Query 044683
Match_columns 247
No_of_seqs 198 out of 2994
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:41:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.5E-31 1.2E-35 238.9 23.5 239 3-243 369-713 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-31 1.3E-35 215.0 18.6 227 2-241 50-298 (313)
3 3rgz_A Protein brassinosteroid 100.0 5E-30 1.7E-34 231.4 24.0 145 3-149 395-553 (768)
4 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-29 1.3E-33 203.2 16.0 214 1-225 75-307 (313)
5 3v47_A TOLL-like receptor 5B a 100.0 5.4E-29 1.9E-33 212.0 16.9 238 2-240 54-401 (455)
6 4fcg_A Uncharacterized protein 100.0 1.3E-28 4.3E-33 201.4 16.6 213 2-239 81-306 (328)
7 3v47_A TOLL-like receptor 5B a 100.0 3.3E-28 1.1E-32 207.1 18.8 240 2-241 30-378 (455)
8 2id5_A Lingo-1, leucine rich r 100.0 7.1E-28 2.4E-32 206.4 15.7 164 3-168 33-210 (477)
9 1xku_A Decorin; proteoglycan, 100.0 2.2E-26 7.6E-31 188.2 22.7 230 2-240 76-325 (330)
10 2id5_A Lingo-1, leucine rich r 99.9 5.6E-27 1.9E-31 200.8 18.0 238 1-240 55-326 (477)
11 4eco_A Uncharacterized protein 99.9 1E-27 3.4E-32 212.1 13.7 151 1-155 248-423 (636)
12 3t6q_A CD180 antigen; protein- 99.9 7.7E-27 2.6E-31 205.4 18.9 234 3-239 255-528 (606)
13 3o6n_A APL1; leucine-rich repe 99.9 2.5E-26 8.6E-31 192.0 21.0 222 2-240 69-345 (390)
14 2ft3_A Biglycan; proteoglycan, 99.9 1.6E-26 5.3E-31 189.3 19.0 227 3-239 55-325 (332)
15 3t6q_A CD180 antigen; protein- 99.9 6E-27 2.1E-31 206.1 17.1 227 2-240 278-553 (606)
16 3oja_B Anopheles plasmodium-re 99.9 3.5E-26 1.2E-30 201.0 20.9 222 2-240 75-351 (597)
17 2z80_A TOLL-like receptor 2, v 99.9 2.1E-27 7.3E-32 196.0 12.1 232 2-240 52-307 (353)
18 1xku_A Decorin; proteoglycan, 99.9 6E-26 2E-30 185.6 20.2 214 2-233 52-286 (330)
19 4eco_A Uncharacterized protein 99.9 8.1E-27 2.8E-31 206.3 15.0 188 1-192 205-446 (636)
20 4g8a_A TOLL-like receptor 4; l 99.9 3.8E-26 1.3E-30 201.4 19.1 81 151-240 487-573 (635)
21 3zyj_A Leucine-rich repeat-con 99.9 4.5E-26 1.5E-30 193.4 18.7 209 2-223 64-292 (440)
22 3zyi_A Leucine-rich repeat-con 99.9 7.3E-26 2.5E-30 192.7 19.9 210 2-224 75-304 (452)
23 1ziw_A TOLL-like receptor 3; i 99.9 6.6E-26 2.3E-30 202.0 19.1 236 3-240 26-359 (680)
24 2z66_A Variable lymphocyte rec 99.9 2.9E-26 1E-30 185.5 15.3 191 2-195 28-239 (306)
25 4fcg_A Uncharacterized protein 99.9 7.5E-26 2.6E-30 184.9 16.1 199 1-224 103-315 (328)
26 1ozn_A Reticulon 4 receptor; N 99.9 3.6E-25 1.2E-29 177.4 19.6 202 2-224 32-239 (285)
27 3o6n_A APL1; leucine-rich repe 99.9 6.6E-26 2.2E-30 189.5 15.8 224 2-240 45-324 (390)
28 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-25 4.6E-30 194.1 18.1 127 113-240 327-474 (520)
29 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-25 1.2E-29 194.8 19.9 84 3-87 57-140 (606)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.2E-25 1.8E-29 192.3 20.5 83 2-88 76-159 (562)
31 1ziw_A TOLL-like receptor 3; i 99.9 3.8E-25 1.3E-29 197.1 19.9 232 4-240 6-302 (680)
32 3j0a_A TOLL-like receptor 5; m 99.9 1.5E-25 5.1E-30 204.1 17.5 149 2-150 24-190 (844)
33 2z62_A TOLL-like receptor 4, v 99.9 2E-25 7E-30 178.0 16.2 203 3-225 29-239 (276)
34 3rfs_A Internalin B, repeat mo 99.9 1.8E-25 6.1E-30 178.1 15.8 207 2-238 41-250 (272)
35 2z66_A Variable lymphocyte rec 99.9 1.3E-25 4.5E-30 181.7 14.8 227 1-235 51-299 (306)
36 4ecn_A Leucine-rich repeat pro 99.9 1.6E-25 5.5E-30 202.7 17.0 234 1-240 447-782 (876)
37 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-25 1.4E-29 177.0 17.4 213 5-241 14-232 (285)
38 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-25 3.7E-30 194.7 14.8 124 2-130 21-160 (520)
39 4ecn_A Leucine-rich repeat pro 99.9 2.9E-25 1E-29 201.0 17.9 233 1-241 490-813 (876)
40 3j0a_A TOLL-like receptor 5; m 99.9 4.8E-25 1.6E-29 200.8 19.1 229 2-240 48-368 (844)
41 3oja_B Anopheles plasmodium-re 99.9 2.3E-25 8E-30 195.8 16.1 224 2-240 51-330 (597)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.2E-25 1.1E-29 193.6 16.1 124 2-130 52-191 (562)
43 2z81_A CD282 antigen, TOLL-lik 99.9 1.5E-24 5.3E-29 188.6 19.5 111 130-241 383-504 (549)
44 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-24 8.7E-29 176.1 18.4 219 3-233 34-287 (332)
45 3oja_A Leucine-rich immune mol 99.9 4.5E-25 1.5E-29 189.4 13.6 170 2-193 34-205 (487)
46 3zyi_A Leucine-rich repeat-con 99.9 3.1E-24 1.1E-28 182.7 18.1 193 1-194 98-305 (452)
47 3zyj_A Leucine-rich repeat-con 99.9 2.9E-24 1E-28 182.2 17.3 192 1-193 87-293 (440)
48 2z63_A TOLL-like receptor 4, v 99.9 3.8E-24 1.3E-28 186.8 18.2 38 2-39 52-89 (570)
49 3o53_A Protein LRIM1, AGAP0063 99.9 6.2E-25 2.1E-29 178.7 12.3 169 3-193 35-205 (317)
50 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-25 8.4E-30 181.1 9.7 206 1-241 57-269 (317)
51 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-24 1.1E-28 188.7 16.4 229 2-240 285-551 (606)
52 1wwl_A Monocyte differentiatio 99.9 1.3E-24 4.3E-29 176.5 12.5 192 24-239 93-301 (312)
53 2o6q_A Variable lymphocyte rec 99.9 4E-23 1.4E-27 164.3 20.0 198 3-224 17-219 (270)
54 1wwl_A Monocyte differentiatio 99.9 3.5E-25 1.2E-29 179.8 8.1 202 1-224 94-310 (312)
55 4g8a_A TOLL-like receptor 4; l 99.9 2.2E-23 7.5E-28 183.8 19.3 90 126-224 486-581 (635)
56 2z81_A CD282 antigen, TOLL-lik 99.9 2.9E-24 9.8E-29 186.9 12.8 169 2-173 26-211 (549)
57 4fmz_A Internalin; leucine ric 99.9 8E-23 2.7E-27 168.1 20.6 223 1-240 87-339 (347)
58 2o6q_A Variable lymphocyte rec 99.9 6.2E-23 2.1E-27 163.2 18.9 183 2-196 37-222 (270)
59 4fmz_A Internalin; leucine ric 99.9 1E-22 3.5E-27 167.4 20.7 226 1-240 65-317 (347)
60 2z62_A TOLL-like receptor 4, v 99.9 1E-23 3.6E-28 168.1 14.3 211 6-240 11-230 (276)
61 4glp_A Monocyte differentiatio 99.9 5.1E-24 1.8E-28 172.7 10.9 84 26-110 91-179 (310)
62 2z63_A TOLL-like receptor 4, v 99.9 2.5E-23 8.7E-28 181.6 16.0 177 2-189 28-210 (570)
63 3m19_A Variable lymphocyte rec 99.9 5.6E-23 1.9E-27 161.8 16.4 211 3-231 15-229 (251)
64 1p9a_G Platelet glycoprotein I 99.9 9.5E-23 3.2E-27 163.8 17.7 196 1-224 9-209 (290)
65 3bz5_A Internalin-J, INLJ; leu 99.9 1.8E-22 6.1E-27 171.9 20.3 174 2-193 42-226 (457)
66 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-22 8.1E-27 171.1 19.8 177 1-197 63-251 (457)
67 3rfs_A Internalin B, repeat mo 99.9 4.8E-23 1.7E-27 164.0 14.5 181 1-199 62-242 (272)
68 2z80_A TOLL-like receptor 2, v 99.9 1.2E-23 4.2E-28 173.5 10.9 174 4-192 33-211 (353)
69 1o6v_A Internalin A; bacterial 99.9 3.3E-22 1.1E-26 170.8 20.0 225 1-240 67-337 (466)
70 2xwt_C Thyrotropin receptor; s 99.9 6.5E-23 2.2E-27 160.2 12.6 190 27-236 32-231 (239)
71 1o6v_A Internalin A; bacterial 99.9 9.1E-22 3.1E-26 168.1 20.8 119 114-239 247-380 (466)
72 3oja_A Leucine-rich immune mol 99.9 4.6E-23 1.6E-27 176.9 11.0 207 1-241 57-269 (487)
73 1p9a_G Platelet glycoprotein I 99.9 6.1E-22 2.1E-26 159.0 16.1 177 2-193 31-209 (290)
74 3goz_A Leucine-rich repeat-con 99.9 6E-23 2E-27 170.0 10.0 222 2-225 22-299 (362)
75 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.4E-26 158.0 17.2 188 2-224 41-231 (308)
76 3m19_A Variable lymphocyte rec 99.9 1.5E-21 5E-26 153.6 16.2 160 2-173 35-194 (251)
77 2xwt_C Thyrotropin receptor; s 99.9 2.8E-22 9.7E-27 156.5 11.3 195 2-221 31-237 (239)
78 1jl5_A Outer protein YOPM; leu 99.9 3.7E-21 1.3E-25 163.6 18.7 77 3-88 132-208 (454)
79 2o6s_A Variable lymphocyte rec 99.9 9E-22 3.1E-26 150.5 12.9 158 52-234 29-189 (208)
80 2ca6_A RAN GTPase-activating p 99.9 5.7E-23 1.9E-27 171.4 6.0 221 1-226 31-319 (386)
81 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-20 3.6E-25 166.0 20.1 212 4-240 42-290 (622)
82 4glp_A Monocyte differentiatio 99.9 5.1E-22 1.8E-26 161.0 10.9 204 2-224 91-308 (310)
83 1jl5_A Outer protein YOPM; leu 99.9 1.4E-20 4.7E-25 160.1 18.9 211 3-233 174-421 (454)
84 2ast_B S-phase kinase-associat 99.9 1.3E-21 4.4E-26 160.1 11.4 220 2-233 70-316 (336)
85 3goz_A Leucine-rich repeat-con 99.9 8.2E-22 2.8E-26 163.1 8.2 230 6-240 2-290 (362)
86 3g06_A SSPH2 (leucine-rich rep 99.8 1.4E-20 4.9E-25 165.2 15.7 199 2-234 81-308 (622)
87 2o6s_A Variable lymphocyte rec 99.8 1.3E-20 4.4E-25 144.0 13.6 176 5-199 10-185 (208)
88 3cvr_A Invasion plasmid antige 99.8 8.6E-21 2.9E-25 164.8 13.7 186 3-234 60-254 (571)
89 1h6u_A Internalin H; cell adhe 99.8 7.2E-20 2.5E-24 148.2 17.8 169 1-193 62-231 (308)
90 1z7x_W Ribonuclease inhibitor; 99.8 3.8E-22 1.3E-26 169.9 4.6 86 135-225 314-413 (461)
91 4ay9_X Follicle-stimulating ho 99.8 1.2E-20 4.2E-25 155.4 13.4 186 2-189 30-233 (350)
92 1z7x_W Ribonuclease inhibitor; 99.8 1.5E-22 5.3E-27 172.3 0.2 238 3-240 86-404 (461)
93 2v9t_B SLIT homolog 2 protein 99.8 4.6E-20 1.6E-24 142.2 13.7 152 5-171 14-165 (220)
94 2v70_A SLIT-2, SLIT homolog 2 99.8 9.4E-20 3.2E-24 140.5 15.3 153 5-171 14-166 (220)
95 4ay9_X Follicle-stimulating ho 99.8 5.2E-20 1.8E-24 151.6 12.8 104 5-113 12-117 (350)
96 2ast_B S-phase kinase-associat 99.8 1.5E-20 5E-25 153.8 9.2 196 1-199 92-313 (336)
97 3e6j_A Variable lymphocyte rec 99.8 4.4E-19 1.5E-23 137.6 15.4 154 27-196 20-176 (229)
98 4ezg_A Putative uncharacterize 99.8 2.2E-19 7.7E-24 136.0 12.3 151 24-192 42-194 (197)
99 2xot_A Amphoterin-induced prot 99.8 1.3E-19 4.4E-24 149.9 11.8 173 5-192 21-202 (361)
100 2ca6_A RAN GTPase-activating p 99.8 2.9E-20 9.8E-25 155.1 6.9 195 1-196 59-320 (386)
101 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.9E-23 140.0 15.5 166 2-193 46-214 (291)
102 1h6t_A Internalin B; cell adhe 99.8 7.5E-19 2.5E-23 141.1 14.1 181 9-226 31-216 (291)
103 1m9s_A Internalin B; cell inva 99.8 1.5E-18 5E-23 152.2 16.5 168 2-194 43-212 (605)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-18 3.9E-23 134.4 13.6 154 28-196 13-170 (220)
105 3e6j_A Variable lymphocyte rec 99.8 2.9E-18 9.9E-23 132.9 15.2 155 4-174 21-175 (229)
106 1m9s_A Internalin B; cell inva 99.8 5.9E-19 2E-23 154.7 12.0 193 7-234 26-221 (605)
107 2v9t_B SLIT homolog 2 protein 99.8 4.1E-18 1.4E-22 131.3 13.9 151 29-194 14-167 (220)
108 2xot_A Amphoterin-induced prot 99.8 8.8E-19 3E-23 144.9 10.8 158 2-171 39-202 (361)
109 1xeu_A Internalin C; cellular 99.8 1.1E-18 3.9E-23 138.0 8.1 164 4-194 21-187 (263)
110 4b8c_D Glucose-repressible alc 99.8 1.8E-19 6.2E-24 161.3 3.9 136 48-198 221-360 (727)
111 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.1E-22 131.6 13.2 149 1-174 40-188 (263)
112 4ezg_A Putative uncharacterize 99.7 3.1E-17 1.1E-21 124.2 12.2 147 50-224 43-195 (197)
113 3cvr_A Invasion plasmid antige 99.7 2.4E-17 8.4E-22 143.2 12.4 161 2-199 80-250 (571)
114 2ell_A Acidic leucine-rich nuc 99.7 1.7E-16 5.7E-21 117.0 13.5 134 25-171 23-160 (168)
115 2ell_A Acidic leucine-rich nuc 99.7 7.3E-17 2.5E-21 118.9 11.1 136 2-152 24-164 (168)
116 4b8c_D Glucose-repressible alc 99.7 3.6E-18 1.2E-22 152.9 4.3 154 17-189 215-369 (727)
117 1dce_A Protein (RAB geranylger 99.7 1E-19 3.5E-24 158.5 -5.6 197 23-239 346-565 (567)
118 1w8a_A SLIT protein; signaling 99.7 3.2E-17 1.1E-21 123.6 8.6 130 29-173 11-141 (192)
119 2je0_A Acidic leucine-rich nuc 99.7 1.4E-16 4.8E-21 115.1 11.0 129 26-167 17-149 (149)
120 1dce_A Protein (RAB geranylger 99.7 4E-19 1.4E-23 154.8 -3.0 177 2-197 349-551 (567)
121 1w8a_A SLIT protein; signaling 99.7 1.4E-16 5E-21 120.0 11.1 132 5-150 11-142 (192)
122 2wfh_A SLIT homolog 2 protein 99.7 4.6E-16 1.6E-20 117.3 12.3 127 29-171 13-139 (193)
123 2o6r_A Variable lymphocyte rec 99.7 8.4E-16 2.9E-20 114.2 11.9 131 28-173 9-139 (177)
124 1a9n_A U2A', U2A'; complex (nu 99.7 4.1E-16 1.4E-20 115.8 10.0 135 20-171 13-153 (176)
125 2wfh_A SLIT homolog 2 protein 99.6 2.6E-15 8.8E-20 113.2 12.8 128 5-148 13-140 (193)
126 3sb4_A Hypothetical leucine ri 99.6 1.1E-15 3.6E-20 124.8 10.9 184 42-239 84-326 (329)
127 3ogk_B Coronatine-insensitive 99.6 8.2E-17 2.8E-21 141.1 4.4 101 71-171 289-420 (592)
128 2o6r_A Variable lymphocyte rec 99.6 5.2E-15 1.8E-19 109.9 12.4 133 4-151 9-141 (177)
129 3ogk_B Coronatine-insensitive 99.6 2.8E-16 9.7E-21 137.6 5.9 209 19-236 286-540 (592)
130 1ds9_A Outer arm dynein; leuci 99.6 2.5E-17 8.6E-22 124.8 -0.8 151 3-171 19-185 (198)
131 1a9n_A U2A', U2A'; complex (nu 99.6 7.4E-15 2.5E-19 109.0 9.6 130 1-147 18-153 (176)
132 2p1m_B Transport inhibitor res 99.5 1.7E-15 5.9E-20 132.6 3.5 167 2-168 105-324 (594)
133 2je0_A Acidic leucine-rich nuc 99.5 1.6E-14 5.4E-19 104.2 7.7 113 50-175 16-130 (149)
134 3un9_A NLR family member X1; l 99.5 1.2E-15 4E-20 126.4 1.3 165 2-172 72-253 (372)
135 2p1m_B Transport inhibitor res 99.5 8.5E-15 2.9E-19 128.2 6.5 30 211-240 482-512 (594)
136 3g39_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 101.0 10.4 106 28-148 11-116 (170)
137 2r9u_A Variable lymphocyte rec 99.5 3.8E-13 1.3E-17 99.6 10.4 105 29-148 15-119 (174)
138 3g39_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 99.1 10.3 104 4-112 11-114 (170)
139 1ds9_A Outer arm dynein; leuci 99.4 2.9E-15 9.8E-20 113.4 -2.4 137 22-175 14-157 (198)
140 2r9u_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 98.3 10.0 103 5-112 15-117 (174)
141 3sb4_A Hypothetical leucine ri 99.4 6.5E-13 2.2E-17 108.2 9.7 166 25-194 100-312 (329)
142 4fdw_A Leucine rich hypothetic 99.4 8.8E-12 3E-16 104.1 16.4 212 4-234 137-369 (401)
143 4fdw_A Leucine rich hypothetic 99.3 5.8E-11 2E-15 99.2 15.7 203 3-223 158-383 (401)
144 2ifg_A High affinity nerve gro 99.3 6.6E-12 2.3E-16 102.9 8.9 103 6-113 12-116 (347)
145 3un9_A NLR family member X1; l 99.3 9E-13 3.1E-17 109.1 1.2 38 134-171 155-196 (372)
146 2ifg_A High affinity nerve gro 99.2 5.7E-11 1.9E-15 97.3 10.1 105 29-148 11-117 (347)
147 2ra8_A Uncharacterized protein 98.9 2.1E-09 7.3E-14 88.4 6.8 165 22-193 135-321 (362)
148 4fs7_A Uncharacterized protein 98.7 4.4E-07 1.5E-11 75.5 15.0 103 2-109 71-194 (394)
149 2ra8_A Uncharacterized protein 98.6 4.7E-08 1.6E-12 80.3 7.1 176 1-190 138-341 (362)
150 1io0_A Tropomodulin; LRR prote 98.6 2.2E-08 7.6E-13 74.5 4.4 119 19-147 29-164 (185)
151 1io0_A Tropomodulin; LRR prote 98.6 1.5E-08 5.1E-13 75.4 2.7 112 50-171 35-164 (185)
152 4gt6_A Cell surface protein; l 98.5 5.2E-06 1.8E-10 69.0 15.3 99 4-107 66-167 (394)
153 3e4g_A ATP synthase subunit S, 98.4 1.3E-07 4.3E-12 69.3 3.7 58 27-85 62-124 (176)
154 4fs7_A Uncharacterized protein 98.4 3.2E-06 1.1E-10 70.3 12.7 65 18-85 154-218 (394)
155 3rw6_A Nuclear RNA export fact 98.4 1.6E-07 5.6E-12 73.6 4.2 40 49-88 168-209 (267)
156 3rw6_A Nuclear RNA export fact 98.4 4.9E-07 1.7E-11 70.9 6.5 81 23-106 167-257 (267)
157 4h09_A Hypothetical leucine ri 98.1 3.8E-05 1.3E-09 63.3 12.7 36 129-165 305-340 (379)
158 4h09_A Hypothetical leucine ri 98.1 3E-05 1E-09 63.9 11.5 138 4-158 219-356 (379)
159 4gt6_A Cell surface protein; l 98.0 3.2E-05 1.1E-09 64.2 9.7 138 14-170 253-390 (394)
160 3e4g_A ATP synthase subunit S, 97.9 9.4E-06 3.2E-10 59.3 4.6 88 51-147 61-153 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 8.8E-05 3E-09 55.2 5.0 119 22-147 37-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 6E-05 2E-09 56.1 1.8 113 51-170 41-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00067 2.3E-08 47.0 6.1 56 30-88 12-68 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.00086 2.9E-08 46.4 5.5 36 27-63 32-67 (130)
165 2lz0_A Uncharacterized protein 65.8 6.1 0.00021 25.4 3.3 42 41-83 10-51 (100)
166 2lz0_A Uncharacterized protein 61.4 16 0.00056 23.3 4.8 48 12-61 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.5e-31 Score=238.86 Aligned_cols=239 Identities=33% Similarity=0.488 Sum_probs=168.2
Q ss_pred CCcEEEccCCccccccCccccC--CCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 3 SLKVLDASSNQLTGNISPNLCE--LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+|++|++++|.+++..+..+.. ++.|++|++++|.+++.+|..+.. +++|++|++++|.+++..|..++.+++|++|
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 4555666666555555555544 556677777777776666666655 6777777777777776777777777777777
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 146 (247)
++++|.+.+.+|..+. .+++|+.+++++|. ++.|++++|++++.+|.+++.+++|++|++++|.+
T Consensus 448 ~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp ECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc
Confidence 7777777766666554 37777777777773 34677777777777777777778888888888888
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcCCCCCCCC-----------------------------------------------
Q 044683 147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR----------------------------------------------- 179 (247)
Q Consensus 147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~----------------------------------------------- 179 (247)
++.+|..++.+++|+.|++++|.+++.+|..+.
T Consensus 527 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (768)
T 3rgz_A 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGG
T ss_pred cCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhc
Confidence 777777777788888888888777765553221
Q ss_pred --------------------------CCCeEeccCCcccccCCCcc-------eeee--------ecchhcC--CCceEe
Q 044683 180 --------------------------TSSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLFRR--RPRRLA 216 (247)
Q Consensus 180 --------------------------~~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~~~--~L~~L~ 216 (247)
....|++++|+++|.+|..+ .|++ +|..+.. +|+.||
T Consensus 607 l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp GGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 11267777777777777655 3333 7777777 888888
Q ss_pred ccCCeeeecCCccccCCCchhhhhccc
Q 044683 217 VEGFDLVLELPQIVCGLPTCFALGKLF 243 (247)
Q Consensus 217 l~~n~l~~~~~~~~~~l~~L~~l~~~~ 243 (247)
+++|+++|.+|+.++++++|+.++--+
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcC
Confidence 888888888888888888887776543
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.9e-31 Score=214.96 Aligned_cols=227 Identities=26% Similarity=0.299 Sum_probs=191.3
Q ss_pred CCCcEEEccCCcccc--ccCccccCCCCCcEEEccC-CceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCC
Q 044683 2 TSLKVLDASSNQLTG--NISPNLCELVLLRELYIDN-NDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLK 78 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 78 (247)
.+++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 368899999999998 8899999999999999995 9998888888876 89999999999999888899999999999
Q ss_pred EEeccCCcccccCchhHhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcC
Q 044683 79 SLDISHNQLTGEIPERMATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPN 143 (247)
Q Consensus 79 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 143 (247)
+|++++|.+.+.+|..+. .+++|+.|++++|. ++.+++++|.+++.+|..+..++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 999999999877777665 49999999998884 34788888888888888888887 99999999
Q ss_pred CcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC--CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccC
Q 044683 144 NNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR--TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEG 219 (247)
Q Consensus 144 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~ 219 (247)
|.+++..+..+..+++|++|++++|.+++.++.... ....|++++|.+++.+|. ++.. +|++|++++
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~---------~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ---------GLTQLKFLHSLNVSF 277 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG---------GGGGCTTCCEEECCS
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh---------HHhcCcCCCEEECcC
Confidence 999888888888899999999999999866665222 334899999998877554 4455 899999999
Q ss_pred CeeeecCCccccCCCchhhhhc
Q 044683 220 FDLVLELPQIVCGLPTCFALGK 241 (247)
Q Consensus 220 n~l~~~~~~~~~~l~~L~~l~~ 241 (247)
|++++.+|.. +++++|+.+.-
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGT
T ss_pred CcccccCCCC-ccccccChHHh
Confidence 9999998876 77777776653
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=5e-30 Score=231.38 Aligned_cols=145 Identities=36% Similarity=0.519 Sum_probs=74.6
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+|++|++++|.+++..|..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 4555566666555555555555555555555555555555544443 455555555555555555555555555555555
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
++|.+++.+|..+. .+++|+.+++++|. ++.|++++|.+++.+|..+..+++|++|++++|.+++
T Consensus 474 ~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 474 DFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 55555544444332 24555555555542 2244455555544444444444444444444444443
Q ss_pred c
Q 044683 149 P 149 (247)
Q Consensus 149 ~ 149 (247)
.
T Consensus 553 ~ 553 (768)
T 3rgz_A 553 T 553 (768)
T ss_dssp B
T ss_pred c
Confidence 3
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=3.9e-29 Score=203.20 Aligned_cols=214 Identities=25% Similarity=0.331 Sum_probs=188.3
Q ss_pred CCCCcEEEccC-CccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683 1 MTSLKVLDASS-NQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS 79 (247)
Q Consensus 1 l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 79 (247)
+++|++|++++ |.+.+..|..+..+++|++|++++|.+++.+|..+.. +++|++|++++|.+++..|..+..+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ-IKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC-CCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 46899999995 9999999999999999999999999999889988876 899999999999999889999999999999
Q ss_pred EeccCCcccccCchhHhhcCC-CccEEEccCCC-------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683 80 LDISHNQLTGEIPERMATGCF-SLEILALSNNS-------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN 145 (247)
Q Consensus 80 L~l~~n~~~~~~~~~~~~~~~-~L~~l~l~~n~-------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 145 (247)
|++++|.+++.+|..+.. ++ +|+.+++++|. ++.+++++|.+++..+..+..+++|++|++++|.
T Consensus 154 L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 999999998888888765 66 99999999984 4589999999999999999999999999999999
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCe-
Q 044683 146 LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFD- 221 (247)
Q Consensus 146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~- 221 (247)
+++.++. +..+++|++|++++|.+++..|..+.. ...|++++|+++|.+|... .+. +|+.+++++|.
T Consensus 233 l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~-------~l~-~L~~l~l~~N~~ 303 (313)
T 1ogq_A 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-------NLQ-RFDVSAYANNKC 303 (313)
T ss_dssp ECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST-------TGG-GSCGGGTCSSSE
T ss_pred eeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc-------ccc-ccChHHhcCCCC
Confidence 9966555 788999999999999999888887753 3399999999999877531 111 89999999996
Q ss_pred eeec
Q 044683 222 LVLE 225 (247)
Q Consensus 222 l~~~ 225 (247)
+.|.
T Consensus 304 lc~~ 307 (313)
T 1ogq_A 304 LCGS 307 (313)
T ss_dssp EEST
T ss_pred ccCC
Confidence 6653
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=5.4e-29 Score=211.96 Aligned_cols=238 Identities=17% Similarity=0.126 Sum_probs=121.7
Q ss_pred CCCcEEEccCCcccccc-CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHh--hhcCCCCC
Q 044683 2 TSLKVLDASSNQLTGNI-SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSS--FFDMKMLK 78 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~ 78 (247)
++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..+.. +..+++|+
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 45566666666554332 344555666666666666655333444433 555666666655555433333 55555555
Q ss_pred EEeccCCcccccCchhHhhcCCCccEEEccCCC-----------------------------------------------
Q 044683 79 SLDISHNQLTGEIPERMATGCFSLEILALSNNS----------------------------------------------- 111 (247)
Q Consensus 79 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~----------------------------------------------- 111 (247)
+|++++|.+.+..|..++..+++|+.+++++|.
T Consensus 133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 555555555533344333345555555555442
Q ss_pred -ccEEEccCCcCCCCCchhhhc---------------------------------------ccCcCeeeCcCCcccccCc
Q 044683 112 -LQGLYLSDNRLFGRIPRWLGN---------------------------------------LLALEDIMMPNNNLQGPIP 151 (247)
Q Consensus 112 -l~~l~l~~n~~~~~~~~~~~~---------------------------------------~~~L~~L~l~~n~~~~~~~ 151 (247)
++.|++++|.+++..+..+.. .++|+++++++|.+++..+
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 233444444443322222211 1344555555555554444
Q ss_pred hhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-------eeee--------ecchhcC--C
Q 044683 152 IEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLFRR--R 211 (247)
Q Consensus 152 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~~~--~ 211 (247)
..+..+++|++|++++|.+++..+..+.. ...|++++|.+++..+..+ .|++ .|.++.. +
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 55555555555555555555444444432 1155555555544333222 1222 2444555 7
Q ss_pred CceEeccCCeeeecCCccccCCCchhhhh
Q 044683 212 PRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 212 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
|++|++++|++++..+..+..+++|+.+.
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIW 401 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEE
Confidence 88888888888876666677777777665
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.3e-28 Score=201.38 Aligned_cols=213 Identities=23% Similarity=0.315 Sum_probs=182.0
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
+.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.++ .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 56899999999999 77888999999999999999999 99988876 899999999999999 7899999999999999
Q ss_pred ccCCcccccCchhHh--------hcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchh
Q 044683 82 ISHNQLTGEIPERMA--------TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIE 153 (247)
Q Consensus 82 l~~n~~~~~~~~~~~--------~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 153 (247)
+++|.+.+.+|..+. ..+++|+.|++++ |.++ .+|..+..+++|++|++++|.++ .+|..
