Query 044684
Match_columns 545
No_of_seqs 229 out of 1061
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02258 9-cis-epoxycarotenoid 100.0 6E-145 1E-149 1193.3 42.5 520 14-544 67-590 (590)
2 PLN02491 carotenoid 9,10(9',10 100.0 6E-135 1E-139 1111.3 41.1 500 24-544 20-543 (545)
3 COG3670 Lignostilbene-alpha,be 100.0 3E-116 7E-121 910.6 29.6 448 61-538 21-489 (490)
4 PF03055 RPE65: Retinal pigmen 100.0 2E-110 5E-115 913.1 26.8 455 63-537 1-486 (486)
5 PLN02969 9-cis-epoxycarotenoid 100.0 4E-104 9E-109 878.5 35.8 455 61-537 59-610 (610)
6 KOG1285 Beta, beta-carotene 15 100.0 4.1E-88 8.9E-93 733.2 29.1 512 20-544 67-582 (582)
7 KOG1285 Beta, beta-carotene 15 100.0 3.5E-32 7.7E-37 296.5 22.2 343 78-438 37-414 (582)
8 PF06433 Me-amine-dh_H: Methyl 62.0 2.2E+02 0.0048 30.3 15.2 173 314-525 106-290 (342)
9 PF02239 Cytochrom_D1: Cytochr 58.6 48 0.001 35.4 8.9 75 428-523 45-119 (369)
10 PF10282 Lactonase: Lactonase, 49.4 37 0.00081 35.6 6.3 99 194-301 47-162 (345)
11 PF02736 Myosin_N: Myosin N-te 29.7 51 0.0011 23.8 2.4 31 473-512 4-34 (42)
12 COG3823 Glutamine cyclotransfe 28.1 28 0.0006 34.6 1.0 37 190-229 95-132 (262)
13 PF02239 Cytochrom_D1: Cytochr 27.6 96 0.0021 33.1 5.2 87 418-524 272-359 (369)
14 COG2706 3-carboxymuconate cycl 23.4 9.3E+02 0.02 25.7 19.7 100 195-303 51-165 (346)
15 PRK00756 acyltransferase NodA; 22.0 65 0.0014 30.7 2.2 32 67-98 162-195 (196)
16 PF13360 PQQ_2: PQQ-like domai 21.5 3E+02 0.0066 26.2 7.0 64 447-525 4-67 (238)
No 1
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=100.00 E-value=6.3e-145 Score=1193.34 Aligned_cols=520 Identities=68% Similarity=1.171 Sum_probs=491.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCceeeecccccCCCCCccccccccccCCCCcceeee
Q 044684 14 EPVRPKYPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYV 93 (545)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~g~f~pv~E~~~~~~l~V~G~iP~~L~Gt~~ 93 (545)
.|..-+.+++||+.|++|+++||++|+.|++++|+.+||++++||+++++|||+|++||++..+++|+|+||+||+|+||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~ 146 (590)
T PLN02258 67 PPAATTQTPQLNPLQRAAAAALDAVESALVSHLERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYV 146 (590)
T ss_pred cccccCCccccCcchhhHHHHHHHHHHHHhhhccccCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEE
Confidence 34445577889999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred ecCCCCCCCCCCcCccccCCCcEEEEEeCCCCceeeeeecccchhhhHHHhcCCCCCCccccccccchhHHHHHHHHHhh
Q 044684 94 RNGANPMFVPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARA 173 (545)
Q Consensus 94 RNGPnp~~~~~~~~H~FDGdGMlh~~~~~~~G~a~y~~R~v~T~~~~~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~ 173 (545)
||||||+|++.+++||||||||||+|+|++ |+|+|+||||||++|++|+++||++|++.||+++++++++|..++++|.
T Consensus 147 RNGPnp~f~p~~~~H~FDGDGMvhav~f~d-G~a~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~ 225 (590)
T PLN02258 147 RNGANPLFEPVAGHHLFDGDGMVHAVRIGN-GSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARG 225 (590)
T ss_pred EeCCCCCCCCCCCCccccCCceEEEEEECC-CeEEEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhccc
Confidence 999999999888899999999999999999 9999999999999999999999999998899999889999998888898
Q ss_pred ccccccCCCCceeeeeeeEEEcCeeeeccCCCCCceEEEccCCCceeeeecccCCCCccccccCCCCCCCCCceeeEeec
Q 044684 174 GAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYN 253 (545)
Q Consensus 174 ~~g~~~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~~i~p~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~tGel~~~~~~ 253 (545)
..+.++..+++|+|||+|++|+||||||||+|+||++++++++||||+|++||+|+|..+||||||+||.|||||+|+|+
T Consensus 226 ~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~ 305 (590)
T PLN02258 226 LFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYD 305 (590)
T ss_pred cccccccccccCCCceeEEEECCEEEEEEcCCCceEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEe
Confidence 77888877788999999999999999999999999999888679999999999999988999999999999999999999
Q ss_pred cccccceeeEEeecCCCCCCCCceeecCCCCceeeeeeeecCeEEecCceeEEeecccccCCCceEecCCCcceeccccC
Q 044684 254 VVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSK 333 (545)
Q Consensus 254 ~~~~p~l~~~~~~~~~~G~~~~~~~i~~~~p~~~HDfaiTeny~V~~~~pl~~~~~~m~~g~~~~~~d~~~~tr~~vipR 333 (545)
...+|+++|+++ |++|++.+.++|+++.++|||||||||||+||+++|+++++.+|+.|++++.|++++++|||||||
T Consensus 306 ~~~~p~l~~~~~--d~~G~~~~~~~i~lp~p~~~HDFaiTenY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgVipR 383 (590)
T PLN02258 306 VVKKPYLKYFRF--SPDGEKSPDVEIPLDQPTMMHDFAITENFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPK 383 (590)
T ss_pred ccCCCcEEEEEE--CCCCCEEeeEEeeCCCCccccceeccCceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEEEEC
Confidence 777899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEeCCceeeeeeccccccCCCCCcccEEEEcccCCCCCcccccCCCcccchhheeeecccCCccccccccc
Q 044684 334 NDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVS 413 (545)
Q Consensus 334 ~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~~~~vvv~~~~~~~~~~~~~~~~~~l~~~l~r~~ldl~tg~~~~~~l~~ 413 (545)
