
>pdb|1ECL|A Chain A, Amino Terminal 67kda Domain Of Escherichia Coli Dna
Topoisomerase I (Residues 2-590 Of Mature Protein)
Cloning Artifact Adds Two Residues To The Amino-Terminus
Which Were Not Observed In The Experimental Electron
Density (Gly-2, Ser-1)
Length = 597
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 124 GRIPR---WLGNLLAL----EDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
GRI R W + AL ED ++P N + + LT+++L+ F P+
Sbjct: 426 GRILRFDGWTKVMPALRKGDEDRILPAVN----------KGDALTLVELTPAQHFTKPPA 475
Query: 177 CFRTSSFVKKQDRRTVGKPC 196
F +S VK+ ++R +G+P
Sbjct: 476 RFSEASLVKELEKRGIGRPS 495
>pdb|1CY1|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptpt
pdb|1CY2|A Chain A, Complex Of E.Coli Dna Topoisomerase I With Tptptp3'
pdb|1CY6|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 3' Thymidine
Monophosphate
pdb|1CY7|A Chain A, Complex Of E.coli Dna Topoisomerase I With 5'-thymidine
Monophosphate
pdb|1CY8|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'-Thymidine
Monophosphate And 3'-Thymidine Monophosphate
pdb|1CY0|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 3'-5'-Adenosine
Diphosphate
pdb|1CY4|A Chain A, Complex Of E.Coli Dna Topoisomerase I With 5'ptptptp3'
Length = 599
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 124 GRIPR---WLGNLLAL----EDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
GRI R W + AL ED ++P N + + LT+++L+ F P+
Sbjct: 428 GRILRFDGWTKVMPALRKGDEDRILPAVN----------KGDALTLVELTPAQHFTKPPA 477
Query: 177 CFRTSSFVKKQDRRTVGKPC 196
F +S VK+ ++R +G+P
Sbjct: 478 RFSEASLVKELEKRGIGRPS 497
>pdb|3PWT|A Chain A, Crystal Structure Of Mutant E.Coli Topoisomerase Ia
Length = 596
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 124 GRIPR---WLGNLLAL----EDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
GRI R W + AL ED ++P N + + LT+++L+ F P+
Sbjct: 426 GRILRFDGWTKVMPALRKGDEDRILPAVN----------KGDALTLVELTPAQHFTKPPA 475
Query: 177 CFRTSSFVKKQDRRTVGKPC 196
F +S VK+ ++R +G+P
Sbjct: 476 RFSEASLVKELEKRGIGRPS 495
>pdb|3PX7|A Chain A, Crystal Structure Of Covalent Complex Of Topoisomerase 1a
With Substrate
Length = 595
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 124 GRIPR---WLGNLLAL----EDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
GRI R W + AL ED ++P N + + LT+++L+ F P+
Sbjct: 426 GRILRFDGWTKVMPALRKGDEDRILPAVN----------KGDALTLVELTPAQHFTKPPA 475
Query: 177 CFRTSSFVKKQDRRTVGKPC 196
F +S VK+ ++R +G+P
Sbjct: 476 RFSEASLVKELEKRGIGRPS 495
>pdb|1MW8|X Chain X, Crystal Structure Of A Complex Between H365r Mutant Of 67
Kda N-Terminal Fragment Of E. Coli Dna Topoisomerase I
And 5'-Acttcgggatg-3'
pdb|1MW9|X Chain X, Crystal Structure Of H365r Mutant Of 67 Kda N-Terminal
Fragment Of E. Coli Dna Topoisomerase I
Length = 592
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 124 GRIPR---WLGNLLAL----EDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPS 176
GRI R W + AL ED ++P N + + LT+++L+ F P+
Sbjct: 426 GRILRFDGWTKVMPALRKGDEDRILPAVN----------KGDALTLVELTPAQHFTKPPA 475
Query: 177 CFRTSSFVKKQDRRTVGKPC 196
F +S VK+ ++R +G+P
Sbjct: 476 RFSEASLVKELEKRGIGRPS 495
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 44 VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103
+++ L V L+LS N S+P + L LD+S N+LT SL
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT------------SLP 116
Query: 104 ILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
+ AL LQ LYL N L P L LE + + NN+L LE L
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDT 176
Query: 163 LDLSNNTIFGTLPSCF 178
L L N+++ T+P F
Sbjct: 177 LLLQENSLY-TIPKGF 191
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 54 IHLNLSRNAFNGSIPSSFFD-MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSL 112
+ LNLS+N F GSI S F+ + L+ LD+S+N + + ++ G +L+ LAL N L
Sbjct: 326 LKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQL 383
Query: 113 QGL 115
+ +
Sbjct: 384 KSV 386
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 44 VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103
+++ L V L+LS N S+P + L LD+S N+LT SL
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT------------SLP 116
Query: 104 ILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