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~----------n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~ 224 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW----------TGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA 224 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE----------ECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGG
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcC----------CCcC-cchHhhcCCCCCCEEEccCCCCC-cCchh
Confidence 999877768887543 2356666555555 4444 56888999999999999999999 46677
Q ss_pred hhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCc
Q 044683 154 FCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQ 228 (247)
Q Consensus 154 l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~ 228 (247)
+..+++|++|++++|.+.+.+|..+... ..|++++|.+.+.+|.. +.. +|+.|++++|.+.+.+|+
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~---------~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD---------IHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT---------GGGCTTCCEEECTTCTTCCCCCG
T ss_pred hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh---------hhcCCCCCEEeCCCCCchhhccH
Confidence 9999999999999999998988877533 39999999998876654 444 899999999999999999
Q ss_pred cccCCCchhhh
Q 044683 229 IVCGLPTCFAL 239 (247)
Q Consensus 229 ~~~~l~~L~~l 239 (247)
.++++++++.+
T Consensus 296 ~l~~L~~L~~l 306 (328)
T 4fcg_A 296 LIAQLPANCII 306 (328)
T ss_dssp GGGGSCTTCEE
T ss_pred HHhhccCceEE
Confidence 99999988766
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.3e-28 Score=207.13 Aligned_cols=240 Identities=20% Similarity=0.187 Sum_probs=197.0
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++..+..|.++++|++|++++|.+.+.++...+..+++|++|++++|.++...|..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 46899999999999888999999999999999999987677666666699999999999999988899999999999999
Q ss_pred ccCCcccccCchh-HhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcc------------
Q 044683 82 ISHNQLTGEIPER-MATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNL------------ 133 (247)
Q Consensus 82 l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~------------ 133 (247)
+++|.+++.++.. .+..+++|+.|++++|. ++.+++++|.+.+..+..+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998544432 35568999999999984 4489999999988777665543
Q ss_pred ----------------------cCcCeeeCcCCcccccCchhhhC-----------------------------------
Q 044683 134 ----------------------LALEDIMMPNNNLQGPIPIEFCQ----------------------------------- 156 (247)
Q Consensus 134 ----------------------~~L~~L~l~~n~~~~~~~~~l~~----------------------------------- 156 (247)
++|++|++++|.+++..+..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 67999999999887655544322
Q ss_pred ----CCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-------eeee--------ecchhcC--CC
Q 044683 157 ----LELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLFRR--RP 212 (247)
Q Consensus 157 ----~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~~~--~L 212 (247)
.++|+.|++++|.+++..|..+.. ...|++++|.+++..+..+ .|++ .|.++.. +|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 268999999999999888877753 3399999999998776554 3444 4566666 89
Q ss_pred ceEeccCCeeeecCCccccCCCchhhhhc
Q 044683 213 RRLAVEGFDLVLELPQIVCGLPTCFALGK 241 (247)
Q Consensus 213 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~~ 241 (247)
++|++++|++++..|..++++++|+.|+-
T Consensus 350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 378 (455)
T 3v47_A 350 EVLDLSYNHIRALGDQSFLGLPNLKELAL 378 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECCCCcccccChhhccccccccEEEC
Confidence 99999999999888888998888887754
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=7.1e-28 Score=206.36 Aligned_cols=164 Identities=22% Similarity=0.261 Sum_probs=99.9
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
.++.|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++...+..|..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC-CccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 4667777777777666667777777777777777776444444443 667777777777776444445666777777777
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
++|.+. .++...+..+++|+.|++++|. ++.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 112 s~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 777766 3333334456667777766663 3356666666665555556666666666666665554
Q ss_pred cCchhhhCCCCCCEEEccCC
Q 044683 149 PIPIEFCQLELLTILDLSNN 168 (247)
Q Consensus 149 ~~~~~l~~~~~L~~L~l~~n 168 (247)
..+..+..+++|+.|++++|
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECC
T ss_pred eChhhcccCcccceeeCCCC
Confidence 44444444444444444443
No 9
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=2.2e-26 Score=188.20 Aligned_cols=230 Identities=17% Similarity=0.207 Sum_probs=158.0
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..++ ++|++|++++|.++...+..+..+++|++|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 76 KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 45666666666666555566666666666666666665 5555443 4566666666666655566677778888888
Q ss_pred ccCCcccc-cCchhHhhcCCCccEEEccCCC-----------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc
Q 044683 82 ISHNQLTG-EIPERMATGCFSLEILALSNNS-----------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP 149 (247)
Q Consensus 82 l~~n~~~~-~~~~~~~~~~~~L~~l~l~~n~-----------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 149 (247)
+++|.+.. .+....+..+++|+.+++++|. ++.+++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 88877752 1233344557888888888773 45788888888877778888888899999999988877
Q ss_pred CchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchh--cC-CCceEeccCCeee
Q 044683 150 IPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLF--RR-RPRRLAVEGFDLV 223 (247)
Q Consensus 150 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~--~~-~L~~L~l~~n~l~ 223 (247)
.+..+..+++|++|++++|.++ .+|..+.. ...|++++|++++..+..+ -+... .. .++.+++++|.+.
T Consensus 232 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f----~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF----CPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS----SCSSCCTTSCCCSEEECCSSSSC
T ss_pred ChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc----CCcccccccccccceEeecCccc
Confidence 6677888889999999999888 55555542 3388999998886554433 01000 11 6888999999876
Q ss_pred e--cCCccccCCCchhhhh
Q 044683 224 L--ELPQIVCGLPTCFALG 240 (247)
Q Consensus 224 ~--~~~~~~~~l~~L~~l~ 240 (247)
. ..|..|..++.++.+.
T Consensus 307 ~~~i~~~~f~~~~~l~~l~ 325 (330)
T 1xku_A 307 YWEIQPSTFRCVYVRAAVQ 325 (330)
T ss_dssp GGGSCGGGGTTCCCGGGEE
T ss_pred ccccCccccccccceeEEE
Confidence 3 4566777777777664
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=5.6e-27 Score=200.81 Aligned_cols=238 Identities=22% Similarity=0.178 Sum_probs=184.1
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|...+..+++|++|++++|.++...+..|..+++|++|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 467899999999999888889999999999999999998 7777766668899999999999987778888899999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 146 (247)
++++|.+. .++...+..+++|+.|++++|. ++.|++++|.+.+..+..+..+++|++|++++|..
T Consensus 134 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 99999988 5554455668899999998884 44788999998877777888899999999999887
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcc-------eeee--------ecchh
Q 044683 147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSL-------GLDI--------LPHLF 208 (247)
Q Consensus 147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~~~ 208 (247)
.+.++.......+|+.|++++|.+++..+..+. ....|++++|.+++..+..+ .|++ .|.+|
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 767776666677899999999999854434443 34488999998886655433 2222 34455
Q ss_pred cC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 209 RR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 209 ~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
.. +|++|++++|++++..+..|..+++|+.+.
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 54 677777777777765555666666666553
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1e-27 Score=212.14 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=109.0
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCc-eee-cCCchhhhh-----cccccEEEccCCccccCChH--hh
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNND-LRG-HIPVEIGTY-----LLVFIHLNLSRNAFNGSIPS--SF 71 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~--~~ 71 (247)
+++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.. +++|++|++++|.++ .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 4679999999999999999999999999999999998 887 788888761 288999999999998 7787 88
Q ss_pred hcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCC-------------C-ccEEEccCCcCCCCCchhhhccc--C
Q 044683 72 FDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------------S-LQGLYLSDNRLFGRIPRWLGNLL--A 135 (247)
Q Consensus 72 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n-------------~-l~~l~l~~n~~~~~~~~~~~~~~--~ 135 (247)
+.+++|++|++++|.++|.+| . +..+++|+.|++++| . ++.|++++|.++ .+|..+...+ +
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSV 403 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSC
T ss_pred ccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCc
Confidence 999999999999998887777 3 334566666666665 2 455555555555 4444443322 4
Q ss_pred cCeeeCcCCcccccCchhhh
Q 044683 136 LEDIMMPNNNLQGPIPIEFC 155 (247)
Q Consensus 136 L~~L~l~~n~~~~~~~~~l~ 155 (247)
|++|++++|.+++..|..+.
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSC
T ss_pred cCEEECcCCcCCCcchhhhc
Confidence 44444444444444443333
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=7.7e-27 Score=205.42 Aligned_cols=234 Identities=21% Similarity=0.146 Sum_probs=185.9
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+|+.+++++|.+++..+..|..+++|++|++++|.++ .+|..+.. +++|++|++++|.++...|..+..+++|++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 5788999999999888888999999999999999998 88888765 889999999999998777888899999999999
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCC----------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNS----------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~----------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 146 (247)
++|.+.+.++...+..+++|+.+++++|. ++.+++++|.+.+..+..+..+++|++|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 99988777777766678999999998874 34678888888877788888889999999999988
Q ss_pred cccCc-hhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCccccc-CC--Ccc-------eeee--------e
Q 044683 147 QGPIP-IEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGK-PC--GSL-------GLDI--------L 204 (247)
Q Consensus 147 ~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~-~~--~~~-------~l~l--------~ 204 (247)
++..+ ..+..+++|++|++++|.+++..+..+.. ...|++++|.+++. ++ ..+ .+++ .
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 86654 34778889999999999988777776643 33889999988762 11 111 2332 3
Q ss_pred cchhcC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683 205 PHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL 239 (247)
Q Consensus 205 p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 239 (247)
|.++.. +|++|++++|++++..|..+++++.| .+
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 555555 77777777777777777777777766 44
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=2.5e-26 Score=192.00 Aligned_cols=222 Identities=21% Similarity=0.229 Sum_probs=122.3
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++..+..|..+++|++|++++|.++ .+++..+..+++|++|++++|.++...+..|..+++|++|+
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 44555555555555444445555555555555555555 33333222355555555555555532222344555555555
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCC--------------------------------------------------
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNS-------------------------------------------------- 111 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-------------------------------------------------- 111 (247)
+++|.+. .++...+..+++|+.|++++|.
T Consensus 148 L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 226 (390)
T 3o6n_A 148 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 226 (390)
T ss_dssp CCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCS
T ss_pred CCCCccC-ccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccc
Confidence 5555554 3333333334555555555442
Q ss_pred -ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCC--CCCCCeEeccC
Q 044683 112 -LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSC--FRTSSFVKKQD 188 (247)
Q Consensus 112 -l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~L~l~~ 188 (247)
++.+++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..... +.....|++++
T Consensus 227 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 227 ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCS
T ss_pred cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCC
Confidence 23344444444432 34566677777777777777666667777777777777777776432221 12333777777
Q ss_pred CcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 189 RRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 189 n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
|++++ +|.++.. +|++|++++|++++.. +..+++|+.++
T Consensus 305 n~l~~----------~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~ 345 (390)
T 3o6n_A 305 NHLLH----------VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLT 345 (390)
T ss_dssp SCCCC----------CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEE
T ss_pred Cccee----------cCccccccCcCCEEECCCCccceeC---chhhccCCEEE
Confidence 77664 3333444 8888888888887543 45555555543
No 14
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1.6e-26 Score=189.28 Aligned_cols=227 Identities=18% Similarity=0.186 Sum_probs=137.1
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+++.|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|..+. ++|++|++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYISKNHLV-EIPPNLP--SSLVELRI 130 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence 5677777777777665666777777777777777776444444443 667777777777766 3444332 56666666
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCc------------------------------------cEEEccCCcCCCCC
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSL------------------------------------QGLYLSDNRLFGRI 126 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l------------------------------------~~l~l~~n~~~~~~ 126 (247)
++|.+. .++...+..+++|+.+++++|.+ +.+++++|.+++..
T Consensus 131 ~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 131 HDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE 209 (332)
T ss_dssp CSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred CCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence 666666 55555555566666666666533 24555555555555
Q ss_pred chhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcceeee
Q 044683 127 PRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDI 203 (247)
Q Consensus 127 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l 203 (247)
+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+. ....|++++|++++..+..+
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~---- 284 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDF---- 284 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSS----
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHc----
Confidence 556666666777777777666555556666677777777777666 4444443 22266777776665433322
Q ss_pred ecchhc--C-CCceEeccCCeee--ecCCccccCCCchhhh
Q 044683 204 LPHLFR--R-RPRRLAVEGFDLV--LELPQIVCGLPTCFAL 239 (247)
Q Consensus 204 ~p~~~~--~-~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l 239 (247)
-+..+. . .++.|++++|.+. +..|..|..+++|+.+
T Consensus 285 ~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp SCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred cccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 000000 1 5677777777765 4456666666666655
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=6e-27 Score=206.07 Aligned_cols=227 Identities=19% Similarity=0.253 Sum_probs=118.4
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChH-hhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPS-SFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L 80 (247)
++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+.. +++|++|++++|.+.+.++. .+..+++|++|
T Consensus 278 ~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred cCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 45666666666666 45555666666666666666665332333322 55555555555554432222 24445555555
Q ss_pred eccCCcccc-------------------------cCchhHhhcCCCccEEEccCCC---------------ccEEEccCC
Q 044683 81 DISHNQLTG-------------------------EIPERMATGCFSLEILALSNNS---------------LQGLYLSDN 120 (247)
Q Consensus 81 ~l~~n~~~~-------------------------~~~~~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n 120 (247)
++++|.+.+ .++...+..+++|+.+++++|. ++.+++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 555555441 2222222234444444444441 224455555
Q ss_pred cCCCCCchhhhcccCcCeeeCcCCccccc---CchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCccccc
Q 044683 121 RLFGRIPRWLGNLLALEDIMMPNNNLQGP---IPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGK 194 (247)
Q Consensus 121 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~ 194 (247)
.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+... ..|++++|++++.
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 55444444455555555555555555431 11334455555555555555554444444321 1555555555543
Q ss_pred CCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 195 PCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 195 ~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
.|.++.. .| .|++++|++++..|..++.+++|+.++
T Consensus 516 ---------~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~ 553 (606)
T 3t6q_A 516 ---------SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN 553 (606)
T ss_dssp ---------GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred ---------ChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence 3445555 67 888888888887777777776666554
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=3.5e-26 Score=201.03 Aligned_cols=222 Identities=21% Similarity=0.229 Sum_probs=133.4
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++..+..|..+++|++|++++|.++ .+++..+..+++|++|++++|.++...+..|..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 45666666666666555556666666666666666666 34433333366666666666666643333445666666666
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCC--------------------------------------------------
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNS-------------------------------------------------- 111 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-------------------------------------------------- 111 (247)
+++|.+. .++...+..+++|+.|++++|.
T Consensus 154 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 154 MSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp CCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred eeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 6666665 3333333345556666555553
Q ss_pred -ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCC--CCCCCeEeccC
Q 044683 112 -LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSC--FRTSSFVKKQD 188 (247)
Q Consensus 112 -l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~L~l~~ 188 (247)
++.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..... +.....|++++
T Consensus 233 ~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 233 ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCS
T ss_pred CCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCC
Confidence 2344555555543 345667777777777777777766777777777777777777777532222 22333777777
Q ss_pred CcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 189 RRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 189 n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
|.+++ +|.++.. +|+.|++++|.+++.. +..+++|+.+.
T Consensus 311 N~l~~----------i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~ 351 (597)
T 3oja_B 311 NHLLH----------VERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLT 351 (597)
T ss_dssp SCCCC----------CGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEE
T ss_pred CCCCc----------cCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEE
Confidence 77764 3444444 8888888888887643 44445554443
No 17
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.1e-27 Score=196.00 Aligned_cols=232 Identities=18% Similarity=0.133 Sum_probs=161.4
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. +++|++|++++|.++...+..++.+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 46899999999999777778999999999999999998544444544 88999999999999866556688999999999
Q ss_pred ccCCcccccCch-hHhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683 82 ISHNQLTGEIPE-RMATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN 145 (247)
Q Consensus 82 l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 145 (247)
+++|.++ .+|. ..+..+++|+.+++++|. ++.+++++|.+++..|..+..+++|++|++++|.
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 9999998 7776 556668899999888772 2356666666666556666666666666666666
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC------CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEec
Q 044683 146 LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR------TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAV 217 (247)
Q Consensus 146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~------~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l 217 (247)
++......+..+++|++|++++|.+++..+..+. ....++++++.+++.. +.-+|.++.. +|++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~-----l~~l~~~l~~l~~L~~L~L 284 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-----LFQVMKLLNQISGLLELEF 284 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH-----HHHHHHHHHTCTTCCEEEC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc-----hhhhHHHHhcccCCCEEEC
Confidence 6533223333466666666666666654333221 1224555555554321 1115666666 8999999
Q ss_pred cCCeeeecCCccccCCCchhhhh
Q 044683 218 EGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 218 ~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
++|++++..+..|+++++|+.+.
T Consensus 285 s~N~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 285 SRNQLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCCccCHHHHhcCCCCCEEE
Confidence 99999854333468888887764
No 18
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=6e-26 Score=185.64 Aligned_cols=214 Identities=19% Similarity=0.244 Sum_probs=156.8
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
+.+++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSKNQLK-ELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCS-BCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEECCCCcCC-ccChhhc--ccccEEE
Confidence 35778888888888766667888888888888888887444555554 788888888888877 4554432 6788888
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCc----------------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSL----------------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN 145 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l----------------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 145 (247)
+++|.+. .++...+..+++|+.+++++|.+ +.+++++|.++. +|..+. ++|++|++++|.
T Consensus 128 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 128 VHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp CCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSC
T ss_pred CCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCc
Confidence 8888887 66666666788888888887743 467777777763 444332 678888888888
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCC
Q 044683 146 LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGF 220 (247)
Q Consensus 146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n 220 (247)
+++..+..+..+++|++|++++|.+++..+..+. ....|++++|.++. +|.++.. +|++|++++|
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK----------VPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS----------CCTTTTTCSSCCEEECCSS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc----------CChhhccCCCcCEEECCCC
Confidence 8876677788888888888888888766665554 23388888888773 4444555 8999999999
Q ss_pred eeeecCCccccCC
Q 044683 221 DLVLELPQIVCGL 233 (247)
Q Consensus 221 ~l~~~~~~~~~~l 233 (247)
++++..+..|+..
T Consensus 274 ~i~~~~~~~f~~~ 286 (330)
T 1xku_A 274 NISAIGSNDFCPP 286 (330)
T ss_dssp CCCCCCTTSSSCS
T ss_pred cCCccChhhcCCc
Confidence 9998777777644
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=8.1e-27 Score=206.34 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=159.2
Q ss_pred CCCCcEEEccCCccccc-----------------cCcccc--CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC
Q 044683 1 MTSLKVLDASSNQLTGN-----------------ISPNLC--ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n 61 (247)
+++|++|++++|.+++. +|..+. ++++|++|++++|.+.+.+|..+.. +++|++|++++|
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n 283 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACN 283 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCC
Confidence 56899999999999985 899988 9999999999999999899988876 999999999999
Q ss_pred c-ccc-CChHhhhcC------CCCCEEeccCCcccccCch-hHhhcCCCccEEEccCCCcc-------------EEEccC
Q 044683 62 A-FNG-SIPSSFFDM------KMLKSLDISHNQLTGEIPE-RMATGCFSLEILALSNNSLQ-------------GLYLSD 119 (247)
Q Consensus 62 ~-l~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~-------------~l~l~~ 119 (247)
. +++ .+|..++.+ ++|++|++++|.++ .+|. ..+..+++|+.|++++|.++ .|++++
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCC
Confidence 8 887 789988876 99999999999999 8997 23446999999999999544 789999
Q ss_pred CcCCCCCchhhhcccC-cCeeeCcCCcccccCchhhhCCC--CCCEEEccCCcCcCCCCCCCC----------CCCeEec
Q 044683 120 NRLFGRIPRWLGNLLA-LEDIMMPNNNLQGPIPIEFCQLE--LLTILDLSNNTIFGTLPSCFR----------TSSFVKK 186 (247)
Q Consensus 120 n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~----------~~~~L~l 186 (247)
|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++..|..+. ....|++
T Consensus 363 N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred Cccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 9998 78888999999 999999999999 7787776654 889999999998877665554 1125566
Q ss_pred cCCccc
Q 044683 187 QDRRTV 192 (247)
Q Consensus 187 ~~n~~~ 192 (247)
++|.++
T Consensus 441 s~N~l~ 446 (636)
T 4eco_A 441 SNNQIS 446 (636)
T ss_dssp CSSCCC
T ss_pred cCCccC
Confidence 666555
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=3.8e-26 Score=201.43 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=49.0
Q ss_pred chhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeec
Q 044683 151 PIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLE 225 (247)
Q Consensus 151 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~ 225 (247)
|..+..+++|++|++++|++++..|..|... ..|++++|++++..+ ..|.. +|++|++++|++++.
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~---------~~~~~l~~L~~L~Ls~N~l~~~ 557 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT---------FPYKCLNSLQVLDYSLNHIMTS 557 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC---------GGGTTCTTCCEEECTTSCCCBC
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh---------hHHhCCCCCCEEECCCCcCCCC
Confidence 3444555555555555555555555444322 255555555554332 33444 888899999998888
Q ss_pred CCccccCC-Cchhhhh
Q 044683 226 LPQIVCGL-PTCFALG 240 (247)
Q Consensus 226 ~~~~~~~l-~~L~~l~ 240 (247)
.|+.+..+ ++|+.++
T Consensus 558 ~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 558 KKQELQHFPSSLAFLN 573 (635)
T ss_dssp CSSCTTCCCTTCCEEE
T ss_pred CHHHHHhhhCcCCEEE
Confidence 88888777 4666654
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=4.5e-26 Score=193.39 Aligned_cols=209 Identities=22% Similarity=0.186 Sum_probs=142.8
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++++.|++++|.++...+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 35788999999999888888999999999999999998 55555555588999999999999866666788899999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCC---------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNN---------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n---------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 146 (247)
+++|.+. .++...+..+++|+.|++++| +++.|++++|.++. +| .+..+++|++|++++|.+
T Consensus 143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCC
T ss_pred CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCcc
Confidence 9999988 777777777889998888874 34455555555552 23 245555566666666666
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCe
Q 044683 147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFD 221 (247)
Q Consensus 147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~ 221 (247)
++..+..+..+++|+.|++++|.+++..+..|... ..|++++|++++..+.. +.. +|+.|++++|.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDL---------FTPLHHLERIHLHHNP 290 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTT---------TSSCTTCCEEECCSSC
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhH---------hccccCCCEEEcCCCC
Confidence 55555555566666666666666655555444322 25666666655432221 222 56666666665
Q ss_pred ee
Q 044683 222 LV 223 (247)
Q Consensus 222 l~ 223 (247)
+.
T Consensus 291 ~~ 292 (440)
T 3zyj_A 291 WN 292 (440)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=7.3e-26 Score=192.71 Aligned_cols=210 Identities=20% Similarity=0.147 Sum_probs=169.1
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
+++++|++++|.+++..+..|..+++|++|++++|.+++ ++...+..+++|++|++++|.++...+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 468999999999998889999999999999999999984 4444444599999999999999977677788999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCC---------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcc
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNN---------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNL 146 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n---------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 146 (247)
+++|.+. .++...+..+++|+.|++++| +++.|++++|++++. | .+..+++|++|++++|.+
T Consensus 154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence 9999998 788777778999999999874 456788888888753 3 467778888888888888
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCe
Q 044683 147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFD 221 (247)
Q Consensus 147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~ 221 (247)
++..+..+..+++|+.|++++|.+++..+..|... ..|++++|++++..+.. +.. +|+.|++++|.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL---------FTPLRYLVELHLHHNP 301 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTS---------STTCTTCCEEECCSSC
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHH---------hccccCCCEEEccCCC
Confidence 87777888888888888888888887777666532 38888888887644332 233 78888888887
Q ss_pred eee
Q 044683 222 LVL 224 (247)
Q Consensus 222 l~~ 224 (247)
+..
T Consensus 302 ~~C 304 (452)
T 3zyi_A 302 WNC 304 (452)
T ss_dssp EEC
T ss_pred cCC
Confidence 653
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=6.6e-26 Score=201.97 Aligned_cols=236 Identities=24% Similarity=0.222 Sum_probs=124.8
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
++++|++++|.+++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|.++...+.+|+.+++|++|++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ-KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH-HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh-cccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 355555555555544444455555555555555555522232222 2555555555555555333334555555555555
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCC--------------ccE--------------------------EEccCCcC
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNS--------------LQG--------------------------LYLSDNRL 122 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~--------------------------l~l~~n~~ 122 (247)
++|.+. .++...+..+++|++|++++|. ++. +++++|.+
T Consensus 105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 555554 3333333334455555554441 224 44444444
Q ss_pred CCCCchhhhcc---------------------------cCcCeeeCcCCcccccCchhhhCCC--CCCEEEccCCcCcCC
Q 044683 123 FGRIPRWLGNL---------------------------LALEDIMMPNNNLQGPIPIEFCQLE--LLTILDLSNNTIFGT 173 (247)
Q Consensus 123 ~~~~~~~~~~~---------------------------~~L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~ 173 (247)
++..+..+..+ ++|+.|++++|.+++..+..+..++ +|++|++++|.+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 43333333221 2334444444444444444444443 377777777777665
Q ss_pred CCCCCCC---CCeEeccCCcccccCCCcc-------eeee-------------ecc----hhcC--CCceEeccCCeeee
Q 044683 174 LPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI-------------LPH----LFRR--RPRRLAVEGFDLVL 224 (247)
Q Consensus 174 ~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l-------------~p~----~~~~--~L~~L~l~~n~l~~ 224 (247)
.+..+.. ...|++++|.+++..|..+ .+++ +|. ++.. +|++|++++|++++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 5555542 2277777777766555433 2221 222 4444 89999999999998
Q ss_pred cCCccccCCCchhhhh
Q 044683 225 ELPQIVCGLPTCFALG 240 (247)
Q Consensus 225 ~~~~~~~~l~~L~~l~ 240 (247)
..+..|.++++|+.+.
T Consensus 344 ~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLS 359 (680)
T ss_dssp CCTTTTTTCTTCCEEE
T ss_pred CChhHhccccCCcEEE
Confidence 8888888888887765
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.9e-26 Score=185.55 Aligned_cols=191 Identities=20% Similarity=0.232 Sum_probs=112.7
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceee--cCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRG--HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS 79 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 79 (247)
+++++|++++|.++...+..|..+++|++|++++|.++. ..+..+.. +++|++|++++|.++ .+|..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 357788888888875444556778888888888887762 22444444 678888888888877 45666777888888
Q ss_pred EeccCCcccccCch-hHhhcCCCccEEEccCCCc--------------cEEEccCCcCCC-CCchhhhcccCcCeeeCcC
Q 044683 80 LDISHNQLTGEIPE-RMATGCFSLEILALSNNSL--------------QGLYLSDNRLFG-RIPRWLGNLLALEDIMMPN 143 (247)
Q Consensus 80 L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l--------------~~l~l~~n~~~~-~~~~~~~~~~~L~~L~l~~ 143 (247)
|++++|.++ .++. ..+..+++|+.+++++|.+ +.|++++|.+.+ ..|..+..+++|++|++++
T Consensus 106 L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 888888877 4443 3445577777777766633 244444444443 2344444445555555555
Q ss_pred CcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccC
Q 044683 144 NNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKP 195 (247)
Q Consensus 144 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~ 195 (247)
|.+++..+..+..+++|++|++++|.+++..+..+. ....|++++|++++..
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence 555444444444455555555555555433333332 1124555555554443
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7.5e-26 Score=184.94 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=171.1
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhc-------
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFD------- 73 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------- 73 (247)
+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.+.+.+|..+..
T Consensus 103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~-l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGG-CTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhc-CcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 468999999999999 88999999999999999999999 99988876 899999999998887788877654
Q ss_pred --CCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc
Q 044683 74 --MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP 151 (247)
Q Consensus 74 --l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 151 (247)
+++|++|++++|.++ .+|..+. .+++|+.|++++|.++ .+|..+..+++|++|++++|.+.+.+|
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-----------~l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-----------ALGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-----------CCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred ccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-----------cCchhhccCCCCCEEECcCCcchhhhH
Confidence 999999999999998 8988755 4888887777776654 356678999999999999999998999
Q ss_pred hhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683 152 IEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL 224 (247)
Q Consensus 152 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~ 224 (247)
..+..+++|++|++++|.+.+.+|..+.. ...|++++|.+.+.+|. ++.. +++.+++..+.+..
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~---------~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS---------LIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG---------GGGGSCTTCEEECCGGGSCC
T ss_pred HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH---------HHhhccCceEEeCCHHHHHH
Confidence 99999999999999999999899987753 33999999999988655 4455 88899888776553
No 26
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.6e-25 Score=177.38 Aligned_cols=202 Identities=19% Similarity=0.195 Sum_probs=124.0
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCc-cccCChHhhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA-FNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 80 (247)
+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+.. +++|++|++++|. ++...+..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC-ccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 35667777777776655566667777777777777776433444433 6677777777775 554446666667777777
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 160 (247)
++++|.++ .++...+..+++|+.+++++|.+ ++..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 111 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 111 HLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL----------QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp ECTTSCCC-CCCTTTTTTCTTCCEEECCSSCC----------CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred ECCCCcCC-EECHhHhhCCcCCCEEECCCCcc----------cccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 77777766 44433444466666555555433 33334456666777777777777765545556667777
Q ss_pred CEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683 161 TILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL 224 (247)
Q Consensus 161 ~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~ 224 (247)
++|++++|.+++..|..+... ..|++++|.+++..+ .++.. +|++|++++|.+.+
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT---------EALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH---------HHHTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH---------HHcccCcccCEEeccCCCccC
Confidence 777777777766656555422 267777777665322 22333 67777777776653
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=6.6e-26 Score=189.46 Aligned_cols=224 Identities=20% Similarity=0.174 Sum_probs=158.1
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++++.+++++|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.++...|..++.+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57899999999999666666788999999999999998 55544444599999999999999987788899999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcc--------------
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNL-------------- 133 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~-------------- 133 (247)
+++|.++ .+|..++..+++|+.|++++|. ++.|++++|.+++.....+..+
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~ 202 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 202 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence 9999998 8898887779999999999884 4488888888875432222111
Q ss_pred -----------------------cCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEecc
Q 044683 134 -----------------------LALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQ 187 (247)
Q Consensus 134 -----------------------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~ 187 (247)
++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+.. ...|+++
T Consensus 203 ~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 203 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred CCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 1233334444444321 34455566666666666665554544432 2256666
Q ss_pred CCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 188 DRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 188 ~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
+|++++ +|..+.. +|++|++++|++++ +|..+..+++|+.|.
T Consensus 281 ~n~l~~----------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 281 NNRLVA----------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 324 (390)
T ss_dssp SSCCCE----------EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEE
T ss_pred CCcCcc----------cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEE
Confidence 666554 2332333 78888888888874 566666666666554
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.4e-25 Score=194.14 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=84.8
Q ss_pred cEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc--cCchhhhCCCCCCEEEccCCcCcCCCCC-CCC---CCCeEec
Q 044683 113 QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG--PIPIEFCQLELLTILDLSNNTIFGTLPS-CFR---TSSFVKK 186 (247)
Q Consensus 113 ~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~---~~~~L~l 186 (247)
+.+++++|.+++.+|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|. .+. ....|++
T Consensus 327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 356666666666666666777777777777777764 3445677777788888888877763443 233 2337888
Q ss_pred cCCcccccCCCcc-----eeee-------ecchhcC--CCceEeccCCeeeecCCcc-ccCCCchhhhh
Q 044683 187 QDRRTVGKPCGSL-----GLDI-------LPHLFRR--RPRRLAVEGFDLVLELPQI-VCGLPTCFALG 240 (247)
Q Consensus 187 ~~n~~~~~~~~~~-----~l~l-------~p~~~~~--~L~~L~l~~n~l~~~~~~~-~~~l~~L~~l~ 240 (247)
++|++++..|..+ .+++ +|.++.. +|++|++++|++++ +|.. +..+++|+.++
T Consensus 407 s~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 407 SSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred cCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEE
Confidence 8888776554432 3333 6776656 88999999998885 4544 77777777664
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=3.6e-25 Score=194.80 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+|++|++++|.+++..|..|.++++|++|++++|.+++..|..+.. +++|++|++++|.++...+..++.+++|++|++
T Consensus 57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG-LTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT-CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCC-cccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 4444444444444444444444444444444444444222333222 444444444444443222233333333333333
Q ss_pred cCCcc
Q 044683 83 SHNQL 87 (247)
Q Consensus 83 ~~n~~ 87 (247)
++|.+
T Consensus 136 ~~n~l 140 (606)
T 3vq2_A 136 AHNFI 140 (606)
T ss_dssp CSSCC
T ss_pred CCCcc
Confidence 33333
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=5.2e-25 Score=192.27 Aligned_cols=83 Identities=24% Similarity=0.241 Sum_probs=54.0
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCcccc-CChHhhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNG-SIPSSFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 80 (247)
++|++|++++|.+++..|..|..+++|++|++++|.++ .+|.. .+++|++|++++|.++. ..|..|+.+++|++|
T Consensus 76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L 151 (562)
T 3a79_B 76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151 (562)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEE
T ss_pred CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEE
Confidence 45666666666666655666666666666666666666 55555 26667777777777664 234667777777777
Q ss_pred eccCCccc
Q 044683 81 DISHNQLT 88 (247)
Q Consensus 81 ~l~~n~~~ 88 (247)
++++|.+.