++++.++++||++|+||+||++|||||+++|+ ||+|+||+.+.+.+++...+.++++|+||||||+||+++++.++
T Consensus 384 ~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~---VVvd~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~- 459 (590)
T PLN02258 384 NATDASEIQWVEVPDCFCFHLWNAWEEPETDE---VVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPII- 459 (590)
T ss_pred CCCCCCceEEEecCCcEEEecccccccCCCCe---EEEEEecccChhhhcccccccccceEEEEEEECCCCceeeeEee-
Confidence 98767789999999999999999999854677 99999999887777776656778999999999999999988887
Q ss_pred c---cccccccccccccCcccceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCC-CCCC
Q 044684 414 G---MNLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSG-REDE 489 (545)
Q Consensus 414 ~---~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~-~EDD 489 (545)
+ .++|||+||++|.||+|||+|+++.+++++++||+|+|+++|+++.|++|+++|+|||+||||++ +. +|||
T Consensus 460 ~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~~----~~~~EDD 535 (590)
T PLN02258 460 SGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRGS----GSEAEDD 535 (590)
T ss_pred cCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEEEECCCCcEEEEECCCCccccCCEeccCCC----CCcccCC
Confidence 4 79999999999999999999999988888999999999999999999999999999999999997 44 5999
Q ss_pred ceEEEEEeccccccceeEEEecccceEEEEEecCCccccccceeecCchhhhccc
Q 044684 490 GFIMGFVRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQV 544 (545)
Q Consensus 490 G~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~LP~rvP~GFHG~fv~~~~l~~~~ 544 (545)
||||++|||+++++|+|+||||++|+++|+|+||+||||||||+|++++||++|+
T Consensus 536 Gylls~V~d~~~~~SeL~IlDA~~l~~VArv~LP~rVP~GFHG~wv~~~~l~~q~ 590 (590)
T PLN02258 536 GYILAFVHDEEKGKSELQVVNAVNLELEATVKLPSRVPYGFHGTFISAEDLLKQA 590 (590)
T ss_pred cEEEEEEEECCCCceEEEEEeCCCCcccEEEECCCCCCCcccccccCHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999999994
No 2
>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase
Probab=100.00 E-value=6.1e-135 Score=1111.29 Aligned_cols=500 Identities=42% Similarity=0.747 Sum_probs=457.3
Q ss_pred CCHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCceeeecccccCC-CCCccccccccccCCCCcceeeeecCCCCCCC
Q 044684 24 LNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQ-ECPVHHGLQVVGRIPDCLRGVYVRNGANPMFV 102 (545)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~g~f~pv~-E~~~~~~l~V~G~iP~~L~Gt~~RNGPnp~~~ 102 (545)
-|+.|+++++++|++|+.|+++ |++++||+++|+|||+|+. |.++..+++|+|+||+||+|+||||||||+|.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~g~fapv~~E~~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~ 93 (545)
T PLN02491 20 PRPSKGLTSKAVDLLEKLIVKL------MHDASQPLHYLSGNFAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFS 93 (545)
T ss_pred CchhhhhhHHHHHHHHHHHHhh------ccCCCCCcccccCCCcCccccCCcccCcEEEeeCCCcCCeEEEEeCCCCCCC
Confidence 4688999999999999999998 5889999999999999995 44557789999999999999999999999999
Q ss_pred CCCcCccccCCCcEEEEEeCCCCceeeeeecccchhhhHHHhcCCCCCCccccccccchhHHHHHHHHHhhccccccCCC
Q 044684 103 PSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSR 182 (545)
Q Consensus 103 ~~~~~H~FDGdGMlh~~~~~~~G~a~y~~R~v~T~~~~~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~~~g~~~~~~ 182 (545)
+..++||||||||||+|+|++ |+|+|+||||||++|++|+++|+++|++ ++.+++..|+++..++..|...+..+...
T Consensus 94 ~~~~~H~FDGDGMlha~~f~~-G~a~y~~RfVrT~~~~~E~~ag~~~~~~-~~~~~g~~g~~~~~~~~~r~~~~~~~~~~ 171 (545)
T PLN02491 94 PVAGYHWFDGDGMIHGMRIKD-GKATYVSRYVKTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQQLRAKLKVLDFSY 171 (545)
T ss_pred CCCCCccccCCccEEEEEEcC-CcEEEEeeeecccchhhhhhcCcccccc-cccccccchhhhhhhhhhhcccccccccc
Confidence 988899999999999999999 9999999999999999999999999999 89999888888887777777655555555
Q ss_pred CceeeeeeeEEEcCeeeeccCCCCCceEEE-ccCCCceeeeecccCCCCccccccCCCCCCCCCceeeEeecccccccee
Q 044684 183 GMGVANAGLVYFHGSLLAMSEDDLPYRVKI-KPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLK 261 (545)
Q Consensus 183 ~~~~aNt~v~~~~grLlAl~E~~~Py~~~i-~p~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~tGel~~~~~~~~~~p~l~ 261 (545)
++|+|||||++|+||||||||+|+||++++ || +||||+|++||+|+|..+||||||+||+|||||+|+|+. .+|+++
T Consensus 172 ~~~~ANT~vi~~~grLlAl~E~g~Py~l~~~Dp-~tLeT~G~~df~g~l~~~~TAHPk~DP~TGel~~fgy~~-~~p~~~ 249 (545)
T PLN02491 172 GNGTGNTALIYHHGKLLALSEADKPYVVKVLED-GDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSH-EPPYIT 249 (545)
T ss_pred CCCCCceeEEEECCEEEEEEcCCCCeEecCCCC-CCcceeeecccCCccCcccccCccCcCCCCCEEEEEecC-CCCcEE
Confidence 678999999999999999999999999996 78 999999999999999989999999999999999999998 569999
Q ss_pred eEEeecCCCCCCCCceeecCCCCceeeeeeeecCeEEecCceeEEeecccccC-CCceEecCCCcceeccccCCCCCCCC
Q 044684 262 YFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRG-GSPVIFDKNKTSRFGVLSKNDADESG 340 (545)
Q Consensus 262 ~~~~~~~~~G~~~~~~~i~~~~p~~~HDfaiTeny~V~~~~pl~~~~~~m~~g-~~~~~~d~~~~tr~~vipR~~~~~~~ 340 (545)
|+++ |++|++.+.++|+++.++|||||||||||+||+++|+++++.+|++| +.++.|++++++|||||||++++.+.
