Query 044683
Match_columns 247
No_of_seqs 198 out of 2994
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:44:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044683.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044683hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 8E-28 1.7E-32 223.2 18.0 237 2-240 140-434 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.5E-27 3.2E-32 221.4 18.0 235 1-239 117-385 (968)
3 KOG4194 Membrane glycoprotein 99.9 7.2E-26 1.6E-30 188.3 2.4 187 4-192 127-354 (873)
4 KOG4194 Membrane glycoprotein 99.9 6.6E-25 1.4E-29 182.6 2.7 191 3-195 174-381 (873)
5 KOG0444 Cytoskeletal regulator 99.9 9.4E-24 2E-28 177.5 -0.6 230 2-239 78-344 (1255)
6 KOG0444 Cytoskeletal regulator 99.8 6.1E-23 1.3E-27 172.7 -1.8 221 2-238 55-295 (1255)
7 KOG0472 Leucine-rich repeat pr 99.8 1.7E-22 3.7E-27 161.7 -3.6 102 127-240 428-534 (565)
8 PRK15370 E3 ubiquitin-protein 99.7 5.2E-18 1.1E-22 151.0 10.1 190 3-223 200-401 (754)
9 KOG0472 Leucine-rich repeat pr 99.7 3.3E-20 7.2E-25 148.7 -3.5 215 4-239 47-302 (565)
10 PLN03210 Resistant to P. syrin 99.7 6.2E-17 1.3E-21 152.1 17.3 228 2-236 611-895 (1153)
11 KOG0617 Ras suppressor protein 99.7 2.6E-20 5.6E-25 133.5 -5.3 151 4-171 35-186 (264)
12 PRK15387 E3 ubiquitin-protein 99.7 4.4E-17 9.6E-22 144.6 12.8 70 159-230 383-465 (788)
13 KOG4237 Extracellular matrix p 99.7 4.9E-19 1.1E-23 141.6 0.1 226 4-240 69-352 (498)
14 KOG4237 Extracellular matrix p 99.7 4.3E-19 9.4E-24 141.9 -1.6 108 1-110 90-198 (498)
15 PRK15387 E3 ubiquitin-protein 99.7 3.8E-17 8.3E-22 145.0 10.0 209 3-240 223-451 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 2.7E-16 5.8E-21 140.2 13.4 196 3-230 179-386 (754)
17 KOG0618 Serine/threonine phosp 99.7 8.9E-19 1.9E-23 152.9 -3.5 218 3-235 242-501 (1081)
18 KOG0617 Ras suppressor protein 99.7 2.7E-18 5.8E-23 123.2 -2.5 159 22-196 29-190 (264)
19 PLN03210 Resistant to P. syrin 99.7 3.8E-15 8.1E-20 140.2 16.9 225 3-239 590-874 (1153)
20 cd00116 LRR_RI Leucine-rich re 99.6 3.8E-16 8.3E-21 127.9 6.1 216 3-225 24-293 (319)
21 KOG0618 Serine/threonine phosp 99.6 7.2E-17 1.6E-21 141.2 -4.4 178 6-190 291-487 (1081)
22 cd00116 LRR_RI Leucine-rich re 99.5 1.1E-14 2.4E-19 119.3 5.2 215 2-222 51-319 (319)
23 KOG0532 Leucine-rich repeat (L 99.4 2.2E-14 4.8E-19 120.1 -3.2 166 6-192 79-247 (722)
24 PF14580 LRR_9: Leucine-rich r 99.3 1.4E-12 2.9E-17 96.5 5.7 130 22-165 15-147 (175)
25 COG4886 Leucine-rich repeat (L 99.3 7.8E-12 1.7E-16 105.5 7.8 167 7-192 98-268 (394)
26 KOG0532 Leucine-rich repeat (L 99.3 1.6E-13 3.4E-18 115.1 -2.6 177 25-231 74-254 (722)
27 PLN03150 hypothetical protein; 99.3 1.9E-11 4.1E-16 108.4 9.1 91 4-95 420-510 (623)
28 COG4886 Leucine-rich repeat (L 99.3 1E-11 2.2E-16 104.8 6.9 152 2-171 116-268 (394)
29 KOG1909 Ran GTPase-activating 99.2 5.7E-12 1.2E-16 100.0 1.3 215 2-222 30-310 (382)
30 PF14580 LRR_9: Leucine-rich r 99.1 4.1E-11 8.9E-16 88.6 4.6 126 3-142 20-148 (175)
31 KOG3207 Beta-tubulin folding c 99.1 3.1E-11 6.7E-16 98.5 2.7 145 25-171 120-284 (505)
32 PLN03150 hypothetical protein; 99.1 9E-10 2E-14 97.8 10.1 103 77-190 420-526 (623)
33 KOG1259 Nischarin, modulator o 99.0 4.7E-11 1E-15 93.5 0.4 135 21-173 279-414 (490)
34 PF13855 LRR_8: Leucine rich r 99.0 2E-10 4.4E-15 70.2 3.1 57 28-85 3-59 (61)
35 PF13855 LRR_8: Leucine rich r 99.0 2.5E-10 5.5E-15 69.8 3.4 61 2-63 1-61 (61)
36 KOG1259 Nischarin, modulator o 99.0 8.7E-11 1.9E-15 92.0 -0.2 128 50-194 283-414 (490)
37 KOG3207 Beta-tubulin folding c 98.9 2.2E-10 4.9E-15 93.6 1.3 170 2-171 121-314 (505)
38 KOG1909 Ran GTPase-activating 98.9 8.7E-10 1.9E-14 87.8 2.7 185 2-192 92-311 (382)
39 KOG0531 Protein phosphatase 1, 98.7 2.3E-09 5E-14 91.0 -0.9 101 5-113 75-175 (414)
40 COG5238 RNA1 Ran GTPase-activa 98.7 2.2E-08 4.9E-13 77.6 4.5 219 1-224 29-317 (388)
41 KOG0531 Protein phosphatase 1, 98.6 7.2E-09 1.6E-13 88.0 0.7 161 1-171 94-268 (414)
42 KOG1644 U2-associated snRNP A' 98.5 1.3E-07 2.8E-12 70.3 4.2 127 28-168 21-150 (233)
43 KOG1859 Leucine-rich repeat pr 98.5 3E-09 6.5E-14 92.3 -5.6 105 50-170 186-291 (1096)
44 KOG4658 Apoptotic ATPase [Sign 98.4 1.6E-07 3.5E-12 85.9 4.3 105 3-110 546-652 (889)
45 KOG1859 Leucine-rich repeat pr 98.4 1.4E-08 3.1E-13 88.3 -3.1 155 19-192 102-292 (1096)
46 KOG4579 Leucine-rich repeat (L 98.4 3.4E-08 7.4E-13 68.9 -0.7 131 52-196 28-163 (177)
47 KOG2120 SCF ubiquitin ligase, 98.4 2.3E-08 4.9E-13 78.5 -2.2 149 27-177 186-355 (419)
48 KOG2982 Uncharacterized conser 98.3 4.1E-07 8.9E-12 71.6 3.1 100 25-124 70-170 (418)
49 KOG4579 Leucine-rich repeat (L 98.3 1.2E-07 2.6E-12 66.2 -0.9 103 6-113 31-136 (177)
50 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4.2E-11 48.5 3.6 36 52-88 2-37 (44)
51 PF12799 LRR_4: Leucine Rich r 98.2 1.2E-06 2.7E-11 49.3 2.7 37 134-171 1-37 (44)
52 KOG4658 Apoptotic ATPase [Sign 98.1 6.3E-06 1.4E-10 75.8 6.1 126 4-144 525-652 (889)
53 KOG1644 U2-associated snRNP A' 98.1 7.2E-06 1.6E-10 61.1 5.1 108 27-145 43-151 (233)
54 KOG3665 ZYG-1-like serine/thre 97.9 1E-05 2.2E-10 72.6 4.0 134 26-171 122-263 (699)
55 KOG2120 SCF ubiquitin ligase, 97.9 1.9E-06 4.1E-11 68.0 -1.3 161 4-167 187-372 (419)
56 PF13306 LRR_5: Leucine rich r 97.8 8.2E-05 1.8E-09 52.4 6.5 124 19-160 5-128 (129)
57 KOG2982 Uncharacterized conser 97.8 1.9E-05 4.2E-10 62.4 3.3 167 3-171 72-262 (418)
58 COG5238 RNA1 Ran GTPase-activa 97.8 6.2E-05 1.3E-09 58.9 5.9 79 114-192 218-316 (388)
59 PRK15386 type III secretion pr 97.8 0.00011 2.4E-09 61.5 7.3 55 24-85 50-104 (426)
60 KOG3665 ZYG-1-like serine/thre 97.5 3.4E-05 7.4E-10 69.3 1.3 141 3-150 123-266 (699)
61 PRK15386 type III secretion pr 97.5 0.00061 1.3E-08 57.2 7.8 71 2-87 52-124 (426)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00036 7.8E-09 49.0 5.3 101 2-109 12-112 (129)
63 KOG2739 Leucine-rich acidic nu 97.3 0.0002 4.4E-09 55.5 2.6 112 18-141 35-150 (260)
64 KOG2739 Leucine-rich acidic nu 97.2 0.00016 3.5E-09 56.1 1.7 104 50-165 42-150 (260)
65 KOG2123 Uncharacterized conser 97.2 3.6E-05 7.8E-10 60.4 -2.3 99 52-164 20-123 (388)
66 KOG2123 Uncharacterized conser 97.0 8.2E-05 1.8E-09 58.4 -1.4 98 3-106 20-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.9 0.00048 1E-08 32.4 1.1 22 211-233 1-22 (22)
68 PF00560 LRR_1: Leucine Rich R 95.9 0.0033 7.2E-08 29.4 0.8 12 4-15 2-13 (22)
69 KOG4308 LRR-containing protein 95.6 0.00013 2.8E-09 62.9 -8.4 168 4-171 89-303 (478)
70 KOG1947 Leucine rich repeat pr 95.4 0.0085 1.8E-07 51.8 1.8 61 50-110 242-305 (482)
71 smart00369 LRR_TYP Leucine-ric 94.4 0.035 7.7E-07 26.9 1.8 20 27-47 3-22 (26)
72 smart00370 LRR Leucine-rich re 94.4 0.035 7.7E-07 26.9 1.8 20 27-47 3-22 (26)
73 smart00370 LRR Leucine-rich re 94.3 0.046 1E-06 26.5 2.2 21 75-96 2-22 (26)
74 smart00369 LRR_TYP Leucine-ric 94.3 0.046 1E-06 26.5 2.2 21 75-96 2-22 (26)
75 PF13504 LRR_7: Leucine rich r 94.2 0.036 7.9E-07 24.0 1.4 11 53-63 3-13 (17)
76 KOG1947 Leucine rich repeat pr 92.9 0.06 1.3E-06 46.5 1.9 63 24-86 241-306 (482)
77 KOG4308 LRR-containing protein 92.9 0.00071 1.5E-08 58.4 -9.8 186 28-224 89-304 (478)
78 KOG3864 Uncharacterized conser 92.7 0.015 3.3E-07 43.7 -1.7 79 27-107 102-183 (221)
79 KOG0473 Leucine-rich repeat pr 92.5 0.0035 7.7E-08 48.2 -5.4 84 22-110 38-121 (326)
80 PF13516 LRR_6: Leucine Rich r 92.0 0.036 7.9E-07 26.3 -0.3 15 2-16 2-16 (24)
81 KOG0473 Leucine-rich repeat pr 87.7 0.017 3.7E-07 44.6 -5.2 82 3-88 43-124 (326)
82 KOG3864 Uncharacterized conser 86.7 0.2 4.3E-06 37.9 -0.0 35 52-86 102-136 (221)
83 smart00365 LRR_SD22 Leucine-ri 81.8 1.4 3E-05 21.4 1.7 14 158-171 2-15 (26)
84 smart00368 LRR_RI Leucine rich 81.1 1.4 3E-05 21.7 1.7 14 158-171 2-15 (28)
85 KOG4341 F-box protein containi 76.6 0.97 2.1E-05 38.2 0.4 140 24-168 292-436 (483)
86 smart00364 LRR_BAC Leucine-ric 74.6 2.1 4.6E-05 20.8 1.2 17 76-93 3-19 (26)
87 KOG4341 F-box protein containi 61.6 6.5 0.00014 33.5 2.2 153 2-163 294-457 (483)
88 KOG3763 mRNA export factor TAP 60.3 8.3 0.00018 34.0 2.7 61 25-88 217-283 (585)
89 smart00367 LRR_CC Leucine-rich 53.8 9.4 0.0002 18.1 1.2 12 1-12 1-12 (26)
90 KOG3763 mRNA export factor TAP 49.7 9.7 0.00021 33.6 1.5 12 136-147 272-283 (585)
91 TIGR00864 PCC polycystin catio 37.5 20 0.00043 38.0 1.7 32 8-39 1-32 (2740)
92 TIGR00864 PCC polycystin catio 30.4 39 0.00084 36.1 2.4 33 116-148 1-33 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=8e-28 Score=223.16 Aligned_cols=237 Identities=32% Similarity=0.450 Sum_probs=129.2
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+.+..|..++.+++|++|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh-CcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 45566666666665555666666666666666666655555555544 55566666655555555555555555555555
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCC--------------c------------------------cEEEccCCcCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNS--------------L------------------------QGLYLSDNRLF 123 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l------------------------~~l~l~~n~~~ 123 (247)
+++|.+.+.+|..+. .+++|+.|++++|. + +.|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 555555544444433 24555555554442 2 24445555554
Q ss_pred CCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-
Q 044683 124 GRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL- 199 (247)
Q Consensus 124 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~- 199 (247)
+.+|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..|..+.. ...|++++|.+++.+|..+
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 445555555555555555555555555555555555555555555555555544332 2256666666665554432
Q ss_pred ------eeee--------ecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 200 ------GLDI--------LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 200 ------~l~l--------~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
.+++ +|.++.. +|+.|++++|++++.+|..+..+++|+.++
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 1121 4555554 677777777777766666666666555443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=1.5e-27 Score=221.44 Aligned_cols=235 Identities=33% Similarity=0.480 Sum_probs=195.6
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++..|. ..+++|++|++++|.+++.+|..+.. +++|++|++++|.+.+..|..+..+++|++|
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred CCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhc-CCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 46899999999999987775 45889999999999999888888876 8999999999999988899999999999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 146 (247)
++++|.+.+.+|..+. .+++|+.+++++|. ++.|++++|.+.+.+|..++.+++|++|++++|.+
T Consensus 194 ~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 194 TLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred eccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 9999999878887765 49999999999884 55899999999999999999999999999999999
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-------eeee--------ecchh
Q 044683 147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLF 208 (247)
Q Consensus 147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~ 208 (247)
++.+|..+..+++|++|++++|.+++..|..+.. ...|++++|.+++..|..+ .+++ +|.++
T Consensus 273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence 9888989999999999999999998888876643 3388888888887766543 2322 56666
Q ss_pred cC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683 209 RR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL 239 (247)
Q Consensus 209 ~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 239 (247)
.. +|+.|++++|++++.+|..++.+++|+.+
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L 385 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEE
Confidence 55 77777777777777777666655555443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=7.2e-26 Score=188.34 Aligned_cols=187 Identities=28% Similarity=0.290 Sum_probs=117.7
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
++.|+|.+|.|+.+-.+.+..++.|+.|||+.|.|+ ++|..-+..-.++++|++++|+|+......|..+.+|.+|.++
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 555666666666555556666666666666666666 5555444323456666666666665555666666666666666
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCcc--------------------------------------EEEccCCcCCCC
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQ--------------------------------------GLYLSDNRLFGR 125 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--------------------------------------~l~l~~n~~~~~ 125 (247)
.|+++ .+|..+|..+++|+.|++..|.++ .++++.|++...