T Consensus 152 ~L~~n~l~ 159 (562)
T 3a79_B 152 GLSAAKFR 159 (562)
T ss_dssp EEECSBCC
T ss_pred ecCCCccc
Confidence 77776654
No 31
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=3.8e-25 Score=197.12 Aligned_cols=232 Identities=24% Similarity=0.266 Sum_probs=185.6
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
-+.++.+++.++ .+|..+. +++++|++++|.++ .++...+..+++|++|++++|.+++..|.+++.+++|++|+++
T Consensus 6 ~~~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 6 HEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SSEEECCSSCCS-SCCSCSC--TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CCeeECCCCCcc-ccccccC--CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 357899999998 5666554 68999999999998 6666555559999999999999998889999999999999999
Q ss_pred CCcccccCchhHhhcCCCccEEEccCC--------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP 149 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n--------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 149 (247)
+|.++ .+|...+..+++|++|++++| +++.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 82 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 82 HNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp SSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99998 888876777999999999988 355899999999988888899999999999999999977
Q ss_pred Cchhhh--CCCCCCEEEccCCcCcCCCCCCCC------------------------------CCCeEeccCCcccccCCC
Q 044683 150 IPIEFC--QLELLTILDLSNNTIFGTLPSCFR------------------------------TSSFVKKQDRRTVGKPCG 197 (247)
Q Consensus 150 ~~~~l~--~~~~L~~L~l~~n~l~~~~~~~~~------------------------------~~~~L~l~~n~~~~~~~~ 197 (247)
.+..+. .+++|++|++++|.+++..+..+. ....|++++|.+++..|.
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~ 240 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence 666654 568999999999999877765443 122677777777766554
Q ss_pred cc---------eeee--------ecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 198 SL---------GLDI--------LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 198 ~~---------~l~l--------~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
.+ .+++ .|.++.. +|++|++++|++++..|..++++++|+.+.
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEe
Confidence 33 2222 3455555 788888888888877777777777666553
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=1.5e-25 Score=204.14 Aligned_cols=149 Identities=20% Similarity=0.122 Sum_probs=99.0
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
+++++|++++|.+++..+..|..+++|++|++++|...+.+++..+..+++|++|++++|.+....|.+|+.+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 46788888888888777777788888888888877554466444444477788888888877766677777777788888
Q ss_pred ccCCcccccCchh-HhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcc--cCcCeeeCcC
Q 044683 82 ISHNQLTGEIPER-MATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNL--LALEDIMMPN 143 (247)
Q Consensus 82 l~~n~~~~~~~~~-~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~--~~L~~L~l~~ 143 (247)
+++|.+++.++.. .+..+++|+.|++++|. |+.|++++|.+++..+..+..+ ++|+.|++++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~ 183 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence 8777776544433 34457777777777763 3366666666666555555444 4455555555
Q ss_pred CcccccC
Q 044683 144 NNLQGPI 150 (247)
Q Consensus 144 n~~~~~~ 150 (247)
|.+.+..
T Consensus 184 n~l~~~~ 190 (844)
T 3j0a_A 184 NSLYSRV 190 (844)
T ss_dssp SBSCCCC
T ss_pred Ccccccc
Confidence 5444433
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2e-25 Score=178.05 Aligned_cols=203 Identities=21% Similarity=0.210 Sum_probs=158.4
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
++++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 5889999999998777778888999999999999888 455444445888999999999988777778888999999999
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC-
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT- 161 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~- 161 (247)
++|.+. .++...+..+++|+.|++++|.++.+ .+|..+..+++|++|++++|++++..+..+..+++|+
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~---------~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSF---------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCC---------CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCcccee---------cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence 999887 55554445577777666666655422 3578889999999999999999977667777666666
Q ss_pred ---EEEccCCcCcCCCCCCCCCCC--eEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeec
Q 044683 162 ---ILDLSNNTIFGTLPSCFRTSS--FVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLE 225 (247)
Q Consensus 162 ---~L~l~~n~l~~~~~~~~~~~~--~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~ 225 (247)
.|++++|.+++..+..+...+ .|++++|.+++..+.. +.. +|+.|++++|.+++.
T Consensus 178 l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 178 LNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGI---------FDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp CCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTT---------TTTCCSCCEEECCSSCBCCC
T ss_pred cceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhH---------hcccccccEEEccCCccccc
Confidence 899999999977777766444 8999999998654322 343 899999999998853
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=1.8e-25 Score=178.08 Aligned_cols=207 Identities=20% Similarity=0.149 Sum_probs=170.2
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|+.|++++|.++.. ..+..+++|++|++++|.++ .++ .+.. +++|++|++++|.+++..+..+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALKE-LTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhcC-CCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 5789999999988742 45788999999999999998 444 4444 88999999999999977777788999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 161 (247)
+++|.++ .++...+..+++|+.|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ----------SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCcCC-ccCHHHhccCCCCCEEECCCCccC----------ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 9999998 677666666888887766666554 44566678899999999999999977777788999999
Q ss_pred EEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccccCCCchhh
Q 044683 162 ILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFA 238 (247)
Q Consensus 162 ~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 238 (247)
+|++++|.+++..+..+.. ...|++++|.+.+..| .++.|++++|+++|.+|..++.++....
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~--------------~l~~l~~~~n~~~g~ip~~~~~~~~~~~ 250 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP--------------GIRYLSEWINKHSGVVRNSAGSVAPDSA 250 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT--------------TTHHHHHHHHHTGGGBBCTTSCBCGGGS
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc--------------HHHHHHHHHHhCCCcccCcccccCCCCC
Confidence 9999999999877766643 3399999999988765 6889999999999999999888765443
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.3e-25 Score=181.69 Aligned_cols=227 Identities=24% Similarity=0.235 Sum_probs=182.3
Q ss_pred CCCCcEEEccCCccccc--cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCCh-HhhhcCCCC
Q 044683 1 MTSLKVLDASSNQLTGN--ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIP-SSFFDMKML 77 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 77 (247)
+++|++|++++|.++.. .+..+..+++|++|++++|.++ .+|..+.. +++|++|++++|.++...+ ..+..+++|
T Consensus 51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEET-CTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred cccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCC-CCCCCEEECCCCcccccccchhhhhccCC
Confidence 46789999999988743 3667778899999999999998 67777655 8899999999999885443 578889999
Q ss_pred CEEeccCCcccccCchhHhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcccCcCeeeCc
Q 044683 78 KSLDISHNQLTGEIPERMATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMP 142 (247)
Q Consensus 78 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~ 142 (247)
++|++++|.+. ..+...+..+++|+.|++++|. ++.|++++|.+++..+..+..+++|++|+++
T Consensus 129 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 129 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCcCC-ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECC
Confidence 99999999888 4444445568899999998883 4588999999998888899999999999999
Q ss_pred CCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC----CCeEeccCCcccccCCCcceeeeecchhcCCCceEecc
Q 044683 143 NNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT----SSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVE 218 (247)
Q Consensus 143 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~----~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~ 218 (247)
+|.+++..+..+..+++|++|++++|.+++..+..+.. ...|++++|.+++..+... ++.|+. ..+.+.+.
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~----~~~~l~-~~~~~~~~ 282 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS----FLQWIK-DQRQLLVE 282 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHH----HHHHHH-HTGGGBSC
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHH----HHHHHH-hhhhhhcc
Confidence 99999777778899999999999999999888876653 2399999999987643222 445555 55566677
Q ss_pred CCeeeecCCccccCCCc
Q 044683 219 GFDLVLELPQIVCGLPT 235 (247)
Q Consensus 219 ~n~l~~~~~~~~~~l~~ 235 (247)
.+.+....|..+.+.+-
T Consensus 283 ~~~~~C~~p~~~~g~~~ 299 (306)
T 2z66_A 283 VERMECATPSDKQGMPV 299 (306)
T ss_dssp GGGCBEEESGGGTTCBG
T ss_pred ccccccCCchhhCCcee
Confidence 78888888988877643
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.6e-25 Score=202.67 Aligned_cols=234 Identities=19% Similarity=0.197 Sum_probs=168.1
Q ss_pred CCCCcEEEccCCcccc-----------------ccCcccc--CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC
Q 044683 1 MTSLKVLDASSNQLTG-----------------NISPNLC--ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n 61 (247)
|++|++|++++|.+++ .+|..+. .+++|++|++++|.+.+.+|..+.. +++|++|++++|
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCC
Confidence 4678999999999987 3788877 8999999999999888888877776 889999999999
Q ss_pred c-ccc-CChHhhhcCC-------CCCEEeccCCcccccCch-hHhhcCCCccEEEccCCC------------ccEEEccC
Q 044683 62 A-FNG-SIPSSFFDMK-------MLKSLDISHNQLTGEIPE-RMATGCFSLEILALSNNS------------LQGLYLSD 119 (247)
Q Consensus 62 ~-l~~-~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~------------l~~l~l~~ 119 (247)
. +++ .+|..++.++ +|++|++++|.++ .+|. ..+..+++|+.|++++|. ++.|++++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCS
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcC
Confidence 7 876 6787776665 8999999999998 8887 234458899999988884 44778888
Q ss_pred CcCCCCCchhhhcccC-cCeeeCcCCcccccCchhhhCCCC--CCEEEccCCcCcCCCCCCC------------------
Q 044683 120 NRLFGRIPRWLGNLLA-LEDIMMPNNNLQGPIPIEFCQLEL--LTILDLSNNTIFGTLPSCF------------------ 178 (247)
Q Consensus 120 n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~~--L~~L~l~~n~l~~~~~~~~------------------ 178 (247)
|.++ .+|..+..+++ |++|++++|.++ .+|..+...+. |+.|++++|.+++.+|...
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred Cccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 8888 77877888888 888888888887 66666555433 6666666666665433211
Q ss_pred --------------CCCCeEeccCCcccccCCCc--------------c-eeee-------ecchhc--C--CCceEecc
Q 044683 179 --------------RTSSFVKKQDRRTVGKPCGS--------------L-GLDI-------LPHLFR--R--RPRRLAVE 218 (247)
Q Consensus 179 --------------~~~~~L~l~~n~~~~~~~~~--------------~-~l~l-------~p~~~~--~--~L~~L~l~ 218 (247)
.....|++++|.++ .+|.. + .|++ +|..+. . +|+.|+++
T Consensus 683 N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 683 NEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp SCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECC
T ss_pred CcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeC
Confidence 11225566666555 22221 1 2222 566654 3 77777777
Q ss_pred CCeeeecCCccccCCCchhhhh
Q 044683 219 GFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 219 ~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
+|++++ +|..++++++|+.|.
T Consensus 762 ~N~L~~-lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 762 YNCFSS-FPTQPLNSSQLKAFG 782 (876)
T ss_dssp SSCCSS-CCCGGGGCTTCCEEE
T ss_pred CCCCCc-cchhhhcCCCCCEEE
Confidence 777775 566677777766664
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=4.2e-25 Score=177.04 Aligned_cols=213 Identities=21% Similarity=0.183 Sum_probs=172.6
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH 84 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 84 (247)
++++.++++++ .+|..+ .+++++|++++|.++ .++...+..+++|++|++++|.++...|.++..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 57888888888 455544 468999999999999 55554445589999999999999987788999999999999999
Q ss_pred Cc-ccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEE
Q 044683 85 NQ-LTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163 (247)
Q Consensus 85 n~-~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 163 (247)
|. +. .++...+..+++|+.|++++|.+ ++..+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 90 n~~l~-~~~~~~~~~l~~L~~L~l~~n~l----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 90 NAQLR-SVDPATFHGLGRLHTLHLDRCGL----------QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CTTCC-CCCTTTTTTCTTCCEEECTTSCC----------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcc-ccCHHHhcCCcCCCEEECCCCcC----------CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 97 76 66555555678887666666554 44557788899999999999999997767778999999999
Q ss_pred EccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhh
Q 044683 164 DLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFA 238 (247)
Q Consensus 164 ~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 238 (247)
++++|.+++..+..+.. ...|++++|.+++..|. ++.. +|+.|++++|++++..+..+..+++|+.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH---------AFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT---------TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccCHh---------HccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 99999999766665653 33999999999876544 3454 8999999999999877777899988887
Q ss_pred hhc
Q 044683 239 LGK 241 (247)
Q Consensus 239 l~~ 241 (247)
++-
T Consensus 230 L~l 232 (285)
T 1ozn_A 230 LRL 232 (285)
T ss_dssp EEC
T ss_pred Eec
Confidence 653
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=194.74 Aligned_cols=124 Identities=23% Similarity=0.208 Sum_probs=83.6
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 35777888888777666677777778888888888777444545544 777888888877777 45554 677777777
Q ss_pred ccCCcccc-cCchhHhhcCCCccEEEccCCCc-------------cEEEccCCcC--CCCCchhh
Q 044683 82 ISHNQLTG-EIPERMATGCFSLEILALSNNSL-------------QGLYLSDNRL--FGRIPRWL 130 (247)
Q Consensus 82 l~~n~~~~-~~~~~~~~~~~~L~~l~l~~n~l-------------~~l~l~~n~~--~~~~~~~~ 130 (247)
+++|.+++ .+|..+. .+++|+.|++++|.+ +.+++++|.+ .+..|..+
T Consensus 97 L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l 160 (520)
T 2z7x_B 97 LSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160 (520)
T ss_dssp CCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTT
T ss_pred ccCCccccccchhhhc-cCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccc
Confidence 77777763 2444443 477777777777744 6677777766 44444433
No 39
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=2.9e-25 Score=200.98 Aligned_cols=233 Identities=18% Similarity=0.253 Sum_probs=152.6
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCc-eee-cCCchhhhhcc-------cccEEEccCCccccCChH--
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNND-LRG-HIPVEIGTYLL-------VFIHLNLSRNAFNGSIPS-- 69 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~~l~-------~L~~L~l~~n~l~~~~~~-- 69 (247)
+++|++|++++|.+.+.+|..+.++++|+.|++++|. +++ .+|..++. ++ +|++|++++|.++ .+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~-L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR-LADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH-HHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHh-hhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 4678888888888888888888888888888888887 776 67776654 44 7888888888877 6666
Q ss_pred hhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCC-------------C-ccEEEccCCcCCCCCchhhh----
Q 044683 70 SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN-------------S-LQGLYLSDNRLFGRIPRWLG---- 131 (247)
Q Consensus 70 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n-------------~-l~~l~l~~n~~~~~~~~~~~---- 131 (247)
.++.+++|++|++++|.++ .+| .+..+++|+.|++++| . ++.|++++|.++ .+|..+.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 7777777777777777776 666 2333555555555555 1 334444444444 2332221
Q ss_pred ---------------------------cccCcCeeeCcCCcccccCchh-hhCCCCCCEEEccCCcCcCCCCCCCC----
Q 044683 132 ---------------------------NLLALEDIMMPNNNLQGPIPIE-FCQLELLTILDLSNNTIFGTLPSCFR---- 179 (247)
Q Consensus 132 ---------------------------~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~---- 179 (247)
..++|+.|++++|.++ .+|.. +..+++|+.|++++|.++...+..+.
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence 1235666666666666 34433 34678888888888888733333333
Q ss_pred ------CCCeEeccCCcccccCCCcc---------eeee-------ecchhcC--CCceEeccC------CeeeecCCcc
Q 044683 180 ------TSSFVKKQDRRTVGKPCGSL---------GLDI-------LPHLFRR--RPRRLAVEG------FDLVLELPQI 229 (247)
Q Consensus 180 ------~~~~L~l~~n~~~~~~~~~~---------~l~l-------~p~~~~~--~L~~L~l~~------n~l~~~~~~~ 229 (247)
....|++++|+++ .+|..+ .|++ +|.++.. +|+.|++++ |++.+.+|..
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 2337778887777 333322 3333 6666666 788888865 6777778888
Q ss_pred ccCCCchhhhhc
Q 044683 230 VCGLPTCFALGK 241 (247)
Q Consensus 230 ~~~l~~L~~l~~ 241 (247)
++++++|+.|+-
T Consensus 802 l~~L~~L~~L~L 813 (876)
T 4ecn_A 802 ITTCPSLIQLQI 813 (876)
T ss_dssp GGGCSSCCEEEC
T ss_pred HhcCCCCCEEEC
Confidence 888877776653
No 40
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=4.8e-25 Score=200.80 Aligned_cols=229 Identities=18% Similarity=0.129 Sum_probs=129.6
Q ss_pred CCCcEEEccCCcccccc-CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHh--hhcCCCCC
Q 044683 2 TSLKVLDASSNQLTGNI-SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSS--FFDMKMLK 78 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~ 78 (247)
++|++|++++|...+.+ |..|.++++|++|++++|.+++..|..+.. +++|++|++++|.+++..|.. ++.+++|+
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS-CSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC-CcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 45666666666433333 556666666666666666666444444443 666666666666665444433 55666666
Q ss_pred EEeccCCcccccCchhHhhcCCCccEEEccCCC----------------------------------------------c
Q 044683 79 SLDISHNQLTGEIPERMATGCFSLEILALSNNS----------------------------------------------L 112 (247)
Q Consensus 79 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~----------------------------------------------l 112 (247)
+|++++|.+++..+...+..+++|+.|++++|. +
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 666666666533333334446666666666552 3
Q ss_pred cEEEccCCcCCCCCchhhhc--------------------------------------ccCcCeeeCcCCcccccCchhh
Q 044683 113 QGLYLSDNRLFGRIPRWLGN--------------------------------------LLALEDIMMPNNNLQGPIPIEF 154 (247)
Q Consensus 113 ~~l~l~~n~~~~~~~~~~~~--------------------------------------~~~L~~L~l~~n~~~~~~~~~l 154 (247)
+.+++++|.+++..+..+.. .++++.|++++|.+++..+..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 34444444443333222211 1345555666665555555555
Q ss_pred hCCCCCCEEEccCCcCcCCCCCCCCCC---CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCcc
Q 044683 155 CQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQI 229 (247)
Q Consensus 155 ~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~ 229 (247)
..+++|+.|++++|.+++..+..|... ..|++++|.+++..+ .++.. +|+.|++++|++++..+..
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~N~i~~~~~~~ 357 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS---------SNFYGLPKVAYIDLQKNHIAIIQDQT 357 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS---------CSCSSCTTCCEEECCSCCCCCCCSSC
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH---------HHhcCCCCCCEEECCCCCCCccChhh
Confidence 666666666666666665555544322 266666666654433 33444 7888888888777766667
Q ss_pred ccCCCchhhhh
Q 044683 230 VCGLPTCFALG 240 (247)
Q Consensus 230 ~~~l~~L~~l~ 240 (247)
|..+++|+.|+
T Consensus 358 ~~~l~~L~~L~ 368 (844)
T 3j0a_A 358 FKFLEKLQTLD 368 (844)
T ss_dssp SCSCCCCCEEE
T ss_pred hcCCCCCCEEE
Confidence 77777776664
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.3e-25 Score=195.76 Aligned_cols=224 Identities=20% Similarity=0.175 Sum_probs=162.3
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
.+++.+++++|.+....+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..|+.+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 5689999999999977777788899999999999999954444554 499999999999999988888889999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCCCCchhhhcc--------------
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFGRIPRWLGNL-------------- 133 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~~~~~~~~~~-------------- 133 (247)
+++|.++ .+|..++..+++|+.|++++|. ++.|++++|.+++.....+..+
T Consensus 130 L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 130 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred eeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence 9999998 8888877779999999999984 4478888888875432222111
Q ss_pred -----------------------cCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---CeEecc
Q 044683 134 -----------------------LALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SFVKKQ 187 (247)
Q Consensus 134 -----------------------~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~l~ 187 (247)
++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+... ..|+++
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred CCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 123334444444432 2345566666666666666665555555322 266666
Q ss_pred CCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 188 DRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 188 ~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
+|.+++ +|..+.. +|+.|++++|.++ .+|..++.+++|+.|+
T Consensus 287 ~N~l~~----------l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 287 NNRLVA----------LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp TSCCCE----------EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCCCC----------CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 666665 2333333 8999999999888 4677777777776654
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=3.2e-25 Score=193.63 Aligned_cols=124 Identities=23% Similarity=0.220 Sum_probs=99.5
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
+++++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.++ .+|.. .+++|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF-NQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT-CTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC-CCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 46899999999999877789999999999999999999555555554 899999999999998 56655 799999999
Q ss_pred ccCCcccccCch-hHhhcCCCccEEEccCCCc-------------cEEEccCCcC--CCCCchhh
Q 044683 82 ISHNQLTGEIPE-RMATGCFSLEILALSNNSL-------------QGLYLSDNRL--FGRIPRWL 130 (247)
Q Consensus 82 l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l-------------~~l~l~~n~~--~~~~~~~~ 130 (247)
+++|.++ .++. ..+..+++|+.|++++|.+ +.+++++|.+ ++..|..+
T Consensus 128 Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp CCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred CCCCCcc-ccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccc
Confidence 9999998 5442 3344699999999998854 6788888877 44444333
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=1.5e-24 Score=188.59 Aligned_cols=111 Identities=17% Similarity=0.038 Sum_probs=62.3
Q ss_pred hhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc---eeee---
Q 044683 130 LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL---GLDI--- 203 (247)
Q Consensus 130 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~---~l~l--- 203 (247)
+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++...........|++++|++++.+...- .|++
T Consensus 383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN 461 (549)
T ss_dssp GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC
Confidence 444455555555555554 344444445555555555555542211111233356666666654322111 3333
Q ss_pred ----ecchhcC-CCceEeccCCeeeecCCccccCCCchhhhhc
Q 044683 204 ----LPHLFRR-RPRRLAVEGFDLVLELPQIVCGLPTCFALGK 241 (247)
Q Consensus 204 ----~p~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~~ 241 (247)
+|.+... +|++|++++|++++.+|..+..+++|+.++-
T Consensus 462 ~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 462 KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEe
Confidence 6654333 8999999999999888888888888877653
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=2.5e-24 Score=176.13 Aligned_cols=219 Identities=21% Similarity=0.218 Sum_probs=150.1
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+++.++++++.++ .+|..+. +.+++|++++|.+++..+..+. .+++|++|++++|.++...|.+++.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4889999999988 5666553 6899999999999844444554 4899999999999999877899999999999999
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCC--------------ccEEEccCCcCCC--CCchhhhcccCcCeeeCcCCcc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNS--------------LQGLYLSDNRLFG--RIPRWLGNLLALEDIMMPNNNL 146 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~--------------l~~l~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~~ 146 (247)
++|.++ .+|..++ ++|+.+++++|. ++.+++++|.++. ..+..+..+ +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999998 8887654 689999988884 4477888887753 445555544 555555555555
Q ss_pred cccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcc-------eeee-------ecchhc
Q 044683 147 QGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI-------LPHLFR 209 (247)
Q Consensus 147 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l-------~p~~~~ 209 (247)
++ +|..+. ++|++|++++|.+++..+..+.. ...|++++|.+++..+..+ .+++ +|.++.
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~ 261 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP 261 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhh
Confidence 52 332221 45555555555555444444432 1255556655555443222 1222 555565
Q ss_pred C--CCceEeccCCeeeecCCccccCC
Q 044683 210 R--RPRRLAVEGFDLVLELPQIVCGL 233 (247)
Q Consensus 210 ~--~L~~L~l~~n~l~~~~~~~~~~l 233 (247)
. +|+.|++++|++++..+..|+..
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred cCccCCEEECCCCCCCccChhHcccc
Confidence 5 78888888888887666666553
No 45
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.5e-25 Score=189.38 Aligned_cols=170 Identities=16% Similarity=0.119 Sum_probs=105.3
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++..|..|..+++|++|++++|.+++..| +. .+++|++|++++|.+++. + ..++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 367888888888887777788888888888888888875443 33 377888888888887743 2 237788888
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhh-CCCCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC-QLELL 160 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L 160 (247)
+++|.++ .++.. .+++|+.|++++| .+++..|..+..+++|++|++++|.+++..|..+. .+++|
T Consensus 106 L~~N~l~-~~~~~---~l~~L~~L~L~~N----------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 106 AANNNIS-RVSCS---RGQGKKNIYLANN----------KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp CCSSCCC-CEEEC---CCSSCEEEECCSS----------CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred CcCCcCC-CCCcc---ccCCCCEEECCCC----------CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 8888887 34332 2455665555555 44444454555555555666666655554444443 45555
Q ss_pred CEEEccCCcCcCCCCCCC-CCCCeEeccCCcccc
Q 044683 161 TILDLSNNTIFGTLPSCF-RTSSFVKKQDRRTVG 193 (247)
Q Consensus 161 ~~L~l~~n~l~~~~~~~~-~~~~~L~l~~n~~~~ 193 (247)
+.|++++|.+++..+... .....|++++|.+++
T Consensus 172 ~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE
T ss_pred cEEecCCCccccccccccCCCCCEEECCCCCCCC
Confidence 566666655554322221 223355555555554
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=3.1e-24 Score=182.68 Aligned_cols=193 Identities=22% Similarity=0.177 Sum_probs=170.8
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 468999999999999888899999999999999999998 7777766669999999999999997767789999999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCC------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNS------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
++++|...+.++...+..+++|+.|++++|. ++.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce
Confidence 9999544347888777789999999999984 5589999999999889999999999999999999998
Q ss_pred cCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCccccc
Q 044683 149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGK 194 (247)
Q Consensus 149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~ 194 (247)
..+..+..+++|+.|++++|++++..+..+.. ...|++++|.+.-.
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 88899999999999999999999777766653 33999999997643
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=2.9e-24 Score=182.24 Aligned_cols=192 Identities=22% Similarity=0.205 Sum_probs=170.0
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.++...+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|
T Consensus 87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 468999999999999888899999999999999999998 7777666669999999999999997777789999999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCC------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNS------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
++++|...+.++...+..+++|+.|++++|. ++.|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE
Confidence 9999544447888778889999999999984 5589999999998889999999999999999999998
Q ss_pred cCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccc
Q 044683 149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVG 193 (247)
Q Consensus 149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~ 193 (247)
..+..+..+++|++|++++|++++..+..+.. ...|++++|.+.-
T Consensus 246 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88889999999999999999999777766653 3399999999763
No 48
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.8e-24 Score=186.78 Aligned_cols=38 Identities=24% Similarity=0.264 Sum_probs=20.7
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCcee
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLR 39 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 39 (247)
++|++|++++|.+++..+..|.++++|++|++++|.++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 44555555555555444455555555555555555554
No 49
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=6.2e-25 Score=178.71 Aligned_cols=169 Identities=17% Similarity=0.141 Sum_probs=89.1
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+|++|++++|.+++..+..|..+++|++|++++|.+++..+ + ..+++|++|++++|.+++. + ..++|++|++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~-~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l 106 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--L-ESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA 106 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--E-TTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--h-hhcCCCCEEECcCCccccc-c----CCCCcCEEEC
Confidence 56666666666665555566666666666666666653222 2 2356666666666666532 2 2356666666
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhh-CCCCCC
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFC-QLELLT 161 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~ 161 (247)
++|.++ .++.. .+++|+.+++++ |.+++..+..+..+++|++|++++|.+++..+..+. .+++|+
T Consensus 107 ~~n~l~-~~~~~---~~~~L~~L~l~~----------N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 107 ANNNIS-RVSCS---RGQGKKNIYLAN----------NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (317)
T ss_dssp CSSCCS-EEEEC---CCSSCEEEECCS----------SCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCCccC-CcCcc---ccCCCCEEECCC----------CCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCC
Confidence 666665 33322 134455555544 444444444455555555555555555544444332 455555
Q ss_pred EEEccCCcCcCCCCCC-CCCCCeEeccCCcccc
Q 044683 162 ILDLSNNTIFGTLPSC-FRTSSFVKKQDRRTVG 193 (247)
Q Consensus 162 ~L~l~~n~l~~~~~~~-~~~~~~L~l~~n~~~~ 193 (247)
+|++++|.+++..... +.....|++++|++++
T Consensus 173 ~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp EEECTTSCCCEEECCCCCTTCCEEECCSSCCCE
T ss_pred EEECCCCcCcccccccccccCCEEECCCCcCCc
Confidence 5555555555332211 1223355555555554
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-25 Score=181.08 Aligned_cols=206 Identities=20% Similarity=0.186 Sum_probs=159.1
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. .++|++|++++|.++...+. .+++|++|
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L 125 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNI 125 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEE
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-cccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEE
Confidence 4689999999999986554 899999999999999998 4443 47899999999999865433 47889999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhh-hcccCcCeeeCcCCcccccCchhhhCCCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWL-GNLLALEDIMMPNNNLQGPIPIEFCQLEL 159 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 159 (247)
++++|.++ .++...+..+++|+.|++++|.++.+ .+..+ ..+++|++|++++|.+++. + ....+++
T Consensus 126 ~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~----------~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~ 192 (317)
T 3o53_A 126 YLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTV----------NFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAK 192 (317)
T ss_dssp ECCSSCCC-SGGGBCTGGGSSEEEEECTTSCCCEE----------EGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTT
T ss_pred ECCCCCCC-CccchhhhccCCCCEEECCCCCCCcc----------cHHHHhhccCcCCEEECCCCcCccc-c-ccccccc
Confidence 99999998 56554455577888777777766644 34444 4678999999999999854 3 2335899
Q ss_pred CCEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeee-ecCCccccCC
Q 044683 160 LTILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLV-LELPQIVCGL 233 (247)
Q Consensus 160 L~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~-~~~~~~~~~l 233 (247)
|++|++++|.+++..+. +. ....|++++|.+++ +|.++.. +|+.|++++|.++ +.++..+..+
T Consensus 193 L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~----------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~ 261 (317)
T 3o53_A 193 LKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL----------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (317)
T ss_dssp CCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE----------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred CCEEECCCCcCCcchhh-hcccCcccEEECcCCcccc----------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence 99999999999865554 43 33499999999885 2333444 8999999999998 6677788888
Q ss_pred Cchhhhhc
Q 044683 234 PTCFALGK 241 (247)
Q Consensus 234 ~~L~~l~~ 241 (247)
++|+.+..
T Consensus 262 ~~L~~l~l 269 (317)
T 3o53_A 262 QRVQTVAK 269 (317)
T ss_dssp HHHHHHHH
T ss_pred ccceEEEC
Confidence 87777653
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=3.3e-24 Score=188.66 Aligned_cols=229 Identities=18% Similarity=0.153 Sum_probs=121.1
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|+.|++++|.+. .++ .+..+++|++|++++|.+. .+|. + .+++|++|++++|...... .+..+++|++|+
T Consensus 285 ~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 356 (606)
T 3vq2_A 285 ANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-QFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLD 356 (606)
T ss_dssp TTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-SCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEE
T ss_pred CCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-cccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEE
Confidence 45666777777665 334 5666667777777777663 6662 2 2556666666655333222 344555555555
Q ss_pred ccCCccccc--CchhHhhcCCCccEEEccCCC-------------ccEEEccCCcCCCCCc-hhhhcccCcCeeeCcCCc
Q 044683 82 ISHNQLTGE--IPERMATGCFSLEILALSNNS-------------LQGLYLSDNRLFGRIP-RWLGNLLALEDIMMPNNN 145 (247)
Q Consensus 82 l~~n~~~~~--~~~~~~~~~~~L~~l~l~~n~-------------l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~ 145 (247)
+++|.+++. ++..+ ..+++|+.+++++|. ++.+++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 357 ls~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSD-LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSSCEEEEEECCHHH-HCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccCCCcchhhhh-ccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 555555421 13322 235555555555552 2345555555554444 345555555555555555
Q ss_pred ccccCchhhhCCCCCCEEEccCCcCcCC-CCCCCCC---CCeEeccCCcccccCCCcc-------eeee--------ecc
Q 044683 146 LQGPIPIEFCQLELLTILDLSNNTIFGT-LPSCFRT---SSFVKKQDRRTVGKPCGSL-------GLDI--------LPH 206 (247)
Q Consensus 146 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~---~~~L~l~~n~~~~~~~~~~-------~l~l--------~p~ 206 (247)
+++..|..+..+++|++|++++|.+++. +|..+.. ...|++++|.+++..|..+ .+++ .|.