T Consensus 250 y~~~--~~~G~~~~~v~i~l~~~~~~HDFaiTeny~Vf~~~Pl~~~~~~~~~~~~~~~~~d~~~~~r~gVipR~~~~~~~ 327 (545)
T PLN02491 250 YRVI--SKDGAMHDPVPITISEPIMMHDFAITENYAIFMDLPLYFRPKEMVKEKKFIYTFDATKKARFGVLPRYAKDELM 327 (545)
T ss_pred EEEE--CCCCcCcceeEeecCCCceeeeeEecCCEEEEEECCcccCHHHHhhCCCceeEECCCCCcEEEEEECCCCCCCc
Confidence 9999 99999999999999999999999999999999999999999999876 56788999999999999999876678
Q ss_pred ceEEeCCceeeeeeccccccCCCCCcccEEEEcccCCCCC-----cccccCCCcccchhheeeecccCCccccccccccc
Q 044684 341 IQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPD-----SVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSGM 415 (545)
Q Consensus 341 v~w~e~p~~f~fH~~NA~Ee~~~~~~~~vvv~~~~~~~~~-----~~~~~~~~~l~~~l~r~~ldl~tg~~~~~~l~~~~ 415 (545)
++||++|+||+||++||||| +|+ ||+|.|++.+.+ ..+.+..+.+.++|+||||||+||+++++.|+ +.
T Consensus 328 irw~e~~~~f~fH~~NA~Ee--~~~---Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~ridl~tg~~~~~~l~-~~ 401 (545)
T PLN02491 328 IRWFELPNCFIFHNANAWEE--EDE---VVLITCRLENPDLDMVNGKVKEKLENFGNELYEMRFNMKTGAASQKKLS-AS 401 (545)
T ss_pred eEEEEcCCceEeecCCcccc--CCe---EEEEEeccCCCccccccccccccccccCceEEEEEEECCCCceeeeccC-Cc
Confidence 99999999999999999998 678 999999997643 12222223456899999999999999999998 89
Q ss_pred ccccccccccccCcccceEEEEeeCCCCCCccceeEeccC----cce---------EeEEecCcccCCcceeecCCCCCC
Q 044684 416 NLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGT----GEV---------TKFMYGAHRFGGEPMFVPQNSKNV 482 (545)
Q Consensus 416 ~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~t----g~~---------~~~~~g~~~~~~EPvFVPr~~~~~ 482 (545)
++|||+||++|.||||||+|+++.+++++++||+|+|+++ |+. +.|++|++||+|||+||||++
T Consensus 402 ~~EfP~In~~~~Grk~ry~Y~~~~~~~~~~~gl~K~D~~t~~~~g~~~~~~~~~~~~~~~~g~~~~~~EPvFVPr~~--- 478 (545)
T PLN02491 402 AVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPETGKKKLEVGGNVKGIFDLGPGRFGSEAIFVPREP--- 478 (545)
T ss_pred ccccCccCHHHCCCcccEEEEeccCCccCcCeEEEEEecccccCCccccccccceeEEEEcCCCccccCCEEecCCC---
Confidence 9999999999999999999999888888899999999996 433 478999999999999999986
Q ss_pred C-CCCCCCceEEEEEeccccccceeEEEecccceE--EEEEecCCccccccceeecCchhhhccc
Q 044684 483 G-SGREDEGFIMGFVRDERREESEMVIVKASSMEQ--VASVKLPRRVPYGFHGTFISEQELSGQV 544 (545)
Q Consensus 483 ~-~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~--~A~v~LP~rvP~GFHG~fv~~~~l~~~~ 544 (545)
+ +.+|||||||++|||+++++|+|+||||++|++ +|+|+||+||||||||+|++++||++|+
T Consensus 479 ~~~~~EDDG~ll~~V~d~~~~~S~l~VlDAk~~~~~pVA~v~LP~rVP~GfHG~fv~~~~l~~~~ 543 (545)
T PLN02491 479 GTTSEEDDGYLIFFVHDENTGKSSVNVIDAKTMSADPVAVVELPHRVPYGFHAFFVTEEQLQEQA 543 (545)
T ss_pred CCCcccCCcEEEEEEEcCCCCcceEEEEeCCCCCCCeeEEEECCCCCCCCccccCcCHHHHHHhh
Confidence 2 358999999999999999999999999999995 4999999999999999999999999985
No 3
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.4e-116 Score=910.57 Aligned_cols=448 Identities=36% Similarity=0.596 Sum_probs=391.5
Q ss_pred eeecccccCCCCCcccccc-ccccCCCCcceeeeecCCCCCCCC-CCcCccccCCCcEEEEEeCCCCceeeeeecccchh
Q 044684 61 QISGNFAPVQECPVHHGLQ-VVGRIPDCLRGVYVRNGANPMFVP-SGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSR 138 (545)
Q Consensus 61 ~l~g~f~pv~E~~~~~~l~-V~G~iP~~L~Gt~~RNGPnp~~~~-~~~~H~FDGdGMlh~~~~~~~G~a~y~~R~v~T~~ 138 (545)
+.+|+|+|+.+|-....+. |+|+||++|+|+|||||||++..+ .+.+||||||||||+|.|++.|+|+|+||||||.+
T Consensus 21 ~w~g~~a~~~~E~~~t~L~~V~G~iPa~L~Gtl~RNGP~~l~~~g~~~~HwFDGDGMI~~v~f~~gg~a~yrnrfVrT~g 100 (490)
T COG3670 21 YWTGGFAPVRTEFDATDLTDVEGRIPADLDGTLYRNGPNPLHRGGIATYHWFDGDGMIHAVAFRDGGRATYRNRFVRTQG 100 (490)
T ss_pred hhhccCCccceeecccccceeeecCCcccCceEEccCCCccccCCccccCCccCCCeEEEEEecCCCceEEEEEEEeece
Confidence 3689999998777765666 999999999999999999999876 56799999999999999999339999999999999
Q ss_pred hhHHHhcCCCCCCccccccccchhHHHHHHHHHhhccccccCCCCceeeeeeeEEEcCeeeeccCCCCCceEEEccCCCc
Q 044684 139 LVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDL 218 (545)
Q Consensus 139 ~~~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~~~g~~~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~~i~p~~tL 218 (545)