+ AL LQ LYL N L P L LE + + NN L LE L
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDT 176
Query: 163 LDLSNNTIFGTLPSCF 178
L L N+++ T+P F
Sbjct: 177 LLLQENSLY-TIPKGF 191
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 44 VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103
+++ L V L+LS N S+P + L LD+S N+LT SL
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT------------SLP 116
Query: 104 ILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
+ AL LQ LYL N L P L LE + + NN L LE L
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDT 176
Query: 163 LDLSNNTIFGTLPSCF 178
L L N+++ T+P F
Sbjct: 177 LLLQENSLY-TIPKGF 191
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 56 LNLSRN--AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
L+LSRN +F G S F LK LD+S N + + G LE L +++L+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLK 409
Query: 114 GL-------------YLSDNRLFGRIP--RWLGNLLALEDIMMPNNNLQGP-IPIEFCQL 157
+ YL + R+ L +LE + M N+ Q +P F +L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 158 ELLTILDLSNNTIFGTLPSCFRTSS 182
LT LDLS + P+ F + S
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLS 494
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 21/135 (15%)
Query: 53 FIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLT--GEIPERMATGCFSLEILALSNN 110
F+HL+ S N ++ + + L++L + NQL +I E M T SL+ L +S N
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE-MTTQMKSLQQLDISQN 384
Query: 111 SLQ---------------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC 155
S+ L +S N L I R L + + D+ ++N IP +
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDL---HSNKIKSIPKQVV 441
Query: 156 QLELLTILDLSNNTI 170
+LE L L++++N +
Sbjct: 442 KLEALQELNVASNQL 456
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 56 LNLSRN--AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQ 113
L+LSRN +F G S F LK LD+S N + + G LE L +++L+
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLK 409
Query: 114 GL-------------YLSDNRLFGRIP--RWLGNLLALEDIMMPNNNLQGP-IPIEFCQL 157
+ YL + R+ L +LE + M N+ Q +P F +L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 158 ELLTILDLSNNTIFGTLPSCFRTSS 182
LT LDLS + P+ F + S
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLS 494
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 44 VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103
+++ L V L+LS N S+P + L LD+S N+LT SL
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT------------SLP 116
Query: 104 ILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
+ AL LQ LYL N L P L LE + + NN L LE L
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDT 176
Query: 163 LDLSNNTIFGTLPSCF 178
L L N+++ T+P F
Sbjct: 177 LLLQENSLY-TIPKGF 191
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 44 VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103
+++ L V L+LS N S+P + L LD+S N+LT SL
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT------------SLP 116
Query: 104 ILALSN-NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162
+ AL LQ LYL N L P L LE + + NN L LE L
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDT 176
Query: 163 LDLSNNTIFGTLPSCF 178
L L N+++ T+P F
Sbjct: 177 LLLQENSLY-TIPKGF 191
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 62/153 (40%), Gaps = 15/153 (9%)
Query: 3 SLKVLDASSNQLTGNISPNLCELVL-----LRELYIDNNDL-RGHIP--VEIGTYLLVFI 54
SLK L +SN+L + LCE +L L L+I L P + T +
Sbjct: 281 SLKELSLASNELKDEGARLLCESLLEPGCQLESLWIKTCSLTAASCPYFCSVLTKSRSLL 340
Query: 55 HLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQG 114
L +S N K L D +L + +GC SL + L+N SL+
Sbjct: 341 ELQMSSNPLGDEGVQELC--KALSQPDTVLRELWLGDCDVTNSGCSSLANVLLANRSLRE 398
Query: 115 LYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147
L LS+N + G G L LE + P+ LQ
Sbjct: 399 LDLSNNCMGGP-----GVLQLLESLKQPSCTLQ 426
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.143 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,765,406
Number of Sequences: 62578
Number of extensions: 263318
Number of successful extensions: 718
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 164
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)