T Consensus 436 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred CCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 5555555555555555555555555542 3444332 2255555555555443322 1111 344
Q ss_pred hhcC--CCceEeccCCeeeecCCccccCCC-chhhhh
Q 044683 207 LFRR--RPRRLAVEGFDLVLELPQIVCGLP-TCFALG 240 (247)
Q Consensus 207 ~~~~--~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~ 240 (247)
++.. +|++|++++|+++ .+|..+..++ +|+.+.
T Consensus 516 ~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN 551 (606)
T ss_dssp GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEE
Confidence 4555 6777777777777 3555566664 355543
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.3e-24 Score=176.51 Aligned_cols=192 Identities=18% Similarity=0.112 Sum_probs=89.2
Q ss_pred CCCCCcEEEccCCceeecCCchhh-hhcccccEEEccCCccccCChHhhhcC-----CCCCEEeccCCcccccCchhHhh
Q 044683 24 ELVLLRELYIDNNDLRGHIPVEIG-TYLLVFIHLNLSRNAFNGSIPSSFFDM-----KMLKSLDISHNQLTGEIPERMAT 97 (247)
Q Consensus 24 ~l~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~ 97 (247)
.+++|++|++++|.+++.+|..++ ..+++|++|++++|.+++. |..++.+ ++|++|++++|.+. .++...+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhc
Confidence 455556666666655555555442 2355556666666655543 4444444 55666666665555 33322333
Q ss_pred cCCCccEEEccCCCccEEEccCCcCCCC--Cchhh--hcccCcCeeeCcCCcccc---cCchhhhCCCCCCEEEccCCcC
Q 044683 98 GCFSLEILALSNNSLQGLYLSDNRLFGR--IPRWL--GNLLALEDIMMPNNNLQG---PIPIEFCQLELLTILDLSNNTI 170 (247)
Q Consensus 98 ~~~~L~~l~l~~n~l~~l~l~~n~~~~~--~~~~~--~~~~~L~~L~l~~n~~~~---~~~~~l~~~~~L~~L~l~~n~l 170 (247)
.+++|+.|++++|.+. +. .+..+ ..+++|++|++++|.+++ .....+..+++|++|++++|.+
T Consensus 171 ~l~~L~~L~Ls~N~l~----------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l 240 (312)
T 1wwl_A 171 VFPALSTLDLSDNPEL----------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240 (312)
T ss_dssp CCSSCCEEECCSCTTC----------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC
T ss_pred cCCCCCEEECCCCCcC----------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC
Confidence 3555554444444321 11 11222 445555555555555542 1112223445555555555555
Q ss_pred cCCCC-CCCC---CCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccccCCCchhhh
Q 044683 171 FGTLP-SCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTCFAL 239 (247)
Q Consensus 171 ~~~~~-~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 239 (247)
++..| ..+. ....|++++|.++ .+|..+ ..+|++|++++|++++. |. +..+++|+.+
T Consensus 241 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~---------~~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L 301 (312)
T 1wwl_A 241 RDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL---------PAKLSVLDLSYNRLDRN-PS-PDELPQVGNL 301 (312)
T ss_dssp CSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC---------CSEEEEEECCSSCCCSC-CC-TTTSCEEEEE
T ss_pred CcccchhhhhhcCCCCEEECCCCccC-hhhhhc---------cCCceEEECCCCCCCCC-hh-HhhCCCCCEE
Confidence 54332 1111 2225555555555 222221 11455555555555543 33 5555554444
No 53
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4e-23 Score=164.30 Aligned_cols=198 Identities=24% Similarity=0.261 Sum_probs=140.8
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
..+.++++++.++ .+|..+. +.+++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3577888888888 4555544 57888888888887 566544445888888888888888555556677888888888
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 162 (247)
++|.+. .++...+..+++|+.|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK----------SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp CSSCCC-CCCTTTTTTCSSCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcCC-cCCHhHcccccCCCEEECCCCccC----------eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 888887 677666666777776666655443 344556677788888888888887655566777888888
Q ss_pred EEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683 163 LDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL 224 (247)
Q Consensus 163 L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~ 224 (247)
|++++|.+++..+..|.. ...|++++|++++..+.. +.. +|+.|++++|.+..
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA---------FDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---------TTTCTTCCEEECCSSCBCC
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH---------hccccCCCEEEecCCCeeC
Confidence 888888887666655542 237888888877543321 333 78888888887754
No 54
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=3.5e-25 Score=179.75 Aligned_cols=202 Identities=17% Similarity=0.133 Sum_probs=160.2
Q ss_pred CCCCcEEEccCCccccccCccc--cCCCCCcEEEccCCceeecCCchhhhhc-----ccccEEEccCCccccCChHhhhc
Q 044683 1 MTSLKVLDASSNQLTGNISPNL--CELVLLRELYIDNNDLRGHIPVEIGTYL-----LVFIHLNLSRNAFNGSIPSSFFD 73 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~ 73 (247)
+++|++|++++|.+++..|..+ ..+++|++|++++|.++ .+|..+.. + ++|++|++++|.+++..|..++.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~-l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA-TRDAWLAE-LQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS-SSSSHHHH-HHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc-chhHHHHH-HHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4679999999999998888876 88999999999999999 44776665 5 89999999999999887789999
Q ss_pred CCCCCEEeccCCcccccC--chhH-hhcCCCccEEEccCCCccEEEccCCcCCCCCc-hhhhcccCcCeeeCcCCccccc
Q 044683 74 MKMLKSLDISHNQLTGEI--PERM-ATGCFSLEILALSNNSLQGLYLSDNRLFGRIP-RWLGNLLALEDIMMPNNNLQGP 149 (247)
Q Consensus 74 l~~L~~L~l~~n~~~~~~--~~~~-~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~ 149 (247)
+++|++|++++|.+.+.+ +..+ +..+++|+.|++++|.++.+. .++ ..+..+++|++|++++|.+++.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS--------GVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH--------HHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH--------HHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 999999999999976442 3232 245777877777666654210 122 3345779999999999999976
Q ss_pred Cc-hhhhCCCCCCEEEccCCcCcCCCCCCCC-CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683 150 IP-IEFCQLELLTILDLSNNTIFGTLPSCFR-TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL 224 (247)
Q Consensus 150 ~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~ 224 (247)
.| ..+..+++|++|++++|.++ .+|..+. ....|++++|++++. |. +.. +|++|++++|++++
T Consensus 244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~-p~----------~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRN-PS----------PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSC-CC----------TTTSCEEEEEECTTCTTTC
T ss_pred cchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCC-hh----------HhhCCCCCEEeccCCCCCC
Confidence 64 45567899999999999999 6666554 334999999999975 32 233 89999999999875
No 55
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=2.2e-23 Score=183.78 Aligned_cols=90 Identities=17% Similarity=0.205 Sum_probs=76.3
Q ss_pred CchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceee
Q 044683 126 IPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLD 202 (247)
Q Consensus 126 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~ 202 (247)
.|..+..+++|++|++++|++++..|..|.++++|++|++++|++++..+..|.. ...|++++|++++..|..+
T Consensus 486 ~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--- 562 (635)
T 4g8a_A 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--- 562 (635)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT---
T ss_pred CchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH---
Confidence 4556777889999999999999888999999999999999999999888877753 3399999999998766543
Q ss_pred eecchhcC---CCceEeccCCeeee
Q 044683 203 ILPHLFRR---RPRRLAVEGFDLVL 224 (247)
Q Consensus 203 l~p~~~~~---~L~~L~l~~n~l~~ 224 (247)
.. +|+.|++++|.+..
T Consensus 563 ------~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 563 ------QHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp ------TCCCTTCCEEECTTCCBCC
T ss_pred ------HhhhCcCCEEEeeCCCCcc
Confidence 32 79999999999874
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=2.9e-24 Score=186.88 Aligned_cols=169 Identities=18% Similarity=0.138 Sum_probs=140.2
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.. +++|++|++++|.+++..+..++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 46899999999999888889999999999999999999555555554 89999999999999987777899999999999
Q ss_pred ccCCcccc-cCchhHhhcCCCccEEEccCCC---------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc
Q 044683 82 ISHNQLTG-EIPERMATGCFSLEILALSNNS---------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN 145 (247)
Q Consensus 82 l~~n~~~~-~~~~~~~~~~~~L~~l~l~~n~---------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 145 (247)
+++|.+++ ..|. .+..+++|+.|++++|. ++.|++++|.+++..|..+..+++|++|++++|.
T Consensus 105 Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 99999973 2333 34568999999998874 4478888999988888888888888888888888
Q ss_pred ccccCchh-hhCCCCCCEEEccCCcCcCC
Q 044683 146 LQGPIPIE-FCQLELLTILDLSNNTIFGT 173 (247)
Q Consensus 146 ~~~~~~~~-l~~~~~L~~L~l~~n~l~~~ 173 (247)
+. .++.. +..+++|++|++++|.+++.
T Consensus 184 ~~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 184 SA-FLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ST-THHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cc-ccchhhHhhcccccEEEccCCccccc
Confidence 76 33433 45688899999999988763
No 57
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=8e-23 Score=168.06 Aligned_cols=223 Identities=19% Similarity=0.226 Sum_probs=140.7
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.++.. +.+..+++|++|++++|.++ .++. +. .+++|++|++++|...... ..+..+++|+++
T Consensus 87 l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~-~~~~-~~-~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L 160 (347)
T 4fmz_A 87 LVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNIS-DISP-LA-NLTKMYSLNLGANHNLSDL-SPLSNMTGLNYL 160 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCC-CCGG-GT-TCTTCCEEECTTCTTCCCC-GGGTTCTTCCEE
T ss_pred CCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCccc-Cchh-hc-cCCceeEEECCCCCCcccc-cchhhCCCCcEE
Confidence 46789999999988753 46888899999999999887 5555 33 3788888888888555333 337777788888
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCC------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNS------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
++++|.+. .++. +..+++|+.+++++|. ++.+++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 161 ~l~~~~~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 161 TVTESKVK-DVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp ECCSSCCC-CCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred EecCCCcC-Cchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC
Confidence 88887776 4443 3457777777777763 3356666666654333 5566667777777776663
Q ss_pred cCchhhhCCCCCCEEEccCCcCcCCCCC--CCCCCCeEeccCCcccccCCCcc------eeee--------ecchhcC--
Q 044683 149 PIPIEFCQLELLTILDLSNNTIFGTLPS--CFRTSSFVKKQDRRTVGKPCGSL------GLDI--------LPHLFRR-- 210 (247)
Q Consensus 149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~L~l~~n~~~~~~~~~~------~l~l--------~p~~~~~-- 210 (247)
. +. +..+++|++|++++|.+++. +. .+.....|++++|.+++. +... .+++ .|.++..
T Consensus 236 ~-~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 311 (347)
T 4fmz_A 236 L-SP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311 (347)
T ss_dssp C-GG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCT
T ss_pred C-cc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHhhccc
Confidence 3 22 56666666666666666632 21 111223666666666543 1100 1221 3334444
Q ss_pred CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 211 RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 211 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
+|++|++++|++++..| +..+++|+.++
T Consensus 312 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 339 (347)
T 4fmz_A 312 NLTTLFLSQNHITDIRP--LASLSKMDSAD 339 (347)
T ss_dssp TCSEEECCSSSCCCCGG--GGGCTTCSEES
T ss_pred cCCEEEccCCccccccC--hhhhhccceee
Confidence 77777777777776544 66666666554
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6.2e-23 Score=163.18 Aligned_cols=183 Identities=26% Similarity=0.281 Sum_probs=155.3
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
+++++|++++|.+++..+..|..+++|++|++++|.++ .++..++..+++|++|++++|.++...+..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 35899999999999777778999999999999999998 88888777799999999999999977677788999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 161 (247)
+++|.++ .++...+..+++|+.|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 116 l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 184 (270)
T 2o6q_A 116 LDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ----------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELK 184 (270)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCCccC-eeCHHHhCcCcCCCEEECCCCcCC----------ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcC
Confidence 9999998 677666666888887777666554 34455678899999999999999977777788999999
Q ss_pred EEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCC
Q 044683 162 ILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPC 196 (247)
Q Consensus 162 ~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~ 196 (247)
+|++++|.+++..+..+.. ...|++++|++....+
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred EEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999999766666653 3399999999876543
No 59
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1e-22 Score=167.44 Aligned_cols=226 Identities=22% Similarity=0.309 Sum_probs=177.2
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++.. . +..+++|++|++++|.++ .++ .+. .+++|++|++++|.++. .+. +..+++|+++
T Consensus 65 ~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~n~i~-~~~-~~~-~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGTNKIT-DIS-ALQ-NLTNLRELYLNEDNISD-ISP-LANLTKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CCG-GGT-TCTTCSEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred cCCccEEEccCCccccch-h-hhcCCcCCEEEccCCccc-Cch-HHc-CCCcCCEEECcCCcccC-chh-hccCCceeEE
Confidence 578999999999998543 3 899999999999999998 565 344 48999999999999984 444 8899999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCC------------ccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNS------------LQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~------------l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
++++|.....++. +..+++|+.+++++|. ++.+++++|.+.+..+ +..+++|+++++++|.+++
T Consensus 138 ~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 138 NLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp ECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 9999965535444 4569999999999884 5689999999985433 7889999999999999985
Q ss_pred cCchhhhCCCCCCEEEccCCcCcCCCC-CCCCCCCeEeccCCcccccCCC----cc-eeee-------ecchhcC--CCc
Q 044683 149 PIPIEFCQLELLTILDLSNNTIFGTLP-SCFRTSSFVKKQDRRTVGKPCG----SL-GLDI-------LPHLFRR--RPR 213 (247)
Q Consensus 149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~l~~n~~~~~~~~----~~-~l~l-------~p~~~~~--~L~ 213 (247)
..+ +..+++|++|++++|.+++..+ ..+.....|++++|.+++.... .+ .+++ +| ++.. +|+
T Consensus 214 ~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~ 290 (347)
T 4fmz_A 214 ITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLN 290 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred Cch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCC
Confidence 433 7889999999999999986544 1222344999999998864111 01 3333 33 3444 899
Q ss_pred eEeccCCeeeecCCccccCCCchhhhh
Q 044683 214 RLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 214 ~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
+|++++|++++..+..++.+++|+.++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred EEECcCCcCCCcChhHhhccccCCEEE
Confidence 999999998888888888888887765
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1e-23 Score=168.13 Aligned_cols=211 Identities=21% Similarity=0.177 Sum_probs=165.8
Q ss_pred EEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683 6 VLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN 85 (247)
Q Consensus 6 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 85 (247)
.++..+..++ .+|..+. +.+++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++++|
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 4555666666 4565554 57999999999999 455434444899999999999999777778999999999999999
Q ss_pred cccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccccc-CchhhhCCCCCCEEE
Q 044683 86 QLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGP-IPIEFCQLELLTILD 164 (247)
Q Consensus 86 ~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~ 164 (247)
.++ .++...+..+++|+.+++++|.++ +..+..+..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 87 ~l~-~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 87 PIQ-SLALGAFSGLSSLQKLVAVETNLA----------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp CCC-EECTTTTTTCTTCCEEECTTSCCC----------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred ccC-ccChhhhcCCccccEEECCCCCcc----------ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 998 566555566888887776666554 33455688899999999999999863 588999999999999
Q ss_pred ccCCcCcCCCCCCCC---CCC----eEeccCCcccccCCCcceeeeecchhcC-CCceEeccCCeeeecCCccccCCCch
Q 044683 165 LSNNTIFGTLPSCFR---TSS----FVKKQDRRTVGKPCGSLGLDILPHLFRR-RPRRLAVEGFDLVLELPQIVCGLPTC 236 (247)
Q Consensus 165 l~~n~l~~~~~~~~~---~~~----~L~l~~n~~~~~~~~~~~l~l~p~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L 236 (247)
+++|++++..+..+. ... .+++++|.+++..+.. +.. +|++|++++|++++..+..++.+++|
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~---------~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---------FKEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS---------SCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc---------cCCCcccEEECCCCceeecCHhHhcccccc
Confidence 999999977665553 222 7999999998754432 333 89999999999998777778888888
Q ss_pred hhhh
Q 044683 237 FALG 240 (247)
Q Consensus 237 ~~l~ 240 (247)
+.+.
T Consensus 227 ~~L~ 230 (276)
T 2z62_A 227 QKIW 230 (276)
T ss_dssp CEEE
T ss_pred cEEE
Confidence 8765
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=5.1e-24 Score=172.74 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=36.3
Q ss_pred CCCcEEEccCCceeecCCchhh-hhcccccEEEccCCccccCCh----HhhhcCCCCCEEeccCCcccccCchhHhhcCC
Q 044683 26 VLLRELYIDNNDLRGHIPVEIG-TYLLVFIHLNLSRNAFNGSIP----SSFFDMKMLKSLDISHNQLTGEIPERMATGCF 100 (247)
Q Consensus 26 ~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 100 (247)
+.|++|++++|.+++..|..++ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. .++...+..++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCC
Confidence 3355555555555444444431 224455555555555443222 22233445555555555554 33322233344
Q ss_pred CccEEEccCC
Q 044683 101 SLEILALSNN 110 (247)
Q Consensus 101 ~L~~l~l~~n 110 (247)
+|+.|++++|
T Consensus 170 ~L~~L~Ls~N 179 (310)
T 4glp_A 170 ALTSLDLSDN 179 (310)
T ss_dssp TCCEEECCSC
T ss_pred CCCEEECCCC
Confidence 4444444443
No 62
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=181.58 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=137.5
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
+++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|++++|.++...|.+|+.+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 35889999999998877888999999999999999988 45444444588999999999998877778888999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC-
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL- 160 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L- 160 (247)
+++|.++ .++...+..+++|++|++++|.++.+ .+|..+..+++|++|++++|.+++..+..+..+++|
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~---------~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSF---------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCC---------CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred ccccccc-cCCCccccccccccEEecCCCcccee---------cChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 9999888 66654455677888777666655422 357788888888999998888887767777777777
Q ss_pred ---CEEEccCCcCcCCCCCCCCCCC--eEeccCC
Q 044683 161 ---TILDLSNNTIFGTLPSCFRTSS--FVKKQDR 189 (247)
Q Consensus 161 ---~~L~l~~n~l~~~~~~~~~~~~--~L~l~~n 189 (247)
+.+++++|.+++..+..+...+ .+++++|
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred hhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 7888888888877776665433 6666665
No 63
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=5.6e-23 Score=161.75 Aligned_cols=211 Identities=20% Similarity=0.227 Sum_probs=157.6
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
..++++++++.++ .+|..+. +.++.|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcC-ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4678999999998 5666555 58999999999998 455544445899999999999999887888899999999999
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 162 (247)
++|.++ .++...+..+++|+.|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 159 (251)
T 3m19_A 91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK----------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159 (251)
T ss_dssp TTSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCccc-ccChhHhcccCCCCEEEcCCCcCC----------CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence 999998 777777667888887776666554 344566788999999999999999776678999999999
Q ss_pred EEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchhcC-CCceEeccCCeeeecCCcccc
Q 044683 163 LDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLFRR-RPRRLAVEGFDLVLELPQIVC 231 (247)
Q Consensus 163 L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~-~L~~L~l~~n~l~~~~~~~~~ 231 (247)
|++++|.+++..+..+.. ...|++++|++.+..+... -++.|+.. ..+..+..++.+.+..+...|
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C 229 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL---YLSQWIRENSNKVKDGTGQNLHESPDGVTC 229 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHH---HHHHHHHHSGGGBCC-------CCGGGCBB
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccH---HHHHHHHhcccceeeccCcccccCCCcCcc
Confidence 999999999777766653 3399999999987644321 14556555 444445566666554433333
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=9.5e-23 Score=163.75 Aligned_cols=196 Identities=21% Similarity=0.163 Sum_probs=139.8
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
++++++++++++.++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.++.. +.. +.+++|++|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLM-PYTRLTQLNLDRAELTKL-QVD-GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGT-TCTTCCEEECTTSCCCEE-ECC-SCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhh-cCCCCCEEECCCCccCcc-cCC-CCCCcCCEE
Confidence 457888899888888 4555554 5788899999988844344444 488899999999988843 332 678889999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 160 (247)
++++|.++ .+|..+ ..+++|+.|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 83 ~Ls~N~l~-~l~~~~-~~l~~L~~L~l~~N~l~----------~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 150 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLG-QTLPALTVLDVSFNRLT----------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150 (290)
T ss_dssp ECCSSCCS-SCCCCT-TTCTTCCEEECCSSCCC----------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ECCCCcCC-cCchhh-ccCCCCCEEECCCCcCc----------ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence 99999887 777644 34777776666655444 3445667778888888888888886666667788888
Q ss_pred CEEEccCCcCcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683 161 TILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL 224 (247)
Q Consensus 161 ~~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~ 224 (247)
+.|++++|++++..+..|. ....|++++|+++. + |.++.. .|+.+++++|.+..
T Consensus 151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-i---------p~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-I---------PKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-C---------CTTTTTTCCCSEEECCSCCBCC
T ss_pred CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-c---------ChhhcccccCCeEEeCCCCccC
Confidence 8888888888865555554 23388888888874 2 223333 78888888887753
No 65
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.8e-22 Score=171.91 Aligned_cols=174 Identities=17% Similarity=0.168 Sum_probs=110.3
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.+++. | .+..+++|++|++++|.++ .+| +. .+++|++|++++|.+++. + ++.+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~--~~-~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD--LS-QNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC--CT-TCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc--cc-cCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 5678888888888754 4 5777888888888888887 444 33 377788888888887743 3 67777888888
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCc-----------cEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSL-----------QGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI 150 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l-----------~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 150 (247)
+++|.++ .++ +..+++|+.+++++|.+ +.+++++|...+.+ .+..+++|++|++++|.+++ +
T Consensus 113 L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 113 CDTNKLT-KLD---VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CCSSCCS-CCC---CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCCcCC-eec---CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-e
Confidence 8888777 454 33467777777777643 35555555433333 35556666666666666664 2
Q ss_pred chhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccc
Q 044683 151 PIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVG 193 (247)
Q Consensus 151 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~ 193 (247)
+ +..+++|+.|++++|.+++..-..+.....|++++|++++
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC
T ss_pred c--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc
Confidence 3 4556666666666666654321222233366666666655
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.4e-22 Score=171.13 Aligned_cols=177 Identities=23% Similarity=0.189 Sum_probs=140.7
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++. + +..+++|++|++++|.++ .++ +. .+++|++|++++|.+++ ++ ++.+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--~~-~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--VT-PLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC--CT-TCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee--cC-CCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 46899999999999864 3 888999999999999998 454 44 48899999999999985 44 7889999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCC------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNN------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
++++|.++ .++ +..+++|+.+++++| .++.+++++|.+++ +| +..+++|+.|++++|.+++
T Consensus 133 ~l~~N~l~-~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 133 NCARNTLT-EID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp ECTTSCCS-CCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred ECCCCccc-eec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence 99999998 454 345888999999888 46688999998886 34 7778888999999998885
Q ss_pred cCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCC
Q 044683 149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCG 197 (247)
Q Consensus 149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~ 197 (247)
. .+..+++|++|++++|++++.....+.....|++++|++++..+.
T Consensus 206 ~---~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 206 L---DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp C---CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCT
T ss_pred e---ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHH
Confidence 4 367788888899998888864322223444888888888876543
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=4.8e-23 Score=164.00 Aligned_cols=181 Identities=24% Similarity=0.255 Sum_probs=152.1
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++. ..+..+++|++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|
T Consensus 62 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 57899999999999863 57899999999999999998 6666655559999999999999997777778999999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 160 (247)
++++|.++ .++...+..+++|+.|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 139 ~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 139 NLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ----------SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207 (272)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ECCCCccC-ccCHHHhccCccCCEEECCCCCcC----------ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCC
Confidence 99999998 777766666888887766666554 4456667889999999999999998777888999999
Q ss_pred CEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc
Q 044683 161 TILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL 199 (247)
Q Consensus 161 ~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~ 199 (247)
+.|++++|.+.+..| ....++++.|.++|.+|.++
T Consensus 208 ~~L~l~~N~~~~~~~----~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 208 QYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CEEECCSSCBCCCTT----TTHHHHHHHHHTGGGBBCTT
T ss_pred CEEEccCCCccccCc----HHHHHHHHHHhCCCcccCcc
Confidence 999999999986544 24478889999999877653
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=1.2e-23 Score=173.47 Aligned_cols=174 Identities=20% Similarity=0.224 Sum_probs=122.8
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
....+.+++.++ .+|..+. +++++|++++|.++ .++...+..+++|++|++++|.++...+.+|..+++|++|+++
T Consensus 33 ~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 33 NGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 445778888888 5666554 48999999999998 5666444559999999999999998778889999999999999
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCc-hhhhcccCcCeeeCcCC-cccccCchhhhCCCCCC
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP-RWLGNLLALEDIMMPNN-NLQGPIPIEFCQLELLT 161 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~ 161 (247)
+|.++ .++...+..+++|+.|++++|.++.+ .+ ..+..+++|++|++++| .+++..+..+..+++|+
T Consensus 109 ~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l----------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTL----------GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp SSCCS-SCCHHHHTTCTTCSEEECTTCCCSSS----------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCcCC-cCCHhHhCCCccCCEEECCCCCCccc----------CchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 99998 78888777789999888888755411 11 24455566666666665 34444445555666666
Q ss_pred EEEccCCcCcCCCCCCCCCCC---eEeccCCccc
Q 044683 162 ILDLSNNTIFGTLPSCFRTSS---FVKKQDRRTV 192 (247)
Q Consensus 162 ~L~l~~n~l~~~~~~~~~~~~---~L~l~~n~~~ 192 (247)
+|++++|.+++..|..+.... .|++++|.++
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 666666666555555554322 5556665553
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=3.3e-22 Score=170.79 Aligned_cols=225 Identities=24% Similarity=0.281 Sum_probs=126.2
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +. .+++|++|++++|.++.. +. +..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLTGLTLFNNQITDI-DP-LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC-GG-GTTCTTCSEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCCEEECCCCCCCCC-hH-HcCCCCCCEE
Confidence 4567888888888775433 777888888888888877 4444 43 377888888888887743 33 7777888888
Q ss_pred eccCCcccccCchh-------------------HhhcCCCccEEEccCC------------CccEEEccCCcCCCCCchh
Q 044683 81 DISHNQLTGEIPER-------------------MATGCFSLEILALSNN------------SLQGLYLSDNRLFGRIPRW 129 (247)
Q Consensus 81 ~l~~n~~~~~~~~~-------------------~~~~~~~L~~l~l~~n------------~l~~l~l~~n~~~~~~~~~ 129 (247)
++++|.+. .++.. .+..+++|+.+++++| .++.+++++|.+.+..+
T Consensus 140 ~l~~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 140 ELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred ECCCCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc--
Confidence 88887776 44320 0122444555555554 23355555555554333
Q ss_pred hhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCC-CCCCCCCeEeccCCcccccCCCcc-----eeee
Q 044683 130 LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP-SCFRTSSFVKKQDRRTVGKPCGSL-----GLDI 203 (247)
Q Consensus 130 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~l~~n~~~~~~~~~~-----~l~l 203 (247)
+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+ ..+.....|++++|.+++..+... .+++
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L 294 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 294 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEc
Confidence 44455555555555555422 234555566666666665554332 011122255666665554322100 1222
Q ss_pred -------ecchhcC--CCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 204 -------LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 204 -------~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
++. +.. +|+.|++++|++++..| +..+++|+.+.
T Consensus 295 ~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 295 NENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 222 222 67777777777766444 55555555543
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=6.5e-23 Score=160.19 Aligned_cols=190 Identities=17% Similarity=0.139 Sum_probs=110.0
Q ss_pred CCcEEEccCCceeecCCchhhhhcccccEEEccCCc-cccCChHhhhcCCCCCEEeccC-CcccccCchhHhhcCCCccE
Q 044683 27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA-FNGSIPSSFFDMKMLKSLDISH-NQLTGEIPERMATGCFSLEI 104 (247)
Q Consensus 27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~ 104 (247)
.+++|++++|.++ .++...+..+++|++|++++|. ++...+.+|..+++|++|++++ |.++ .++...+..+++|+.
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 6677777777776 4444434446677777777775 6644455666677777777776 6666 555555555666665
Q ss_pred EEccCCCccEEEccCCcCCCCCchhhhcccCcC---eeeCcCC-cccccCchhhhCCCCCC-EEEccCCcCcCCCCCCCC
Q 044683 105 LALSNNSLQGLYLSDNRLFGRIPRWLGNLLALE---DIMMPNN-NLQGPIPIEFCQLELLT-ILDLSNNTIFGTLPSCFR 179 (247)
Q Consensus 105 l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~---~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~ 179 (247)
+++++|.++. +|. +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|.++...+..+.
T Consensus 110 L~l~~n~l~~-----------lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 110 LGIFNTGLKM-----------FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp EEEEEECCCS-----------CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred EeCCCCCCcc-----------ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 5555554432 233 45555555 7777777 66655555566677777 777777777644444444
Q ss_pred CCC--eEeccCCc-ccccCCCcceeeeecchhcCCCceEeccCCeeeecCCccccCCCch
Q 044683 180 TSS--FVKKQDRR-TVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVLELPQIVCGLPTC 236 (247)
Q Consensus 180 ~~~--~L~l~~n~-~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 236 (247)
..+ .|++++|+ +++..+..+ . .+..+|+.|++++|++++..+..+.+++.|
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~-----~-~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L 231 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAF-----G-GVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTT-----T-TCSBCCSEEECTTCCCCCCCCTTCTTCSEE
T ss_pred CCCCCEEEcCCCCCcccCCHHHh-----h-ccccCCcEEECCCCccccCChhHhccCcee
Confidence 322 66777774 654333221 0 000167777777777775444444444443
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=9.1e-22 Score=168.06 Aligned_cols=119 Identities=19% Similarity=0.214 Sum_probs=57.9
Q ss_pred EEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCC-CCCCCCCeEeccCCccc
Q 044683 114 GLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLP-SCFRTSSFVKKQDRRTV 192 (247)
Q Consensus 114 ~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~l~~n~~~ 192 (247)
.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ ..+.....|++++|.++
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCS
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCC
Confidence 45555555543322 4455555555555555553322 4555555555555555553322 11122235666666655
Q ss_pred ccCCCcc-----eeee-------ecchhcC--CCceEeccCCeeeecCCccccCCCchhhh
Q 044683 193 GKPCGSL-----GLDI-------LPHLFRR--RPRRLAVEGFDLVLELPQIVCGLPTCFAL 239 (247)
Q Consensus 193 ~~~~~~~-----~l~l-------~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 239 (247)
+..|... .+++ ++ .+.. +|+.|++++|++++..| +..+++|+.+
T Consensus 323 ~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 323 DISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 5433111 1222 21 2333 66677777776666544 5555555544
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.6e-23 Score=176.92 Aligned_cols=207 Identities=19% Similarity=0.136 Sum_probs=160.9
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. .++|++|++++|.+++..+. .+++|++|
T Consensus 57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L 125 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNI 125 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEE
T ss_pred CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEE
Confidence 4689999999999987655 899999999999999998 4443 37899999999999865443 46899999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhh-cccCcCeeeCcCCcccccCchhhhCCCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLG-NLLALEDIMMPNNNLQGPIPIEFCQLEL 159 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 159 (247)
++++|.+++..|.. +..+++|+.|++++|.++ +..|..+. .+++|++|++++|.+++. + ....+++
T Consensus 126 ~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~----------~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~ 192 (487)
T 3oja_A 126 YLANNKITMLRDLD-EGCRSRVQYLDLKLNEID----------TVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAK 192 (487)
T ss_dssp ECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCC----------EEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTT
T ss_pred ECCCCCCCCCCchh-hcCCCCCCEEECCCCCCC----------CcChHHHhhhCCcccEEecCCCccccc-c-ccccCCC
Confidence 99999998444443 344777776666666555 44566665 789999999999999965 3 2346999
Q ss_pred CCEEEccCCcCcCCCCCCCC--CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeee-ecCCccccCCC
Q 044683 160 LTILDLSNNTIFGTLPSCFR--TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLV-LELPQIVCGLP 234 (247)
Q Consensus 160 L~~L~l~~n~l~~~~~~~~~--~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~-~~~~~~~~~l~ 234 (247)
|+.|++++|.+++.++.... ....|++++|.+++. |.++.. +|+.|++++|.+. +.+|..+..++
T Consensus 193 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~l----------p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI----------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp CCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE----------CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred CCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCccc----------chhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 99999999999976665222 344999999999962 333444 8999999999998 56777788888
Q ss_pred chhhhhc
Q 044683 235 TCFALGK 241 (247)
Q Consensus 235 ~L~~l~~ 241 (247)
.+..+..