|.+|++||++++++ +++..+.. .|. ... ....+|.|||||++|+++|+||||+|.||+|| | .||
T Consensus 101 ~~ae~~Ag~~l~~g-~~~~~p~~--~~~---------~~~-~~~lkn~aNTsVi~~~~~LlalwEgG~pyrLd--p-~tL 164 (490)
T COG3670 101 YLAENEAGKPLWGG-LGETQPPG--VRP---------HSR-TGDLKNAANTSVIMHGDELLALWEGGSPYRLD--P-DTL 164 (490)
T ss_pred eehhhhcCcceecc-ccccCCCC--cCc---------Ccc-ccccccCCccceEeehhHHHHHHhcCCccccC--h-hHh
Confidence 99999999999999 44433221 010 000 01246899999999999999999999999988 7 899
Q ss_pred eeeeecccCC-CCccccccCCCCCCCCCceeeEeeccccccceeeEEeecCCCCCCCCceeecCCCCceeeeeeeecCeE
Q 044684 219 ETIGRFSFDD-QLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCV 297 (545)
Q Consensus 219 eTlG~~d~~g-~l~~~~tAHPk~Dp~tGel~~~~~~~~~~p~l~~~~~~~~~~G~~~~~~~i~~~~p~~~HDfaiTeny~ 297 (545)
+|+|..+|+| .+.++|+||||+||+||||++|||+.. .++++|+++ |++|++.+.+.|++|.+.|||||+||+||+
T Consensus 165 ~TlG~~~~~g~~~g~~fsAHPkvDp~tgel~~fg~s~~-~~~l~~~~v--~~~G~l~r~~~i~lpg~~~~HDFa~T~~y~ 241 (490)
T COG3670 165 ETLGKEDFGGDPLGGPFSAHPKVDPDTGELFNFGYSFA-LPYLTYYVV--DADGELRRTVDIPLPGPPMMHDFAITENYL 241 (490)
T ss_pred hhcChhhcCCCCCCCccccCccCCCCCceEEEEEeccC-CCeeEEEEE--CCCCcEEEeeeeecCCCccceeeeecCceE
Confidence 9999999999 555689999999999999999999984 469999999 999999999999999999999999999999
Q ss_pred EecCceeEEee-ccccc---CCCceEecCCCcceeccccCCCCCCCCceEEeCCceeeeeeccccccCCCCCcccEEEEc
Q 044684 298 IIPDHQVVFKL-SEMIR---GGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIG 373 (545)
Q Consensus 298 V~~~~pl~~~~-~~m~~---g~~~~~~d~~~~tr~~vipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~~~~vvv~~ 373 (545)
||+++|+.+|+ ..++. .+.++.|+|+.++||+||||.+ + ++|||||+++||+||+.||||+. ++. |.+|.
T Consensus 242 If~~~Pv~~d~~p~ll~~~~~~~~~~~~pe~ptri~V~pR~g-~-~~irwfE~~p~fvfH~~NAye~~-d~~---v~~d~ 315 (490)
T COG3670 242 IFFDLPVTFDPVPRLLGRPADGHAMRWRPELPTRILVLPREG-D-SEIRWFEAEPGFVFHFLNAYEEG-DEV---VLVDF 315 (490)
T ss_pred EEEeCcccccchhHHhcCcccccceeecCCCCcEEEEEccCC-C-CceeEEecCCeEEEEecceeecC-CCc---EEEEE
Confidence 99999999995 33332 3678999999999999999986 3 78999999999999999999994 344 77777
Q ss_pred ccCCCCCcccccCC---C-----cccchhheeeecccCCcccccccccccccccccccccccCcccceEEEEeeCC-CCC
Q 044684 374 SCMDPPDSVFNEHQ---D-----PVRSELSEIRLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVYLAIADP-WPK 444 (545)
Q Consensus 374 ~~~~~~~~~~~~~~---~-----~l~~~l~r~~ldl~tg~~~~~~l~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~-~~~ 444 (545)
+|+.+.....+... + ...++|+||+|||+||++..+.+. ++++|||+||++|+|++|||.|++...| +..
T Consensus 316 ~~~~~~~~~~~~~~~~~~g~~~~~a~~~L~R~~lnl~tg~v~~~~~~-~r~~EFP~in~~~~G~p~RY~Y~~~~rp~~~l 394 (490)
T COG3670 316 LRYDDFSQTLDTLGEGPGGDFRTLAPPRLHRWTLNLKTGKVAEEQLD-DRACEFPRINPRYVGQPYRYTYMSGARPGTFL 394 (490)
T ss_pred EeecccccccccccccccccccccCCCcceEEEEccccchhHHHhhh-hhhcccCccChhhcCCceEEEEEecccCCccc
Confidence 77765433333221 1 114799999999999999999888 9999999999999999999999998765 345
Q ss_pred Ccc---ceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceEE--EE
Q 044684 445 CSG---IAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQV--AS 519 (545)
Q Consensus 445 ~~g---i~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~~--A~ 519 (545)
++| |+|+|++||+.+.|++++++|+|||+|||||+ +++|||||||++|+|.+.+.|+|+|+||++++++ ||
T Consensus 395 ~~g~~~l~k~D~~tg~~~~~~~g~~~y~~E~vfvPrpg----~~~EdDGwLl~~vyd~~~~~Sel~v~DA~~~~~epIa~ 470 (490)
T COG3670 395 FQGLQTLAKHDLETGTSQVYSFGPRGYGSEPVFVPRPG----SSAEDDGWLLTLVYDGDRHASELLVFDAQRVTAEPIAR 470 (490)
T ss_pred hhhcceeEEEeccCCcEEEEecCCCCcccccccccCCC----CCcCCCcEEEEEEEecCCCcceEEEEecccCCCCcceE
Confidence 566 99999999999999999999999999999997 8899999999999999999999999999998887 99
Q ss_pred EecCCccccccceeecCch
Q 044684 520 VKLPRRVPYGFHGTFISEQ 538 (545)
Q Consensus 520 v~LP~rvP~GFHG~fv~~~ 538 (545)
++||++|||||||+|++++
T Consensus 471 l~Lp~~vP~gfHG~w~~~~ 489 (490)
T COG3670 471 LALPQRVPYGFHGNWVPTE 489 (490)
T ss_pred Eeccccccccccccccccc
Confidence 9999999999999999875
No 4