T Consensus 206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 66666 666666666666666666666332 566666666655
Q ss_pred CchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC---eEeccCCccc
Q 044683 126 IPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS---FVKKQDRRTV 192 (247)
Q Consensus 126 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~l~~n~~~ 192 (247)
-..++..++.|++|++++|.|..+.++++..+++|++|++++|+|+...+..|...+ .|.|++|+++
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID 354 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH
Confidence 556666677777777777777766667777777777777777777655555554322 4555555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=6.6e-25 Score=182.65 Aligned_cols=191 Identities=21% Similarity=0.176 Sum_probs=130.1
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
++++|+|+.|.|+..-.+.|.++..|..|.|+.|+++ .+|...|+.+++|+.|++..|++.-.-...|.++++|+.+.+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 3566666666666555666666666666666666666 666666655666666666666665333455666666666666
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCcc--------------EEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ--------------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--------------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
..|.+. .+.++.|-.+..++++++..|+++ .|+++.|.|....++.|.-+++|+.|+|+.|.++.
T Consensus 253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 666666 666666667788888888888544 67888888887777888888888888888888886
Q ss_pred cCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccC
Q 044683 149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKP 195 (247)
Q Consensus 149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~ 195 (247)
..+.+|..+..|++|++++|.++......|... +.|||++|.++..+
T Consensus 332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 666777777777777777777764444444433 27777777766543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=9.4e-24 Score=177.52 Aligned_cols=230 Identities=26% Similarity=0.301 Sum_probs=127.1
Q ss_pred CCCcEEEccCCcccc-ccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLTG-NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+.||.+++.+|.+.. -+|..+..+..|+.|++++|++. ++|..+.. -+++..|++++|.|..+.-..|.++..|-+|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~IetIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIETIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence 455666666665532 34566666666677777777666 66666654 4566666666666663322344556666666
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCC-CCCchhhhcccCcCeeeCcCCc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLF-GRIPRWLGNLLALEDIMMPNNN 145 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~ 145 (247)
|+++|++. .+|..+.+ +.+|+.|.+++|. ++.|.+++.+-+ ..+|.++..+.+|..++++.|.
T Consensus 156 DLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 66666665 66666554 6666666666662 224444443322 2445555555566666666666
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcc--------------eeee--ecc
Q 044683 146 LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSL--------------GLDI--LPH 206 (247)
Q Consensus 146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~--------------~l~l--~p~ 206 (247)
+. ..|+.+.++++|+-|++++|.|+ ....+.. ....|++|.|+++. +|..+ .|++ +|.
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCcc
Confidence 55 55566666666666666666655 2222211 12255555555552 22221 1111 555
Q ss_pred hhcC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683 207 LFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL 239 (247)
Q Consensus 207 ~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 239 (247)
.++. .|..+..++|.+. .+|+.+|.|..|+.|
T Consensus 311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 5555 5666666666654 566666666655554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=6.1e-23 Score=172.69 Aligned_cols=221 Identities=28% Similarity=0.344 Sum_probs=165.4
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceee-cCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRG-HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
.+|++|.+++|.+. .+-..+..++.|+.+++++|++.. -+|..+|+ +..|..||+++|.+. ..|..+....++-.|
T Consensus 55 qkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKNSIVL 131 (1255)
T ss_pred hhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcCcEEE
Confidence 35778888888877 455667778888888888888763 57888888 889999999999998 788888888899999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCc-------------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCccc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSL-------------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ 147 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l-------------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 147 (247)
++++|.|. .||...+-.+..|-.|++++|++ ++|++++|.+...--..+..+++|++|.+++.+-+
T Consensus 132 NLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 99999998 89998888888888999999854 47778887776544455566677777888776554
Q ss_pred -ccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCe
Q 044683 148 -GPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFD 221 (247)
Q Consensus 148 -~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~ 221 (247)
..+|.++..+.+|+.+|++.|.+. .+|.++... ..|+||+|.++..-.. ... ++.+|++|.|+
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~----------~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT----------EGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeecc----------HHHHhhhhhhccccch
Confidence 347888889999999999999998 888877533 3999999998842111 111 45555555555
Q ss_pred eeecCCccccCCCchhh
Q 044683 222 LVLELPQIVCGLPTCFA 238 (247)
Q Consensus 222 l~~~~~~~~~~l~~L~~ 238 (247)
++ ..|.++|.++.|+.
T Consensus 280 Lt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 280 LT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred hc-cchHHHhhhHHHHH
Confidence 55 34555555544443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.7e-22 Score=161.71 Aligned_cols=102 Identities=25% Similarity=0.312 Sum_probs=55.0
Q ss_pred chhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC---eEeccCCcccccCCCcceeee
Q 044683 127 PRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS---FVKKQDRRTVGKPCGSLGLDI 203 (247)
Q Consensus 127 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~l~~n~~~~~~~~~~~l~l 203 (247)
|..++.++++..|++++|.+. .+|..++.+..|+++|++.|++. ..|.+..... .+-.++|++....
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd-------- 497 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVD-------- 497 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccC--------
Confidence 333444444444555544444 34444444444555555555444 3443333222 2223334443322
Q ss_pred ecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 204 LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 204 ~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
|+.+.. +|..||+.+|.+. .+|..+++|.+|+.|.
T Consensus 498 -~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLe 534 (565)
T KOG0472|consen 498 -PSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLE 534 (565)
T ss_pred -hHHhhhhhhcceeccCCCchh-hCChhhccccceeEEE
Confidence 222555 8999999999887 6888899988887763
No 8
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=5.2e-18 Score=150.98 Aligned_cols=190 Identities=25% Similarity=0.362 Sum_probs=113.5
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
.++.|++++|.++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 4666777777666 3444443 36777777777776 6665543 35777777777776 4555543 46777777
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCcc-----------EEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ-----------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP 151 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-----------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 151 (247)
++|.++ .+|..+. ++|+.|++++|.++ .|++++|.++. +|..+ .++|+.|++++|.++ .+|
T Consensus 270 s~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP 341 (754)
T PRK15370 270 FHNKIS-CLPENLP---EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLP 341 (754)
T ss_pred cCCccC-ccccccC---CCCcEEECCCCccccCcccchhhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCC
Confidence 777776 5665432 36777777777554 34455666553 33322 246777777777776 345
Q ss_pred hhhhCCCCCCEEEccCCcCcCCCCCCC-CCCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeee
Q 044683 152 IEFCQLELLTILDLSNNTIFGTLPSCF-RTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLV 223 (247)
Q Consensus 152 ~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~ 223 (247)
..+ .++|+.|++++|+++ .+|..+ .....|++++|.+++ +|. .+...|+.|++++|+++
T Consensus 342 ~~l--~~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~Lt~-LP~---------~l~~sL~~LdLs~N~L~ 401 (754)
T PRK15370 342 ASL--PPELQVLDVSKNQIT-VLPETLPPTITTLDVSRNALTN-LPE---------NLPAALQIMQASRNNLV 401 (754)
T ss_pred hhh--cCcccEEECCCCCCC-cCChhhcCCcCEEECCCCcCCC-CCH---------hHHHHHHHHhhccCCcc
Confidence 444 257777777777776 344433 244477777777764 222 22224555556666555
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=3.3e-20 Score=148.71 Aligned_cols=215 Identities=29% Similarity=0.403 Sum_probs=111.9
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
+..+.+++|.++ ...+.+..+..+.++++++|++. ..|+.++. +..++.++.+.|++. .+|...+.+.++..++.+
T Consensus 47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 344555666555 34444555666666666666665 66666655 555666666666655 455556666666666666
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCcc-------------EEEccCCcCCC----------------------CCch
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQ-------------GLYLSDNRLFG----------------------RIPR 128 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~-------------~l~l~~n~~~~----------------------~~~~ 128 (247)
+|.+. .++.++++ +..+..++..+|+++ .+++.+|.+.. .+|.
T Consensus 123 ~n~~~-el~~~i~~-~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~ 200 (565)
T KOG0472|consen 123 SNELK-ELPDSIGR-LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPP 200 (565)
T ss_pred cccee-ecCchHHH-HhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCCh
Confidence 66665 55555554 555555555555333 23344444432 3344
Q ss_pred hhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCC-CC---CCeEeccCCcccccCCCcceeeee
Q 044683 129 WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCF-RT---SSFVKKQDRRTVGKPCGSLGLDIL 204 (247)
Q Consensus 129 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~---~~~L~l~~n~~~~~~~~~~~l~l~ 204 (247)
.++.+.+|+.|++..|++. ..| .|.++..|.+|.++.|.|. .+|... .. ...||+.+|+++. +
T Consensus 201 ~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke----------~ 267 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE----------V 267 (565)
T ss_pred hhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc----------C
Confidence 4444444444444444444 333 3344444444444444444 222111 11 1155666666554 2
Q ss_pred cchhcC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683 205 PHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL 239 (247)
Q Consensus 205 p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 239 (247)
|+.+-- +|.+||+|+|.+++ .|-+++++ .|+.+
T Consensus 268 Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFL 302 (565)
T ss_pred chHHHHhhhhhhhcccCCcccc-CCcccccc-eeeeh
Confidence 332222 67788888888874 56667776 44443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=6.2e-17 Score=152.14 Aligned_cols=228 Identities=19% Similarity=0.195 Sum_probs=154.4
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
.+|+.|+++++.+. .++..+..+++|+.++++++.....+|. +.. +++|++|++++|.....+|..+..+++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~-l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM-ATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-ccc-CCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 46778888888877 5677777888888999887654336664 333 78899999988765557888888899999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCC-----------CccEEEccCCcCCCCCchhh--------------------
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNN-----------SLQGLYLSDNRLFGRIPRWL-------------------- 130 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n-----------~l~~l~l~~n~~~~~~~~~~-------------------- 130 (247)
+++|.....+|..+ .+++|+.|++++| +++.|++.+|.+.. +|..+
T Consensus 688 L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~ 764 (1153)
T PLN03210 688 MSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWE 764 (1153)
T ss_pred CCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc-ccccccccccccccccccchhhccc
Confidence 98864333777654 4778888888776 45677777777652 33221
Q ss_pred ----------hcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC--CCCeEeccCCcccccCCCc
Q 044683 131 ----------GNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR--TSSFVKKQDRRTVGKPCGS 198 (247)
Q Consensus 131 ----------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~l~~n~~~~~~~~~ 198 (247)
...++|+.|++++|.....+|..++++++|+.|++++|..-+.+|.... ....|++++|..-..+|..
T Consensus 765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc
Confidence 1124678888888877667888888999999999988754445565442 3337777776543333321
Q ss_pred c----eeee-------ecchhcC--CCceEeccCC-eeeecCCccccCCCch
Q 044683 199 L----GLDI-------LPHLFRR--RPRRLAVEGF-DLVLELPQIVCGLPTC 236 (247)
Q Consensus 199 ~----~l~l-------~p~~~~~--~L~~L~l~~n-~l~~~~~~~~~~l~~L 236 (247)
. .|++ +|.++.. +|+.|++++| +++ .+|..++.+++|
T Consensus 845 ~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L 895 (1153)
T PLN03210 845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHL 895 (1153)
T ss_pred ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCC
Confidence 1 2222 6666666 7888888875 555 355544444444
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=2.6e-20 Score=133.50 Aligned_cols=151 Identities=29% Similarity=0.453 Sum_probs=74.6
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
++.|.+++|.++ ..|+.++.+.+|++|++.+|+++ ++|..+.. ++.|+.|.++-|++. ..|..|+.+|.|+.||+.
T Consensus 35 ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 334444444444 34444444444555555555444 44444444 444444444444444 444444444445444444
Q ss_pred CCcccc-cCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683 84 HNQLTG-EIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162 (247)
Q Consensus 84 ~n~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 162 (247)
+|.+.. .+|..+|- +..|+.+.+++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.+..|++
T Consensus 111 ynnl~e~~lpgnff~-m~tlralyl~dndfe-----------~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre 177 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFY-MTTLRALYLGDNDFE-----------ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE 177 (264)
T ss_pred ccccccccCCcchhH-HHHHHHHHhcCCCcc-----------cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence 444431 23333332 333443333333332 34555666666666666666655 45555666666666
Q ss_pred EEccCCcCc
Q 044683 163 LDLSNNTIF 171 (247)
Q Consensus 163 L~l~~n~l~ 171 (247)
|.+++|+++
T Consensus 178 lhiqgnrl~ 186 (264)
T KOG0617|consen 178 LHIQGNRLT 186 (264)
T ss_pred Hhcccceee
Confidence 666666666
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.73 E-value=4.4e-17 Score=144.64 Aligned_cols=70 Identities=20% Similarity=0.114 Sum_probs=34.6
Q ss_pred CCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc----eeee-------ecchhcC--CCceEeccCCeeeec
Q 044683 159 LLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL----GLDI-------LPHLFRR--RPRRLAVEGFDLVLE 225 (247)
Q Consensus 159 ~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~----~l~l-------~p~~~~~--~L~~L~l~~n~l~~~ 225 (247)
+|+.|++++|.++ .+|........|++++|.+++ +|... .+++ +|..+.. .++.|++++|++++.