T Consensus 263 ~L~~l~~ 269 (487)
T 3oja_A 263 RVQTVAK 269 (487)
T ss_dssp HHHHHHH
T ss_pred CCcEEec
Confidence 7776653
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.1e-22 Score=159.04 Aligned_cols=177 Identities=27% Similarity=0.281 Sum_probs=148.1
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
+.++.|++++|.+++..+..|..+++|++|++++|.++ .++.. ..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 46899999999999888899999999999999999998 55544 34889999999999998 6788889999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 161 (247)
+++|.++ .++...+..+++|+.|++++|.++ +..+..+..+++|+.|++++|++++..+..+..+++|+
T Consensus 107 l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 107 VSFNRLT-SLPLGALRGLGELQELYLKGNELK----------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (290)
T ss_dssp CCSSCCC-CCCSSTTTTCTTCCEEECTTSCCC----------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred CCCCcCc-ccCHHHHcCCCCCCEEECCCCCCC----------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCC
Confidence 9999999 777666667888887776666554 44566678899999999999999966667778899999
Q ss_pred EEEccCCcCcCCCCCCCCC--CCeEeccCCcccc
Q 044683 162 ILDLSNNTIFGTLPSCFRT--SSFVKKQDRRTVG 193 (247)
Q Consensus 162 ~L~l~~n~l~~~~~~~~~~--~~~L~l~~n~~~~ 193 (247)
.|++++|.++..+...+.. ...+++++|.+.-
T Consensus 176 ~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 176 TLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 9999999999544444443 3399999999864
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=6e-23 Score=169.95 Aligned_cols=222 Identities=17% Similarity=0.142 Sum_probs=152.2
Q ss_pred CCCcEEEccCCccccccC----ccccCCC-CCcEEEccCCceeecCCchhhhh----cccccEEEccCCccccCChHhhh
Q 044683 2 TSLKVLDASSNQLTGNIS----PNLCELV-LLRELYIDNNDLRGHIPVEIGTY----LLVFIHLNLSRNAFNGSIPSSFF 72 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~~ 72 (247)
++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+... .++|++|++++|.++...+..++
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 358999999999987666 6777888 89999999999986556555552 27899999999999876666544
Q ss_pred c----C-CCCCEEeccCCcccccCchhHhh---c-CCCccEEEccCCC-------------------ccEEEccCCcCCC
Q 044683 73 D----M-KMLKSLDISHNQLTGEIPERMAT---G-CFSLEILALSNNS-------------------LQGLYLSDNRLFG 124 (247)
Q Consensus 73 ~----l-~~L~~L~l~~n~~~~~~~~~~~~---~-~~~L~~l~l~~n~-------------------l~~l~l~~n~~~~ 124 (247)
. . ++|++|++++|.+++..+..+.. . ..+|+.|++++|. ++.|++++|++++
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 4 3 78999999999988433333322 2 2588999888773 4477888888876
Q ss_pred CCchhhhc----c-cCcCeeeCcCCccccc----CchhhhC-CCCCCEEEccCCcCcCCCC-------CCCCCCCeEecc
Q 044683 125 RIPRWLGN----L-LALEDIMMPNNNLQGP----IPIEFCQ-LELLTILDLSNNTIFGTLP-------SCFRTSSFVKKQ 187 (247)
Q Consensus 125 ~~~~~~~~----~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L~~L~l~~n~l~~~~~-------~~~~~~~~L~l~ 187 (247)
..+..+.. . ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+ ........|+++
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 66654433 3 5788888888888752 3445554 4588888888888875433 122234478888
Q ss_pred CCcccccCCCcceeeeecchhcC--CCceEeccCCeeeec
Q 044683 188 DRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLE 225 (247)
Q Consensus 188 ~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~ 225 (247)
+|.+.+..+.. +..++..+.. +|+.||+++|++.+.
T Consensus 262 ~n~l~~i~~~~--~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 262 YDIVKNMSKEQ--CKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTCCHHH--HHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCccccCHHH--HHHHHHHhccCCceEEEecCCCcCCCc
Confidence 88755332211 1113333444 688999999988765
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=1.6e-21 Score=157.97 Aligned_cols=188 Identities=19% Similarity=0.250 Sum_probs=142.8
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +. .+++|++|++++|.++. ++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~-~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LK-NLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-Hc-cCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 578999999999884 44 6888999999999999998 6666 44 48999999999999984 44 688999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 161 (247)
+++|.++ .++. +..+++|+.|++++|.++ +. +. +..+++|++|++++|.+++. +. +..+++|+
T Consensus 114 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~----------~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~ 176 (308)
T 1h6u_A 114 LTSTQIT-DVTP--LAGLSNLQVLYLDLNQIT----------NI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLT 176 (308)
T ss_dssp CTTSCCC-CCGG--GTTCTTCCEEECCSSCCC----------CC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCC
T ss_pred CCCCCCC-Cchh--hcCCCCCCEEECCCCccC----------cC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCC
Confidence 9999998 5654 456888887777776554 22 22 67788888888888888743 33 77888888
Q ss_pred EEEccCCcCcCCCC-CCCCCCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeee
Q 044683 162 ILDLSNNTIFGTLP-SCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVL 224 (247)
Q Consensus 162 ~L~l~~n~l~~~~~-~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~ 224 (247)
+|++++|.+++..+ ..+.....|++++|++++..+ +.. +|+.|++++|.+++
T Consensus 177 ~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-----------l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----------LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-----------GTTCTTCCEEEEEEEEEEC
T ss_pred EEECCCCccCcChhhcCCCCCCEEEccCCccCcccc-----------ccCCCCCCEEEccCCeeec
Confidence 88888888875443 112234488888888876432 233 78888888888875
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.5e-21 Score=153.64 Aligned_cols=160 Identities=23% Similarity=0.217 Sum_probs=138.3
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
+.++.|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|+
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 113 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEE
Confidence 46899999999999888889999999999999999999 55555555599999999999999977777889999999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 161 (247)
+++|.++ .++...+..+++|+.|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 114 L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 114 LGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ----------SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCCCcCC-CcChhHhccCCcccEEECcCCcCC----------ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 9999998 788777666888887766666554 44456788999999999999999977777899999999
Q ss_pred EEEccCCcCcCC
Q 044683 162 ILDLSNNTIFGT 173 (247)
Q Consensus 162 ~L~l~~n~l~~~ 173 (247)
.|++++|.++..
T Consensus 183 ~L~l~~N~~~c~ 194 (251)
T 3m19_A 183 TITLFGNQFDCS 194 (251)
T ss_dssp EEECCSCCBCTT
T ss_pred EEEeeCCceeCC
Confidence 999999999855
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.8e-22 Score=156.52 Aligned_cols=195 Identities=16% Similarity=0.185 Sum_probs=155.3
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCc-eeecCCchhhhhcccccEEEccC-CccccCChHhhhcCCCCCE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNND-LRGHIPVEIGTYLLVFIHLNLSR-NAFNGSIPSSFFDMKMLKS 79 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~ 79 (247)
+++++|++++|.+++..+..|..+++|++|++++|. ++ .++...+..+++|++|++++ |.++...+..|..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 368999999999998777789999999999999997 87 67765555699999999998 9999776778999999999
Q ss_pred EeccCCcccccCchhHhhcCCCcc---EEEccCC-CccEEEccCCcCCCCCchhhhcccCcC-eeeCcCCcccccCchhh
Q 044683 80 LDISHNQLTGEIPERMATGCFSLE---ILALSNN-SLQGLYLSDNRLFGRIPRWLGNLLALE-DIMMPNNNLQGPIPIEF 154 (247)
Q Consensus 80 L~l~~n~~~~~~~~~~~~~~~~L~---~l~l~~n-~l~~l~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l 154 (247)
|++++|.++ .+|. +..+++|+ .+++++| .+ ++..+..+..+++|+ ++++++|.++...+..+
T Consensus 110 L~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l----------~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~ 176 (239)
T 2xwt_C 110 LGIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYM----------TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF 176 (239)
T ss_dssp EEEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTC----------CEECTTTTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred EeCCCCCCc-cccc--cccccccccccEEECCCCcch----------hhcCcccccchhcceeEEEcCCCCCcccCHhhc
Confidence 999999998 6776 45577777 5555555 44 444456688899999 99999999994444444
Q ss_pred hCCCCCCEEEccCCc-CcCCCCCCCCCC----CeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCe
Q 044683 155 CQLELLTILDLSNNT-IFGTLPSCFRTS----SFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFD 221 (247)
Q Consensus 155 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~ 221 (247)
.. ++|+.|++++|+ +++..+..|... ..|++++|++++..+.. +. +++.|+++++.
T Consensus 177 ~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~---------~~-~L~~L~l~~~~ 237 (239)
T 2xwt_C 177 NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG---------LE-HLKELIARNTW 237 (239)
T ss_dssp TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTT---------CT-TCSEEECTTC-
T ss_pred CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhH---------hc-cCceeeccCcc
Confidence 44 899999999995 987767777543 39999999998643321 22 89999998873
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=3.7e-21 Score=163.65 Aligned_cols=77 Identities=23% Similarity=0.380 Sum_probs=46.9
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.. ..+|++|++++|.+++ +| .++.+++|++|++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 56677777777764 44 4677777777777777776 45543 2356666666666653 34 3555555555555
Q ss_pred cCCccc
Q 044683 83 SHNQLT 88 (247)
Q Consensus 83 ~~n~~~ 88 (247)
++|.++
T Consensus 203 ~~N~l~ 208 (454)
T 1jl5_A 203 DNNSLK 208 (454)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 555554
No 79
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=9e-22 Score=150.49 Aligned_cols=158 Identities=20% Similarity=0.140 Sum_probs=69.7
Q ss_pred cccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhh
Q 044683 52 VFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLG 131 (247)
Q Consensus 52 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~ 131 (247)
++++|++++|.++...+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.++ +..+..+.
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~~~~~ 97 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ----------SLPNGVFD 97 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTT
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCC----------ccCHhHhc
Confidence 4444444444444333333444444444444444444 333333333444443333333222 12223334
Q ss_pred cccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEeccCCcccccCCCcceeeeecchh
Q 044683 132 NLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVKKQDRRTVGKPCGSLGLDILPHLF 208 (247)
Q Consensus 132 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~l~~n~~~~~~~~~~~l~l~p~~~ 208 (247)
.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ...|++++|.+.+..+
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------------ 165 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------------ 165 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT------------
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC------------
Confidence 4444555555555554333333444555555555555554333333321 1145555555444333
Q ss_pred cCCCceEeccCCeeeecCCccccCCC
Q 044683 209 RRRPRRLAVEGFDLVLELPQIVCGLP 234 (247)
Q Consensus 209 ~~~L~~L~l~~n~l~~~~~~~~~~l~ 234 (247)
.++.|+++.|+++|.+|+.++.++
T Consensus 166 --~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 166 --GIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp --TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred --CHHHHHHHHHhCCceeeccCcccc
Confidence 355555555555555555555443
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=5.7e-23 Score=171.44 Aligned_cols=221 Identities=15% Similarity=0.109 Sum_probs=158.5
Q ss_pred CCCCcEEEccCCccccccC----ccccCCCCCcEEEccCCc---eeecCCchhh------hhcccccEEEccCCcccc--
Q 044683 1 MTSLKVLDASSNQLTGNIS----PNLCELVLLRELYIDNND---LRGHIPVEIG------TYLLVFIHLNLSRNAFNG-- 65 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~---i~~~~~~~~~------~~l~~L~~L~l~~n~l~~-- 65 (247)
+++|++|++++|.++...+ ..+..+++|++|++++|. +++.+|..+. ..+++|++|++++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4679999999999987644 346689999999999964 4445565552 337899999999999986
Q ss_pred --CChHhhhcCCCCCEEeccCCcccccCchhHhh---cC---------CCccEEEccCCCc------------------c
Q 044683 66 --SIPSSFFDMKMLKSLDISHNQLTGEIPERMAT---GC---------FSLEILALSNNSL------------------Q 113 (247)
Q Consensus 66 --~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~---------~~L~~l~l~~n~l------------------~ 113 (247)
.+|..+..+++|++|++++|.+++..+..+.. .+ ++|+.|++++|.+ +
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 36778889999999999999986333332222 13 7899999988844 4
Q ss_pred EEEccCCcCCC-----CCchhhhcccCcCeeeCcCCccc----ccCchhhhCCCCCCEEEccCCcCcCC----CCCC---
Q 044683 114 GLYLSDNRLFG-----RIPRWLGNLLALEDIMMPNNNLQ----GPIPIEFCQLELLTILDLSNNTIFGT----LPSC--- 177 (247)
Q Consensus 114 ~l~l~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~~~----~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~--- 177 (247)
.|++++|+++. ..+..+..+++|++|++++|.++ ..++..+..+++|+.|++++|.+++. ++..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 78888888763 23336777888888888888885 45677778888888888888888754 2333
Q ss_pred --CCCCCeEeccCCcccccCCCcceeeeecchh-cC--CCceEeccCCeeeecC
Q 044683 178 --FRTSSFVKKQDRRTVGKPCGSLGLDILPHLF-RR--RPRRLAVEGFDLVLEL 226 (247)
Q Consensus 178 --~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~-~~--~L~~L~l~~n~l~~~~ 226 (247)
......|++++|.+++.. +..+|.++ .. +|++|++++|.+++..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g-----~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDA-----VRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHH-----HHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ccCCCeEEEECcCCcCCHHH-----HHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 233448888888887620 00133333 22 8888888888888654
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=1.1e-20 Score=166.00 Aligned_cols=212 Identities=25% Similarity=0.235 Sum_probs=102.8
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
++.|++++|.++ .+|..+. ++|+.|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 455566666555 4444333 45555555555555 4444 1445555555555555 2333 34555555555
Q ss_pred CCcccccCchhH----------------hhcCCCccEEEccCCCc----------cEEEccCCcCCCCCchhhhcccCcC
Q 044683 84 HNQLTGEIPERM----------------ATGCFSLEILALSNNSL----------QGLYLSDNRLFGRIPRWLGNLLALE 137 (247)
Q Consensus 84 ~n~~~~~~~~~~----------------~~~~~~L~~l~l~~n~l----------~~l~l~~n~~~~~~~~~~~~~~~L~ 137 (247)
+|.++ .+|... ...+++|+.|++++|.+ +.|++++|.+++ +| ..+++|+
T Consensus 110 ~N~l~-~l~~~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~---~~~~~L~ 184 (622)
T 3g06_A 110 SNPLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LP---MLPSGLQ 184 (622)
T ss_dssp SCCCC-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC---CCCTTCC
T ss_pred CCcCC-CCCCCCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Cc---ccCCCCc
Confidence 55554 333300 00123444444444422 233444444432 22 2236677
Q ss_pred eeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc----eeee-------ecc
Q 044683 138 DIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL----GLDI-------LPH 206 (247)
Q Consensus 138 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~----~l~l-------~p~ 206 (247)
.|++++|.+++ +|.. .++|+.|++++|.++ .+|..+.....|++++|.+++. |... .|++ +|.
T Consensus 185 ~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~l-p~~l~~L~~L~Ls~N~L~~lp~ 258 (622)
T 3g06_A 185 ELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSL-PVLPSELKELMVSGNRLTSLPM 258 (622)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCC
T ss_pred EEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCcC-CCCCCcCcEEECCCCCCCcCCc
Confidence 77777777663 3322 234444444444444 2222223333555555555431 1111 2222 333
Q ss_pred hhcCCCceEeccCCeeeecCCccccCCCchhhhh
Q 044683 207 LFRRRPRRLAVEGFDLVLELPQIVCGLPTCFALG 240 (247)
Q Consensus 207 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 240 (247)
.+. +|+.|++++|+++ .+|..++++++|+.++
T Consensus 259 ~~~-~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 259 LPS-GLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp CCT-TCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred ccc-cCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 111 7888888888877 5677777777776654
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=5.1e-22 Score=160.95 Aligned_cols=204 Identities=16% Similarity=0.149 Sum_probs=142.0
Q ss_pred CCCcEEEccCCccccccCccc--cCCCCCcEEEccCCceeecCC----chhhhhcccccEEEccCCccccCChHhhhcCC
Q 044683 2 TSLKVLDASSNQLTGNISPNL--CELVLLRELYIDNNDLRGHIP----VEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMK 75 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 75 (247)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+. .+++|++|++++|.++...+..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCC
Confidence 458889999998888888777 788889999999998885444 2223 377889999999988877777888888
Q ss_pred CCCEEeccCCccccc--CchhH-hhcCCCccEEEccCCCccEEEccCCcCCCCCch-hhhcccCcCeeeCcCCcccccCc
Q 044683 76 MLKSLDISHNQLTGE--IPERM-ATGCFSLEILALSNNSLQGLYLSDNRLFGRIPR-WLGNLLALEDIMMPNNNLQGPIP 151 (247)
Q Consensus 76 ~L~~L~l~~n~~~~~--~~~~~-~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~ 151 (247)
+|++|++++|.+.+. ++... ...+++|+.|++++|.++.+. ..+. .+..+++|++|++++|.+++..|
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT--------GVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH--------HHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH--------HHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 999999999886532 22111 134566665555555543210 1112 24677888999999998887667
Q ss_pred hhhhCC---CCCCEEEccCCcCcCCCCCCC-CCCCeEeccCCcccccCCCcceeeeecchhcCCCceEeccCCeeee
Q 044683 152 IEFCQL---ELLTILDLSNNTIFGTLPSCF-RTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRRLAVEGFDLVL 224 (247)
Q Consensus 152 ~~l~~~---~~L~~L~l~~n~l~~~~~~~~-~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~L~l~~n~l~~ 224 (247)
..+..+ ++|++|++++|+++ .+|..+ .....|++++|++++. |. +..+. +|+.|++++|+++.
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~l~~~-~~-------~~~l~-~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNRLNRA-PQ-------PDELP-EVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCCCCSC-CC-------TTSCC-CCSCEECSSTTTSC
T ss_pred hhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCcCCCC-ch-------hhhCC-CccEEECcCCCCCC
Confidence 666665 68889999999888 445444 3455888888888863 11 11111 78888888888764
No 83
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=1.4e-20 Score=160.12 Aligned_cols=211 Identities=27% Similarity=0.346 Sum_probs=94.2
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.. .++|++|++++|.++ .+| .++.+++|++|++
T Consensus 174 ~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l 244 (454)
T 1jl5_A 174 SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYA 244 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEEC
T ss_pred cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEEC
Confidence 34455555555543 23 3555566666666666555 34432 235666666666665 444 3666666777777
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCC----------ccEEEccCCcCCC--CCchhh-------------hcc-cCc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNS----------LQGLYLSDNRLFG--RIPRWL-------------GNL-LAL 136 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~----------l~~l~l~~n~~~~--~~~~~~-------------~~~-~~L 136 (247)
++|.++ .+|. ..++|+.+++++|. ++.+++++|.+++ .+|..+ ..+ ++|
T Consensus 245 ~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L 319 (454)
T 1jl5_A 245 DNNLLK-TLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 319 (454)
T ss_dssp CSSCCS-SCCS----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred CCCcCC-cccc----cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcC
Confidence 776666 4443 13455666655553 3345555555554 122111 111 355
Q ss_pred CeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccc--cCCCcc-eeee------ecch
Q 044683 137 EDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVG--KPCGSL-GLDI------LPHL 207 (247)
Q Consensus 137 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~--~~~~~~-~l~l------~p~~ 207 (247)
++|++++|++++ +|.. +++|++|++++|.+++ +|..+.....|++++|++++ .+|.++ .+.. +|..
T Consensus 320 ~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 320 EELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------
T ss_pred CEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccc
Confidence 566666666553 3322 4566666666666663 33333344467777777766 444443 1211 2221
Q ss_pred hcCCCceEeccCCeeee--cCCccccCC
Q 044683 208 FRRRPRRLAVEGFDLVL--ELPQIVCGL 233 (247)
Q Consensus 208 ~~~~L~~L~l~~n~l~~--~~~~~~~~l 233 (247)
+. +|+.|++++|++++ .+|.++..+
T Consensus 395 ~~-~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 395 PQ-NLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp ----------------------------
T ss_pred cC-cCCEEECCCCcCCccccchhhHhhe
Confidence 11 67777777777776 556555444
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.3e-21 Score=160.11 Aligned_cols=220 Identities=14% Similarity=0.114 Sum_probs=151.0
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeec-CCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGH-IPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+.++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+. .+++|++|++++|.++...+..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILS-QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHT-TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHh-hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4678888888888865554 55788899999999888754 554444 48889999999988887777888888899999
Q ss_pred eccCC-cccccCchhHhhcCCCccEEEccCC-----------------CccEEEccCC--cCC-CCCchhhhcccCcCee
Q 044683 81 DISHN-QLTGEIPERMATGCFSLEILALSNN-----------------SLQGLYLSDN--RLF-GRIPRWLGNLLALEDI 139 (247)
Q Consensus 81 ~l~~n-~~~~~~~~~~~~~~~~L~~l~l~~n-----------------~l~~l~l~~n--~~~-~~~~~~~~~~~~L~~L 139 (247)
++++| .+++......+..+++|+.|++++| .++.|++++| .++ +.++..+..+++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 99888 5663222233445888888888887 5567777777 444 3455666777888888
Q ss_pred eCcCCc-ccccCchhhhCCCCCCEEEccCCc-CcCCCCCCC---CCCCeEeccCCcccccCCCcceeeeecchhcCCCce
Q 044683 140 MMPNNN-LQGPIPIEFCQLELLTILDLSNNT-IFGTLPSCF---RTSSFVKKQDRRTVGKPCGSLGLDILPHLFRRRPRR 214 (247)
Q Consensus 140 ~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~---~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~~L~~ 214 (247)
++++|. +++..+..+..+++|++|++++|. ++......+ .....|++++| ++... +. .+...+..
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~--------~~-~l~~~l~~ 297 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT--------LQ-LLKEALPH 297 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC--------HH-HHHHHSTT
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHH--------HH-HHHhhCcc
Confidence 888887 665666677778888888888874 322111122 23337788877 33211 00 01115788
Q ss_pred EeccCCeeeecCCccccCC
Q 044683 215 LAVEGFDLVLELPQIVCGL 233 (247)
Q Consensus 215 L~l~~n~l~~~~~~~~~~l 233 (247)
|++++|++++..|..+++-
T Consensus 298 L~l~~n~l~~~~~~~~~~~ 316 (336)
T 2ast_B 298 LQINCSHFTTIARPTIGNK 316 (336)
T ss_dssp SEESCCCSCCTTCSSCSST
T ss_pred eEEecccCccccCCccccc
Confidence 8899999998888877653
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=8.2e-22 Score=163.11 Aligned_cols=230 Identities=17% Similarity=0.097 Sum_probs=158.1
Q ss_pred EEEccCCccccccCccccCCCCCcEEEccCCceeecCCc---hhhhhcc-cccEEEccCCccccCChHhhhcC-----CC
Q 044683 6 VLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPV---EIGTYLL-VFIHLNLSRNAFNGSIPSSFFDM-----KM 76 (247)
Q Consensus 6 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~---~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 76 (247)
.+.+++|.+++.+|..+...+.|++|++++|.+++..+. ..+..++ +|++|++++|.++...+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 468899999988887777777799999999999843331 2333366 89999999999998778888775 99
Q ss_pred CCEEeccCCcccccCchhHhh---cC-CCccEEEccCCC-------------------ccEEEccCCcCCCCCch----h
Q 044683 77 LKSLDISHNQLTGEIPERMAT---GC-FSLEILALSNNS-------------------LQGLYLSDNRLFGRIPR----W 129 (247)
Q Consensus 77 L~~L~l~~n~~~~~~~~~~~~---~~-~~L~~l~l~~n~-------------------l~~l~l~~n~~~~~~~~----~ 129 (247)
|++|++++|.+++..+..+.. .. ++|+.|++++|. ++.|++++|.+++..+. .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998554443332 23 789999998873 45788888887754433 3
Q ss_pred hhccc-CcCeeeCcCCcccccCch----hhhCC-CCCCEEEccCCcCcCC----CCCCC----CCCCeEeccCCcccccC
Q 044683 130 LGNLL-ALEDIMMPNNNLQGPIPI----EFCQL-ELLTILDLSNNTIFGT----LPSCF----RTSSFVKKQDRRTVGKP 195 (247)
Q Consensus 130 ~~~~~-~L~~L~l~~n~~~~~~~~----~l~~~-~~L~~L~l~~n~l~~~----~~~~~----~~~~~L~l~~n~~~~~~ 195 (247)
+...+ +|++|++++|.+++..+. .+..+ ++|++|++++|.+++. ++..+ .....|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 34444 788888888888765543 33444 5888888888888753 22222 13348888888877643
Q ss_pred CCcceeeeecchhcC--CCceEeccCCeeeec-------CCccccCCCchhhhh
Q 044683 196 CGSLGLDILPHLFRR--RPRRLAVEGFDLVLE-------LPQIVCGLPTCFALG 240 (247)
Q Consensus 196 ~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~l~ 240 (247)
+.. ++..+.. +|+.|++++|.+.+. ++..+..+++|+.++
T Consensus 242 ~~~-----l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~Ld 290 (362)
T 3goz_A 242 LEN-----LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290 (362)
T ss_dssp HHH-----HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEEC
T ss_pred HHH-----HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEe
Confidence 321 1222233 788888888874432 233455666666554
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.4e-20 Score=165.20 Aligned_cols=199 Identities=27% Similarity=0.279 Sum_probs=108.5
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|++++|.++. +|.. +++|++|+
T Consensus 81 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~ 147 (622)
T 3g06_A 81 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELS 147 (622)
T ss_dssp TTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEE
T ss_pred CCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEE
Confidence 345555555555542 332 3455555555555555 4444 14455666666665552 3332 36777777
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCC----------ccEEEccCCcCCCCCchhh-----------------hccc
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNS----------LQGLYLSDNRLFGRIPRWL-----------------GNLL 134 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~----------l~~l~l~~n~~~~~~~~~~-----------------~~~~ 134 (247)
+++|.++ .+|. ..++|+.|++++|. ++.|++++|.+++ +|..+ ..++
T Consensus 148 Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~ 221 (622)
T 3g06_A 148 VSDNQLA-SLPA----LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPS 221 (622)
T ss_dssp CCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCT
T ss_pred CcCCcCC-CcCC----ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCC
Confidence 7777776 4543 23455566555542 3355555555553 22211 0124
Q ss_pred CcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcceeeeecchhcC--CC
Q 044683 135 ALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RP 212 (247)
Q Consensus 135 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L 212 (247)
+|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|..+.....|++++|.++ . +|.++.. +|
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls~N~L~-~---------lp~~l~~l~~L 286 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-R---------LPESLIHLSSE 286 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCC-S---------CCGGGGGSCTT
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCcccccCcEEeCCCCCCC-c---------CCHHHhhcccc
Confidence 45555555555553 23 23455555555555555 23333333445555555555 2 5556666 99
Q ss_pred ceEeccCCeeeecCCccccCCC
Q 044683 213 RRLAVEGFDLVLELPQIVCGLP 234 (247)
Q Consensus 213 ~~L~l~~n~l~~~~~~~~~~l~ 234 (247)
+.|++++|.+++..|..+..++
T Consensus 287 ~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 287 TTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CEEECCSCCCCHHHHHHHHHHH
T ss_pred CEEEecCCCCCCcCHHHHHhcc
Confidence 9999999999988877665443
No 87
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.3e-20 Score=144.03 Aligned_cols=176 Identities=22% Similarity=0.236 Sum_probs=141.7
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH 84 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 84 (247)
+.++.+++.++ .+|..+ .+++++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 56788888887 445444 358999999999998 67776666689999999999999966666788999999999999
Q ss_pred CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEE
Q 044683 85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164 (247)
Q Consensus 85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 164 (247)
|.++ .++...+..+++|+.+++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 86 NQLQ-SLPNGVFDKLTQLKELALNTNQLQ----------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCC-ccCHhHhcCccCCCEEEcCCCcCc----------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 9998 777776666888887776666554 34456678899999999999999976667788999999999
Q ss_pred ccCCcCcCCCCCCCCCCCeEeccCCcccccCCCcc
Q 044683 165 LSNNTIFGTLPSCFRTSSFVKKQDRRTVGKPCGSL 199 (247)
Q Consensus 165 l~~n~l~~~~~~~~~~~~~L~l~~n~~~~~~~~~~ 199 (247)
+++|.+.+..+ ....|+++.|.++|.+|.++
T Consensus 155 l~~N~~~~~~~----~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 155 LHDNPWDCTCP----GIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp CCSCCBCCCTT----TTHHHHHHHHHCTTTBBCTT
T ss_pred ecCCCeecCCC----CHHHHHHHHHhCCceeeccC
Confidence 99998875543 34578899999999877543
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=8.6e-21 Score=164.84 Aligned_cols=186 Identities=26% Similarity=0.313 Sum_probs=144.5
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| . .+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip-~---~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP-E---LPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC-C---CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc-c---ccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 68999999999986 666553 78999999999998 888 2 26799999999999985 666 544 8999999
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCE
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTI 162 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 162 (247)
++|.++ .+|. .+++|+.|++++|.++ + +|. .+++|++|++++|.+++ +|. +. ++|+.
T Consensus 128 s~N~l~-~lp~----~l~~L~~L~Ls~N~l~----------~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~ 184 (571)
T 3cvr_A 128 DNNQLT-MLPE----LPALLEYINADNNQLT----------M-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA 184 (571)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCS----------C-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred CCCcCC-CCCC----cCccccEEeCCCCccC----------c-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence 999998 5776 3677777776666554 2 343 46789999999999985 565 55 89999
Q ss_pred EEccCCcCcCCCCCCCCCC-------CeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCC
Q 044683 163 LDLSNNTIFGTLPSCFRTS-------SFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGL 233 (247)
Q Consensus 163 L~l~~n~l~~~~~~~~~~~-------~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l 233 (247)
|++++|.|+ .+|...... ..|++++|.++. +|.++.. +|+.|++++|.+++.+|..++.+
T Consensus 185 L~Ls~N~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~~----------lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH----------IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp EECCSSCCS-SCCCCC--------CCEEEECCSSCCCC----------CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred EECcCCCCC-chhhHHHhhhcccccceEEecCCCccee----------cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 999999999 555522345 689999999984 3343444 89999999999999888877665
Q ss_pred C
Q 044683 234 P 234 (247)
Q Consensus 234 ~ 234 (247)
.