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=100.00 E-value=2.3e-110 Score=913.11 Aligned_cols=455 Identities=35% Similarity=0.618 Sum_probs=346.8
Q ss_pred ecccccCCCCC-ccccccccccCCCCcceeeeecCCCCCC-C-CCCcCccccCCCcEEEEEeCCCCceeeeeecccchhh
Q 044684 63 SGNFAPVQECP-VHHGLQVVGRIPDCLRGVYVRNGANPMF-V-PSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRL 139 (545)
Q Consensus 63 ~g~f~pv~E~~-~~~~l~V~G~iP~~L~Gt~~RNGPnp~~-~-~~~~~H~FDGdGMlh~~~~~~~G~a~y~~R~v~T~~~ 139 (545)
+|+|+|+.+|. +...+.|+|+||+||+|+|||||||+++ . ....+||||||||||+|+|++ |+|+|+||||+|++|
T Consensus 1 ~g~f~~~~~E~~~~~~~~v~G~iP~~L~G~~~RnGP~~~~~~~~~~~~H~FDGdGmv~~~~f~~-g~v~y~~R~v~T~~~ 79 (486)
T PF03055_consen 1 SGGFAPVTEEVPDPEDLEVEGEIPSWLDGTLYRNGPGPFEVIGGRRYNHWFDGDGMVHAFRFDD-GRVTYRNRFVRTEGY 79 (486)
T ss_dssp SGCGS---SEE-EEEC-EEEE---TT-EEEEEEEEBEESE-ETTEE-SCGGGSEBEEEEEEEET-TEEEEEEEE---HHH
T ss_pred CCCCCCCccccCCccccEEeeeCCCcCCCeeEEEcCcccccCCCcccccccCCCCEEEEEEECC-CCceeEEEEeCcHHH
Confidence 58999998777 6777999999999999999999999887 3 445689999999999999999 999999999999999
Q ss_pred hHHHhcCCCCCCccccccccchhHHHHHHHHHhhccccccCCCCceeeeeeeEEEcCeeeeccCCCCCceEEEccCCCce
Q 044684 140 VQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLE 219 (545)
Q Consensus 140 ~~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~~~g~~~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~~i~p~~tLe 219 (545)
++|+++|+.++++.||+....... +. ++ +.. ........+|+|||||++|+||||||||+|.||+|| | .|||
T Consensus 80 ~~e~~~g~~~~~g~~gt~~~~~~~-~~-~~--~~~-~~~~~~~~~~~aNt~v~~~~g~llAl~E~g~p~~lD--p-~TLe 151 (486)
T PF03055_consen 80 KAEREAGRRLYRGEFGTVPLPDPC-RN-IF--RFP-MPFFRGKPKNNANTNVIPHGGRLLALWEGGPPYELD--P-DTLE 151 (486)
T ss_dssp HHHHHHTSS-SC-TTTCTTCSTHH-HH-TC--HHT-TS--GGGB-----SEEEEETTEEEEE-TTSEEEEEE--T-TTCE
T ss_pred HHHHhcCCceecccccccccCchh-hh-hh--hhc-cccccccCCCCceeeeEEECCEEEEEEcCCCCEEec--h-hHhh
Confidence 999999999998878876421111 10 00 000 111122356899999999999999999999999998 8 8999
Q ss_pred eeeecccCCCCc-cccccCCCCCCCCCceeeEeecccc--ccceeeEEeecCCCCCCCCceee-cCCCCceeeeeeeecC
Q 044684 220 TIGRFSFDDQLD-CPMIAHPKVDPVTSDLHALSYNVVR--KPYLKYFRFGGSNDGKKSRDVDV-TLDQPTMIHDFAITEN 295 (545)
Q Consensus 220 TlG~~d~~g~l~-~~~tAHPk~Dp~tGel~~~~~~~~~--~p~l~~~~~~~~~~G~~~~~~~i-~~~~p~~~HDfaiTen 295 (545)
|+|.+||+++|+ ..||||||+||+|||+++|+++.+. .|+++|+++ +++|++.+..++ +++.++|||||+||||
T Consensus 152 T~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~iHdf~vT~~ 229 (486)
T PF03055_consen 152 TLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEI--DPDGKKIHRVPSFPLPRPSYIHDFAVTEN 229 (486)
T ss_dssp EEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE---TTSEEEEEEEESCCCS-B-----EE-SS
T ss_pred hcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEE--cCccceeEEeeeccCCCCcccccccccCc
Confidence 999999999999 6799999999999999999998654 589999999 999977655665 8999999999999999
Q ss_pred eEEecCceeEEeecccccCC---CceEecCCCcceeccccCCCCCCCCceEEeCCceeeeeeccccccCCC-CCcccEEE
Q 044684 296 CVIIPDHQVVFKLSEMIRGG---SPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENND-DGDRNVVV 371 (545)
Q Consensus 296 y~V~~~~pl~~~~~~m~~g~---~~~~~d~~~~tr~~vipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~-~~~~~vvv 371 (545)
|+||+++|+.+++.+++.|. .++.|++++++||+||||++++ +.++||++|+||+||++||||++++ ++ ||+
T Consensus 230 Y~V~~~~P~~~~~~~~~~g~~~~~~~~~~p~~~t~~~VipR~~~~-~~v~~~~~~~~~~~H~~NAyE~~dg~~~---iv~ 305 (486)
T PF03055_consen 230 YVVFPDNPLRFDPERLLLGGSPIDCLKWDPERPTRFHVIPRDGGK-SPVRWFEAPPFFVFHFVNAYEDDDGGGE---IVL 305 (486)
T ss_dssp EEEEEE-SEEE-HHHHHTTCCTGGCEEE-TTS-EEEEEEETTTSC-CCEEEEEETTCEEEEEEEEEEETTT-TE---EEE
T ss_pred eEEEEECCeEECHHHHhhCCcccceEEECCCCCeEEEEEECcCCC-ceeEEEecCChhhccccceeecCCCceE---EEE
Confidence 99999999999999999887 8999999999999999998754 6899999999999999999998421 26 999
Q ss_pred EcccCCCCCccccc-----------CCCcccchhheeeeccc--CCccccccccccc-ccccccccccccCcccceEEEE
Q 044684 372 IGSCMDPPDSVFNE-----------HQDPVRSELSEIRLNLK--TGESTRRVVVSGM-NLEAGQVNRALLGQKTRYVYLA 437 (545)