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVLPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred ccceEEecCCccc-CCCCcccCCCEEEccCCcCCC-CCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence 4555666666665 233333334466666666654 23211 1111 4544444 555666666666555
Q ss_pred CCccc
Q 044683 226 LPQIV 230 (247)
Q Consensus 226 ~~~~~ 230 (247)
.+..+
T Consensus 461 ~~~~L 465 (788)
T PRK15387 461 TLQAL 465 (788)
T ss_pred HHHHH
Confidence 55444
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=4.9e-19 Score=141.60 Aligned_cols=226 Identities=20% Similarity=0.170 Sum_probs=133.1
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccC-CccccCChHhhhcCCCCCEEec
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSR-NAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l 82 (247)
.++++|..|.|+...+.+|..+++|++|+|++|.|+ .|.+..|++++++.+|.+.+ |+|+.....+|+.+..++.|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456777777777666777777777777777777777 66666666677766655444 7777555556667777776666
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCcc--------------EEEccCCcC--------------------------
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ--------------GLYLSDNRL-------------------------- 122 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--------------~l~l~~n~~-------------------------- 122 (247)
.-|.+. -++...+..++++..|.+.+|.++ .+.+..|.+
T Consensus 148 Nan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 148 NANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred Chhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 666666 566666666666666666666333 223333321
Q ss_pred ----------CCCCchhhhc-ccCcCeeeCcCCcccccCc-hhhhCCCCCCEEEccCCcCcCCCCCCCCCCC---eEecc
Q 044683 123 ----------FGRIPRWLGN-LLALEDIMMPNNNLQGPIP-IEFCQLELLTILDLSNNTIFGTLPSCFRTSS---FVKKQ 187 (247)
Q Consensus 123 ----------~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~L~l~ 187 (247)
....+..+.. +..+..-..+.+...++.| ..|..+++|+.|++++|++++..+..|.... .|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 0000111100 0011110111111222222 4577788888888888888877777775433 67777
Q ss_pred CCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 188 DRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 188 ~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
.|++...-..- |.. .|+.|+|.+|+|+...|..|..+.+|..+.
T Consensus 307 ~N~l~~v~~~~---------f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~ 352 (498)
T KOG4237|consen 307 RNKLEFVSSGM---------FQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLN 352 (498)
T ss_pred cchHHHHHHHh---------hhccccceeeeecCCeeEEEecccccccceeeeee
Confidence 77765321111 222 788888888888877777777766665553
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=4.3e-19 Score=141.91 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=97.2
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccC-CceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDN-NDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS 79 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 79 (247)
+++||+|||++|.|+.+.|++|.+++.+..|-+.+ |+|+ .+|+..|.++.+++.|.+.-|++......+|..++++..
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 46799999999999999999999999998877766 9998 999999999999999999999999888899999999999
Q ss_pred EeccCCcccccCchhHhhcCCCccEEEccCC
Q 044683 80 LDISHNQLTGEIPERMATGCFSLEILALSNN 110 (247)
Q Consensus 80 L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 110 (247)
|.+.+|.+. .++...+..+.+++.+.+..|
T Consensus 169 LslyDn~~q-~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 169 LSLYDNKIQ-SICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hcccchhhh-hhccccccchhccchHhhhcC
Confidence 999999998 888877777777877777666
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=3.8e-17 Score=145.04 Aligned_cols=209 Identities=26% Similarity=0.273 Sum_probs=151.6
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+|+.|++++|.++. +|.. .++|++|++++|.++ .+|.. +++|+.|++++|.++ .+|..+ .+|+.|++
T Consensus 223 ~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLT-HLPALP---SGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceeeccCCchh-hhhhch---hhcCEEEC
Confidence 57889999998884 5542 478899999999988 77752 457888888888877 456643 45777788
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCc----------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCch
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSL----------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPI 152 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l----------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 152 (247)
++|.++ .+|.. .++|+.|++++|.+ +.|++++|.+++ +|.. ..+|+.|++++|+++ .+|.
T Consensus 290 s~N~Lt-~LP~~----p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls-~LP~ 359 (788)
T PRK15387 290 FGNQLT-SLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLA-SLPT 359 (788)
T ss_pred cCCccc-ccccc----ccccceeECCCCccccCCCCcccccccccccCcccc-cccc---ccccceEecCCCccC-CCCC
Confidence 888888 67772 45777888877744 367888888874 4532 247899999999998 4554
Q ss_pred hhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCC--cc-eeee-------ecchhcCCCceEeccCCee
Q 044683 153 EFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCG--SL-GLDI-------LPHLFRRRPRRLAVEGFDL 222 (247)
Q Consensus 153 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~--~~-~l~l-------~p~~~~~~L~~L~l~~n~l 222 (247)
... +|+.|++++|.++ .+|........|++++|.+++..+. .+ .|++ +|.... +|+.|++++|++
T Consensus 360 lp~---~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l~~-~L~~L~Ls~NqL 434 (788)
T PRK15387 360 LPS---ELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPS-GLLSLSVYRNQL 434 (788)
T ss_pred CCc---ccceehhhccccc-cCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcchh-hhhhhhhccCcc
Confidence 443 5677889999999 4666777788899999999884321 11 3333 554333 788899999999
Q ss_pred eecCCccccCCCchhhhh
Q 044683 223 VLELPQIVCGLPTCFALG 240 (247)
Q Consensus 223 ~~~~~~~~~~l~~L~~l~ 240 (247)
+ .+|..++++++|+.++
T Consensus 435 t-~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 435 T-RLPESLIHLSSETTVN 451 (788)
T ss_pred c-ccChHHhhccCCCeEE
Confidence 8 5788888888887665
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=2.7e-16 Score=140.18 Aligned_cols=196 Identities=22% Similarity=0.317 Sum_probs=143.3
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+.+.|+++++.++ .+|..+. +.++.|++++|.++ .+|..++ .+|++|++++|.++ .+|..+. .+|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 4578999999988 5666554 47999999999999 8888765 48999999999998 5676553 47999999
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCc-----------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSL-----------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP 151 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l-----------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 151 (247)
++|.+. .+|..+. .+|+.|++++|.+ +.|++++|++++ +|..+. ++|+.|++++|.++ .+|
T Consensus 249 s~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP 320 (754)
T PRK15370 249 SINRIT-ELPERLP---SALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALP 320 (754)
T ss_pred cCCccC-cCChhHh---CCCCEEECcCCccCccccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCC
Confidence 999998 8888664 4788888888754 467777777763 444332 36777788888777 344
Q ss_pred hhhhCCCCCCEEEccCCcCcCCCCCCC-CCCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccc
Q 044683 152 IEFCQLELLTILDLSNNTIFGTLPSCF-RTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIV 230 (247)
Q Consensus 152 ~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~ 230 (247)
..+ .++|+.|++++|.+++ +|..+ .....|++++|+++. +|. .+...|+.|++++|+++. +|..+
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~L~~-LP~---------~lp~~L~~LdLs~N~Lt~-LP~~l 386 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLPPELQVLDVSKNQITV-LPE---------TLPPTITTLDVSRNALTN-LPENL 386 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhcCcccEEECCCCCCCc-CCh---------hhcCCcCEEECCCCcCCC-CCHhH
Confidence 433 3578888888888874 44433 344588888888773 332 222289999999999985 55544
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=8.9e-19 Score=152.94 Aligned_cols=218 Identities=24% Similarity=0.318 Sum_probs=134.0
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+|+++++++|.++ ..|+++..+.+|+.+...+|.++ .+|..++. +.+|+.+.+..|.+. .+|....+...|++|++
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 4778888888888 45688888889999999999887 88888877 778888888888888 66777777889999999
Q ss_pred cCCcccccCchhHhhcCCC-ccEEEccCC--------------------------------------CccEEEccCCcCC
Q 044683 83 SHNQLTGEIPERMATGCFS-LEILALSNN--------------------------------------SLQGLYLSDNRLF 123 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~-L~~l~l~~n--------------------------------------~l~~l~l~~n~~~ 123 (247)
..|.+. .+|...+..... +..+..+.| .|+.|+|++|++.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 999987 777755542222 333333333 2224444454444
Q ss_pred CCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC--CCCeEeccCCcccccCCCccee
Q 044683 124 GRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR--TSSFVKKQDRRTVGKPCGSLGL 201 (247)
Q Consensus 124 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~l~~n~~~~~~~~~~~l 201 (247)
......+.++..|+.|++++|+++ .+|+.+..++.|++|...+|++. ..|.... ..+.+|++.|.++...
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~~------ 468 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEVT------ 468 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhhh------
Confidence 333334444445555555555554 34444455555555555555554 3332221 2226677766665321
Q ss_pred eeecchhcC-CCceEeccCCeeeecCCccccCCCc
Q 044683 202 DILPHLFRR-RPRRLAVEGFDLVLELPQIVCGLPT 235 (247)
Q Consensus 202 ~l~p~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~ 235 (247)
+|..... +|++||+++|.=....-+.|..+..
T Consensus 469 --l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~ 501 (1081)
T KOG0618|consen 469 --LPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKS 501 (1081)
T ss_pred --hhhhCCCcccceeeccCCcccccchhhhHHhhh
Confidence 3444444 8899999988422233334443333
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.7e-18 Score=123.22 Aligned_cols=159 Identities=25% Similarity=0.391 Sum_probs=135.1
Q ss_pred ccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCC
Q 044683 22 LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS 101 (247)
Q Consensus 22 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 101 (247)
+..+..++.|.+++|+++ .+|+.+.. +.+|+.|.+++|.++ .+|..+..+++|+.|+++-|++. .+|.++.. +|.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs-~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS-FPA 103 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC-Cch
Confidence 445778889999999999 99999987 899999999999999 78999999999999999999998 88988765 999
Q ss_pred ccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC-
Q 044683 102 LEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT- 180 (247)
Q Consensus 102 L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~- 180 (247)
|+.+++.+|++.+= .+|..|..+..|+.|++++|.+. .+|...+++++|+.|.+++|++- ..|..+..
T Consensus 104 levldltynnl~e~---------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~l 172 (264)
T KOG0617|consen 104 LEVLDLTYNNLNEN---------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL 172 (264)
T ss_pred hhhhhccccccccc---------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHH
Confidence 99999999888643 45777788889999999999998 88888999999999999999987 55655442
Q ss_pred --CCeEeccCCcccccCC
Q 044683 181 --SSFVKKQDRRTVGKPC 196 (247)
Q Consensus 181 --~~~L~l~~n~~~~~~~ 196 (247)
...|.+++|+++-.+|
T Consensus 173 t~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPP 190 (264)
T ss_pred HHHHHHhcccceeeecCh
Confidence 2277888888774333
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.66 E-value=3.8e-15 Score=140.23 Aligned_cols=225 Identities=19% Similarity=0.191 Sum_probs=147.4
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
.|+.|++.++.+. ..|..| ...+|+.|++.++.+. .++..+.. +++|+.++++++.....+|. +..+++|++|++
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~-l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHS-LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccccc-CCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 3556666666555 455555 3567777888887776 67666654 77888888877654335553 667788888888
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCC-------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNN-------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP 149 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n-------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 149 (247)
++|.....+|..+. .+++|+.|++++| .|+.|++++|.....+|.. ..+|+.|++++|.+. .
T Consensus 665 ~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~ 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-E 739 (1153)
T ss_pred cCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-c
Confidence 87654346776654 3778888888765 3456777776544444432 356788888888776 3
Q ss_pred Cchhh------------------------------hCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCC
Q 044683 150 IPIEF------------------------------CQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPC 196 (247)
Q Consensus 150 ~~~~l------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~ 196 (247)
+|..+ ...++|+.|++++|.....+|..+... ..|++++|..-+.+|
T Consensus 740 lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 740 FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeC
Confidence 44321 113578888888887776788766533 389999986544555
Q ss_pred Ccc------eeee--------ecchhcCCCceEeccCCeeeecCCccccCCCchhhh
Q 044683 197 GSL------GLDI--------LPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFAL 239 (247)
Q Consensus 197 ~~~------~l~l--------~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 239 (247)
... .+++ +|.... +++.|++++|.++ .+|..+..+++|+.|
T Consensus 820 ~~~~L~sL~~L~Ls~c~~L~~~p~~~~-nL~~L~Ls~n~i~-~iP~si~~l~~L~~L 874 (1153)
T PLN03210 820 TGINLESLESLDLSGCSRLRTFPDIST-NISDLNLSRTGIE-EVPWWIEKFSNLSFL 874 (1153)
T ss_pred CCCCccccCEEECCCCCcccccccccc-ccCEeECCCCCCc-cChHHHhcCCCCCEE
Confidence 432 2332 333222 7899999999998 578888877777766
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=3.8e-16 Score=127.91 Aligned_cols=216 Identities=20% Similarity=0.219 Sum_probs=131.5
Q ss_pred CCcEEEccCCccccc----cCccccCCCCCcEEEccCCceee------cCCchhhhhcccccEEEccCCccccCChHhhh
Q 044683 3 SLKVLDASSNQLTGN----ISPNLCELVLLRELYIDNNDLRG------HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFF 72 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 72 (247)
.|+.++++++.++.. ++..+...+.++.++++++.+.+ .++..+.. +++|++|++++|.+....+..+.
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cCceeEEEccCCCCChhHHHHHH
Confidence 467788888877543 34445556677888887776651 11222333 56788888888877655555565
Q ss_pred cCCC---CCEEeccCCccccc----CchhHhhcC-CCccEEEccCCC------------------ccEEEccCCcCCCC-
Q 044683 73 DMKM---LKSLDISHNQLTGE----IPERMATGC-FSLEILALSNNS------------------LQGLYLSDNRLFGR- 125 (247)
Q Consensus 73 ~l~~---L~~L~l~~n~~~~~----~~~~~~~~~-~~L~~l~l~~n~------------------l~~l~l~~n~~~~~- 125 (247)
.+.+ |++|++++|.+.+. +...+ ..+ ++|+.+++++|. ++.+++++|.+++.
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 181 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG 181 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence 5555 88888888777521 11122 224 677777777763 44677777777642
Q ss_pred ---CchhhhcccCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCC----CCC----CCCCeEeccCCc
Q 044683 126 ---IPRWLGNLLALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLP----SCF----RTSSFVKKQDRR 190 (247)
Q Consensus 126 ---~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~----~~~~~L~l~~n~ 190 (247)
++..+...++|++|++++|.+++. +...+..+++|++|++++|.+++... ..+ .....|++++|.