T Consensus 254 ~ 254 (571)
T 3cvr_A 254 T 254 (571)
T ss_dssp H
T ss_pred h
Confidence 3
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=7.2e-20 Score=148.18 Aligned_cols=169 Identities=22% Similarity=0.306 Sum_probs=132.7
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|++|++++|.+++..+ +..+++|++|++++|.++ .++ .+.. +++|++|++++|.++. ++. +..+++|++|
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~-l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAG-LQSIKTLDLTSTQITD-VTP-LAGLSNLQVL 134 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTT-CTTCCEEECTTSCCCC-CGG-GTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcC-CCCCCEEECCCCCCCC-chh-hcCCCCCCEE
Confidence 4789999999999986544 899999999999999998 555 4444 8999999999999985 443 8899999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 160 (247)
++++|.++ .++. +..+++|+.|++++|.++ + ++. +..+++|++|++++|.+++. +. +..+++|
T Consensus 135 ~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~----------~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L 197 (308)
T 1h6u_A 135 YLDLNQIT-NISP--LAGLTNLQYLSIGNAQVS----------D-LTP-LANLSKLTTLKADDNKISDI-SP-LASLPNL 197 (308)
T ss_dssp ECCSSCCC-CCGG--GGGCTTCCEEECCSSCCC----------C-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTC
T ss_pred ECCCCccC-cCcc--ccCCCCccEEEccCCcCC----------C-Chh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCC
Confidence 99999998 5655 445888887777777654 2 233 77888899999999988854 32 7788899
Q ss_pred CEEEccCCcCcCCCCC-CCCCCCeEeccCCcccc
Q 044683 161 TILDLSNNTIFGTLPS-CFRTSSFVKKQDRRTVG 193 (247)
Q Consensus 161 ~~L~l~~n~l~~~~~~-~~~~~~~L~l~~n~~~~ 193 (247)
++|++++|.+++..+- .+.....|++++|++++
T Consensus 198 ~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 198 IEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred CEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 9999999998855431 11233388999998875
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=3.8e-22 Score=169.89 Aligned_cols=86 Identities=16% Similarity=0.096 Sum_probs=41.3
Q ss_pred CcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCCCC--------CCCCCeEeccCCcccccCCCcceee
Q 044683 135 ALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLPSC--------FRTSSFVKKQDRRTVGKPCGSLGLD 202 (247)
Q Consensus 135 ~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~l~~n~~~~~~~~~~~l~ 202 (247)
+|++|++++|.+++. ++..+..+++|++|++++|.+++..+.. ......|++++|.+++... .
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~-----~ 388 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC-----S 388 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH-----H
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhH-----H
Confidence 455555555554432 2334444555555555555554321111 1122255555555543100 0
Q ss_pred eecchhcC--CCceEeccCCeeeec
Q 044683 203 ILPHLFRR--RPRRLAVEGFDLVLE 225 (247)
Q Consensus 203 l~p~~~~~--~L~~L~l~~n~l~~~ 225 (247)
.+|.++.. +|++|++++|++++.
T Consensus 389 ~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 389 SLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHhCCCccEEECCCCCCCHH
Confidence 13444443 778888888877653
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.2e-20 Score=155.39 Aligned_cols=186 Identities=18% Similarity=0.135 Sum_probs=122.4
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccE-EEccCCccccCChHhhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIH-LNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++++|++++|.|+...+.+|.++++|++|++++|.+.+.+|...+..++++++ +.+..|+++...|.+|..+++|+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 357888888888886555678888888888888888765677766666777665 5566677876667778888888888
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCC----------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcC-
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNN----------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPN- 143 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n----------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~- 143 (247)
++++|.+. .++...+....++..+++.++ .++.+++++|+++. ++.......+++.+++.+
T Consensus 110 ~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 110 LISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTC
T ss_pred cccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccC
Confidence 88888887 555544433455666665432 23356677777663 344344455667777654
Q ss_pred CcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCCeEeccCC
Q 044683 144 NNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSSFVKKQDR 189 (247)
Q Consensus 144 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~l~~n 189 (247)
|.++...+++|..+++|++||+++|+++..++..+.....|...++
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~ 233 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC
Confidence 5555333355667777777777777777555555555555554444
No 92
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=1.5e-22 Score=172.32 Aligned_cols=238 Identities=19% Similarity=0.107 Sum_probs=125.6
Q ss_pred CCcEEEccCCcccc----ccCccccCCCCCcEEEccCCceeecCCchhhhh----cccccEEEccCCccccCC----hHh
Q 044683 3 SLKVLDASSNQLTG----NISPNLCELVLLRELYIDNNDLRGHIPVEIGTY----LLVFIHLNLSRNAFNGSI----PSS 70 (247)
Q Consensus 3 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~----~~~ 70 (247)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+... .++|++|++++|.++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666666663 335556666677777777766654333333322 234666666666665422 444
Q ss_pred hhcCCCCCEEeccCCcccccCchhHh----hcCCCccEEEccCCC------------------ccEEEccCCcCCCCCch
Q 044683 71 FFDMKMLKSLDISHNQLTGEIPERMA----TGCFSLEILALSNNS------------------LQGLYLSDNRLFGRIPR 128 (247)
Q Consensus 71 ~~~l~~L~~L~l~~n~~~~~~~~~~~----~~~~~L~~l~l~~n~------------------l~~l~l~~n~~~~~~~~ 128 (247)
+..+++|++|++++|.+.+..+..+. ...++|+.|++++|. ++.+++++|.+++....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 45566666777666666522222221 123466666666552 33566666655432211
Q ss_pred -----hhhcccCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCCCCC--------CCCCeEeccCCcc
Q 044683 129 -----WLGNLLALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLPSCF--------RTSSFVKKQDRRT 191 (247)
Q Consensus 129 -----~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--------~~~~~L~l~~n~~ 191 (247)
.+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+ .....|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 112355666666666666532 34555556666666666666643211111 1233666666665
Q ss_pred cccCC----Cc------c-eeee------------ecchhc--C-CCceEeccCCeeee----cCCccccCCCchhhhh
Q 044683 192 VGKPC----GS------L-GLDI------------LPHLFR--R-RPRRLAVEGFDLVL----ELPQIVCGLPTCFALG 240 (247)
Q Consensus 192 ~~~~~----~~------~-~l~l------------~p~~~~--~-~L~~L~l~~n~l~~----~~~~~~~~l~~L~~l~ 240 (247)
++... .. + .+++ +..++. . +|++|++++|++++ .+|..+..+++|+.++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 54311 00 0 2222 122222 2 77777777777775 5666666677776664
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=4.6e-20 Score=142.23 Aligned_cols=152 Identities=25% Similarity=0.367 Sum_probs=95.9
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH 84 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 84 (247)
+.++++++.++ .+|..+. +.++.|++++|.++ .++...+..+++|++|++++|.++...|.+|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 35666666666 3444443 46677777777776 44443334466777777777777666666677777777777777
Q ss_pred CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEE
Q 044683 85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164 (247)
Q Consensus 85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 164 (247)
|.++ .+|...+..+++|+.|++++|.+ ++..+..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~L~~N~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 90 NKIT-ELPKSLFEGLFSLQLLLLNANKI----------NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCC----------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CcCC-ccCHhHccCCCCCCEEECCCCCC----------CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 7776 66666555566666554444443 334455666667777777777777655555666667777777
Q ss_pred ccCCcCc
Q 044683 165 LSNNTIF 171 (247)
Q Consensus 165 l~~n~l~ 171 (247)
+++|.+.
T Consensus 159 L~~N~~~ 165 (220)
T 2v9t_B 159 LAQNPFI 165 (220)
T ss_dssp CCSSCEE
T ss_pred eCCCCcC
Confidence 7777665
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=9.4e-20 Score=140.49 Aligned_cols=153 Identities=21% Similarity=0.227 Sum_probs=85.8
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH 84 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 84 (247)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+..++..+++|++|++++|.++...+.+|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45666666665 3444332 23456666666666333444344466666666666666655555566666666666666
Q ss_pred CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEE
Q 044683 85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILD 164 (247)
Q Consensus 85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 164 (247)
|.++ .++...+..+++|+.|++++|.+ ++..|..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 91 N~l~-~~~~~~~~~l~~L~~L~Ls~N~l----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 91 NRLE-NVQHKMFKGLESLKTLMLRSNRI----------TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp SCCC-CCCGGGGTTCSSCCEEECTTSCC----------CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CccC-ccCHhHhcCCcCCCEEECCCCcC----------CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 6665 44444444455555444443333 333455555566666666666666655555666666666666
Q ss_pred ccCCcCc
Q 044683 165 LSNNTIF 171 (247)
Q Consensus 165 l~~n~l~ 171 (247)
+++|.++
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 6666655
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=5.2e-20 Score=151.59 Aligned_cols=104 Identities=20% Similarity=0.146 Sum_probs=82.6
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCCh-HhhhcCCCCCE-Eec
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIP-SSFFDMKMLKS-LDI 82 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~-L~l 82 (247)
++++.++++++ .+|..+. +++++|++++|+++ .+|+..+..+++|++|++++|.+...+| .+|..++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56778888888 5676653 58999999999998 8888777779999999999999854444 56788888776 556
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCCCcc
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNNSLQ 113 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 113 (247)
..|.++ .++...+..+++|+.+++++|.++
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCS
T ss_pred cCCccc-ccCchhhhhccccccccccccccc
Confidence 678888 777777777899998888887655
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.5e-20 Score=153.83 Aligned_cols=196 Identities=15% Similarity=0.136 Sum_probs=155.5
Q ss_pred CCCCcEEEccCCccccc-cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC-cccc-CChHhhhcCCCC
Q 044683 1 MTSLKVLDASSNQLTGN-ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN-AFNG-SIPSSFFDMKML 77 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L 77 (247)
+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+.. +++|++|++++| .++. .++..+..+++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 46799999999998865 7778889999999999999998777777766 899999999999 6764 256678889999
Q ss_pred CEEeccCC-ccccc-CchhHhhcCC-CccEEEccCC-----------------CccEEEccCCc-CCCCCchhhhcccCc
Q 044683 78 KSLDISHN-QLTGE-IPERMATGCF-SLEILALSNN-----------------SLQGLYLSDNR-LFGRIPRWLGNLLAL 136 (247)
Q Consensus 78 ~~L~l~~n-~~~~~-~~~~~~~~~~-~L~~l~l~~n-----------------~l~~l~l~~n~-~~~~~~~~~~~~~~L 136 (247)
++|++++| .+++. ++.. +..++ +|+.|++++| +++.|++++|. +++..+..+..+++|
T Consensus 171 ~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 99999999 88743 3443 44588 9999999998 34589999999 777778889999999
Q ss_pred CeeeCcCCc-ccccCchhhhCCCCCCEEEccCCcCcCCCCCCCC-CCCeEeccCCcccccCCCcc
Q 044683 137 EDIMMPNNN-LQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFR-TSSFVKKQDRRTVGKPCGSL 199 (247)
Q Consensus 137 ~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~l~~n~~~~~~~~~~ 199 (247)
++|++++|. ++......+..+++|+.|++++| ++...-..+. ....|++++|.+++..|..+
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCcc
Confidence 999999995 43222236788999999999999 5432222221 24478899999999877643
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.82 E-value=4.4e-19 Score=137.59 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=112.3
Q ss_pred CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEE
Q 044683 27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILA 106 (247)
Q Consensus 27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 106 (247)
.-+.++.+++.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+. .++...+..+++|+.|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 3466788888777 7777653 57888888888888776777888888888888888887 77766666677777666
Q ss_pred ccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCe
Q 044683 107 LSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSF 183 (247)
Q Consensus 107 l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~ 183 (247)
+++|.++ +..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+.. ...
T Consensus 95 Ls~N~l~----------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 95 LGTNQLT----------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp CCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCC----------ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 6555554 334555677888888888888887 66777788888888888888888665555542 337
Q ss_pred EeccCCcccccCC
Q 044683 184 VKKQDRRTVGKPC 196 (247)
Q Consensus 184 L~l~~n~~~~~~~ 196 (247)
|++++|.+....+
T Consensus 164 L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 164 AYLFGNPWDCECR 176 (229)
T ss_dssp EECTTSCBCTTBG
T ss_pred EEeeCCCccCCcc
Confidence 8888888776543
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.81 E-value=2.2e-19 Score=136.02 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=67.0
Q ss_pred CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCcc
Q 044683 24 ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103 (247)
Q Consensus 24 ~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 103 (247)
.++++++|++++|.++ .+| .+.. +++|++|++++|.++ .. ..+..+++|++|++++|.+++..+..+ ..+++|+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~ 115 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEY-AHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT 115 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGG-CTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred hcCCccEEeccCCCcc-ChH-HHhc-CCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence 3445555555555554 444 2322 455555555555443 11 244555555555555555543223222 2244444
Q ss_pred EEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCc-ccccCchhhhCCCCCCEEEccCCcCcCCCC-CCCCCC
Q 044683 104 ILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNN-LQGPIPIEFCQLELLTILDLSNNTIFGTLP-SCFRTS 181 (247)
Q Consensus 104 ~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~ 181 (247)
.|++++| .+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++..+ ..+...
T Consensus 116 ~L~Ls~n----------~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L 183 (197)
T 4ezg_A 116 LLDISHS----------AHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKL 183 (197)
T ss_dssp EEECCSS----------BCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSC
T ss_pred EEEecCC----------ccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHHhccCCCC
Confidence 3333332 2223334445555555555555554 33 333 34555555555555555553211 111122
Q ss_pred CeEeccCCccc
Q 044683 182 SFVKKQDRRTV 192 (247)
Q Consensus 182 ~~L~l~~n~~~ 192 (247)
..|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 25555555543
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.3e-19 Score=149.85 Aligned_cols=173 Identities=23% Similarity=0.234 Sum_probs=125.2
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhh-hcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGT-YLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
+.++++++.++ .+|..+. ..++.|++++|.++ .++...+. .+++|++|++++|.++...+.+|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 56788888887 4565544 35788888888888 55555443 57888888888888887666778888888888888
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhh---hCCCCC
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEF---CQLELL 160 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l---~~~~~L 160 (247)
+|.++ .++...+..+++|+.|++++|.++.+ .+..+..+++|++|++++|.+++..+..+ ..+++|
T Consensus 97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~----------~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVV----------DRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp SSCCC-EECTTTTTTCTTCCEEECCSSCCCEE----------CTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred CCcCC-cCCHHHhCCCcCCCEEECCCCcccEE----------CHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence 88887 67766666677887777666666543 36677888888888888888885444444 568888
Q ss_pred CEEEccCCcCcCCCCCCCCCC-----CeEeccCCccc
Q 044683 161 TILDLSNNTIFGTLPSCFRTS-----SFVKKQDRRTV 192 (247)
Q Consensus 161 ~~L~l~~n~l~~~~~~~~~~~-----~~L~l~~n~~~ 192 (247)
+.|++++|.+++..+..+... ..|++++|.+.
T Consensus 166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 888888888885544444322 35788888776
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=2.9e-20 Score=155.06 Aligned_cols=195 Identities=18% Similarity=0.167 Sum_probs=148.9
Q ss_pred CCCCcEEEccCCc---cccccCccc-------cCCCCCcEEEccCCceee----cCCchhhhhcccccEEEccCCccccC
Q 044683 1 MTSLKVLDASSNQ---LTGNISPNL-------CELVLLRELYIDNNDLRG----HIPVEIGTYLLVFIHLNLSRNAFNGS 66 (247)
Q Consensus 1 l~~L~~L~l~~n~---l~~~~~~~~-------~~l~~L~~L~l~~n~i~~----~~~~~~~~~l~~L~~L~l~~n~l~~~ 66 (247)
+++|++|++++|. +++.+|..+ ..+++|++|++++|.+++ .++..+.. +++|++|++++|.++..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~-~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK-HTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHH-CTTCCEEECCSSCCHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHh-CCCCCEEECcCCCCCHH
Confidence 4678999999964 444445444 688999999999999985 25555554 78999999999998754
Q ss_pred ChHhhh----cC---------CCCCEEeccCCcccc-cCch--hHhhcCCCccEEEccCCC-------------------
Q 044683 67 IPSSFF----DM---------KMLKSLDISHNQLTG-EIPE--RMATGCFSLEILALSNNS------------------- 111 (247)
Q Consensus 67 ~~~~~~----~l---------~~L~~L~l~~n~~~~-~~~~--~~~~~~~~L~~l~l~~n~------------------- 111 (247)
.+..+. .+ ++|++|++++|.+++ .++. ..+..+++|+.|++++|.
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 444443 33 899999999999862 3332 233458899999998884
Q ss_pred ccEEEccCCcCC----CCCchhhhcccCcCeeeCcCCccccc----CchhhhC--CCCCCEEEccCCcCcC----CCCCC
Q 044683 112 LQGLYLSDNRLF----GRIPRWLGNLLALEDIMMPNNNLQGP----IPIEFCQ--LELLTILDLSNNTIFG----TLPSC 177 (247)
Q Consensus 112 l~~l~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~--~~~L~~L~l~~n~l~~----~~~~~ 177 (247)
++.|++++|.++ ..++..+..+++|++|++++|.+++. ++..+.. +++|+.|++++|.+++ .+|..
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~ 297 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence 448899999986 56778889999999999999999865 4566644 8999999999999996 35544
Q ss_pred C----CCCCeEeccCCcccccCC
Q 044683 178 F----RTSSFVKKQDRRTVGKPC 196 (247)
Q Consensus 178 ~----~~~~~L~l~~n~~~~~~~ 196 (247)
+ .....|++++|.+++..+
T Consensus 298 l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 298 IDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhcCCCceEEEccCCcCCcchh
Confidence 3 345599999999997654
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.1e-18 Score=140.04 Aligned_cols=166 Identities=23% Similarity=0.315 Sum_probs=102.7
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|+.|++++|.+... +.+..+++|++|++++|.++ .++. +. .+++|++|++++|.++. ++ .+..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-cc-cCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 4577777777777643 23667777777777777776 4444 33 37777777777777763 33 367777777777
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 161 (247)
+++|.++ .++. +..+++|+.|++++|.++ +. ..+..+++|++|++++|.+++..+ +..+++|+
T Consensus 119 L~~n~i~-~~~~--l~~l~~L~~L~l~~n~l~----------~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~ 181 (291)
T 1h6t_A 119 LEHNGIS-DING--LVHLPQLESLYLGNNKIT----------DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 181 (291)
T ss_dssp CTTSCCC-CCGG--GGGCTTCCEEECCSSCCC----------CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred CCCCcCC-CChh--hcCCCCCCEEEccCCcCC----------cc--hhhccCCCCCEEEccCCccccchh--hcCCCccC
Confidence 7777776 4432 334666666666555443 21 345566667777777776664332 56666777
Q ss_pred EEEccCCcCcCCCCCCCC---CCCeEeccCCcccc
Q 044683 162 ILDLSNNTIFGTLPSCFR---TSSFVKKQDRRTVG 193 (247)
Q Consensus 162 ~L~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~ 193 (247)
+|++++|.+++. +. +. ....|++++|+++.
T Consensus 182 ~L~L~~N~i~~l-~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 182 NLYLSKNHISDL-RA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCBC-GG-GTTCTTCSEEEEEEEEEEC
T ss_pred EEECCCCcCCCC-hh-hccCCCCCEEECcCCcccC
Confidence 777777766632 22 22 22266666666654
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=7.5e-19 Score=141.10 Aligned_cols=181 Identities=18% Similarity=0.208 Sum_probs=140.7
Q ss_pred ccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCccc
Q 044683 9 ASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLT 88 (247)
Q Consensus 9 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 88 (247)
+..+.+++. ..+..+++|+.|++++|.++ .++. +.. +++|++|++++|.++.. +. +..+++|++|++++|.++
T Consensus 31 l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~-~~~-l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 31 LKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQY-LPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp TTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTT-GGG-CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC
T ss_pred hcCCCcccc--cchhhcCcccEEEccCCCcc-cChh-Hhc-CCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC
Confidence 444444433 22456789999999999998 6654 444 89999999999999954 44 889999999999999998
Q ss_pred ccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCC
Q 044683 89 GEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168 (247)
Q Consensus 89 ~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 168 (247)
.++. +..+++|+.|++++|.++. + ..+..+++|++|++++|.+++. ..+..+++|++|++++|
T Consensus 104 -~~~~--l~~l~~L~~L~L~~n~i~~-----------~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N 166 (291)
T 1h6t_A 104 -DLSS--LKDLKKLKSLSLEHNGISD-----------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN 166 (291)
T ss_dssp -CGGG--GTTCTTCCEEECTTSCCCC-----------C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred -CChh--hccCCCCCEEECCCCcCCC-----------C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCC
Confidence 5554 4458888877777776653 2 3577899999999999999954 67889999999999999
Q ss_pred cCcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecC
Q 044683 169 TIFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLEL 226 (247)
Q Consensus 169 ~l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~ 226 (247)
.+++..+ +. ....|++++|.+++. |. +.. +|+.|++++|+++...
T Consensus 167 ~l~~~~~--l~~l~~L~~L~L~~N~i~~l----------~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 167 QISDIVP--LAGLTKLQNLYLSKNHISDL----------RA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCCCCGG--GTTCTTCCEEECCSSCCCBC----------GG-GTTCTTCSEEEEEEEEEECCC
T ss_pred ccccchh--hcCCCccCEEECCCCcCCCC----------hh-hccCCCCCEEECcCCcccCCc
Confidence 9996654 33 334999999999863 21 333 8999999999998643
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=1.5e-18 Score=152.16 Aligned_cols=168 Identities=24% Similarity=0.331 Sum_probs=104.9
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|+.|++++|.+.. ++ .+..+++|+.|++++|.++ .++. +. .+++|+.|++++|.+.. ++ .+..+++|++|+
T Consensus 43 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~-~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LT-NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-GG-GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-hc-cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 456777777777763 22 4667777777777777776 4444 33 37777777777777763 33 566777777777
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCC
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLT 161 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 161 (247)
+++|.+. .++. +..+++|+.|++++|.++ +. ..+..+++|+.|+|++|.+++..+ +..+++|+
T Consensus 116 Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~----------~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~ 178 (605)
T 1m9s_A 116 LEHNGIS-DING--LVHLPQLESLYLGNNKIT----------DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQ 178 (605)
T ss_dssp CTTSCCC-CCGG--GGGCTTCSEEECCSSCCC----------CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ecCCCCC-CCcc--ccCCCccCEEECCCCccC----------Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCC
Confidence 7777776 4432 334666666665555443 21 345666777777777777765433 66677777
Q ss_pred EEEccCCcCcCCCCCC--CCCCCeEeccCCccccc
Q 044683 162 ILDLSNNTIFGTLPSC--FRTSSFVKKQDRRTVGK 194 (247)
Q Consensus 162 ~L~l~~n~l~~~~~~~--~~~~~~L~l~~n~~~~~ 194 (247)
.|++++|.+++. +.. +..+..|++++|++++.
T Consensus 179 ~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 179 NLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred EEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence 777777777643 221 12233677777776654
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=134.40 Aligned_cols=154 Identities=22% Similarity=0.250 Sum_probs=128.1
Q ss_pred CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCCh-HhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEE
Q 044683 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIP-SSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILA 106 (247)
Q Consensus 28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 106 (247)
-+.+++++|.++ .+|..+. ..+++|++++|.++...+ ..|..+++|++|++++|.++ .++...+..+++|+.|+
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEE
Confidence 368999999998 8898764 467999999999986644 45889999999999999998 67766666688887666
Q ss_pred ccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC---Ce
Q 044683 107 LSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS---SF 183 (247)
Q Consensus 107 l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~ 183 (247)
+++|.+ ++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|... ..
T Consensus 88 Ls~N~l----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 88 LTSNRL----------ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp CCSSCC----------CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCCCcc----------CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 655554 45567778999999999999999998888999999999999999999998888877633 39
Q ss_pred EeccCCcccccCC
Q 044683 184 VKKQDRRTVGKPC 196 (247)
Q Consensus 184 L~l~~n~~~~~~~ 196 (247)
|++++|.+.+..+
T Consensus 158 L~L~~N~l~c~c~ 170 (220)
T 2v70_A 158 LNLLANPFNCNCY 170 (220)
T ss_dssp EECCSCCEECSGG
T ss_pred EEecCcCCcCCCc
Confidence 9999999987654
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2.9e-18 Score=132.94 Aligned_cols=155 Identities=23% Similarity=0.249 Sum_probs=129.1
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
-+.++.+++.++ .+|..+. +++++|++++|.+++..|..+ ..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVF-DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHh-hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 357888888888 5565554 789999999999994445444 448999999999999986666778999999999999
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEE
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 163 (247)
+|.++ .++...+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 97 ~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-----------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 97 TNQLT-VLPSAVFDRLVHLKELFMCCNKLT-----------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCC-----------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCcCC-ccChhHhCcchhhCeEeccCCccc-----------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 99999 788777777888887777777665 457778899999999999999997666788999999999
Q ss_pred EccCCcCcCCC
Q 044683 164 DLSNNTIFGTL 174 (247)
Q Consensus 164 ~l~~n~l~~~~ 174 (247)
++++|.+....
T Consensus 165 ~l~~N~~~c~c 175 (229)
T 3e6j_A 165 YLFGNPWDCEC 175 (229)
T ss_dssp ECTTSCBCTTB
T ss_pred EeeCCCccCCc
Confidence 99999998543
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=5.9e-19 Score=154.65 Aligned_cols=193 Identities=18% Similarity=0.194 Sum_probs=147.1
Q ss_pred EEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCc
Q 044683 7 LDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQ 86 (247)
Q Consensus 7 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 86 (247)
+.++.+.+.+..+ +..+..|+.|++++|.+. .++ .+.. +++|+.|++++|.++.. +. +..+++|+.|++++|.
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQY-LPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCT-TGGG-CTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCC-CCh-HHcc-CCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCC
Confidence 3455555554433 456889999999999998 676 3444 89999999999999854 43 8899999999999999
Q ss_pred ccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEcc
Q 044683 87 LTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLS 166 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 166 (247)
+. .++. +..+++|+.|++++|.++. + ..+..+++|+.|+|++|.+++. ..+..+++|+.|+++
T Consensus 99 l~-~l~~--l~~l~~L~~L~Ls~N~l~~-----------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 99 IK-DLSS--LKDLKKLKSLSLEHNGISD-----------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp CC-CCTT--STTCTTCCEEECTTSCCCC-----------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CC-CChh--hccCCCCCEEEecCCCCCC-----------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 98 5652 4457888877777766552 2 3478899999999999999954 678899999999999
Q ss_pred CCcCcCCCCC-CCCCCCeEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCeeeecCCccccCCC
Q 044683 167 NNTIFGTLPS-CFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQIVCGLP 234 (247)
Q Consensus 167 ~n~l~~~~~~-~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~ 234 (247)
+|.+++..|- .+..+..|++++|.+++. + .+.. +|+.|++++|.+++.....+..+.
T Consensus 162 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-~----------~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~ 221 (605)
T 1m9s_A 162 DNQISDIVPLAGLTKLQNLYLSKNHISDL-R----------ALAGLKNLDVLELFSQECLNKPINHQSNLV 221 (605)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCBC-G----------GGTTCTTCSEEECCSEEEECCCCCCCSSCE
T ss_pred CCcCCCchhhccCCCCCEEECcCCCCCCC-h----------HHccCCCCCEEEccCCcCcCCcccccccEE
Confidence 9999976661 112344999999999863 2 1333 899999999999876544444443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=4.1e-18 Score=131.28 Aligned_cols=151 Identities=20% Similarity=0.268 Sum_probs=126.1
Q ss_pred cEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEcc
Q 044683 29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALS 108 (247)
Q Consensus 29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 108 (247)
+.++++++.++ .+|..+. +++++|++++|.++...+..|..+++|++|++++|.++ .++...+..+++|+.|+++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECC
Confidence 67999999998 8998764 58999999999999777778999999999999999998 5544455668888877777
Q ss_pred CCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CCeEe
Q 044683 109 NNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SSFVK 185 (247)
Q Consensus 109 ~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~ 185 (247)
+|.++ ...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.. ...|+
T Consensus 89 ~N~l~----------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 89 GNKIT----------ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCcCC----------ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 66665 334556788999999999999999888889999999999999999999777776753 33999
Q ss_pred ccCCccccc
Q 044683 186 KQDRRTVGK 194 (247)
Q Consensus 186 l~~n~~~~~ 194 (247)
+++|.+...
T Consensus 159 L~~N~~~c~ 167 (220)
T 2v9t_B 159 LAQNPFICD 167 (220)
T ss_dssp CCSSCEECS
T ss_pred eCCCCcCCC
Confidence 999998754
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=8.8e-19 Score=144.85 Aligned_cols=158 Identities=22% Similarity=0.169 Sum_probs=128.6
Q ss_pred CCCcEEEccCCccccccCcccc-CCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLTGNISPNLC-ELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+.++.|++++|.+++..+..+. .+++|++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3578999999999987777787 8999999999999999 5555544559999999999999997777789999999999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhh---hcccCcCeeeCcCCcccccCchhhhCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWL---GNLLALEDIMMPNNNLQGPIPIEFCQL 157 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~~~l~~~ 157 (247)
++++|.++ .++...+..+++|+.|++++|.++. ..+..+ ..+++|++|++++|.+++..+..+..+
T Consensus 118 ~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~----------l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 186 (361)
T 2xot_A 118 LLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR----------FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186 (361)
T ss_dssp ECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCS----------CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred ECCCCccc-EECHHHhCCcccCCEEECCCCcCCe----------eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence 99999998 6665566678888877777776653 223333 568899999999999996666778888
Q ss_pred CC--CCEEEccCCcCc
Q 044683 158 EL--LTILDLSNNTIF 171 (247)
Q Consensus 158 ~~--L~~L~l~~n~l~ 171 (247)
+. ++.|++++|.+.
T Consensus 187 ~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHTTEECCSSCEE
T ss_pred cHhhcceEEecCCCcc
Confidence 76 488999999876
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.1e-18 Score=138.01 Aligned_cols=164 Identities=22% Similarity=0.261 Sum_probs=105.7
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
++.++++++.+++.. .+..+++|++|++++|.++ .++ .+.. +++|++|++++|.+++. +. +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~-l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQF-FTNLKELHLSHNQISDL-SP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGG-CTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhh-CCCCCEEECCCCccCCC-hh-hccCCCCCEEECC
Confidence 344566677776433 4667778888888888877 666 3443 77888888888887743 33 7778888888888
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEE
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTIL 163 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 163 (247)
+|.++ .++... . ++|+.|++++|.+ ++ + ..+..+++|++|++++|++++. + .+..+++|++|
T Consensus 94 ~N~l~-~l~~~~--~-~~L~~L~L~~N~l----------~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L 155 (263)
T 1xeu_A 94 RNRLK-NLNGIP--S-ACLSRLFLDNNEL----------RD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVL 155 (263)
T ss_dssp SSCCS-CCTTCC--C-SSCCEEECCSSCC----------SB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEE
T ss_pred CCccC-CcCccc--c-CcccEEEccCCcc----------CC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEE
Confidence 88877 555421 1 4555444444433 32 2 2466777777777777777743 3 56777777777
Q ss_pred EccCCcCcCCCCCCCC---CCCeEeccCCccccc
Q 044683 164 DLSNNTIFGTLPSCFR---TSSFVKKQDRRTVGK 194 (247)
Q Consensus 164 ~l~~n~l~~~~~~~~~---~~~~L~l~~n~~~~~ 194 (247)
++++|.+++. ..+. ....|++++|.+++.
T Consensus 156 ~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 156 DLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 7777777754 2232 233777777777654
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.8e-19 Score=161.31 Aligned_cols=136 Identities=24% Similarity=0.308 Sum_probs=90.9
Q ss_pred hhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCc
Q 044683 48 TYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP 127 (247)
Q Consensus 48 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~ 127 (247)
..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+. .+++|+.|++++|.++ .+|
T Consensus 221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-----------~lp 286 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-----------SLP 286 (727)
T ss_dssp -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-----------SCC
T ss_pred ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-----------ccC
Confidence 33677777777777776 55666667777777777777777 6776553 3666665555555443 446
Q ss_pred hhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC----eEeccCCcccccCCCc
Q 044683 128 RWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS----FVKKQDRRTVGKPCGS 198 (247)
Q Consensus 128 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~----~L~l~~n~~~~~~~~~ 198 (247)
..++.+++|++|+|++|.++ .+|..+..+++|++|+|++|.+++.+|..+.... .+++++|.++|.+|..