Q Consensus 372 ~~~~~~~~~~~~~~-----------~~~~l~~~l~r~~ldl~--tg~~~~~~l~~~~-~~EfP~In~~~~Gr~~Ry~Y~~ 437 (545)
|.|++.+....... ......++|+||+||++ +|+++++.|. +. ++|||+||++|.|++|||+|++
T Consensus 306 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~idl~~~~~~~~~~~l~-~~~~~EfP~in~~~~g~~~ry~Y~~ 384 (486)
T PF03055_consen 306 DACRYDDPEFLDSFYLDNLRPDGMDFNSDSPGRLRRYRIDLDSKTGRVSEEPLD-DGNPCEFPRINPRYSGRPYRYVYAV 384 (486)
T ss_dssp EEEEECSSS-CGCSCHHHHCC-HHHCCCS-EEEEEEEEEETT--TCEEEEEEEE-TTEEEEEEEE-GGGTTS--SEEEEE
T ss_pred EEeecCCcccccccchhcccccccccccCCCceEEEEEEccccccceeEHhHhc-cCCCcccceeCcccCCCcccEEEEE
Confidence 99999775533211 11235679999999999 8989888888 66 6999999999999999999987
Q ss_pred eeCC----CCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEeccc
Q 044684 438 IADP----WPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASS 513 (545)
Q Consensus 438 ~~~~----~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~ 513 (545)
+..+ ...+++|+|+|++||+++.|.+++++|++||+||||++ +.+|||||||++|+|.++++|+|+||||++
T Consensus 385 ~~~~~~~~~~~~~~l~k~D~~tg~~~~~~~~~~~~~~EpvFVPr~~----~~~EdDG~Ll~~v~~~~~~~s~l~VlDA~~ 460 (486)
T PF03055_consen 385 GMDPERSPGFPFNGLVKVDLETGEVQRWSFGPGCFPGEPVFVPRPG----GAEEDDGYLLSVVYDSDTNRSELLVLDAKD 460 (486)
T ss_dssp EECSCTS---EEEEEEEEETTTTEEEEEE-TTTEEE--EEEEE-TT----S-STT-EEEEEEEEETTTTCEEEEEEETTT
T ss_pred eecccCCcCcCCCEEEEEecccccceEEECCCCceecceEeccCCC----CCCCCceEEEEEEEECCCCccEEEEEeCCC
Confidence 6553 34689999999999999999999999999999999997 789999999999999999999999999999
Q ss_pred ceE--EEEEecCCccccccceeecCc
Q 044684 514 MEQ--VASVKLPRRVPYGFHGTFISE 537 (545)
Q Consensus 514 ~~~--~A~v~LP~rvP~GFHG~fv~~ 537 (545)
|++ +||++||++||+||||+|+++
T Consensus 461 l~~GPvAr~~lP~~vP~gfHG~w~~~ 486 (486)
T PF03055_consen 461 LEEGPVARVELPHRVPYGFHGSWVPE 486 (486)
T ss_dssp TCE--EEEEEESS---S-SEEEEEE-
T ss_pred CCcCceEEEECCCCCCCCccccccCC
Confidence 999 599999999999999999974
No 5
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=100.00 E-value=4.1e-104 Score=878.48 Aligned_cols=455 Identities=26% Similarity=0.444 Sum_probs=371.3
Q ss_pred eeecccccCCCCC-ccccc-cccccCCCCc-ceeeeecCCCCCCCCC-CcCccccCCCcEEEEEeCCCC--ceeeeeecc
Q 044684 61 QISGNFAPVQECP-VHHGL-QVVGRIPDCL-RGVYVRNGANPMFVPS-GGHHLFDGDGMIHAVTLGHAN--QASYSCRYT 134 (545)
Q Consensus 61 ~l~g~f~pv~E~~-~~~~l-~V~G~iP~~L-~Gt~~RNGPnp~~~~~-~~~H~FDGdGMlh~~~~~~~G--~a~y~~R~v 134 (545)
-.+++|+|+.+|. +...+ +|+|+||+|| +|||||||||+++.+. ..+||||||||||+|+|++ | +|+|+||||
T Consensus 59 ~~~~~f~~~~~E~~~~~~l~~V~G~IP~~L~~GtlyRnGPg~~~~~~~~~~HwFDGdGmlh~f~f~~-G~~~v~y~nRfV 137 (610)
T PLN02969 59 DYQFLFVSQRSETKDPVRLRVVEGAIPSDFPSGTYYLAGPGLFTDDHGSTVHPLDGHGYLRAFHIDG-GDRPVQYSARYV 137 (610)
T ss_pred HhhhhhcCChhhcCCccccceEEecCCchhcCCEEEEecCCcccCCCCCccccCCCCceEEEEEEcC-CCeEEEEEeeee
Confidence 3579999998776 44455 6999999999 9999999999877654 3589999999999999999 8 599999999
Q ss_pred cchhhhHHHhcCCCCCC----ccccccccchhHHHHHHHHHhhccccccCCCCceeeeeeeEEEcCeeeeccCCCCCceE
Q 044684 135 QTSRLVQEAKYGKPVFP----KPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRV 210 (545)
Q Consensus 135 ~T~~~~~e~~ag~~~~~----~~~g~~~~~~~~~r~~~~~~r~~~g~~~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~ 210 (545)
||++|++|+++|++++. +.|+...+ ...+.+....+|+|||||++|+||||||||+|.||+|
T Consensus 138 rT~~~~~E~~ag~~~~~~~~~~pfs~~~~--------------~~~~~~~~~~kn~ANT~V~~~gg~LlAl~E~g~P~~l 203 (610)
T PLN02969 138 KTEAKKEEHDPETRTWRFTYRGPFSVLKG--------------GKRVGNVKVMKNVANTSVLKWGGRLLCLWEGGEPYEI 203 (610)
T ss_pred ccHHHHHHHHhCCcceeeeeccchhcccC--------------CCCcccccccccCCCcceeeeCCEEEEecCCCCCeEc
Confidence 99999999999987753 11222111 0000011123689999999999999999999999998
Q ss_pred EEccCCCceeeeeccc-----------------------------CCCCc---cccccCCCCCCCCCceeeEeecc----
Q 044684 211 KIKPDGDLETIGRFSF-----------------------------DDQLD---CPMIAHPKVDPVTSDLHALSYNV---- 254 (545)
Q Consensus 211 ~i~p~~tLeTlG~~d~-----------------------------~g~l~---~~~tAHPk~Dp~tGel~~~~~~~---- 254 (545)
| | .||||+|++|| .|+++ ..||||||+||.||||++|+|+.