T Consensus 182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 233345556888888888877632 23445567788888888888774211 111 233478888888
Q ss_pred ccccCCCcceeeeecchhcC--CCceEeccCCeeeec
Q 044683 191 TVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLE 225 (247)
Q Consensus 191 ~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~ 225 (247)
+++..... ++..+.. +|+.+++++|.++..
T Consensus 262 i~~~~~~~-----l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 262 ITDDGAKD-----LAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCcHHHHH-----HHHHHhcCCCccEEECCCCCCcHH
Confidence 76221110 1122222 788888988888754
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.56 E-value=7.2e-17 Score=141.19 Aligned_cols=178 Identities=31% Similarity=0.403 Sum_probs=116.7
Q ss_pred EEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhccc-ccEEEccCCccccCChH-hhhcCCCCCEEecc
Q 044683 6 VLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLV-FIHLNLSRNAFNGSIPS-SFFDMKMLKSLDIS 83 (247)
Q Consensus 6 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~ 83 (247)
.++...|.+. .+|+...+++.|++|++..|.+. .+|+.++..... +..+..+.|++. ..|. .=..++.|+.|++.
T Consensus 291 ~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 291 SLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHh
Confidence 3333344443 33444444555666666666665 555555443332 455555555544 2221 11123456677777
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCcc--------------EEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQ--------------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP 149 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~--------------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 149 (247)
+|.+++..- ..+.+..+|+.|++++|.++ +|++++|.++ .+|..+.+++.|++|...+|.+. .
T Consensus 368 nN~Ltd~c~-p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~ 444 (1081)
T KOG0618|consen 368 NNHLTDSCF-PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-S 444 (1081)
T ss_pred cCcccccch-hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-e
Confidence 777763222 22445778888888888544 7788888887 68899999999999999999998 7
Q ss_pred CchhhhCCCCCCEEEccCCcCcCC-CCCCCC--CCCeEeccCCc
Q 044683 150 IPIEFCQLELLTILDLSNNTIFGT-LPSCFR--TSSFVKKQDRR 190 (247)
Q Consensus 150 ~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~--~~~~L~l~~n~ 190 (247)
+| .+..++.|+.+|++.|.++.. ++.... ..++||+++|.
T Consensus 445 fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 445 FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 77 778999999999999999833 344333 44599999997
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.52 E-value=1.1e-14 Score=119.28 Aligned_cols=215 Identities=24% Similarity=0.203 Sum_probs=136.8
Q ss_pred CCCcEEEccCCcccc------ccCccccCCCCCcEEEccCCceeecCCchhhhhccc---ccEEEccCCcccc----CCh
Q 044683 2 TSLKVLDASSNQLTG------NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLV---FIHLNLSRNAFNG----SIP 68 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~---L~~L~l~~n~l~~----~~~ 68 (247)
+.+++++++++.+.+ ..+..+..+++|+.|++++|.+.+..+..+.. +.+ |++|++++|+++. .+.
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES-LLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH-HhccCcccEEEeeCCccchHHHHHHH
Confidence 357778887776652 23345666778888888888776444444433 444 8888888887762 223
Q ss_pred HhhhcC-CCCCEEeccCCcccccCchh---HhhcCCCccEEEccCCC------------------ccEEEccCCcCCCCC
Q 044683 69 SSFFDM-KMLKSLDISHNQLTGEIPER---MATGCFSLEILALSNNS------------------LQGLYLSDNRLFGRI 126 (247)
Q Consensus 69 ~~~~~l-~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~l~l~~n~------------------l~~l~l~~n~~~~~~ 126 (247)
..+..+ ++|+.+++++|.+++..... .+..+++|+.+++++|. ++.+++++|.+++..
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 344555 77888888888776322221 23345678888877773 457888888876433
Q ss_pred ----chhhhcccCcCeeeCcCCcccccCchhhh-----CCCCCCEEEccCCcCcCC----CCCCC---CCCCeEeccCCc
Q 044683 127 ----PRWLGNLLALEDIMMPNNNLQGPIPIEFC-----QLELLTILDLSNNTIFGT----LPSCF---RTSSFVKKQDRR 190 (247)
Q Consensus 127 ----~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l~~~----~~~~~---~~~~~L~l~~n~ 190 (247)
...+..+++|++|++++|.+++.....+. ..+.|+.|++++|.+++. +...+ ....++++++|.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 34456778999999999999853222222 247999999999999721 11222 334499999999
Q ss_pred ccccCCCcceeeeecchhc---CCCceEeccCCee
Q 044683 191 TVGKPCGSLGLDILPHLFR---RRPRRLAVEGFDL 222 (247)
Q Consensus 191 ~~~~~~~~~~l~l~p~~~~---~~L~~L~l~~n~l 222 (247)
++......+ ...+. ..++++++..|.+
T Consensus 290 l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 290 FGEEGAQLL-----AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHH-----HHHHhhcCCchhhcccCCCCC
Confidence 986533221 11111 1788888887753
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=2.2e-14 Score=120.08 Aligned_cols=166 Identities=33% Similarity=0.522 Sum_probs=91.7
Q ss_pred EEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683 6 VLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN 85 (247)
Q Consensus 6 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 85 (247)
..|++.|.+. .+|..++.+..|+.+.+..|.+. .+|..+.. +..|.+++++.|.+. ..|..++.++ |+.+.+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~-L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICN-LEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhh-hhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 4566666666 56666666666666666666665 66666655 666666666666666 5566565555 666666666
Q ss_pred cccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEc
Q 044683 86 QLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165 (247)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 165 (247)
+++ .+|..+. ..+.|..++++.|.++. +|..++.+.+|+.|.+..|++. .+|+.++.++ |..||+
T Consensus 154 kl~-~lp~~ig-~~~tl~~ld~s~nei~s-----------lpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDf 218 (722)
T KOG0532|consen 154 KLT-SLPEEIG-LLPTLAHLDVSKNEIQS-----------LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDF 218 (722)
T ss_pred ccc-cCCcccc-cchhHHHhhhhhhhhhh-----------chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeec
Confidence 666 6666665 46666666666665542 2444444444444444444444 3344444222 334444
Q ss_pred cCCcCcCCCCCCCCCCC---eEeccCCccc
Q 044683 166 SNNTIFGTLPSCFRTSS---FVKKQDRRTV 192 (247)
Q Consensus 166 ~~n~l~~~~~~~~~~~~---~L~l~~n~~~ 192 (247)
++|+++ .+|..|..+. +|.|.+|.+.
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 444444 4444443222 4444444444
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.35 E-value=1.4e-12 Score=96.50 Aligned_cols=130 Identities=28% Similarity=0.324 Sum_probs=54.3
Q ss_pred ccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCC
Q 044683 22 LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS 101 (247)
Q Consensus 22 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 101 (247)
+.+...++.|++++|.|+ .+. .+...+.+|+.|++++|.++. +. .+..+++|++|++++|+++ .+...+...+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 344557899999999998 654 454447789999999999984 33 4778999999999999998 776655445889
Q ss_pred ccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC---chhhhCCCCCCEEEc
Q 044683 102 LEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI---PIEFCQLELLTILDL 165 (247)
Q Consensus 102 L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l 165 (247)
|+.|++++|.++.+. .-..+..+++|++|++.+|+++... ...+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~---------~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLN---------ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCC---------CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChH---------HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 998888888877542 1356778999999999999998432 245678999998875
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.29 E-value=7.8e-12 Score=105.54 Aligned_cols=167 Identities=32% Similarity=0.453 Sum_probs=93.7
Q ss_pred EEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcc-cccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683 7 LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLL-VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN 85 (247)
Q Consensus 7 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 85 (247)
++...+.+. .....+..+..++.+++.+|.++ .++..... +. +|+.|++++|.+. .+|..++.++.|+.|++++|
T Consensus 98 l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 98 LDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeccccccc-cCchhhhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 444444443 22233444566777777777777 67766653 42 6777777777777 45555677777777777777
Q ss_pred cccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEc
Q 044683 86 QLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165 (247)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 165 (247)
.++ .+|.... ..+.|+.+++++|.++ .+|........|+.+++++|.+. ..+..+..++.+..+.+
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-----------~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l 239 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-----------DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-----------cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccccccc
Confidence 777 6666443 2566666666666554 22333333344555555555433 23344455555555555
Q ss_pred cCCcCcCCCCCCC---CCCCeEeccCCccc
Q 044683 166 SNNTIFGTLPSCF---RTSSFVKKQDRRTV 192 (247)
Q Consensus 166 ~~n~l~~~~~~~~---~~~~~L~l~~n~~~ 192 (247)
.+|++.. .+... .....|++++|.++
T Consensus 240 ~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 240 SNNKLED-LPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred CCceeee-ccchhccccccceecccccccc
Confidence 5555542 12222 12235555555555
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.6e-13 Score=115.08 Aligned_cols=177 Identities=25% Similarity=0.386 Sum_probs=144.8
Q ss_pred CCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccE
Q 044683 25 LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEI 104 (247)
Q Consensus 25 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 104 (247)
+......+++.|++. ++|..+.. +..|..+.++.|.+. .+|.+++++..|.+++++.|+++ .+|..++. + -|+.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-l-pLkv 147 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD-L-PLKV 147 (722)
T ss_pred ccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc-C-ccee
Confidence 455567899999998 99998877 778888999999987 78999999999999999999998 88888763 4 3777
Q ss_pred EEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC--
Q 044683 105 LALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS-- 182 (247)
Q Consensus 105 l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-- 182 (247)
+.+++|+++ .+|..++....|..|+.+.|.+. .+|..++++.+|+.|.++.|++. .+|..+....
T Consensus 148 li~sNNkl~-----------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi 214 (722)
T KOG0532|consen 148 LIVSNNKLT-----------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLI 214 (722)
T ss_pred EEEecCccc-----------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCcee
Confidence 777777665 56888888889999999999998 67888999999999999999998 5555444444
Q ss_pred eEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCcccc
Q 044683 183 FVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVC 231 (247)
Q Consensus 183 ~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~ 231 (247)
.||++.|+++- +|-.|.. .|++|.|.+|.+. ..|..+|
T Consensus 215 ~lDfScNkis~----------iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC 254 (722)
T KOG0532|consen 215 RLDFSCNKISY----------LPVDFRKMRHLQVLQLENNPLQ-SPPAQIC 254 (722)
T ss_pred eeecccCceee----------cchhhhhhhhheeeeeccCCCC-CChHHHH
Confidence 99999999873 4445566 9999999999997 4555554
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.26 E-value=1.9e-11 Score=108.38 Aligned_cols=91 Identities=32% Similarity=0.592 Sum_probs=48.7
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+++.+|..++.+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~-l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 344555555555555555555555555555555555555544443 5555555555555555555555555555555555
Q ss_pred CCcccccCchhH
Q 044683 84 HNQLTGEIPERM 95 (247)
Q Consensus 84 ~n~~~~~~~~~~ 95 (247)
+|.+++.+|..+
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 555555555443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=1e-11 Score=104.83 Aligned_cols=152 Identities=34% Similarity=0.488 Sum_probs=108.1
Q ss_pred CCCcEEEccCCccccccCccccCCC-CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELV-LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+.++.+++.+|.++ .++.....+. +|+.|++++|.+. .+|..+.. +++|+.|++++|.+. .+|...+..+.|+.+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~-l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhc-cccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 35788999999998 6666677774 9999999999998 88766665 899999999999999 667666688999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 160 (247)
++++|.+. .+|..+. ....|+.+.+++|... ..+..+...+++..+.+.+|++. ..+..++.++.+
T Consensus 192 ~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-----------~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l 257 (394)
T COG4886 192 DLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-----------ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL 257 (394)
T ss_pred eccCCccc-cCchhhh-hhhhhhhhhhcCCcce-----------ecchhhhhcccccccccCCceee-eccchhcccccc
Confidence 99999998 8888652 2445887777777421 12333444555555555555554 223444555555
Q ss_pred CEEEccCCcCc
Q 044683 161 TILDLSNNTIF 171 (247)
Q Consensus 161 ~~L~l~~n~l~ 171 (247)
+.|++++|.++
T Consensus 258 ~~L~~s~n~i~ 268 (394)
T COG4886 258 ETLDLSNNQIS 268 (394)
T ss_pred ceecccccccc
Confidence 55555555555
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=5.7e-12 Score=99.99 Aligned_cols=215 Identities=19% Similarity=0.162 Sum_probs=142.4
Q ss_pred CCCcEEEccCCcccccc----CccccCCCCCcEEEccCCc---eeecCCchhhh------hcccccEEEccCCccccCCh
Q 044683 2 TSLKVLDASSNQLTGNI----SPNLCELVLLRELYIDNND---LRGHIPVEIGT------YLLVFIHLNLSRNAFNGSIP 68 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~------~l~~L~~L~l~~n~l~~~~~ 68 (247)
.+++.++|++|.+.... ...+.+.++|+..++++-. ...++|+.... +.++|++++||.|-+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 56788999999886543 3445566788888877632 22244433221 14578999999998876555
Q ss_pred Hhh----hcCCCCCEEeccCCcccccCchhH-------------hhcCCCccEEEccCCC------------------cc
Q 044683 69 SSF----FDMKMLKSLDISHNQLTGEIPERM-------------ATGCFSLEILALSNNS------------------LQ 113 (247)
Q Consensus 69 ~~~----~~l~~L~~L~l~~n~~~~~~~~~~-------------~~~~~~L~~l~l~~n~------------------l~ 113 (247)
..| ..+..|++|++.+|.+. ...... ...-+.|+.+..++|. +.
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 554 35678889999988875 322211 0124578888888884 33
Q ss_pred EEEccCCcCCCC----CchhhhcccCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCC--------CC
Q 044683 114 GLYLSDNRLFGR----IPRWLGNLLALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLP--------SC 177 (247)
Q Consensus 114 ~l~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~--------~~ 177 (247)
.+.+..|+|... +...+..+++|++|+|.+|.++.. +...++.+++|++++++++.+...-. ..