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred hhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence 66777777777777777776 5566677777777777777777766665553222 4667777777766653
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.5e-17 Score=131.59 Aligned_cols=149 Identities=19% Similarity=0.317 Sum_probs=122.7
Q ss_pred CCCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
+++|+.|++++|.++. ++ .+..+++|++|++++|.++ .++. +. .+++|++|++++|.++. ++. +.. ++|++|
T Consensus 40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~-~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LK-DLTKLEELSVNRNRLKN-LNG-IPS-ACLSRL 111 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GT-TCSSCCEEECCSSCCSC-CTT-CCC-SSCCEE
T ss_pred cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hc-cCCCCCEEECCCCccCC-cCc-ccc-CcccEE
Confidence 3679999999999984 44 7889999999999999998 6666 44 48999999999999985 444 333 899999
Q ss_pred eccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL 160 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 160 (247)
++++|.++ .++. +..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++. ..+..+++|
T Consensus 112 ~L~~N~l~-~~~~--l~~l~~L~~L~Ls~N~i~~-----------~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 112 FLDNNELR-DTDS--LIHLKNLEILSIRNNKLKS-----------IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp ECCSSCCS-BSGG--GTTCTTCCEEECTTSCCCB-----------CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred EccCCccC-CChh--hcCcccccEEECCCCcCCC-----------Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 99999998 5653 4458888877777776653 23 578899999999999999965 678899999
Q ss_pred CEEEccCCcCcCCC
Q 044683 161 TILDLSNNTIFGTL 174 (247)
Q Consensus 161 ~~L~l~~n~l~~~~ 174 (247)
+.|++++|.+++..
T Consensus 175 ~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 175 NWIDLTGQKCVNEP 188 (263)
T ss_dssp CEEEEEEEEEECCC
T ss_pred CEEeCCCCcccCCc
Confidence 99999999998553
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3.1e-17 Score=124.17 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=89.6
Q ss_pred cccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchh
Q 044683 50 LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRW 129 (247)
Q Consensus 50 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~ 129 (247)
+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++ . +..+++|+.|++++|.+ ++..+..
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l----------~~~~~~~ 107 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDV----------TSDKIPN 107 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTC----------BGGGSCC
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCcc----------CcccChh
Confidence 667777777777776 445 4667777777777777665 333 2 33466666555444433 3344556
Q ss_pred hhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCc-CcCCCCCCCC---CCCeEeccCCcccccCCCcceeeeec
Q 044683 130 LGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNT-IFGTLPSCFR---TSSFVKKQDRRTVGKPCGSLGLDILP 205 (247)
Q Consensus 130 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~---~~~~L~l~~n~~~~~~~~~~~l~l~p 205 (247)
+..+++|++|++++|.+++..+..+..+++|++|++++|. ++ .++ .+. ....|++++|.+++..+
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~--------- 176 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRG--------- 176 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTT---------
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHH---------
Confidence 6677777777777777776566677777777777777776 54 333 222 23377777777765221
Q ss_pred chhcC--CCceEeccCCeeee
Q 044683 206 HLFRR--RPRRLAVEGFDLVL 224 (247)
Q Consensus 206 ~~~~~--~L~~L~l~~n~l~~ 224 (247)
+.. +|+.|++++|++.+
T Consensus 177 --l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 177 --IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp --GGGCSSCCEEEECBC----
T ss_pred --hccCCCCCEEEeeCcccCC
Confidence 222 67777777777653
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2.4e-17 Score=143.20 Aligned_cols=161 Identities=25% Similarity=0.323 Sum_probs=123.5
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEe
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLD 81 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 81 (247)
++|++|++++|.++ .+| ..+++|++|++++|.++ .+|. +.. +|++|++++|.+++ +|. .+++|++|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~~---~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LPA---SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CCT---TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hhc---CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 56999999999999 566 45789999999999999 5888 543 89999999999995 665 689999999
Q ss_pred ccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCC-
Q 044683 82 ISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELL- 160 (247)
Q Consensus 82 l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L- 160 (247)
+++|.++ .+|. .+++|+.|++++|.++ + +|. +. ++|++|++++|.++ .+|. +.. +|
T Consensus 147 Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~----------~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~ 203 (571)
T 3cvr_A 147 ADNNQLT-MLPE----LPTSLEVLSVRNNQLT----------F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNH 203 (571)
T ss_dssp CCSSCCS-CCCC----CCTTCCEEECCSSCCS----------C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC------
T ss_pred CCCCccC-cCCC----cCCCcCEEECCCCCCC----------C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhh
Confidence 9999998 5776 3667776666666554 3 444 44 78999999999998 5565 443 66
Q ss_pred ------CEEEccCCcCcCCCCCCC-CC--CCeEeccCCcccccCCCcc
Q 044683 161 ------TILDLSNNTIFGTLPSCF-RT--SSFVKKQDRRTVGKPCGSL 199 (247)
Q Consensus 161 ------~~L~l~~n~l~~~~~~~~-~~--~~~L~l~~n~~~~~~~~~~ 199 (247)
+.|++++|.|+ .+|..+ .. ...|++++|.+++.+|..+
T Consensus 204 ~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 204 HSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp ----CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred cccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 99999999998 455533 32 2389999999988765543
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=1.7e-16 Score=117.02 Aligned_cols=134 Identities=24% Similarity=0.209 Sum_probs=106.2
Q ss_pred CCCCcEEEccCCcee-ecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCcc
Q 044683 25 LVLLRELYIDNNDLR-GHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLE 103 (247)
Q Consensus 25 l~~L~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 103 (247)
.+.+++|++++|.++ +.+|..+.. +++|++|++++|.++.. ..+..+++|++|++++|.+.+.+|... ..+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAE-FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGG-GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHh-CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCC
Confidence 478899999999987 577777554 88999999999998854 678889999999999999984455544 3488888
Q ss_pred EEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc---hhhhCCCCCCEEEccCCcCc
Q 044683 104 ILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP---IEFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 104 ~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~l~ 171 (247)
.|++++|.++.+ ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 99 ~L~Ls~N~l~~~---------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 99 HLNLSGNKLKDI---------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EEECBSSSCCSS---------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EEeccCCccCcc---------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777776665421 112678889999999999999996544 47889999999999999987
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=7.3e-17 Score=118.95 Aligned_cols=136 Identities=21% Similarity=0.151 Sum_probs=111.2
Q ss_pred CCCcEEEccCCccc-cccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 2 TSLKVLDASSNQLT-GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 2 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+.. +++|++|++++|.++...|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 57999999999998 677888899999999999999998 55 44544 8999999999999997688888889999999
Q ss_pred eccCCcccccCch-hHhhcCCCccEEEccCCCccEEEccCCcCCCCCc---hhhhcccCcCeeeCcCCcccccCch
Q 044683 81 DISHNQLTGEIPE-RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIP---RWLGNLLALEDIMMPNNNLQGPIPI 152 (247)
Q Consensus 81 ~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~ 152 (247)
++++|.++ .++. ..+..+++|+.+++++|.++ +..+ ..+..+++|++|++++|.+. ..|+
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~----------~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT----------NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG----------TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc----------chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 99999998 6553 34455788887776666554 3333 47888999999999999987 4443
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.71 E-value=3.6e-18 Score=152.90 Aligned_cols=154 Identities=23% Similarity=0.331 Sum_probs=118.7
Q ss_pred ccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHh
Q 044683 17 NISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMA 96 (247)
Q Consensus 17 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 96 (247)
..+..+..+..|+.|++++|.+. .+|..++. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 34777889999999999999998 99999886 999999999999999 78999999999999999999999 8988765
Q ss_pred hcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCC-CCEEEccCCcCcCCCC
Q 044683 97 TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLEL-LTILDLSNNTIFGTLP 175 (247)
Q Consensus 97 ~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~ 175 (247)
. +++|+.|++++|.++ .+|..++.+++|++|+|++|.+++.+|..+..... ...+++++|.+++.+|
T Consensus 291 ~-l~~L~~L~L~~N~l~-----------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 291 S-CFQLKYFYFFDNMVT-----------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp G-GTTCSEEECCSSCCC-----------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred C-CCCCCEEECCCCCCC-----------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence 4 888887777766654 46777999999999999999999888877754322 2347899999998888
Q ss_pred CCCCCCCeEeccCC
Q 044683 176 SCFRTSSFVKKQDR 189 (247)
Q Consensus 176 ~~~~~~~~L~l~~n 189 (247)
..+. .++++.|
T Consensus 359 ~~l~---~l~l~~n 369 (727)
T 4b8c_D 359 HERR---FIEINTD 369 (727)
T ss_dssp CC------------
T ss_pred cccc---eeEeecc
Confidence 7554 3455555
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1e-19 Score=158.53 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=138.7
Q ss_pred cCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCc-------------cccCChHhhhcCCCCCEEe-ccCCccc
Q 044683 23 CELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA-------------FNGSIPSSFFDMKMLKSLD-ISHNQLT 88 (247)
Q Consensus 23 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~ 88 (247)
..++.|+.|++++|.++ .+|..++. +++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 45678888888888887 88888876 7888888887664 3445667777777888777 5555544
Q ss_pred ccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCC
Q 044683 89 GEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNN 168 (247)
Q Consensus 89 ~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 168 (247)
.++...... ..+.. +....++.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|
T Consensus 424 -~L~~l~l~~-n~i~~--l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 424 -DLRSKFLLE-NSVLK--MEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496 (567)
T ss_dssp -HHHHHHHHH-HHHHH--HHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred -hhhhhhhhc-ccccc--cCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC
Confidence 333211100 00000 000124466666666665 565 899999999999999999 78899999999999999999
Q ss_pred cCcCCCCCCCC---CCCeEeccCCcccccC-CCcceeeeecchhcC--CCceEeccCCeeeecCCcc---ccCCCchhhh
Q 044683 169 TIFGTLPSCFR---TSSFVKKQDRRTVGKP-CGSLGLDILPHLFRR--RPRRLAVEGFDLVLELPQI---VCGLPTCFAL 239 (247)
Q Consensus 169 ~l~~~~~~~~~---~~~~L~l~~n~~~~~~-~~~~~l~l~p~~~~~--~L~~L~l~~n~l~~~~~~~---~~~l~~L~~l 239 (247)
.+++ +| .+. ....|++++|.+++.. |. .+.. +|+.|++++|.+++.+|.. +..+++|+.|
T Consensus 497 ~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~---------~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 497 ALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQ---------PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTG---------GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcH---------HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 9996 55 454 2339999999999864 43 3455 9999999999999765432 2346666655
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=3.2e-17 Score=123.65 Aligned_cols=130 Identities=23% Similarity=0.295 Sum_probs=83.0
Q ss_pred cEEEccCCceeecCCchhhhhcccccEEEccCCccccCChH-hhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEc
Q 044683 29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPS-SFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL 107 (247)
Q Consensus 29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 107 (247)
+.++++++.++ .+|..++. ++++|++++|.++...+. .+..+++|++|++++|.++ .++...+..+++|+.|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEEC
Confidence 56667777665 66665532 667777777776644332 3666777777777777776 333333344666665555
Q ss_pred cCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCC
Q 044683 108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173 (247)
Q Consensus 108 ~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 173 (247)
++|.++.+ .+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++.
T Consensus 86 s~N~l~~~----------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 86 GENKIKEI----------SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CSCCCCEE----------CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCcCCcc----------CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 55554432 344566677777777777777776677777777777888877777644
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.70 E-value=1.4e-16 Score=115.06 Aligned_cols=129 Identities=22% Similarity=0.243 Sum_probs=86.8
Q ss_pred CCCcEEEccCCcee-ecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccE
Q 044683 26 VLLRELYIDNNDLR-GHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEI 104 (247)
Q Consensus 26 ~~L~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 104 (247)
++++.|++++|.++ +.+|..+.. +++|++|++++|.++.. ..+..+++|++|++++|.+++.+|... ..+++|+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCE
Confidence 56777777777776 566665444 67777777777777644 556777777777777777774355433 33666666
Q ss_pred EEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc---hhhhCCCCCCEEEccC
Q 044683 105 LALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP---IEFCQLELLTILDLSN 167 (247)
Q Consensus 105 l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~ 167 (247)
+++++|.++.+ ..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~---------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDL---------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSH---------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCCh---------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 66555554421 123567778888888888888886554 4677888888888763
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=4e-19 Score=154.77 Aligned_cols=177 Identities=19% Similarity=0.157 Sum_probs=134.8
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCc-------------eeecCCchhhhhcccccEEE-ccCCccccCC
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNND-------------LRGHIPVEIGTYLLVFIHLN-LSRNAFNGSI 67 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~ 67 (247)
++|+.|++++|.++ .+|..+..+++|+.|++++|. ..+..|..+.. +++|+.|+ ++.|.+.. +
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~-l~~L~~L~~l~~n~~~~-L 425 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAAYLDD-L 425 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-HHHHHHHCGGGHHHHHH-H
T ss_pred ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH-HHhcccCcchhhcccch-h
Confidence 56888999999998 789999999999999997764 33344444444 78888888 56554431 1
Q ss_pred hH------hhhc--CCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCee
Q 044683 68 PS------SFFD--MKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDI 139 (247)
Q Consensus 68 ~~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L 139 (247)
+. .+.. ...|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..++.+++|++|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-----------~lp~~~~~l~~L~~L 491 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-----------ALPPALAALRCLEVL 491 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-----------CCCGGGGGCTTCCEE
T ss_pred hhhhhhcccccccCccCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-----------ccchhhhcCCCCCEE
Confidence 11 1111 235999999999998 6886 445888887766666554 568889999999999
Q ss_pred eCcCCcccccCchhhhCCCCCCEEEccCCcCcCCC-CCCCCC---CCeEeccCCcccccCCC
Q 044683 140 MMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGTL-PSCFRT---SSFVKKQDRRTVGKPCG 197 (247)
Q Consensus 140 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~---~~~L~l~~n~~~~~~~~ 197 (247)
++++|.+++ +| .+..+++|++|++++|.+++.. |..+.. ...|++++|.+++.++.
T Consensus 492 ~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 492 QASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp ECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred ECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 999999995 56 8899999999999999999775 776653 33999999999987654
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.4e-16 Score=120.00 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=95.5
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH 84 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 84 (247)
+.++++++.++ .+|..+.. .+++|++++|.+++..+..++..+++|++|++++|.+++..|.+|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57888888886 55655543 7888888888887333333344588888888888888877788888888888888888
Q ss_pred CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccC
Q 044683 85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPI 150 (247)
Q Consensus 85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 150 (247)
|.++ .++...+..+++|+.|++++|.++ +..|..+..+++|++|++++|.+++..
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQIS----------CVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCC----------EECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCC----------eeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 8887 555554555777776665555554 345677778888888888888887553
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=4.6e-16 Score=117.32 Aligned_cols=127 Identities=24% Similarity=0.325 Sum_probs=91.7
Q ss_pred cEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEcc
Q 044683 29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALS 108 (247)
Q Consensus 29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 108 (247)
+.++++++.++ .+|..++ +++++|++++|.++ .+|..|..+++|++|++++|.++ .++...+..+++|+.|+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECC
Confidence 56788888877 7776653 47888888888887 56677888888888888888887 5665555567777655555
Q ss_pred CCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCc
Q 044683 109 NNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 109 ~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 171 (247)
+|.++ +..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 87 ~N~l~----------~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLR----------CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCC----------BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccC----------EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 55444 344566777778888888888887555556777888888888888776
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=8.4e-16 Score=114.21 Aligned_cols=131 Identities=23% Similarity=0.253 Sum_probs=78.9
Q ss_pred CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEc
Q 044683 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL 107 (247)
Q Consensus 28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 107 (247)
.+.++++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|+.+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 356666666666 6665442 46777777777776554555666677777777777766 555554444555555544
Q ss_pred cCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcCcCC
Q 044683 108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTIFGT 173 (247)
Q Consensus 108 ~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 173 (247)
++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 84 ~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 84 HENKLQ----------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCCcc----------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 444433 23344455666677777777766644444456666777777776666543
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=4.1e-16 Score=115.82 Aligned_cols=135 Identities=22% Similarity=0.253 Sum_probs=109.9
Q ss_pred ccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcC
Q 044683 20 PNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGC 99 (247)
Q Consensus 20 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 99 (247)
..+..+.++++|++++|.++ .++. +....++|++|++++|.+++. ..+..+++|++|++++|.++ .+|..++..+
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence 45677889999999999998 6754 555345999999999999854 57888999999999999998 7777766668
Q ss_pred CCccEEEccCCCccEEEccCCcCCCCCch--hhhcccCcCeeeCcCCcccccCch----hhhCCCCCCEEEccCCcCc
Q 044683 100 FSLEILALSNNSLQGLYLSDNRLFGRIPR--WLGNLLALEDIMMPNNNLQGPIPI----EFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 100 ~~L~~l~l~~n~l~~l~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~n~l~ 171 (247)
++|+.+++++|.++ .+|. .+..+++|++|++++|.++ ..|. .+..+++|+.||+++|.+.
T Consensus 88 ~~L~~L~L~~N~i~-----------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-----------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-----------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-----------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888777777664 3344 6788999999999999998 4455 4888999999999999875
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.6e-15 Score=113.21 Aligned_cols=128 Identities=27% Similarity=0.342 Sum_probs=107.1
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH 84 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 84 (247)
+.++++++.++ .+|..+. +.+++|++++|.++ .+|..+.. +++|++|++++|.++...+.+|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 57899999998 5666554 58999999999998 89976655 89999999999999987778899999999999999
Q ss_pred CcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 85 NQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
|.++ .++...+..+++|+.|++++|.++ ...+..+..+++|+++++++|.+..
T Consensus 88 N~l~-~i~~~~f~~l~~L~~L~L~~N~l~----------~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLR-CIPPRTFDGLKSLRLLSLHGNDIS----------VVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCC-BCCTTTTTTCTTCCEEECCSSCCC----------BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccC-EeCHHHhCCCCCCCEEECCCCCCC----------eeChhhhhcCccccEEEeCCCCeec
Confidence 9999 677666667888887777776665 3345568889999999999999874
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.1e-15 Score=124.76 Aligned_cols=184 Identities=11% Similarity=0.068 Sum_probs=120.0
Q ss_pred CCchhhhh--------cccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCC--
Q 044683 42 IPVEIGTY--------LLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNS-- 111 (247)
Q Consensus 42 ~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~-- 111 (247)
+|...|.+ +++|+++++.. .++.+.+.+|..+++|+.++++.|.+. .++...|..+.++..+....+.
T Consensus 84 I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 84 VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHH
T ss_pred cCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhh
Confidence 44555555 66777777766 566555666777777777777777666 5666656555555544433310
Q ss_pred ------------------------------------------ccEEEccCCcCCCCCchhh-hcccCcCeeeCcCCcccc
Q 044683 112 ------------------------------------------LQGLYLSDNRLFGRIPRWL-GNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 112 ------------------------------------------l~~l~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~ 148 (247)
++.+.+.++ +.......+ ..+++|+.+++.+|.++.
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~ 240 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATT 240 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCE
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcce
Confidence 111111111 000001111 137899999999999997
Q ss_pred cCchhhhCCCCCCEEEccCCcCcCCCCCCCCC---CC-eEeccCCcccccCCCcceeeeecchhcC--CCceEeccCCee
Q 044683 149 PIPIEFCQLELLTILDLSNNTIFGTLPSCFRT---SS-FVKKQDRRTVGKPCGSLGLDILPHLFRR--RPRRLAVEGFDL 222 (247)
Q Consensus 149 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~-~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~~L~l~~n~l 222 (247)
..+.+|.++++|+.+++.+| ++...+.+|.. .. .+++.+ .++...+ .+|.. +|+.+++++|++
T Consensus 241 I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~---------~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF---------GAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT---------TTTTTCTTEEEEEECSSCC
T ss_pred ecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch---------hhhhCCccCCEEEeCCCcc
Confidence 77788999999999999998 77667777763 33 677776 5543222 23455 899999999999
Q ss_pred eecCCccccCCCchhhh
Q 044683 223 VLELPQIVCGLPTCFAL 239 (247)
Q Consensus 223 ~~~~~~~~~~l~~L~~l 239 (247)
+...+.+|.++++|+.+
T Consensus 310 ~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 310 TTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CEECTTTTCTTCCCCEE
T ss_pred CccchhhhcCCcchhhh
Confidence 98888899999998865
No 127
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=8.2e-17 Score=141.07 Aligned_cols=101 Identities=19% Similarity=0.130 Sum_probs=49.1
Q ss_pred hhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCC--------------CccEEEccC-----------CcCCCC
Q 044683 71 FFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSD-----------NRLFGR 125 (247)
Q Consensus 71 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n--------------~l~~l~l~~-----------n~~~~~ 125 (247)
+..+++|++|++++|.+++.....+...+++|+.|++.++ .++.|++++ +.+++.
T Consensus 289 ~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~ 368 (592)
T 3ogk_B 289 FPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368 (592)
T ss_dssp GGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred HhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence 3344455555555555432222222334555666555422 345666662 334322
Q ss_pred Cc-hhhhcccCcCeeeCcCCcccccCchhhhC-CCCCCEEEcc----CCcCc
Q 044683 126 IP-RWLGNLLALEDIMMPNNNLQGPIPIEFCQ-LELLTILDLS----NNTIF 171 (247)
Q Consensus 126 ~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~----~n~l~ 171 (247)
.. .....+++|++|+++.+.+++.....+.. +++|+.|+++ .|.++
T Consensus 369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 11 12234566666666666665444444443 6666666664 44555
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=5.2e-15 Score=109.89 Aligned_cols=133 Identities=22% Similarity=0.277 Sum_probs=106.8
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
.+.++++++.++ .+|..+. +.+++|++++|.++ .++...+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467899999988 4554443 68999999999998 6776665568999999999999997666678899999999999
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP 151 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 151 (247)
+|.++ .++...+..+++|+.+++++|.++ +..+..+..+++|+++++++|.+++..+
T Consensus 85 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~----------~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQ-SLPNGVFDKLTQLKELALDTNQLK----------SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCS----------CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCcc-ccCHHHhhCCcccCEEECcCCcce----------EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99998 777766666888887776666654 3345556789999999999999986543
No 129
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.62 E-value=2.8e-16 Score=137.63 Aligned_cols=209 Identities=14% Similarity=0.029 Sum_probs=105.5
Q ss_pred CccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccc-cCChHhhhcCCCCCEEeccC-----------Cc
Q 044683 19 SPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFN-GSIPSSFFDMKMLKSLDISH-----------NQ 86 (247)
Q Consensus 19 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~-----------n~ 86 (247)
+..+..+++|++|++++|.+++.....+...+++|++|+++ +.+. ..++.....+++|++|++++ +.
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 33344455555555555554432222222335555555555 2222 12222224455566666652 33
Q ss_pred ccccCchhHhhcCCCccEEEccCC---------------CccEEEcc----CCcCCCC-----CchhhhcccCcCeeeCc
Q 044683 87 LTGEIPERMATGCFSLEILALSNN---------------SLQGLYLS----DNRLFGR-----IPRWLGNLLALEDIMMP 142 (247)
Q Consensus 87 ~~~~~~~~~~~~~~~L~~l~l~~n---------------~l~~l~l~----~n~~~~~-----~~~~~~~~~~L~~L~l~ 142 (247)
+++.....+...+++|+.|++..+ +++.|+++ .|.+++. ++..+..+++|++|+++
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 332212222333556666665433 24455554 4455542 23335556777777776
Q ss_pred CCc--ccccCchhhh-CCCCCCEEEccCCcCcCC-CC---CCCCCCCeEeccCCcccccCCCcceeeeecchhcC--CCc
Q 044683 143 NNN--LQGPIPIEFC-QLELLTILDLSNNTIFGT-LP---SCFRTSSFVKKQDRRTVGKPCGSLGLDILPHLFRR--RPR 213 (247)
Q Consensus 143 ~n~--~~~~~~~~l~-~~~~L~~L~l~~n~l~~~-~~---~~~~~~~~L~l~~n~~~~~~~~~~~l~l~p~~~~~--~L~ 213 (247)
.|. +++.....+. .+++|+.|++++|.+++. ++ ........|++++|.+++.. ++..+.. +|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--------~~~~~~~l~~L~ 516 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA--------IAAAVTKLPSLR 516 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH--------HHHHHHHCSSCC
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH--------HHHHHHhcCccC
Confidence 432 4433333333 477788888888877642 12 22233447888888876432 1222222 899
Q ss_pred eEeccCCeeeecCCccc-cCCCch
Q 044683 214 RLAVEGFDLVLELPQIV-CGLPTC 236 (247)
Q Consensus 214 ~L~l~~n~l~~~~~~~~-~~l~~L 236 (247)
+|++++|++++.....+ ..++.+
T Consensus 517 ~L~ls~n~it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 517 YLWVQGYRASMTGQDLMQMARPYW 540 (592)
T ss_dssp EEEEESCBCCTTCTTGGGGCCTTE
T ss_pred eeECcCCcCCHHHHHHHHHhCCCc
Confidence 99999999886533333 344443
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.62 E-value=2.5e-17 Score=124.78 Aligned_cols=151 Identities=25% Similarity=0.270 Sum_probs=101.7
Q ss_pred CCcEEEccCCccccccCc------cccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCC
Q 044683 3 SLKVLDASSNQLTGNISP------NLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKM 76 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 76 (247)
.++.++++.+.+++..|. .+..+++|++|++++|.++ .+| .+.. +++|++|++++|.++ .+|..+..+++
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~-l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSG-MENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHH-HTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cccc-CCCCCEEECCCCCcc-cccchhhcCCc
Confidence 455566666666665555 7777888888888888887 566 4444 778888888888887 56666667778
Q ss_pred CCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCch----
Q 044683 77 LKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPI---- 152 (247)
Q Consensus 77 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---- 152 (247)
|++|++++|.++ .+| . +..+++|+.+++++|.++.+. ....+..+++|++|++++|.+++..|.
T Consensus 95 L~~L~L~~N~l~-~l~-~-~~~l~~L~~L~l~~N~i~~~~---------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~ 162 (198)
T 1ds9_A 95 LEELWISYNQIA-SLS-G-IEKLVNLRVLYMSNNKITNWG---------EIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162 (198)
T ss_dssp CSEEEEEEEECC-CHH-H-HHHHHHSSEEEESEEECCCHH---------HHHHHTTTTTCSEEEECSCHHHHHHHTTTTH
T ss_pred CCEEECcCCcCC-cCC-c-cccCCCCCEEECCCCcCCchh---------HHHHHhcCCCCCEEEecCCccccccccccch
Confidence 888888888887 455 2 333666766665555444210 113567778888888888887755443
Q ss_pred ------hhhCCCCCCEEEccCCcCc
Q 044683 153 ------EFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 153 ------~l~~~~~L~~L~l~~n~l~ 171 (247)
.+..+++|+.|| +|.++
T Consensus 163 ~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 163 SEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHHHhCCCcEEEC--CcccC
Confidence 366778888776 56555
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=7.4e-15 Score=109.00 Aligned_cols=130 Identities=15% Similarity=0.119 Sum_probs=103.6
Q ss_pred CCCCcEEEccCCccccccCccccCCC-CCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCE
Q 044683 1 MTSLKVLDASSNQLTGNISPNLCELV-LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKS 79 (247)
Q Consensus 1 l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 79 (247)
+++|++|++++|.++. ++. +..+. +|++|++++|.+++ + ..+.. +++|++|++++|.++...+..+..+++|++
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK-L-DGFPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE-E-CCCCC-CSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc-c-ccccc-CCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 3578999999999994 444 55554 99999999999984 4 44544 899999999999999655556689999999
Q ss_pred EeccCCcccccCch-hHhhcCCCccEEEccCCCccEEEccCCcCCCCCch----hhhcccCcCeeeCcCCccc
Q 044683 80 LDISHNQLTGEIPE-RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPR----WLGNLLALEDIMMPNNNLQ 147 (247)
Q Consensus 80 L~l~~n~~~~~~~~-~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~ 147 (247)
|++++|.+. .+|. ..+..+++|+.+++++|.++ .+|. .+..+++|++|++++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-----------~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-----------NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-----------GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-----------CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999997 7776 23445888887777777665 2344 4888999999999999876
No 132
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=1.7e-15 Score=132.65 Aligned_cols=167 Identities=17% Similarity=0.129 Sum_probs=96.2
Q ss_pred CCCcEEEccCCccccccCcccc-CCCCCcEEEccCC-ceeecCCchhhhhcccccEEEccCCccccCChHhhh----cCC
Q 044683 2 TSLKVLDASSNQLTGNISPNLC-ELVLLRELYIDNN-DLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFF----DMK 75 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----~l~ 75 (247)
++|++|++++|.+++..+..+. .+++|++|++++| .+++.....+...+++|++|++++|.++...+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4677777777777665555554 4677777777777 444222233333467777777777776644443333 455
Q ss_pred CCCEEeccCCc--ccccCchhHhhcCCCccEEEccCC--------------CccEEEccCCc------------------
Q 044683 76 MLKSLDISHNQ--LTGEIPERMATGCFSLEILALSNN--------------SLQGLYLSDNR------------------ 121 (247)
Q Consensus 76 ~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~l~l~~n--------------~l~~l~l~~n~------------------ 121 (247)
+|++|++++|. +.......+...+++|+.|++++| .++.+++..+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 77777777765 211111122233677777777765 35566543331
Q ss_pred --------CCC----CCchhhhcccCcCeeeCcCCcccccC-chhhhCCCCCCEEEccCC
Q 044683 122 --------LFG----RIPRWLGNLLALEDIMMPNNNLQGPI-PIEFCQLELLTILDLSNN 168 (247)
Q Consensus 122 --------~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n 168 (247)
+.+ .++..+..+++|++|++++|.+++.. ...+..+++|++|++++|
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 111 12333345677888888887766432 233456777888877776
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.6e-14 Score=104.18 Aligned_cols=113 Identities=22% Similarity=0.162 Sum_probs=86.7
Q ss_pred cccccEEEccCCccc-cCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCch
Q 044683 50 LLVFIHLNLSRNAFN-GSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPR 128 (247)
Q Consensus 50 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~ 128 (247)
.+++++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|+.+++++| .+++.+|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~n----------~i~~~~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI--ANLPKLNKLKKLELSDN----------RVSGGLEV 82 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC--TTCCCCTTCCEEECCSS----------CCCSCTHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc--hhhhcCCCCCEEECCCC----------cccchHHH
Confidence 467999999999998 667777888999999999999988 44 23344666665554444 44455777
Q ss_pred hhhcccCcCeeeCcCCccccc-CchhhhCCCCCCEEEccCCcCcCCCC
Q 044683 129 WLGNLLALEDIMMPNNNLQGP-IPIEFCQLELLTILDLSNNTIFGTLP 175 (247)
Q Consensus 129 ~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~ 175 (247)
.+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 777889999999999998853 23778889999999999998885544
No 134
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.53 E-value=1.2e-15 Score=126.40 Aligned_cols=165 Identities=18% Similarity=0.132 Sum_probs=105.1
Q ss_pred CCCcEEEccCCccccccCccccC-----CCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhh----
Q 044683 2 TSLKVLDASSNQLTGNISPNLCE-----LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFF---- 72 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---- 72 (247)
+.|+.|++++|.++......+.. .+.|++|++++|.+++.....+...+++|++|++++|.++......++
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 46788888888887654444333 268888888888887554555555567888888888888754444442
Q ss_pred -cCCCCCEEeccCCcccccCchhH---hhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 73 -DMKMLKSLDISHNQLTGEIPERM---ATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 73 -~l~~L~~L~l~~n~~~~~~~~~~---~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
..++|++|++++|.+++.....+ ....++|+.|++++|.++.... ..++..+...++|++|++++|.+++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~------~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL------ELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH------HHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH------HHHHHHHhcCCCcCeEECCCCCCCH
Confidence 35778888888888762111111 1235556655555554431100 0224455666788888888888874
Q ss_pred c----CchhhhCCCCCCEEEccCCcCcC
Q 044683 149 P----IPIEFCQLELLTILDLSNNTIFG 172 (247)
Q Consensus 149 ~----~~~~l~~~~~L~~L~l~~n~l~~ 172 (247)
. +...+...++|++|++++|.|++
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 3 33455567888888888888763
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=8.5e-15 Score=128.25 Aligned_cols=30 Identities=17% Similarity=0.015 Sum_probs=17.6
Q ss_pred CCceEeccCCeeeecCCc-cccCCCchhhhh
Q 044683 211 RPRRLAVEGFDLVLELPQ-IVCGLPTCFALG 240 (247)
Q Consensus 211 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~ 240 (247)
+|++|++++|.+++.... ....+++|+.|.