T Consensus 204 D--P-~TLeT~G~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~p~~~ftAHpK~DP~tg~lv~f~~~~~~~~ 280 (610)
T PLN02969 204 D--S-GTLETIGRFDLAPDDDSSKDDRLQGSDAWDLAARLLKPILTGVFKMPKKRLLSHYKIDGRRNRLLVVTCNAEDML 280 (610)
T ss_pred C--c-CccceeecccccccccccccccccccccccccccccccccccccccCCccccccCCcCCCCCCEEEEEecccccc
Confidence 7 8 89999999999 34443 36899999999999999999985
Q ss_pred ccccceeeEEeecCCCCCCCCceeecCCCCceeeeeeeecCeEEecCceeEEeecccc---cCC----CceEecCCCcc-
Q 044684 255 VRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMI---RGG----SPVIFDKNKTS- 326 (545)
Q Consensus 255 ~~~p~l~~~~~~~~~~G~~~~~~~i~~~~p~~~HDfaiTeny~V~~~~pl~~~~~~m~---~g~----~~~~~d~~~~t- 326 (545)
..++.++||++ |++|++.+.++|++|.++|||||||||||+||+++|+++|+.+++ .|. +++.|++++++
T Consensus 281 ~~~~~~~~y~~--d~~G~~~~~~~~~~p~~~~iHDfaiTeny~Vf~~~P~~~d~~~~l~~~~G~~~~~~~l~wdp~~~t~ 358 (610)
T PLN02969 281 LPRSNFTFYEF--DADFKLVQRKEFKLDDHLMIHDWAFTDTHYVLLANRVKLDVPGSLLAMAGLSPMISALAVDPSRPSS 358 (610)
T ss_pred CCCceeEEEEE--CCCCCEecceeecCCCcceeeeeeccCCEEEEEECceecCHHHHHHHhhcCCCchheeEECCCCCcc
Confidence 35688999999 999999999999999999999999999999999999999988644 343 45899999995
Q ss_pred eeccccCCCCCC-CCceE---EeCC-ceeeeeeccccccCC-CCCcccEEEEccc--CCCCCcc--c----cc--CC---
Q 044684 327 RFGVLSKNDADE-SGIQW---IDVP-NCFCFHLWNAWEENN-DDGDRNVVVIGSC--MDPPDSV--F----NE--HQ--- 387 (545)
Q Consensus 327 r~~vipR~~~~~-~~v~w---~e~p-~~f~fH~~NA~Ee~~-~~~~~~vvv~~~~--~~~~~~~--~----~~--~~--- 387 (545)
||+||||++++. ..++| +++| +||+||++|||||.+ +|+ ..||+|.|+ +.+...+ + .. ..
T Consensus 359 ~~~VipR~~~~~~~~~~W~v~~e~~~~~f~fH~~NAfEe~~~~g~-~~Ivvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (610)
T PLN02969 359 PVYLLPRFPEKEAGGRDWRVPVEVPSQLWLIHVGNAYEERDDRGN-LRIQLHASACSYQWFSFHRMFGYDWQNKKLDPSV 437 (610)
T ss_pred EEEEEECcCCCcccceeeeeEEeeCCCeEEEeccceeecCCCCCc-eEEEEEEeccccccccccccccccccccccCcch
Confidence 899999997542 57999 9998 599999999999732 121 128898874 3222110 0 00 00
Q ss_pred ------Ccccchhheeeeccc-CCcc---ccccccc--ccccccccccccccCcccceEEEEeeCC------CCCCccce
Q 044684 388 ------DPVRSELSEIRLNLK-TGES---TRRVVVS--GMNLEAGQVNRALLGQKTRYVYLAIADP------WPKCSGIA 449 (545)
Q Consensus 388 ------~~l~~~l~r~~ldl~-tg~~---~~~~l~~--~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~------~~~~~gi~ 449 (545)
....++|+||+||++ +|++ +.+.|.. +.++|||+||++|.||+|||+|+++.++ +..+++|+
T Consensus 438 ~~~~~~~~~~~~l~r~~idl~~~g~~~~~~~~~l~~~~~~~~EFP~In~~~~Gr~~ry~Y~~~~~~~~~~~~~~~~~~l~ 517 (610)
T PLN02969 438 MNNAKGKELLPHLVQVSIDLDRTGDCRSCDVEPLSNQWEKPADFPVINPSFSGQKNEYTYAAAASGSRKTLPHFPFDSVV 517 (610)
T ss_pred hcccCcccccceEEEEEEeCCcCCccccccceeeccccccccccCccChhHCCCcceEEEEeeecCCCcccccCCcCeEE
Confidence 112468999999996 6765 3456631 5689999999999999999999987652 33579999
Q ss_pred eEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceE----EEEEecCCc
Q 044684 450 KVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQ----VASVKLPRR 525 (545)
Q Consensus 450 K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~----~A~v~LP~r 525 (545)
|+|+++|+++.|++|+++|+|||+||||++. +++++|||||||++|+|..+++|+|+||||++|++ +||++||++
T Consensus 518 K~D~~tg~~~~w~~g~~~~~~EPvFVPr~~~-p~~~~EDDG~Ll~~v~d~~~~~S~LvILDAk~~~eg~~PVAri~LP~~ 596 (610)
T PLN02969 518 KLDVPDGSARSWSTGARRFVGEPVFVPRKSS-QGGGEEDDGYVLVVEYAVSDERCYLVILDAKRIGERDAVVAKLEVPKH 596 (610)
T ss_pred EEECCCCCEEEEEeCCCCcccCCEEecCCCC-CCCCccCCcEEEEEEEECCCCceEEEEEeCCCCcccCceeEEEECCcc
Confidence 9999999999999999999999999999520 02678999999999999999999999999999998 699999999
Q ss_pred c--ccccceeecCc
Q 044684 526 V--PYGFHGTFISE 537 (545)
Q Consensus 526 v--P~GFHG~fv~~ 537 (545)
| |+||||+|+++
T Consensus 597 v~~P~GfHG~w~~~ 610 (610)
T PLN02969 597 LTFPMGFHGFWADE 610 (610)
T ss_pred cCCCccccccccCC
Confidence 8 99999999864
No 6
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.1e-88 Score=733.21 Aligned_cols=512 Identities=47% Similarity=0.763 Sum_probs=481.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhcccccCCCCCCCCCCceeeecccccCCCCCccccccccccCCCCcceeeeecCCCC
Q 044684 20 YPHHLNPLQKLAASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANP 99 (545)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~g~f~pv~E~~~~~~l~V~G~iP~~L~Gt~~RNGPnp 99 (545)