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 777888877642 234578889999999999988732 45678889999999999998874322 12
Q ss_pred CCCCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCee
Q 044683 178 FRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDL 222 (247)
Q Consensus 178 ~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l 222 (247)
......+.+.+|.++-..-.. +...+.. .|.+|+|++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~-----la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALA-----LAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHH-----HHHHHhcchhhHHhcCCcccc
Confidence 223448899999887321110 1111222 799999999998
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=4.1e-11 Score=88.65 Aligned_cols=126 Identities=23% Similarity=0.259 Sum_probs=49.0
Q ss_pred CCcEEEccCCccccccCcccc-CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhh-hcCCCCCEE
Q 044683 3 SLKVLDASSNQLTGNISPNLC-ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSF-FDMKMLKSL 80 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L 80 (247)
.+++|++++|.|+. + +.+. .+.+|+.|++++|.|+ .+.. +.. ++.|++|++++|+++. +...+ ..+++|++|
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~-l~~-L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEG-LPG-LPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccC-ccC-hhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 47899999999984 3 3444 5789999999999998 6653 443 8899999999999995 44444 468999999
Q ss_pred eccCCcccccCch-hHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCc
Q 044683 81 DISHNQLTGEIPE-RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMP 142 (247)
Q Consensus 81 ~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~ 142 (247)
++++|++. .+.. .....+++|+.|++.+|.+..- ..--...+..+++|+.||-.
T Consensus 94 ~L~~N~I~-~l~~l~~L~~l~~L~~L~L~~NPv~~~-------~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKIS-DLNELEPLSSLPKLRVLSLEGNPVCEK-------KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGS-------TTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCC-ChHHhHHHHcCCCcceeeccCCcccch-------hhHHHHHHHHcChhheeCCE
Confidence 99999997 3322 2334578888777777766521 00113346778889888653
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.1e-11 Score=98.50 Aligned_cols=145 Identities=28% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCCCcEEEccCCceeecCC-chhhhhcccccEEEccCCcccc--CChHhhhcCCCCCEEeccCCcccccCchhHhhcCCC
Q 044683 25 LVLLRELYIDNNDLRGHIP-VEIGTYLLVFIHLNLSRNAFNG--SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS 101 (247)
Q Consensus 25 l~~L~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 101 (247)
+.+|+...+++..+. ..+ ......+++++.|+++.|-+.. .+..-..++|+|+.|+++.|++........-..+++
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 566667777776665 222 1333346677777777776653 122233456777777777776652222211123455
Q ss_pred ccEEEccCCCcc---------------EEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc--hhhhCCCCCCEEE
Q 044683 102 LEILALSNNSLQ---------------GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP--IEFCQLELLTILD 164 (247)
Q Consensus 102 L~~l~l~~n~l~---------------~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~l~~~~~L~~L~ 164 (247)
++.|.++.|.++ .|++..|..-..-......++.|+.|+|++|.+. ..+ ...+.++.|..|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence 666666555443 3444444211111222233445666666666554 222 3344566666666
Q ss_pred ccCCcCc
Q 044683 165 LSNNTIF 171 (247)
Q Consensus 165 l~~n~l~ 171 (247)
++.+.++
T Consensus 278 ls~tgi~ 284 (505)
T KOG3207|consen 278 LSSTGIA 284 (505)
T ss_pred ccccCcc
Confidence 6666655
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.06 E-value=9e-10 Score=97.84 Aligned_cols=103 Identities=29% Similarity=0.487 Sum_probs=62.5
Q ss_pred CCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhC
Q 044683 77 LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQ 156 (247)
Q Consensus 77 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 156 (247)
++.|++++|.+.+.+|..+.. +++|+.|++ ++|.+.+.+|..+..+++|+.|++++|.+++.+|+.++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~-L~~L~~L~L----------s~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~ 488 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISK-LRHLQSINL----------SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488 (623)
T ss_pred EEEEECCCCCccccCCHHHhC-CCCCCEEEC----------CCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc
Confidence 556666666666666665442 555554433 333344556666666677777777777776666666667
Q ss_pred CCCCCEEEccCCcCcCCCCCCCCCC----CeEeccCCc
Q 044683 157 LELLTILDLSNNTIFGTLPSCFRTS----SFVKKQDRR 190 (247)
Q Consensus 157 ~~~L~~L~l~~n~l~~~~~~~~~~~----~~L~l~~n~ 190 (247)
+++|+.|++++|.+++.+|..+... ..+++.+|.
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 7777777777777766666554321 155666554
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=4.7e-11 Score=93.47 Aligned_cols=135 Identities=22% Similarity=0.236 Sum_probs=96.0
Q ss_pred cccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCC
Q 044683 21 NLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCF 100 (247)
Q Consensus 21 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 100 (247)
.+...+.|+.+++++|.|+ .+.++..- .|.++.|+++.|++..+ ..++.+++|+.||+++|.++ .+.. +-..+.
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~G-wh~KLG 352 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVG-WHLKLG 352 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhh-ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhh-hHhhhc
Confidence 3444577888999999988 77776654 78899999999998733 34788899999999999887 5543 233466
Q ss_pred CccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC-chhhhCCCCCCEEEccCCcCcCC
Q 044683 101 SLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI-PIEFCQLELLTILDLSNNTIFGT 173 (247)
Q Consensus 101 ~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~ 173 (247)
+.+.|.++.|.+..+ ..++.+=+|..||+.+|+|...- -..++++|.|.++.+.+|.+++.
T Consensus 353 NIKtL~La~N~iE~L------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred CEeeeehhhhhHhhh------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 777777666665533 23455667788888888876321 24567788888888888888744
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=2e-10 Score=70.25 Aligned_cols=57 Identities=33% Similarity=0.465 Sum_probs=24.2
Q ss_pred CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN 85 (247)
Q Consensus 28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 85 (247)
|++|++++|+++ .+|...+..+++|++|++++|.++...+.+|..+++|+++++++|
T Consensus 3 L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444 334333333444444444444444333334444444444444444
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=2.5e-10 Score=69.81 Aligned_cols=61 Identities=33% Similarity=0.373 Sum_probs=55.7
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCcc
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l 63 (247)
++|++|++++|.++...+..|..+++|++|++++|.++ .+++..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 57999999999999777789999999999999999998 77877777799999999999975
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=8.7e-11 Score=92.02 Aligned_cols=128 Identities=22% Similarity=0.217 Sum_probs=94.4
Q ss_pred cccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchh
Q 044683 50 LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRW 129 (247)
Q Consensus 50 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~ 129 (247)
...|+++|+++|.++ .+..+..-.|+++.|+++.|++. .+.. ...+++|+.|++++|.++.+ ..+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~~-----------~Gw 347 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAEC-----------VGW 347 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh--hhhcccceEeecccchhHhh-----------hhh
Confidence 346889999999998 56677778899999999999987 6544 33488888888888877643 344
Q ss_pred hhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCC-CCCC---CCCCeEeccCCccccc
Q 044683 130 LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTL-PSCF---RTSSFVKKQDRRTVGK 194 (247)
Q Consensus 130 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~---~~~~~L~l~~n~~~~~ 194 (247)
-..+.++++|.+++|.+... ..+..+-+|..||+++|+|.... -..+ .+...+.+.+|.+.+.
T Consensus 348 h~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred HhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 45677888999999988732 56778888999999999986321 1222 2333788888888764
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.2e-10 Score=93.58 Aligned_cols=170 Identities=24% Similarity=0.217 Sum_probs=113.4
Q ss_pred CCCcEEEccCCccccccC-ccccCCCCCcEEEccCCceee-cCCchhhhhcccccEEEccCCccccCChH-hhhcCCCCC
Q 044683 2 TSLKVLDASSNQLTGNIS-PNLCELVLLRELYIDNNDLRG-HIPVEIGTYLLVFIHLNLSRNAFNGSIPS-SFFDMKMLK 78 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~ 78 (247)
++|+.+.+.++.+..... .....|++++.|++++|-+.. ..-..+...+|+|+.|.++.|++...... .-..++.|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 457777777776652211 245567888888888887662 12234555678888888888877522111 112467788
Q ss_pred EEeccCCcccccCchhHhhcCCCccEEEccCC--------------CccEEEccCCcCCCCC-chhhhcccCcCeeeCcC
Q 044683 79 SLDISHNQLTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSDNRLFGRI-PRWLGNLLALEDIMMPN 143 (247)
Q Consensus 79 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n--------------~l~~l~l~~n~~~~~~-~~~~~~~~~L~~L~l~~ 143 (247)
.|.++.|.+++.--..+...+|+++.|.+..| .+++|++++|++-... -.....++.|+.|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 88888888875433444445788888888877 2447888888775322 13457788999999999
Q ss_pred Cccccc-Cchh-----hhCCCCCCEEEccCCcCc
Q 044683 144 NNLQGP-IPIE-----FCQLELLTILDLSNNTIF 171 (247)
Q Consensus 144 n~~~~~-~~~~-----l~~~~~L~~L~l~~n~l~ 171 (247)
+.+... .|+. ...+++|+.|++..|.+.
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 988743 2333 345789999999999985
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=8.7e-10 Score=87.79 Aligned_cols=185 Identities=19% Similarity=0.215 Sum_probs=100.4
Q ss_pred CCCcEEEccCCccccccCcc----ccCCCCCcEEEccCCceeecCCchhhh------------hcccccEEEccCCcccc
Q 044683 2 TSLKVLDASSNQLTGNISPN----LCELVLLRELYIDNNDLRGHIPVEIGT------------YLLVFIHLNLSRNAFNG 65 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~n~i~~~~~~~~~~------------~l~~L~~L~l~~n~l~~ 65 (247)
+.|+.++||+|.+....+.. +.++..|++|++.+|.+.......+++ ..+.|+.+...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 35666666666655433322 334566666666666554111111000 13456666666666542
Q ss_pred C----ChHhhhcCCCCCEEeccCCccccc---CchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCe
Q 044683 66 S----IPSSFFDMKMLKSLDISHNQLTGE---IPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALED 138 (247)
Q Consensus 66 ~----~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~ 138 (247)
. ....|...+.|+.+.++.|.+... .-...+..+++|+.|++.+|-++.-. +..+...++.+++|+.
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg------s~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG------SVALAKALSSWPHLRE 245 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH------HHHHHHHhcccchhee
Confidence 1 223444556666666666655411 11112334566665555555433110 0123456778889999
Q ss_pred eeCcCCcccccCc----hhhh-CCCCCCEEEccCCcCcCCC----CCCCCCC---CeEeccCCccc
Q 044683 139 IMMPNNNLQGPIP----IEFC-QLELLTILDLSNNTIFGTL----PSCFRTS---SFVKKQDRRTV 192 (247)
Q Consensus 139 L~l~~n~~~~~~~----~~l~-~~~~L~~L~l~~n~l~~~~----~~~~~~~---~~L~l~~n~~~ 192 (247)
+++++|.+..... +++. ..+.|+++.+.+|.|+..- ..+.... ..|++++|++.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 9999998874332 3333 4689999999999987331 1222211 28899999984
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=2.3e-09 Score=91.03 Aligned_cols=101 Identities=27% Similarity=0.340 Sum_probs=56.6
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH 84 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 84 (247)
..+++..|.+. ..-..+..+..++.+++.+|.+. .+...+.. +++|++|++++|.|+... .+..++.|+.|++.+
T Consensus 75 ~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~-~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 75 KELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSS-LVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSG 149 (414)
T ss_pred Hhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhh-hhcchheecccccccccc--chhhccchhhheecc
Confidence 34445555554 22334556666777777777776 44432322 667777777777776432 244556677777777
Q ss_pred CcccccCchhHhhcCCCccEEEccCCCcc
Q 044683 85 NQLTGEIPERMATGCFSLEILALSNNSLQ 113 (247)
Q Consensus 85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 113 (247)
|.++ .+.. +..+..|+.+++++|.++
T Consensus 150 N~i~-~~~~--~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 150 NLIS-DISG--LESLKSLKLLDLSYNRIV 175 (414)
T ss_pred Ccch-hccC--CccchhhhcccCCcchhh
Confidence 7766 4433 222555665555555444
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.68 E-value=2.2e-08 Score=77.58 Aligned_cols=219 Identities=18% Similarity=0.142 Sum_probs=140.5
Q ss_pred CCCCcEEEccCCccccccCccc----cCCCCCcEEEccCCcee---ecCCchhh------hhcccccEEEccCCccccCC
Q 044683 1 MTSLKVLDASSNQLTGNISPNL----CELVLLRELYIDNNDLR---GHIPVEIG------TYLLVFIHLNLSRNAFNGSI 67 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~i~---~~~~~~~~------~~l~~L~~L~l~~n~l~~~~ 67 (247)
|..++.+++|+|.|......++ ++-++|+...++..... ++++..+. -.+|.|+.++++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4568899999999976554444 44577888877764322 22332211 12688999999999987666
Q ss_pred hHhh----hcCCCCCEEeccCCcccccCch-----hHh--------hcCCCccEEEccCCC------------------c
Q 044683 68 PSSF----FDMKMLKSLDISHNQLTGEIPE-----RMA--------TGCFSLEILALSNNS------------------L 112 (247)
Q Consensus 68 ~~~~----~~l~~L~~L~l~~n~~~~~~~~-----~~~--------~~~~~L~~l~l~~n~------------------l 112 (247)
|..+ +..+.|.+|.+++|.+. .+.. ..+ ..-|.|+....++|+ +
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 6544 45678999999999875 3331 111 135678999988884 4
Q ss_pred cEEEccCCcCCCCCc-----hhhhcccCcCeeeCcCCcccc----cCchhhhCCCCCCEEEccCCcCcCCCC----CCC-
Q 044683 113 QGLYLSDNRLFGRIP-----RWLGNLLALEDIMMPNNNLQG----PIPIEFCQLELLTILDLSNNTIFGTLP----SCF- 178 (247)
Q Consensus 113 ~~l~l~~n~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~- 178 (247)
.++.+..|.|..... ..+..+.+|++|++++|.++. .+..+++.++.|++|.+.+|-++..-. ..|
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 478888888763311 124567899999999998873 245678889999999999988863211 111
Q ss_pred ----CCCCeEeccCCcccccCCCcceeee-ecchhcC---CCceEeccCCeeee
Q 044683 179 ----RTSSFVKKQDRRTVGKPCGSLGLDI-LPHLFRR---RPRRLAVEGFDLVL 224 (247)
Q Consensus 179 ----~~~~~L~l~~n~~~~~~~~~~~l~l-~p~~~~~---~L~~L~l~~n~l~~ 224 (247)
.....|...+|...+.+-. ++ +|..... -|..|-+.+|.+..