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 512 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLW 512 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEE
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEe
Confidence 788888888877544333 233455555543
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.8e-13 Score=101.00 Aligned_cols=106 Identities=25% Similarity=0.271 Sum_probs=60.2
Q ss_pred CcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEc
Q 044683 28 LRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILAL 107 (247)
Q Consensus 28 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l 107 (247)
.+.+++++|.++ .+|..+. +++++|++++|.+++..|..|..+++|++|++++|.++ .++...+..+++|+.|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 355666666665 5555442 45666666666666555555666666666666666666 555555444555554444
Q ss_pred cCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 108 SNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 108 ~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
++|.++ +..+..+..+++|++|++++|.++.
T Consensus 86 ~~N~l~----------~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 86 NDNQLK----------SIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CSSCCC----------CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCccC----------EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 444433 2233445566666666666666653
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=3.8e-13 Score=99.55 Aligned_cols=105 Identities=26% Similarity=0.247 Sum_probs=73.9
Q ss_pred cEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEcc
Q 044683 29 RELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALS 108 (247)
Q Consensus 29 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~ 108 (247)
+.++++++.++ .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.++ .+|...+..+++|+.|+++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 66777777776 7777653 57778888888877666777777788888888888877 6676666557777766655
Q ss_pred CCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 109 NNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 109 ~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
+|.++ +..+..+..+++|++|++++|.+..
T Consensus 90 ~N~l~----------~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 90 DNHLK----------SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SSCCC----------CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCccc----------eeCHHHhccccCCCEEEeCCCCccc
Confidence 55544 2334456777788888888887764
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=4e-13 Score=99.07 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=69.3
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
.+++++++|.++ .+|..+. +.+++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456777777777 3555443 67777788877777 4443333347777778888777776555566777777788887
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCc
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSL 112 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l 112 (247)
+|.++ .++...+..+++|+.+++++|.+
T Consensus 87 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 87 DNQLK-SIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccC-EeCHHHhcCCCCCCEEEeCCCCC
Confidence 77777 66665555566666655555544
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=2.9e-15 Score=113.38 Aligned_cols=137 Identities=26% Similarity=0.293 Sum_probs=99.5
Q ss_pred ccCCCCCcEEEccCCceeecCCc------hhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCchhH
Q 044683 22 LCELVLLRELYIDNNDLRGHIPV------EIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERM 95 (247)
Q Consensus 22 ~~~l~~L~~L~l~~n~i~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 95 (247)
+.....++.++++.+.+.+.+|. .+.. +++|++|++++|.++. +| .+..+++|++|++++|.++ .+|...
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 34455666666666666655554 6655 8899999999999885 56 7888899999999999988 777654
Q ss_pred hhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCc-hhhhCCCCCCEEEccCCcCcCCC
Q 044683 96 ATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIP-IEFCQLELLTILDLSNNTIFGTL 174 (247)
Q Consensus 96 ~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~ 174 (247)
. .+++|+.|++++|.++ + +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..
T Consensus 90 ~-~~~~L~~L~L~~N~l~----------~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 90 A-VADTLEELWISYNQIA----------S-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp H-HHHHCSEEEEEEEECC----------C-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred h-cCCcCCEEECcCCcCC----------c-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 3 3567776666665554 2 34 57788889999999998884322 46788889999999888887554
Q ss_pred C
Q 044683 175 P 175 (247)
Q Consensus 175 ~ 175 (247)
|
T Consensus 157 ~ 157 (198)
T 1ds9_A 157 K 157 (198)
T ss_dssp H
T ss_pred c
Confidence 4
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=6.5e-13 Score=98.32 Aligned_cols=103 Identities=19% Similarity=0.300 Sum_probs=52.8
Q ss_pred cEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccC
Q 044683 5 KVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISH 84 (247)
Q Consensus 5 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 84 (247)
+.+++++|.++ .+|..+. +.+++|++++|.++ .++...+..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 34555555554 3444332 45566666666665 33322222355666666666666543333445556666666666
Q ss_pred CcccccCchhHhhcCCCccEEEccCCCc
Q 044683 85 NQLTGEIPERMATGCFSLEILALSNNSL 112 (247)
Q Consensus 85 n~~~~~~~~~~~~~~~~L~~l~l~~n~l 112 (247)
|.++ .+|...+..+++|+.+++++|.+
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCB
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCCc
Confidence 6655 45544444455555444444433
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=6.5e-13 Score=108.21 Aligned_cols=166 Identities=12% Similarity=0.114 Sum_probs=98.8
Q ss_pred CCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcc-----------------
Q 044683 25 LVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQL----------------- 87 (247)
Q Consensus 25 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~----------------- 87 (247)
+++|+.+++.+ .++ .+++..|.++++|+++++.+|.+....+.+|..+.++..+....+..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 66666666666 565 55666555566666666666666545555555555554444433110
Q ss_pred ---------cccCchhHhhc---CCCccEEEccC--------------CCccEEEccCCcCCCCCchhhhcccCcCeeeC
Q 044683 88 ---------TGEIPERMATG---CFSLEILALSN--------------NSLQGLYLSDNRLFGRIPRWLGNLLALEDIMM 141 (247)
Q Consensus 88 ---------~~~~~~~~~~~---~~~L~~l~l~~--------------n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l 141 (247)
.+.++..++.. ..++..+.+.+ .+++.+++.+|+++...+.+|..+++|+.+++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 00122222211 11222232222 24555555555555444667888888999999
Q ss_pred cCCcccccCchhhhCCCCCC-EEEccCCcCcCCCCCCCCCCC---eEeccCCccccc
Q 044683 142 PNNNLQGPIPIEFCQLELLT-ILDLSNNTIFGTLPSCFRTSS---FVKKQDRRTVGK 194 (247)
Q Consensus 142 ~~n~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~~---~L~l~~n~~~~~ 194 (247)
.+| ++...+.+|.++++|+ .+++.+ .++...+.+|.... .++++.|.++..
T Consensus 258 ~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I 312 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTL 312 (329)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEE
T ss_pred Ccc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCcc
Confidence 887 6656678888898898 898888 67656677776433 788888887754
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.41 E-value=8.8e-12 Score=104.14 Aligned_cols=212 Identities=13% Similarity=0.109 Sum_probs=111.7
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
|+.+.+..+ ++.....+|.++ .|+.+.+.. .++ .++...|..+.+|+.+++..|.++.....+|. ..+|+.+.+.
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred ccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 444444433 333334444442 455555554 344 44444444455566666655555533333443 4555555555
Q ss_pred CCcccccCchhHhhcCCCccEEEccCC------------CccEEEccCCcCCCCCchhhhcccCcCeeeCcCCccc----
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNN------------SLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQ---- 147 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n------------~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~---- 147 (247)
.+ +. .++...|..+++|+.+.+..+ .++.+.+. +++......+|..+++|+.+.+.++.+.
T Consensus 212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 212 VT-LK-EIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp TT-CC-EECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred Cc-hh-eehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcc
Confidence 33 44 455555555556666655443 23344442 2233233455666677777777666543
Q ss_pred -ccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCC-C--eEeccCCcccccCCCcceeeeecchhcC-CCceEeccCCee
Q 044683 148 -GPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTS-S--FVKKQDRRTVGKPCGSLGLDILPHLFRR-RPRRLAVEGFDL 222 (247)
Q Consensus 148 -~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~-~--~L~l~~n~~~~~~~~~~~l~l~p~~~~~-~L~~L~l~~n~l 222 (247)
...+.+|.++++|+.+++.+ .++.....+|... + .+.+..+ ++.. -+.+|.. +|+.+++++|.+
T Consensus 289 ~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I---------~~~aF~~~~L~~l~l~~n~~ 357 (401)
T 4fdw_A 289 AMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI---------NFSAFNNTGIKEVKVEGTTP 357 (401)
T ss_dssp CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE---------CTTSSSSSCCCEEEECCSSC
T ss_pred cEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE---------cHHhCCCCCCCEEEEcCCCC
Confidence 23446666777777777763 3554445555432 2 5555433 2211 1223455 888899988877
Q ss_pred eecCCccccCCC
Q 044683 223 VLELPQIVCGLP 234 (247)
Q Consensus 223 ~~~~~~~~~~l~ 234 (247)
.......|.+++
T Consensus 358 ~~l~~~~F~~~~ 369 (401)
T 4fdw_A 358 PQVFEKVWYGFP 369 (401)
T ss_dssp CBCCCSSCCCSC
T ss_pred cccccccccCCC
Confidence 766666777664
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.32 E-value=5.8e-11 Score=99.18 Aligned_cols=203 Identities=13% Similarity=0.069 Sum_probs=141.4
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEec
Q 044683 3 SLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDI 82 (247)
Q Consensus 3 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 82 (247)
+|+.+.+.. .++.....+|.+|.+|+.+++.+|.++ .++...|. ..+|+.+.+..+ ++.+...+|..+++|+.+.+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 467777775 566566678888888999999888887 77777776 578888888744 55566677888888888888
Q ss_pred cCCcccccCchhHhhcCCCccEEEccCC-------------CccEEEccCCcCC-----CCCchhhhcccCcCeeeCcCC
Q 044683 83 SHNQLTGEIPERMATGCFSLEILALSNN-------------SLQGLYLSDNRLF-----GRIPRWLGNLLALEDIMMPNN 144 (247)
Q Consensus 83 ~~n~~~~~~~~~~~~~~~~L~~l~l~~n-------------~l~~l~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n 144 (247)
..+ ++ .++...|.. .+|+.+.+..+ +|+.+.+.++.+. .....+|..+++|+.+.+..
T Consensus 234 ~~~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 234 PEN-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp CTT-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred CCC-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 764 44 566666654 56666665433 4556666655443 23456788999999999984
Q ss_pred cccccCchhhhCCCCCCEEEccCCcCcCCCCCCCCCCC--eEeccCCcccccCCCcceeeeecchhcC---CCceEeccC
Q 044683 145 NLQGPIPIEFCQLELLTILDLSNNTIFGTLPSCFRTSS--FVKKQDRRTVGKPCGSLGLDILPHLFRR---RPRRLAVEG 219 (247)
Q Consensus 145 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~l~~n~~~~~~~~~~~l~l~p~~~~~---~L~~L~l~~ 219 (247)
.++.....+|.++++|+.+.+..| ++.....+|...+ .+++++|......... |.. .++.+.+..
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~~~~l~~~~---------F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTGIKEVKVEGTTPPQVFEKV---------WYGFPDDITVIRVPA 379 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSCCCEEEECCSSCCBCCCSS---------CCCSCTTCCEEEECG
T ss_pred ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCCCCEEEEcCCCCccccccc---------ccCCCCCccEEEeCH
Confidence 477566788999999999999665 6656667775334 8899888765432221 222 577787777
Q ss_pred Ceee
Q 044683 220 FDLV 223 (247)
Q Consensus 220 n~l~ 223 (247)
+.+.
T Consensus 380 ~~~~ 383 (401)
T 4fdw_A 380 ESVE 383 (401)
T ss_dssp GGHH
T ss_pred HHHH
Confidence 6543
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=6.6e-12 Score=102.88 Aligned_cols=103 Identities=26% Similarity=0.329 Sum_probs=85.6
Q ss_pred EEEccCC-ccccccCccccCCCCCcEEEccC-CceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 6 VLDASSN-QLTGNISPNLCELVLLRELYIDN-NDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 6 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
.++.+++ .++ .+|. +..+.+|++|+|++ |.++ .++...+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 5688887 888 5777 99999999999996 9998 5665555559999999999999998888899999999999999
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCcc
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQ 113 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~ 113 (247)
+|.++ .+|...+..++ |+.|++.+|.++
T Consensus 89 ~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 99998 78877776444 777777777654
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=9e-13 Score=109.11 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=19.1
Q ss_pred cCcCeeeCcCCccccc----CchhhhCCCCCCEEEccCCcCc
Q 044683 134 LALEDIMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 134 ~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~ 171 (247)
++|++|++++|.++.. ++..+...++|++|++++|.++
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 4455555555555421 2233344555555555555554
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=5.7e-11 Score=97.31 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=81.7
Q ss_pred cEEEccCC-ceeecCCchhhhhcccccEEEccC-CccccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEE
Q 044683 29 RELYIDNN-DLRGHIPVEIGTYLLVFIHLNLSR-NAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILA 106 (247)
Q Consensus 29 ~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~ 106 (247)
..++++++ .++ .+|. +.. +.+|++|++++ |.++...+..|..+++|++|++++|.++ .++...+..+++|+.|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCC-ccCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEe
Confidence 45688887 888 8888 655 78899999996 9999777788999999999999999998 56666666788888777
Q ss_pred ccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccc
Q 044683 107 LSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQG 148 (247)
Q Consensus 107 l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 148 (247)
+++|.|+. ..+..+..++ |+.|++.+|.+..
T Consensus 87 l~~N~l~~----------~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALES----------LSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSC----------CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccce----------eCHHHcccCC-ceEEEeeCCCccC
Confidence 77766652 2344444444 9999999998874
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=2.1e-09 Score=88.37 Aligned_cols=165 Identities=16% Similarity=0.117 Sum_probs=77.3
Q ss_pred ccCCCCCcEEEccCCcee---------ecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCc
Q 044683 22 LCELVLLRELYIDNNDLR---------GHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIP 92 (247)
Q Consensus 22 ~~~l~~L~~L~l~~n~i~---------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 92 (247)
...+++|+.|.+...... +.+.. +...+|+|+.|.+++|.-. ..+. + .+++|++|++..+.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 445566777766543211 01222 2233567777777666211 1222 2 36677777777666542222
Q ss_pred hhHh-hcCCCccEEEccCCCccEEEccCCcCCCCCchhh--hcccCcCeeeCcCCcccccCchhhh---CCCCCCEEEcc
Q 044683 93 ERMA-TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWL--GNLLALEDIMMPNNNLQGPIPIEFC---QLELLTILDLS 166 (247)
Q Consensus 93 ~~~~-~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~l~---~~~~L~~L~l~ 166 (247)
..+. ..+|+|+.|++..+.-.. .....+. .+...+ ..+++|++|++.+|.+.+..+..+. .+++|++|+++
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~--~~~~~~~-~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDY--GFDGDMN-VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGG--TCCSCGG-GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHccCCCCcEEEEecccccc--ccchhHH-HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 2222 136667766543110000 0000000 011111 2356777777777766543332332 35667777777
Q ss_pred CCcCcCC----CCCC---CCCCCeEeccCCcccc
Q 044683 167 NNTIFGT----LPSC---FRTSSFVKKQDRRTVG 193 (247)
Q Consensus 167 ~n~l~~~----~~~~---~~~~~~L~l~~n~~~~ 193 (247)
.|.+++. ++.. +.....|++++|.++.
T Consensus 288 ~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp SSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 7776642 1211 2233467777776654
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=4.4e-07 Score=75.46 Aligned_cols=103 Identities=11% Similarity=0.068 Sum_probs=51.7
Q ss_pred CCCcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCc-------------------
Q 044683 2 TSLKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA------------------- 62 (247)
Q Consensus 2 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~------------------- 62 (247)
.+|+.+.+..+ ++.....+|.++.+|+.+++..+ ++ .++...+.++.+|+.+.+..+-
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence 45666666532 55444566666777777776543 43 4444444445555444332210
Q ss_pred --cccCChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccC
Q 044683 63 --FNGSIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSN 109 (247)
Q Consensus 63 --l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~ 109 (247)
.......+|..+.+|+.+.+..+. . .++...|..+.+|+.+.+..
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCT
T ss_pred ccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCC
Confidence 011123345555666666665432 2 34555555555555555543
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.65 E-value=4.7e-08 Score=80.33 Aligned_cols=176 Identities=13% Similarity=0.133 Sum_probs=111.3
Q ss_pred CCCCcEEEccCCccc---------cccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhh
Q 044683 1 MTSLKVLDASSNQLT---------GNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSF 71 (247)
Q Consensus 1 l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 71 (247)
+++|+.|.+...... +.+...+..+++|+.|.++++.-. .++. + . +++|++|++..+.++......+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-P-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-B-CTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-c-CCCCcEEEEecCCCChHHHHHH
Confidence 367899988665321 123355677899999999987422 4444 2 3 7899999999998875444445
Q ss_pred h--cCCCCCEEeccC--Cccccc-----CchhHh-hcCCCccEEEccCCCccEEEccCCcCCCCCchhh---hcccCcCe
Q 044683 72 F--DMKMLKSLDISH--NQLTGE-----IPERMA-TGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWL---GNLLALED 138 (247)
Q Consensus 72 ~--~l~~L~~L~l~~--n~~~~~-----~~~~~~-~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~---~~~~~L~~ 138 (247)
+ .+++|++|+++. +...+. +...+. ..+++|+.|.+.+| .+.+..+..+ ..+++|++
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~----------~i~~~~~~~la~a~~~~~L~~ 283 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA----------EEQNVVVEMFLESDILPQLET 283 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC----------TTHHHHHHHHHHCSSGGGCSE
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC----------CCchHHHHHHHhCccCCCCCE
Confidence 4 789999999864 221111 111110 12456666655544 4433333333 25789999
Q ss_pred eeCcCCccccc----CchhhhCCCCCCEEEccCCcCcCCCCCCCCC--CCeEeccCCc
Q 044683 139 IMMPNNNLQGP----IPIEFCQLELLTILDLSNNTIFGTLPSCFRT--SSFVKKQDRR 190 (247)
Q Consensus 139 L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~L~l~~n~ 190 (247)
|+++.|.+++. ++..+..+++|+.|++++|.++......+.. -..++++++.
T Consensus 284 LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp EECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred EECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 99999999854 2334456799999999999987443333321 2267888776
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=2.2e-08 Score=74.51 Aligned_cols=119 Identities=14% Similarity=0.029 Sum_probs=78.5
Q ss_pred CccccCCCCCcEEEccCC-ceeecCCchhhhh---cccccEEEccCCccccC----ChHhhhcCCCCCEEeccCCccccc
Q 044683 19 SPNLCELVLLRELYIDNN-DLRGHIPVEIGTY---LLVFIHLNLSRNAFNGS----IPSSFFDMKMLKSLDISHNQLTGE 90 (247)
Q Consensus 19 ~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~---l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 90 (247)
...+...+.|++|++++| .+.+.....+... .++|++|++++|.++.. +...+...++|++|++++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 445667888999999998 8874333333322 46799999999998743 344455668899999999998743
Q ss_pred CchhHhh---cCCCccEEEccCCCccEEEc--cCCcCCCC----CchhhhcccCcCeeeCcCCccc
Q 044683 91 IPERMAT---GCFSLEILALSNNSLQGLYL--SDNRLFGR----IPRWLGNLLALEDIMMPNNNLQ 147 (247)
Q Consensus 91 ~~~~~~~---~~~~L~~l~l~~n~l~~l~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 147 (247)
-...+.. ..++|+ +|++ ++|.++.. +...+...+.|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~----------~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLI----------ELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCC----------EEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCce----------EEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2222222 233444 5555 45555543 3345566689999999999886
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.60 E-value=1.5e-08 Score=75.44 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=73.0
Q ss_pred cccccEEEccCC-ccccC----ChHhhhcCCCCCEEeccCCcccccCchhHhh---cCCCccEEEccCCCccEEEccCCc
Q 044683 50 LLVFIHLNLSRN-AFNGS----IPSSFFDMKMLKSLDISHNQLTGEIPERMAT---GCFSLEILALSNNSLQGLYLSDNR 121 (247)
Q Consensus 50 l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~L~~l~l~~n~l~~l~l~~n~ 121 (247)
.++|++|++++| .++.. +...+...++|++|++++|.+.+.....+.. ..++|+ +|++++|.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~----------~L~L~~N~ 104 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK----------SLNVESNF 104 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCC----------EEECCSSC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcC----------EEECcCCc
Confidence 567899999998 87642 3445556788999999999886322222211 234455 44444444
Q ss_pred CCCC----CchhhhcccCcCeeeC--cCCccccc----CchhhhCCCCCCEEEccCCcCc
Q 044683 122 LFGR----IPRWLGNLLALEDIMM--PNNNLQGP----IPIEFCQLELLTILDLSNNTIF 171 (247)
Q Consensus 122 ~~~~----~~~~~~~~~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~ 171 (247)
+++. +...+...+.|++|++ ++|.++.. +...+...++|++|++++|.+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4432 3455666778888888 77888743 3455666788888888888775
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.49 E-value=5.2e-06 Score=68.96 Aligned_cols=99 Identities=16% Similarity=0.266 Sum_probs=52.8
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCc---eeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEE
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNND---LRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSL 80 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 80 (247)
|+.+.+... ++.....+|.++.+|+.+.+..+. ++ .+....|..+.+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 556666543 444556677777778877776542 44 455555555556665555433 232334455566666666
Q ss_pred eccCCcccccCchhHhhcCCCccEEEc
Q 044683 81 DISHNQLTGEIPERMATGCFSLEILAL 107 (247)
Q Consensus 81 ~l~~n~~~~~~~~~~~~~~~~L~~l~l 107 (247)
.+..+ +. .++...+..+..|+.+.+
T Consensus 143 ~lp~~-~~-~I~~~~F~~c~~L~~i~~ 167 (394)
T 4gt6_A 143 TIPEG-VT-SVADGMFSYCYSLHTVTL 167 (394)
T ss_dssp ECCTT-CC-EECTTTTTTCTTCCEEEC
T ss_pred cccce-ee-eecccceecccccccccc
Confidence 66433 22 334444444444444444
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=1.3e-07 Score=69.28 Aligned_cols=58 Identities=7% Similarity=0.028 Sum_probs=26.1
Q ss_pred CCcEEEccCCceeecCCchhhhhcccccEEEccCCc-cccCChHhhhcC----CCCCEEeccCC
Q 044683 27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNA-FNGSIPSSFFDM----KMLKSLDISHN 85 (247)
Q Consensus 27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n 85 (247)
.|+.|+++++.+++..-..+. .+++|++|++++|. ++...-..++.+ ++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 455555555555433333332 25555555555552 333222233332 24555555554
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.43 E-value=3.2e-06 Score=70.25 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=40.2
Q ss_pred cCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCC
Q 044683 18 ISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHN 85 (247)
Q Consensus 18 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 85 (247)
...+|.++.+|+.+.+.++. . .++...+..+.+|+.+.+..+ ++.....+|..+..|+.+.+..+
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred chhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 34567777788888876553 3 455666666777777777655 33344556666666666555443
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.41 E-value=1.6e-07 Score=73.60 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=27.6
Q ss_pred hcccccEEEccCCcccc--CChHhhhcCCCCCEEeccCCccc
Q 044683 49 YLLVFIHLNLSRNAFNG--SIPSSFFDMKMLKSLDISHNQLT 88 (247)
Q Consensus 49 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~ 88 (247)
.+++|++|++++|.+++ .++..+..+++|+.|++++|.++
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 36677777777777765 23455567777777777777776
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=4.9e-07 Score=70.91 Aligned_cols=81 Identities=21% Similarity=0.172 Sum_probs=61.4
Q ss_pred cCCCCCcEEEccCCceee--cCCchhhhhcccccEEEccCCccccCChHhhhcCC--CCCEEeccCCcccccCch-----
Q 044683 23 CELVLLRELYIDNNDLRG--HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMK--MLKSLDISHNQLTGEIPE----- 93 (247)
Q Consensus 23 ~~l~~L~~L~l~~n~i~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~----- 93 (247)
..++.|+.|++++|.+++ .++..+. .+++|+.|++++|.+.+. ..+..+. +|++|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 457899999999999984 3334443 489999999999999854 3344444 899999999999865652
Q ss_pred -hHhhcCCCccEEE
Q 044683 94 -RMATGCFSLEILA 106 (247)
Q Consensus 94 -~~~~~~~~L~~l~ 106 (247)
.+...+|+|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 3455689998886
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.13 E-value=3.8e-05 Score=63.28 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=15.7
Q ss_pred hhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEc
Q 044683 129 WLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDL 165 (247)
Q Consensus 129 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 165 (247)
+|..+.+|+.+.+..+ ++.....+|.++.+|+.+.+
T Consensus 305 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEE
Confidence 3444445555544332 32222344444455544444
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=3e-05 Score=63.92 Aligned_cols=138 Identities=17% Similarity=0.123 Sum_probs=93.9
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 4 LKVLDASSNQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 4 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
++.+.+..+ +......++..+..|+.+.+..+ ++ .+....+..+.+|+.+.+..+ +......+|..+.+|+.+.+.
T Consensus 219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEEC
T ss_pred cceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccccccc
Confidence 444444332 33344556677788888888665 55 566666666778888888654 443555678888899999988
Q ss_pred CCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCC
Q 044683 84 HNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLE 158 (247)
Q Consensus 84 ~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 158 (247)
++.+. .++...|.++.+|+.+.+..+ ++.+ ...+|..+.+|+.+.+..+ ++..-..+|.+++
T Consensus 295 ~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I----------~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 295 NSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTI----------QVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTTCC-EECTTTTTTCTTCCEEECCTT-CCEE----------CTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccc-eehhhhhcCCCCCCEEEcCcc-ccEE----------HHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 88787 788888888888888877643 4443 2567888999999988654 4434456666554
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.99 E-value=3.2e-05 Score=64.16 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=97.0
Q ss_pred cccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCcccccCch
Q 044683 14 LTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLTGEIPE 93 (247)
Q Consensus 14 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 93 (247)
++.....+|..+..|+.+.+..+.. .+....+..+.+|+.+.+. +.++.....+|..+.+|+.+.+..+ ++ .+..
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~ 327 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILD 327 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECT
T ss_pred ceEcccceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehH
Confidence 3434567788999999999987654 4556666668899999996 4455466778999999999999765 55 7888
Q ss_pred hHhhcCCCccEEEccCCCccEEEccCCcCCCCCchhhhcccCcCeeeCcCCcccccCchhhhCCCCCCEEEccCCcC
Q 044683 94 RMATGCFSLEILALSNNSLQGLYLSDNRLFGRIPRWLGNLLALEDIMMPNNNLQGPIPIEFCQLELLTILDLSNNTI 170 (247)
Q Consensus 94 ~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 170 (247)
..|.++.+|+.+.+..+ ++. ....+|..+++|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~----------I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTK----------IPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCB----------CCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred hHhhCCCCCCEEEECcc-cCE----------EhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 88888999998887543 332 236778999999999999886542 4567788888888776654
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=9.4e-06 Score=59.33 Aligned_cols=88 Identities=6% Similarity=0.043 Sum_probs=57.4
Q ss_pred ccccEEEccCCccccCChHhhhcCCCCCEEeccCCc-ccccCchhHhhc---CCCccEEEccCCCccEEEccCCcCCCCC
Q 044683 51 LVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQ-LTGEIPERMATG---CFSLEILALSNNSLQGLYLSDNRLFGRI 126 (247)
Q Consensus 51 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~---~~~L~~l~l~~n~l~~l~l~~n~~~~~~ 126 (247)
..|++|+++++.++...-..+..+++|++|++++|. +++..-..+... .++|+.|++++|. ++++..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~---------~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG---------NVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT---------TCCHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC---------cCCHHH
Confidence 368899999998876656667788999999999884 553222222210 1245555544432 244444
Q ss_pred chhhhcccCcCeeeCcCCc-cc
Q 044683 127 PRWLGNLLALEDIMMPNNN-LQ 147 (247)
Q Consensus 127 ~~~~~~~~~L~~L~l~~n~-~~ 147 (247)
-..+..+++|++|++++|. ++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 5567778899999999885 44
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=8.8e-05 Score=55.20 Aligned_cols=119 Identities=14% Similarity=0.090 Sum_probs=66.7
Q ss_pred ccCCCCCcEEEccCC-ceeecCCchhhhh---cccccEEEccCCccccC----ChHhhhcCCCCCEEeccCCcccccCch
Q 044683 22 LCELVLLRELYIDNN-DLRGHIPVEIGTY---LLVFIHLNLSRNAFNGS----IPSSFFDMKMLKSLDISHNQLTGEIPE 93 (247)
Q Consensus 22 ~~~l~~L~~L~l~~n-~i~~~~~~~~~~~---l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~ 93 (247)
+..-+.|++|+++++ .+.+.....+... -..|++|++++|.++.. +...+..-..|++|+++.|.+.+.-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344577888888875 6653332333322 34688888888888743 334444557888999999888743333
Q ss_pred hHhhcCCCccEEEccCCCccEEEccCC---cCCC----CCchhhhcccCcCeeeCcCCccc
Q 044683 94 RMATGCFSLEILALSNNSLQGLYLSDN---RLFG----RIPRWLGNLLALEDIMMPNNNLQ 147 (247)
Q Consensus 94 ~~~~~~~~L~~l~l~~n~l~~l~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~~~ 147 (247)
.+.+.+.. +..|++|+++++ .+.. .+.+.+..-+.|+.|+++.|.+.
T Consensus 117 ala~aL~~-------N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLV-------TQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTT-------TCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhh-------CCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 33332211 112445555433 2222 12334455566777777666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=6e-05 Score=56.10 Aligned_cols=113 Identities=13% Similarity=0.119 Sum_probs=53.0
Q ss_pred ccccEEEccCC-cccc----CChHhhhcCCCCCEEeccCCcccccCchhHhhcCCCccEEEccCCCccEEEccCCcCCCC
Q 044683 51 LVFIHLNLSRN-AFNG----SIPSSFFDMKMLKSLDISHNQLTGEIPERMATGCFSLEILALSNNSLQGLYLSDNRLFGR 125 (247)
Q Consensus 51 ~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~l~~n~l~~l~l~~n~~~~~ 125 (247)
+.|++|+++++ .+.. .+..++..-+.|+.|++++|.+.+.....+...+ + .+..|+.|++++|.|++.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL---~----~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI---E----TSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH---H----HCSSCCEEECCSSBCCHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH---h----cCCccCeEecCCCcCCHH
Confidence 45777777764 5542 2233444456677777777766522111111100 0 112233444444444432
Q ss_pred ----CchhhhcccCcCeeeCcCC---cccc----cCchhhhCCCCCCEEEccCCcC
Q 044683 126 ----IPRWLGNLLALEDIMMPNN---NLQG----PIPIEFCQLELLTILDLSNNTI 170 (247)
Q Consensus 126 ----~~~~~~~~~~L~~L~l~~n---~~~~----~~~~~l~~~~~L~~L~l~~n~l 170 (247)
+.+.+..-+.|+.|+|++| .+.. .+.+.+...+.|+.|+++.|.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2223344455666666543 2221 1334555556666666655543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.25 E-value=0.00067 Score=47.00 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=33.6
Q ss_pred EEEccCCcee-ecCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEeccCCccc
Q 044683 30 ELYIDNNDLR-GHIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDISHNQLT 88 (247)
Q Consensus 30 ~L~l~~n~i~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 88 (247)
.++.+++.++ ..+|..+ .+++++|+|++|.++...+..|..+++|++|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5555665553 2455443 235667777777776555555666667777777776654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.10 E-value=0.00086 Score=46.43 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=19.1
Q ss_pred CCcEEEccCCceeecCCchhhhhcccccEEEccCCcc
Q 044683 27 LLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRNAF 63 (247)
Q Consensus 27 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l 63 (247)
+++.|+|++|.|+ .++...+..+++|++|+|.+|.+
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3555555555555 55555544455555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=65.82 E-value=6.1 Score=25.36 Aligned_cols=42 Identities=12% Similarity=0.038 Sum_probs=17.7
Q ss_pred cCCchhhhhcccccEEEccCCccccCChHhhhcCCCCCEEecc
Q 044683 41 HIPVEIGTYLLVFIHLNLSRNAFNGSIPSSFFDMKMLKSLDIS 83 (247)
Q Consensus 41 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 83 (247)
.+....|.++.+|+.+.+-.+ ++.+...+|..+.+|+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 333344444444444444332 222333444444445444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.37 E-value=16 Score=23.30 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=38.5
Q ss_pred CccccccCccccCCCCCcEEEccCCceeecCCchhhhhcccccEEEccCC
Q 044683 12 NQLTGNISPNLCELVLLRELYIDNNDLRGHIPVEIGTYLLVFIHLNLSRN 61 (247)
Q Consensus 12 n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n 61 (247)
..++.....+|.++..|+.+.+-.+ ++ .+....|..+.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence 3566666788999999999999876 55 677777777999999998765
Done!