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~----~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIIL----DISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhcCCCccccccchhhhcCceee----eechhhhhhcccHHHHHHHHccCcchh
Confidence 2233667777766654311 11 2222222 45556677777653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=7.2e-09 Score=88.05 Aligned_cols=161 Identities=32% Similarity=0.392 Sum_probs=109.9
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++++.+++.+|.|.. +...+..+.+|++|++++|.|+ .+...- . ++.|+.|++.+|.+... ..+..++.|+.+
T Consensus 94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~l~-~-l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEGLS-T-LTLLKELNLSGNLISDI--SGLESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccchh-h-ccchhhheeccCcchhc--cCCccchhhhcc
Confidence 3578899999999984 4443778999999999999998 554332 2 66799999999999832 345668899999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccE------------EEccCCcCCCCCchhhhcccC--cCeeeCcCCcc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQG------------LYLSDNRLFGRIPRWLGNLLA--LEDIMMPNNNL 146 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~------------l~l~~n~~~~~~~~~~~~~~~--L~~L~l~~n~~ 146 (247)
++++|.+. .+.......+.+++.+.+.+|.+.. +++..|.+...- .+..... |+.+++++|.+
T Consensus 168 ~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 168 DLSYNRIV-DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRI 244 (414)
T ss_pred cCCcchhh-hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCcc
Confidence 99999998 6655202347788888888886552 234444443211 1112222 66777777777
Q ss_pred cccCchhhhCCCCCCEEEccCCcCc
Q 044683 147 QGPIPIEFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 147 ~~~~~~~l~~~~~L~~L~l~~n~l~ 171 (247)
. ..+..+..+..+..+++.+|.+.
T Consensus 245 ~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 245 S-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred c-cccccccccccccccchhhcccc
Confidence 6 33345566677777777777765
No 42
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.51 E-value=1.3e-07 Score=70.27 Aligned_cols=127 Identities=24% Similarity=0.260 Sum_probs=94.6
Q ss_pred CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEc
Q 044683 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL 107 (247)
Q Consensus 28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 107 (247)
=+.+++++.++. .+. ..+....+...+|+++|.+.. . ..|..+++|.+|.+++|+++ .+...+...+++++.|.+
T Consensus 21 e~e~~LR~lkip-~ie-nlg~~~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIP-VIE-NLGATLDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred cccccccccccc-chh-hccccccccceecccccchhh-c-ccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence 356777777665 322 244446678889999998863 2 34677889999999999998 777777777888999999
Q ss_pred cCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC---chhhhCCCCCCEEEccCC
Q 044683 108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI---PIEFCQLELLTILDLSNN 168 (247)
Q Consensus 108 ~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l~~n 168 (247)
.+|+++++. --..+..++.|++|.+-+|.++..- -..+..+|+|+.||.+.=
T Consensus 96 tnNsi~~l~---------dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 96 TNNSIQELG---------DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCcchhhhh---------hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999888662 1234667889999999999887321 245678899999998664
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=3e-09 Score=92.32 Aligned_cols=105 Identities=33% Similarity=0.430 Sum_probs=50.4
Q ss_pred cccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchh
Q 044683 50 LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRW 129 (247)
Q Consensus 50 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~ 129 (247)
++.++.|++++|+++.. +.+..+++|++||+++|.+. .+|.....++ +|+.|.+.+|.+++| ..
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL------------~g 249 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL------------RG 249 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh------------hh
Confidence 45566666666666532 25556666666666666665 5554322222 255555555544322 12
Q ss_pred hhcccCcCeeeCcCCcccccC-chhhhCCCCCCEEEccCCcC
Q 044683 130 LGNLLALEDIMMPNNNLQGPI-PIEFCQLELLTILDLSNNTI 170 (247)
Q Consensus 130 ~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l 170 (247)
+.++++|+.||+++|-+.+.- -..+..+..|+.|.|.+|.+
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 344555555555555544210 01222334445555555544
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.45 E-value=1.6e-07 Score=85.95 Aligned_cols=105 Identities=26% Similarity=0.301 Sum_probs=66.1
Q ss_pred CCcEEEccCCc--cccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 3 SLKVLDASSNQ--LTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 3 ~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
.|++|-+..|. +.......|..++.|++||+++|.--+.+|..++. +-+|++|+++++.+. .+|..++.+.+|.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 45566666664 33233334666777777777766554577777766 677777777777776 667777777777777
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNN 110 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n 110 (247)
++..+.....+ ..+...+.+|+++.+...
T Consensus 624 nl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccc-cchhhhcccccEEEeecc
Confidence 77766544233 333334677777765443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=1.4e-08 Score=88.28 Aligned_cols=155 Identities=21% Similarity=0.159 Sum_probs=77.8
Q ss_pred CccccCCCCCcEEEccCCceeecCCchhhhhcccccE--------------------------------EEccCCccccC
Q 044683 19 SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIH--------------------------------LNLSRNAFNGS 66 (247)
Q Consensus 19 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~--------------------------------L~l~~n~l~~~ 66 (247)
|-.+..++.|++|.+.++.+. . ..++...-.+|++ .+.+.|++. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~-~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS-T-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchh-h-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 455667788888888888776 2 1111111122333 333344443 2
Q ss_pred ChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683 67 IPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146 (247)
Q Consensus 67 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 146 (247)
...++.-++.++.|+++.|+++ ... . ...++.|++|++++|.++. +|..-.....|+.|.+++|.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~-~v~-~-Lr~l~~LkhLDlsyN~L~~-----------vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFT-KVD-N-LRRLPKLKHLDLSYNCLRH-----------VPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhh-hhH-H-HHhcccccccccccchhcc-----------ccccchhhhhheeeeecccHH
Confidence 3333444455555555555554 222 1 2235555555555554442 222111122377777777776
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcCCCC-CCCC---CCCeEeccCCccc
Q 044683 147 QGPIPIEFCQLELLTILDLSNNTIFGTLP-SCFR---TSSFVKKQDRRTV 192 (247)
Q Consensus 147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~---~~~~L~l~~n~~~ 192 (247)
+.. ..+.++++|+.||+++|-+.+.-- ..+. ....|+|.+|.+.
T Consensus 245 ~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 245 TTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred Hhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 632 345667777777777777764321 1111 1126666666653
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.41 E-value=3.4e-08 Score=68.90 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=88.1
Q ss_pred cccEEEccCCccccCChHhhhc---CCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCch
Q 044683 52 VFIHLNLSRNAFNGSIPSSFFD---MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPR 128 (247)
Q Consensus 52 ~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~ 128 (247)
.+..++++.|.+. .++++... ...|..+++++|.+. .+|..+-...+.++.+++.+|.++ .+|.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-----------dvPe 94 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-----------DVPE 94 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-----------hchH
Confidence 4667788888765 44554443 345666788888888 777776555566666666655554 4577
Q ss_pred hhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC--eEeccCCcccccCC
Q 044683 129 WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS--FVKKQDRRTVGKPC 196 (247)
Q Consensus 129 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~l~~n~~~~~~~ 196 (247)
.+..++.|+.++++.|.+. ..|..+..+.++..|+..+|.+....-+.|.... ..++.++.+.+..+
T Consensus 95 E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCc
Confidence 7888888888888888888 5567777788888888888887733333333222 55666666665544
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.3e-08 Score=78.52 Aligned_cols=149 Identities=20% Similarity=0.179 Sum_probs=87.0
Q ss_pred CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC-cccccCchhHhhcCCCccEE
Q 044683 27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN-QLTGEIPERMATGCFSLEIL 105 (247)
Q Consensus 27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~l 105 (247)
.+++||++...|+..--..+-..+.+|+.|.+.++.+...+...++.-..|+.++++.+ .++.....-+++.+..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777777777763222222233566777777777777777777777777888877775 45422233455667777777
Q ss_pred EccCCC----------------ccEEEccCCcCC---CCCchhhhcccCcCeeeCcCCc-ccccCchhhhCCCCCCEEEc
Q 044683 106 ALSNNS----------------LQGLYLSDNRLF---GRIPRWLGNLLALEDIMMPNNN-LQGPIPIEFCQLELLTILDL 165 (247)
Q Consensus 106 ~l~~n~----------------l~~l~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l 165 (247)
++++|. ++.|+++++.-. ..+..-.++++++.+|||++|- ++......+.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 777763 234555544211 1112223556777777777663 33223345556777777777
Q ss_pred cCCcCcCCCCCC
Q 044683 166 SNNTIFGTLPSC 177 (247)
Q Consensus 166 ~~n~l~~~~~~~ 177 (247)
+.+.. .+|..
T Consensus 346 sRCY~--i~p~~ 355 (419)
T KOG2120|consen 346 SRCYD--IIPET 355 (419)
T ss_pred hhhcC--CChHH
Confidence 66653 44443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=4.1e-07 Score=71.61 Aligned_cols=100 Identities=25% Similarity=0.211 Sum_probs=72.9
Q ss_pred CCCCcEEEccCCceee-cCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCcc
Q 044683 25 LVLLRELYIDNNDLRG-HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103 (247)
Q Consensus 25 l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 103 (247)
+..++.+++.+|.|++ .--..+...+|.|++|+++.|.+...+-..-....+|+.+.+.+..+.+.-..+....+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 5678888999988872 111233345888999999999887543322246678889999888887666666667788899
Q ss_pred EEEccCCCccEEEccCCcCCC
Q 044683 104 ILALSNNSLQGLYLSDNRLFG 124 (247)
Q Consensus 104 ~l~l~~n~l~~l~l~~n~~~~ 124 (247)
.+.++.|+++.+.+..+-+..
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~ 170 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIED 170 (418)
T ss_pred hhhhccchhhhhccccccccc
Confidence 999999988888877776654
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=1.2e-07 Score=66.24 Aligned_cols=103 Identities=26% Similarity=0.374 Sum_probs=60.4
Q ss_pred EEEccCCccccccC---ccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 6 VLDASSNQLTGNIS---PNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 6 ~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
.++|+.|.+- .++ ..+.....|+..++++|.+. .+|+.+....+.++++++.+|.+. .+|..++.++.|+.+++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4556666544 222 22333445555667777766 666666655556666777777666 55666666777777777
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCcc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ 113 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 113 (247)
+.|.+. ..|+.++. +.++-.|+..+|.+.
T Consensus 108 ~~N~l~-~~p~vi~~-L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAP-LIKLDMLDSPENARA 136 (177)
T ss_pred ccCccc-cchHHHHH-HHhHHHhcCCCCccc
Confidence 777666 56665554 555555554444443
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.9e-06 Score=48.47 Aligned_cols=36 Identities=25% Similarity=0.512 Sum_probs=21.2
Q ss_pred cccEEEccCCccccCChHhhhcCCCCCEEeccCCccc
Q 044683 52 VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLT 88 (247)
Q Consensus 52 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 88 (247)
+|++|++++|.++ .+|..++++++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 44555666666666666666665
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=1.2e-06 Score=49.30 Aligned_cols=37 Identities=38% Similarity=0.547 Sum_probs=26.8
Q ss_pred cCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCc
Q 044683 134 LALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 134 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 171 (247)
++|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 36778888888887 55666778888888888888877
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.08 E-value=6.3e-06 Score=75.78 Aligned_cols=126 Identities=25% Similarity=0.329 Sum_probs=88.1
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCc--eeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNND--LRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
.+.+.+-+|.+. .++... .+++|+.|-+..|. +. .++..++..++.|+.||+++|.-.+.+|..++.+-+|++|+
T Consensus 525 ~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 525 VRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred eeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 455566556554 223222 23478888888886 55 78888888899999999998876668899999999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNN 144 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 144 (247)
++++.+. .+|.++.. +..|.+|++..+. ....++.....+++|++|.+..-
T Consensus 602 L~~t~I~-~LP~~l~~-Lk~L~~Lnl~~~~----------~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGN-LKKLIYLNLEVTG----------RLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCcc-ccchHHHH-HHhhheecccccc----------ccccccchhhhcccccEEEeecc
Confidence 9999998 88988764 7777777665442 11123444455667777666544
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.07 E-value=7.2e-06 Score=61.14 Aligned_cols=108 Identities=21% Similarity=0.214 Sum_probs=58.6
Q ss_pred CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCch-hHhhcCCCccEE
Q 044683 27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPE-RMATGCFSLEIL 105 (247)
Q Consensus 27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l 105 (247)
+...+|+++|.+. .++ .+.. ++.|++|.+++|+|+.+.|.--.-+++|..|.+.+|.+. .+.+ .-...+|.|+.|
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp~-l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLPH-LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchh-hcc-cCCC-ccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 4455677777665 333 2222 666777777777777554443334566777777777665 3321 112236666666
Q ss_pred EccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683 106 ALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN 145 (247)
Q Consensus 106 ~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 145 (247)
.+-+|.++...-. -...+..++++++||.+.-.
T Consensus 119 tll~Npv~~k~~Y-------R~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNY-------RLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCc-------eeEEEEecCcceEeehhhhh
Confidence 6666655422100 01224556677777766543
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=1e-05 Score=72.57 Aligned_cols=134 Identities=23% Similarity=0.213 Sum_probs=61.1
Q ss_pred CCCcEEEccCCcee-ecCCchhhhhcccccEEEccCCcccc-CChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCcc
Q 044683 26 VLLRELYIDNNDLR-GHIPVEIGTYLLVFIHLNLSRNAFNG-SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103 (247)
Q Consensus 26 ~~L~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 103 (247)
.+|++|++++...- ..-|..++..+|+|+.|.+++-.+.. ..-....++|+|..||+++++++ .+ .++. .+.+|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHH
Confidence 34555555553211 12333444445666666665554431 11223345566666666666555 33 2222 244554
Q ss_pred EEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC------chhhhCCCCCCEEEccCCcCc
Q 044683 104 ILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI------PIEFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 104 ~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~------~~~l~~~~~L~~L~l~~n~l~ 171 (247)
.|.+.+=.+.. ...-..+.++++|++||+|..+..... -+.-..+|+|+.||.+++.+.
T Consensus 199 ~L~mrnLe~e~---------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFES---------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCc---------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 44433211110 011223455666666666655443211 011223566666666666555
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.9e-06 Score=67.98 Aligned_cols=161 Identities=23% Similarity=0.163 Sum_probs=97.6
Q ss_pred CcEEEccCCcccccc-CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC-ccccC-ChHhhhcCCCCCEE
Q 044683 4 LKVLDASSNQLTGNI-SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN-AFNGS-IPSSFFDMKMLKSL 80 (247)
Q Consensus 4 L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L 80 (247)
|+++|++...|+..- -.-+..|.+|+.|.+.++.+.+.+...+.+ -..|+.++++.+ .++.- ..--+..+..|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 667788777776432 223455777888888888777666666665 457788888765 33311 11234567777777
Q ss_pred eccCCcccccCchh-HhhcCCCccEEEccCC-----------------CccEEEccCCcC-CCCCchhhhcccCcCeeeC
Q 044683 81 DISHNQLTGEIPER-MATGCFSLEILALSNN-----------------SLQGLYLSDNRL-FGRIPRWLGNLLALEDIMM 141 (247)
Q Consensus 81 ~l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n-----------------~l~~l~l~~n~~-~~~~~~~~~~~~~L~~L~l 141 (247)
+++.+....+.-.. +..--+++..|+++++ .+..||++.+.. +...-..+..++.|+++.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77777654222111 1112245555555554 344667766543 3333456778899999999
Q ss_pred cCCcccccCchh---hhCCCCCCEEEccC
Q 044683 142 PNNNLQGPIPIE---FCQLELLTILDLSN 167 (247)
Q Consensus 142 ~~n~~~~~~~~~---l~~~~~L~~L~l~~ 167 (247)
+.|-. ++|.. +...|.|.+||+-+
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecc
Confidence 98854 34443 44567888888755
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.80 E-value=8.2e-05 Score=52.37 Aligned_cols=124 Identities=17% Similarity=0.249 Sum_probs=53.9
Q ss_pred CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhc
Q 044683 19 SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATG 98 (247)
Q Consensus 19 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 98 (247)
..+|.++.+|+.+.+.. .+. .++...+..+.+++.+.+..+ +......+|..+++++.+.+.+ .+. .++...+..
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~ 79 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSN 79 (129)
T ss_dssp TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT
T ss_pred HHHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccc
Confidence 34566666777777764 455 566666665667777777664 4434445666666777777755 333 455555655
Q ss_pred CCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683 99 CFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160 (247)
Q Consensus 99 ~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 160 (247)
+++++.+.+..+ ++.+. ...+..+ .++.+.+.. .+.......|.++++|
T Consensus 80 ~~~l~~i~~~~~-~~~i~----------~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIG----------SSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT--BEEH----------TTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccccCcc-ccEEc----------hhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666665443 33321 2234444 566665554 2222333455555444
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=1.9e-05 Score=62.41 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=92.6
Q ss_pred CCcEEEccCCcccc--ccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCcccc-CChHhhhcCCCCCE
Q 044683 3 SLKVLDASSNQLTG--NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNG-SIPSSFFDMKMLKS 79 (247)
Q Consensus 3 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 79 (247)
.++++|+.+|.|+. .+..-+.+++.++.|++++|.+...+ ........+|+.+.+.+..+.- .....+..+|.++.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 46789999998875 23444567999999999999887322 2221225689999998887642 22344567888888
Q ss_pred EeccCCcccccCc--hh-HhhcCCCccEEEccCCC----------------ccEEEccCCcCCC-CCchhhhcccCcCee
Q 044683 80 LDISHNQLTGEIP--ER-MATGCFSLEILALSNNS----------------LQGLYLSDNRLFG-RIPRWLGNLLALEDI 139 (247)
Q Consensus 80 L~l~~n~~~~~~~--~~-~~~~~~~L~~l~l~~n~----------------l~~l~l~~n~~~~-~~~~~~~~~~~L~~L 139 (247)
+.++.|.+. .+- .. +-..-+.++.+....|. +..+.+..|.+.. ...+....++.+.-|
T Consensus 151 lHmS~N~~r-q~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 151 LHMSDNSLR-QLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhccchhh-hhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 888888543 111 00 00001133333333331 1122233332221 112223334455566
Q ss_pred eCcCCcccccC-chhhhCCCCCCEEEccCCcCc
Q 044683 140 MMPNNNLQGPI-PIEFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 140 ~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~ 171 (247)
+++.+++.+-- -+.+.+++.|+.|.++++.+.
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 66666665221 255666677777777776665
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.78 E-value=6.2e-05 Score=58.90 Aligned_cols=79 Identities=16% Similarity=0.044 Sum_probs=49.4
Q ss_pred EEEccCCcCCC----CCchhhhcccCcCeeeCcCCcccccCch----hhh--CCCCCCEEEccCCcCcCCCC-CCC-C--
Q 044683 114 GLYLSDNRLFG----RIPRWLGNLLALEDIMMPNNNLQGPIPI----EFC--QLELLTILDLSNNTIFGTLP-SCF-R-- 179 (247)
Q Consensus 114 ~l~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~l~--~~~~L~~L~l~~n~l~~~~~-~~~-~-- 179 (247)
.|++..|.++. .+...++.|+.|+.|.+.+|-++..... .+. ..++|..|-..+|.+.+..- ..+ .
T Consensus 218 vLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~ 297 (388)
T COG5238 218 VLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEF 297 (388)
T ss_pred eeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhh
Confidence 45555555543 2345677888999999999988754322 222 36888999999998875432 211 1
Q ss_pred ---CCC---eEeccCCccc
Q 044683 180 ---TSS---FVKKQDRRTV 192 (247)
Q Consensus 180 ---~~~---~L~l~~n~~~ 192 (247)
... .+.+.+|++.
T Consensus 298 e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 298 EQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhcccHHHHHHHHccCcch
Confidence 111 5666777776
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=0.00011 Score=61.52 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=31.3
Q ss_pred CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683 24 ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN 85 (247)
Q Consensus 24 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 85 (247)
.+.+++.|++++|.++ .+|. + +.+|++|.++++.--..+|..+ .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV-L---PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC-C---CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 3566677777777666 6662 1 3457777776643322444433 245667777666
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=3.4e-05 Score=69.29 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=90.5
Q ss_pred CCcEEEccCCcccccc-Cccc-cCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 3 SLKVLDASSNQLTGNI-SPNL-CELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~-~~~~-~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+|++|++++...-... +..+ .-+|.|+.|.+.+-.+...-=..++..+|+|..||++++.++.. ..+.++.+|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5788888886433221 1222 33899999999987665221123445578999999999999843 678899999999
Q ss_pred eccCCcccc-cCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC
Q 044683 81 DISHNQLTG-EIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI 150 (247)
Q Consensus 81 ~l~~n~~~~-~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 150 (247)
.+.+=.+.. ..-..+|. +.+|+.||+++..-..-. .+-..-.+.-..++.|+.||.+++.+...+
T Consensus 201 ~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~----~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDT----KIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred hccCCCCCchhhHHHHhc-ccCCCeeeccccccccch----HHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 888766551 12235665 889999988875332110 000001112234779999999998887544
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.46 E-value=0.00061 Score=57.16 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=50.3
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCC-ceeecCCchhhhhcccccEEEccCC-ccccCChHhhhcCCCCCE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNN-DLRGHIPVEIGTYLLVFIHLNLSRN-AFNGSIPSSFFDMKMLKS 79 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 79 (247)
..++.|++++|.++ .+|. + -..|+.|.++++ .++ .+|..+ .++|++|++++| .+. .+|. +|+.
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLt-sLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLT-TLPGSI---PEGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcc-cCCchh---hhhhhheEccCccccc-cccc------ccce
Confidence 56889999999888 4552 2 136999999874 454 777655 458999999998 544 4453 4777
Q ss_pred EeccCCcc
Q 044683 80 LDISHNQL 87 (247)
Q Consensus 80 L~l~~n~~ 87 (247)
|++..+..
T Consensus 117 L~L~~n~~ 124 (426)
T PRK15386 117 LEIKGSAT 124 (426)
T ss_pred EEeCCCCC
Confidence 77776654
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.41 E-value=0.00036 Score=49.03 Aligned_cols=101 Identities=17% Similarity=0.239 Sum_probs=63.4
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|+.+.+.. .+.......|..+..++.+.+.++ +. .++...+..+++++.+.+.+ .+.......|..+++++.+.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 4678888875 566566778888989999999885 66 77777777787899999976 44435556788899999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSN 109 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 109 (247)
+..+ +. .++...+... .++.+.+..
T Consensus 88 ~~~~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 88 IPSN-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ETTT--B-EEHTTTTTT--T--EEE-TT
T ss_pred cCcc-cc-EEchhhhcCC-CceEEEECC
Confidence 9775 55 6777777655 777666543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.25 E-value=0.0002 Score=55.53 Aligned_cols=112 Identities=23% Similarity=0.165 Sum_probs=61.6
Q ss_pred cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC--ccccCChHhhhcCCCCCEEeccCCcccccCchhH
Q 044683 18 ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN--AFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERM 95 (247)
Q Consensus 18 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 95 (247)
+......+..++.+++.+..++ .+.. +.. +++|++|.++.| ++.+..+.-...+|+|+++++++|++. . +..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~~-~P~-Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl 109 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLTN-FPK-LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTL 109 (260)
T ss_pred cccccccccchhhhhhhcccee-eccc-CCC-cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-cccc
Confidence 3444445666777777776666 3322 222 778888888888 544433333445688888888888876 2 2222
Q ss_pred h--hcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeC
Q 044683 96 A--TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMM 141 (247)
Q Consensus 96 ~--~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 141 (247)
. ..+.+|..|++..|..+.++ . --...+.-+++|++++=
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~--d-----yre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLD--D-----YREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcchhhhhcccCCccccc--c-----HHHHHHHHhhhhccccc
Confidence 1 22445555555555444311 1 11223445566666543
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00016 Score=56.08 Aligned_cols=104 Identities=23% Similarity=0.255 Sum_probs=62.0
Q ss_pred cccccEEEccCCccccCChHhhhcCCCCCEEeccCC--cccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCc
Q 044683 50 LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN--QLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP 127 (247)
Q Consensus 50 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~ 127 (247)
...|+.+.+.+..++.. ..+-.+++|+.|.++.| ++.+.++.-+ ..+|+|+++++++|.++.+. .-
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~ls---------tl 109 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLS---------TL 109 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccccc---------cc
Confidence 45666677767666521 23446778888888888 4443333322 33578887777777765421 12
Q ss_pred hhhhcccCcCeeeCcCCcccccC---chhhhCCCCCCEEEc
Q 044683 128 RWLGNLLALEDIMMPNNNLQGPI---PIEFCQLELLTILDL 165 (247)
Q Consensus 128 ~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l 165 (247)
..+..+.+|..|++.+|..+... -..+.-+++|++||-
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 23556677788888888666422 133445667766653
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=3.6e-05 Score=60.36 Aligned_cols=99 Identities=24% Similarity=0.266 Sum_probs=44.3
Q ss_pred cccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhh
Q 044683 52 VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLG 131 (247)
Q Consensus 52 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~ 131 (247)
+.+.|++.+|.+..+ .....++.|+.|.++-|.++ .+.. +..|.+|+++.+..|.|..++ --..+.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sld---------EL~YLk 85 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLD---------ELEYLK 85 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHH---------HHHHHh
Confidence 444555555555422 22334555555555555554 3322 222444443333333332221 122345
Q ss_pred cccCcCeeeCcCCcccccCc-----hhhhCCCCCCEEE
Q 044683 132 NLLALEDIMMPNNNLQGPIP-----IEFCQLELLTILD 164 (247)
Q Consensus 132 ~~~~L~~L~l~~n~~~~~~~-----~~l~~~~~L~~L~ 164 (247)
++++|+.|+|..|...+.-+ ..+..+|+|+.||
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 55666666666665443321 2344455555554
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=8.2e-05 Score=58.42 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=71.9
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChH--hhhcCCCCCEE
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPS--SFFDMKMLKSL 80 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L 80 (247)
+++.|++.+|+++++ ....+|+.|++|.|+-|.|+ .+.. +.. +..|++|+|..|.|.. +.. -+.++++|+.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p-l~r-CtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP-LQR-CTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh-HHH-HHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 456788888888854 33456899999999999998 5543 333 7889999999999873 322 24678999999
Q ss_pred eccCCcccccCchh----HhhcCCCccEEE
Q 044683 81 DISHNQLTGEIPER----MATGCFSLEILA 106 (247)
Q Consensus 81 ~l~~n~~~~~~~~~----~~~~~~~L~~l~ 106 (247)
++..|.-.+..+.. +.+.+|+|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99998776555543 345578888776
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.90 E-value=0.00048 Score=32.36 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=17.3
Q ss_pred CCceEeccCCeeeecCCccccCC
Q 044683 211 RPRRLAVEGFDLVLELPQIVCGL 233 (247)
Q Consensus 211 ~L~~L~l~~n~l~~~~~~~~~~l 233 (247)
+|++||+++|+++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4789999999999 677767764
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0033 Score=29.41 Aligned_cols=12 Identities=58% Similarity=0.700 Sum_probs=6.2
Q ss_pred CcEEEccCCccc
Q 044683 4 LKVLDASSNQLT 15 (247)
Q Consensus 4 L~~L~l~~n~l~ 15 (247)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555555
No 69
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.61 E-value=0.00013 Score=62.86 Aligned_cols=168 Identities=23% Similarity=0.217 Sum_probs=100.3
Q ss_pred CcEEEccCCccccccC----ccccCCCCCcEEEccCCceeecCCchhhhhc----ccccEEEccCCcccc----CChHhh
Q 044683 4 LKVLDASSNQLTGNIS----PNLCELVLLRELYIDNNDLRGHIPVEIGTYL----LVFIHLNLSRNAFNG----SIPSSF 71 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l----~~L~~L~l~~n~l~~----~~~~~~ 71 (247)
++.+++.+|.+..... ..+.....|+.|++++|.+.+.....+...+ ..+++|++..|.++. .++..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5667778887765433 3445577888899999888754444443332 346677788887764 344455
Q ss_pred hcCCCCCEEeccCCcccc----cCchhHh---hcCCCccEEEccCCCcc-------------------EEEccCCcCCCC
Q 044683 72 FDMKMLKSLDISHNQLTG----EIPERMA---TGCFSLEILALSNNSLQ-------------------GLYLSDNRLFGR 125 (247)
Q Consensus 72 ~~l~~L~~L~l~~n~~~~----~~~~~~~---~~~~~L~~l~l~~n~l~-------------------~l~l~~n~~~~~ 125 (247)
.....++.++++.|.+.. .++.... ....+++++.+.+|.++ .+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556778888888887641 1111111 12445666666666433 456666665543
Q ss_pred C----chhhhcc-cCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCc
Q 044683 126 I----PRWLGNL-LALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 126 ~----~~~~~~~-~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~ 171 (247)
. ...+... ..+++++++.|.++.. ....+..++.++++.+++|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 2 1223333 4567777777777643 2344555667777777777775
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.35 E-value=0.0085 Score=51.83 Aligned_cols=61 Identities=28% Similarity=0.206 Sum_probs=25.5
Q ss_pred cccccEEEccCCc-cccCChHhhhc-CCCCCEEeccCCc-ccccCchhHhhcCCCccEEEccCC
Q 044683 50 LLVFIHLNLSRNA-FNGSIPSSFFD-MKMLKSLDISHNQ-LTGEIPERMATGCFSLEILALSNN 110 (247)
Q Consensus 50 l~~L~~L~l~~n~-l~~~~~~~~~~-l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~l~l~~n 110 (247)
+.+|+.++++.+. ++...-..++. +++|++|.+..+. +++..-..+...++.|+.++++++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 3445555555544 33222222222 4455555544443 332222233334445555555443
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.39 E-value=0.035 Score=26.93 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=9.9
Q ss_pred CCcEEEccCCceeecCCchhh
Q 044683 27 LLRELYIDNNDLRGHIPVEIG 47 (247)
Q Consensus 27 ~L~~L~l~~n~i~~~~~~~~~ 47 (247)
+|+.|++++|.++ .+|+..+
T Consensus 3 ~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 3 NLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCC-cCCHHHc
Confidence 4455555555554 4444443
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.39 E-value=0.035 Score=26.93 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=9.9
Q ss_pred CCcEEEccCCceeecCCchhh
Q 044683 27 LLRELYIDNNDLRGHIPVEIG 47 (247)
Q Consensus 27 ~L~~L~l~~n~i~~~~~~~~~ 47 (247)
+|+.|++++|.++ .+|+..+
T Consensus 3 ~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 3 NLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCEEECCCCcCC-cCCHHHc
Confidence 4455555555554 4444443
No 73
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.34 E-value=0.046 Score=26.52 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=13.1
Q ss_pred CCCCEEeccCCcccccCchhHh
Q 044683 75 KMLKSLDISHNQLTGEIPERMA 96 (247)
Q Consensus 75 ~~L~~L~l~~n~~~~~~~~~~~ 96 (247)
++|++|++++|.+. .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 6666554
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.34 E-value=0.046 Score=26.52 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=13.1
Q ss_pred CCCCEEeccCCcccccCchhHh
Q 044683 75 KMLKSLDISHNQLTGEIPERMA 96 (247)
Q Consensus 75 ~~L~~L~l~~n~~~~~~~~~~~ 96 (247)
++|++|++++|.+. .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 6666554
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.17 E-value=0.036 Score=24.02 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=3.3
Q ss_pred ccEEEccCCcc
Q 044683 53 FIHLNLSRNAF 63 (247)
Q Consensus 53 L~~L~l~~n~l 63 (247)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444433
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.92 E-value=0.06 Score=46.55 Aligned_cols=63 Identities=16% Similarity=0.036 Sum_probs=33.9
Q ss_pred CCCCCcEEEccCCc-eeecCCchhhhhcccccEEEccCCc-cccCC-hHhhhcCCCCCEEeccCCc
Q 044683 24 ELVLLRELYIDNND-LRGHIPVEIGTYLLVFIHLNLSRNA-FNGSI-PSSFFDMKMLKSLDISHNQ 86 (247)
Q Consensus 24 ~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~ 86 (247)
.+++++.++++... +++..-..+...+++|++|.+.++. ++... ......++.|++++++.+.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 35666677776665 4433333333335667777666555 33222 1222345667777777654
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.87 E-value=0.00071 Score=58.39 Aligned_cols=186 Identities=22% Similarity=0.195 Sum_probs=100.9
Q ss_pred CcEEEccCCceeecCCchhhhh---cccccEEEccCCccccCChHhhh----cC-CCCCEEeccCCcccccCchhHhhc-
Q 044683 28 LRELYIDNNDLRGHIPVEIGTY---LLVFIHLNLSRNAFNGSIPSSFF----DM-KMLKSLDISHNQLTGEIPERMATG- 98 (247)
Q Consensus 28 L~~L~l~~n~i~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~~~~~~~~~~~~~- 98 (247)
+..+.+.+|.+.+.....+... .+.|+.|++++|.+.......+. .. +.++++++..+.+++.-...+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5667777777764433333322 45677778888877643222221 21 446666666666653222222111
Q ss_pred --CCCccEEEccCCCccEEEccCCcCCCCCchhhh----cccCcCeeeCcCCccccc----CchhhhCCCC-CCEEEccC
Q 044683 99 --CFSLEILALSNNSLQGLYLSDNRLFGRIPRWLG----NLLALEDIMMPNNNLQGP----IPIEFCQLEL-LTILDLSN 167 (247)
Q Consensus 99 --~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~----~~~~L~~L~l~~n~~~~~----~~~~l~~~~~-L~~L~l~~ 167 (247)
...++.+++..|.+..... -.++..+. ...++++|.+.+|.++.. ....+...+. +..+++.+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~------~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGL------LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred hcccchhHHHHHhcccchhhh------HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 3444544444444321100 01233333 467788888888887732 2344555555 67788888
Q ss_pred CcCcCC----CCCCCCCC----CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683 168 NTIFGT----LPSCFRTS----SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL 224 (247)
Q Consensus 168 n~l~~~----~~~~~~~~----~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~ 224 (247)
|.+.+. ....+... ..++++.|.+++....++ +..+.. .++++.+++|.++.
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L-----~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL-----AEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH-----HHHHhhhHHHHHhhcccCcccc
Confidence 888643 12223222 278888888886654432 222333 68888888887764
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=0.015 Score=43.75 Aligned_cols=79 Identities=14% Similarity=0.036 Sum_probs=34.6
Q ss_pred CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCC-hHhhh-cCCCCCEEeccCC-cccccCchhHhhcCCCcc
Q 044683 27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSI-PSSFF-DMKMLKSLDISHN-QLTGEIPERMATGCFSLE 103 (247)
Q Consensus 27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~ 103 (247)
.++.++-++..|..+.-+.+.. ++.++.|.+.+|.--+.- -.-++ ..++|+.|++++| +|+ +..-.....+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence 3455555665555333333333 555555655555322110 00011 2356666666655 344 22222222345555
Q ss_pred EEEc
Q 044683 104 ILAL 107 (247)
Q Consensus 104 ~l~l 107 (247)
.|.+
T Consensus 180 ~L~l 183 (221)
T KOG3864|consen 180 RLHL 183 (221)
T ss_pred HHHh
Confidence 5443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.48 E-value=0.0035 Score=48.25 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=41.1
Q ss_pred ccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCC
Q 044683 22 LCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFS 101 (247)
Q Consensus 22 ~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 101 (247)
+......+.||++.|++. .....+.. +..+..|+++.|.+. ..|..+.+...+.++++..|..+ ..|.+... .++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~-~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k-~~~ 112 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSI-LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK-EPH 112 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHH-HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc-cCC
Confidence 344455555555555554 33333332 444555555555554 44555555555555555555554 44544332 445
Q ss_pred ccEEEccCC
Q 044683 102 LEILALSNN 110 (247)
Q Consensus 102 L~~l~l~~n 110 (247)
++.++.-.+
T Consensus 113 ~k~~e~k~~ 121 (326)
T KOG0473|consen 113 PKKNEQKKT 121 (326)
T ss_pred cchhhhccC
Confidence 544444443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.98 E-value=0.036 Score=26.33 Aligned_cols=15 Identities=47% Similarity=0.638 Sum_probs=7.0
Q ss_pred CCCcEEEccCCcccc
Q 044683 2 TSLKVLDASSNQLTG 16 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~ 16 (247)
++|++|++++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455555555555544
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.73 E-value=0.017 Score=44.64 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=60.2
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
..+.||++.|.+. .....|.-+..+..|+++.|.+. ..|+.+.+ ...++.+++..|..+ ..|.++...+.+++++.
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 3456777777665 34455666677778888888887 78888776 667777888777777 67888888888888887
Q ss_pred cCCccc
Q 044683 83 SHNQLT 88 (247)
Q Consensus 83 ~~n~~~ 88 (247)
-.+.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 777654
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=0.2 Score=37.95 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=23.2
Q ss_pred cccEEEccCCccccCChHhhhcCCCCCEEeccCCc
Q 044683 52 VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQ 86 (247)
Q Consensus 52 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 86 (247)
.++.++.++..+..+.-..+..+++++.|.+.++.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 35667777777765555666667777777666654
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.80 E-value=1.4 Score=21.44 Aligned_cols=14 Identities=50% Similarity=0.437 Sum_probs=11.1
Q ss_pred CCCCEEEccCCcCc
Q 044683 158 ELLTILDLSNNTIF 171 (247)
Q Consensus 158 ~~L~~L~l~~n~l~ 171 (247)
++|++|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56788888888886
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.14 E-value=1.4 Score=21.74 Aligned_cols=14 Identities=50% Similarity=0.446 Sum_probs=10.4
Q ss_pred CCCCEEEccCCcCc
Q 044683 158 ELLTILDLSNNTIF 171 (247)
Q Consensus 158 ~~L~~L~l~~n~l~ 171 (247)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888888775
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=76.61 E-value=0.97 Score=38.19 Aligned_cols=140 Identities=17% Similarity=0.128 Sum_probs=75.5
Q ss_pred CCCCCcEEEccCCc-eeecCCchhhhhcccccEEEccCCc-cccCChHhh-hcCCCCCEEeccCCcccccC-chhHhhcC
Q 044683 24 ELVLLRELYIDNND-LRGHIPVEIGTYLLVFIHLNLSRNA-FNGSIPSSF-FDMKMLKSLDISHNQLTGEI-PERMATGC 99 (247)
Q Consensus 24 ~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~-~~~~~~~~ 99 (247)
.+..+++++.+++. +++.+-..++...++|+.+.+..+. ++......+ .+++.|+.+++..+...... -......+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 46788888888753 4433444556667789999888875 332222222 24677888888777543111 11223346
Q ss_pred CCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc-cCchhhhCCCCCCEEEccCC
Q 044683 100 FSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG-PIPIEFCQLELLTILDLSNN 168 (247)
Q Consensus 100 ~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n 168 (247)
+.|+.+.++.+.+-+ +. ++. .....-.....++.+.+++++... ..-+.+..+++|+-+++-+.
T Consensus 372 ~~lr~lslshce~it-D~---gi~-~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 372 PRLRVLSLSHCELIT-DE---GIR-HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred chhccCChhhhhhhh-hh---hhh-hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 778877777653310 00 000 001111234567777777776542 22244555667776665444
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.62 E-value=2.1 Score=20.80 Aligned_cols=17 Identities=59% Similarity=0.900 Sum_probs=9.6
Q ss_pred CCCEEeccCCcccccCch
Q 044683 76 MLKSLDISHNQLTGEIPE 93 (247)
Q Consensus 76 ~L~~L~l~~n~~~~~~~~ 93 (247)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4555666666665 5554
No 87
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=61.60 E-value=6.5 Score=33.49 Aligned_cols=153 Identities=19% Similarity=0.112 Sum_probs=85.8
Q ss_pred CCCcEEEccCCc-cccccCcc-ccCCCCCcEEEccCCc-eeecCCchhhhhcccccEEEccCCccccC--ChHhhhcCCC
Q 044683 2 TSLKVLDASSNQ-LTGNISPN-LCELVLLRELYIDNND-LRGHIPVEIGTYLLVFIHLNLSRNAFNGS--IPSSFFDMKM 76 (247)
Q Consensus 2 ~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~ 76 (247)
..|+.++.+++. ++...-.+ -.+..+|+++.++.++ +++..-..+..+.++|+.+++..+..... +...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 346777777663 33222222 3457899999999876 44333345556678899999988866422 2222235788
Q ss_pred CCEEeccCCcccccCc----hhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc-cccCc
Q 044683 77 LKSLDISHNQLTGEIP----ERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL-QGPIP 151 (247)
Q Consensus 77 L~~L~l~~n~~~~~~~----~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~-~~~~~ 151 (247)
|+.+.++++.....-. ....+....+..+.++++.+. ++..-+.+..+++|+.+++.+++- +.+..
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i---------~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI---------TDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc---------hHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 9999999875421110 111122344555554444332 222334567788899888888743 22211
Q ss_pred hhh-hCCCCCCEE
Q 044683 152 IEF-CQLELLTIL 163 (247)
Q Consensus 152 ~~l-~~~~~L~~L 163 (247)
..+ .++|++++.
T Consensus 445 ~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 445 SRFATHLPNIKVH 457 (483)
T ss_pred HHHHhhCccceeh
Confidence 222 356666543
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.32 E-value=8.3 Score=33.97 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=28.8
Q ss_pred CCCCcEEEccCCceeecCCc--hhhhhcccccEEEccCC--ccccCChHhhh--cCCCCCEEeccCCccc
Q 044683 25 LVLLRELYIDNNDLRGHIPV--EIGTYLLVFIHLNLSRN--AFNGSIPSSFF--DMKMLKSLDISHNQLT 88 (247)
Q Consensus 25 l~~L~~L~l~~n~i~~~~~~--~~~~~l~~L~~L~l~~n--~l~~~~~~~~~--~l~~L~~L~l~~n~~~ 88 (247)
.+.+..+.+++|++. .+.. .+...-|.|++|+|++| .+.. ..++. +...|++|.+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccc
Confidence 345555666666655 2221 22222456666666666 2221 11121 2234566666666654
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.83 E-value=9.4 Score=18.15 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=7.4
Q ss_pred CCCCcEEEccCC
Q 044683 1 MTSLKVLDASSN 12 (247)
Q Consensus 1 l~~L~~L~l~~n 12 (247)
+++|++|++++|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 355666666666
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.73 E-value=9.7 Score=33.60 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=6.7
Q ss_pred cCeeeCcCCccc
Q 044683 136 LEDIMMPNNNLQ 147 (247)
Q Consensus 136 L~~L~l~~n~~~ 147 (247)
|+.|.+.+|++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 455555666554
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.48 E-value=20 Score=38.04 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=26.1
Q ss_pred EccCCccccccCccccCCCCCcEEEccCCcee
Q 044683 8 DASSNQLTGNISPNLCELVLLRELYIDNNDLR 39 (247)
Q Consensus 8 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 39 (247)
||++|.|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888766777888888888888888877
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.37 E-value=39 Score=36.11 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=25.0
Q ss_pred EccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 116 YLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 116 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
+|++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 356677765556677888899999999998873
Done!