.+..+++.+..+..++|.. ..+.+...+.+|++++.+|+.++.++|+|+.|.++...+.++|.+|.+++|.++|||||+
T Consensus 67 ~h~fd~~~~~~~~~~~dg~-~~~~~~~~~s~~y~~~~~p~r~v~~~f~~~~~~pd~~~~~~s~~~~~~~~g~~~rd~aN~ 145 (582)
T KOG1285|consen 67 NHLFDGPALLHAFHFLDGR-VYYSSRYLESDPYKKTVDPNRIVSGEFAPVAEFPDPCKNIFSGFFPEFRNGESIRDNANP 145 (582)
T ss_pred cccccchhhhhheeecCCe-EEEEeeecccCCcccccccceeeeccccccCCCCCccCcceeeeeeecccccccccCCCc
Confidence 3444688899999999998 555555466889999999999999999999999888888999999999999999999999
Q ss_pred CCCCCCcCccccCCCcEEEEEeCCCC--ceeeeeecccchhhhHHHhcCCCCCCccccccccchhHHHHHHHHHhhcccc
Q 044684 100 MFVPSGGHHLFDGDGMIHAVTLGHAN--QASYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGL 177 (545)
Q Consensus 100 ~~~~~~~~H~FDGdGMlh~~~~~~~G--~a~y~~R~v~T~~~~~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~~~g~ 177 (545)
.|.+.+++|+|||+||+|+++|+. | +++|++||.+| |.+|..+|+..+...+|++.++.|++++..+++|...++
T Consensus 146 ~f~pv~g~~~~~gtet~~~~ki~~-~tl~t~~~~~~~k~--~v~~~~~gah~~~d~~G~~~g~~g~~~~~~~~~r~~~~~ 222 (582)
T KOG1285|consen 146 NFTPVGGHHLYAGTETPHAVKIDP-GTLETTYKVRFTKT--LVQEHTAGAHPHPDEIGTVYGHFGIARFGLFFARALTVL 222 (582)
T ss_pred ceeecCCCeeEecCCCceeEEecC-cccceeEeeccccc--eeeeeecccCCcccCcccEEeeechhhccccccceeEEE
Confidence 999999999999999999999999 8 88999999999 999999998888888999999889999998889998899
Q ss_pred ccCCCCceeeeeeeEEEcCeeeeccCCCCCceEEEccCCCcee-eeecccCCCCccccccCCCCCCCCCceeeEeecccc
Q 044684 178 VDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLET-IGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVR 256 (545)
Q Consensus 178 ~~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~~i~p~~tLeT-lG~~d~~g~l~~~~tAHPk~Dp~tGel~~~~~~~~~ 256 (545)
.++..+.+.+|+.++++.++++|+.|+++||.+.+...|++|| ||+++|+++|...+.||||+||.||++++++|+..+
T Consensus 223 ~~p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~tenyi~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~ 302 (582)
T KOG1285|consen 223 KNPANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENYIGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVP 302 (582)
T ss_pred ecCCCccccccccceEeecceeeeccCCCccceEEeecCCccceEeEecCCcccchhhhccCcccccccchhhhhhcccC
Confidence 8888899999999999999999999999999999888899999 999999999999999999999999999999999988
Q ss_pred ccceeeEEeecCCCCCCCCceeecCCCCceeeeeeeecCeEEecCceeEEeecccccCCCceEecCCCcceeccccCCCC
Q 044684 257 KPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDA 336 (545)
Q Consensus 257 ~p~l~~~~~~~~~~G~~~~~~~i~~~~p~~~HDfaiTeny~V~~~~pl~~~~~~m~~g~~~~~~d~~~~tr~~vipR~~~ 336 (545)
+|++.|+++ +++|.++.++.|....|+|+||||+|||++|++|+++.+++..|..+++++.++..+..|+++.+++..
T Consensus 303 ~~~l~~~~~--~~~~~k~~~~~~~~~~~t~hh~na~eedg~vi~D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~ 380 (582)
T KOG1285|consen 303 KPYLIYHKF--SKEGGKSVPVEIFPSFPTFHHDNAFEEDGCVVPDLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAP 380 (582)
T ss_pred CCcEEEEEe--ccccCccCcceeccCcceEEEeeeecccCceEEEEEEEechhhhhcccceeecccccccccccccccCC
Confidence 899999999 999999999999777999999999999999999999999999999988899999999999999999999
Q ss_pred CCCCceEEeCCceeeeeeccccccCCCC-CcccEEEEcccCCCCCcccccCCCcccchhheeeecccCCccccccccccc
Q 044684 337 DESGIQWIDVPNCFCFHLWNAWEENNDD-GDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVSGM 415 (545)
Q Consensus 337 ~~~~v~w~e~p~~f~fH~~NA~Ee~~~~-~~~~vvv~~~~~~~~~~~~~~~~~~l~~~l~r~~ldl~tg~~~~~~l~~~~ 415 (545)
+.+.++|.+.+.+++||.+|+||+.+.+ + ++|...|+.+.+.++++.+|.+..++.+.|++++||...++.+....
T Consensus 381 d~~~~~~p~~~~~~~~~~~~~~e~~~~~~~---~~v~~~~~s~~~~i~~~~de~~~~~l~e~r~~~~tg~~~~~~~~~~~ 457 (582)
T KOG1285|consen 381 DARRIVWPLSPSKFAFHLWNNWEKKPYDWE---VVVIGSCMSSTSTIFRESDELLGNRLEEIRLNLKTGLEFPRPVIPKI 457 (582)
T ss_pred cccceEEEeccccccccchhhhcccCCCce---EEeecccCCccchhhcccccchhceeeeeeecccccccccceeeccc
Confidence 9999999999999999999999974333 5 89999999998999998889999999999999999999988887456
Q ss_pred ccccccccccccCcccceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEE
Q 044684 416 NLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGF 495 (545)
Q Consensus 416 ~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~ 495 (545)
++|+++||..|.||+|||+|+++.++|++++||+|+|+.+|++.+|.+|.++++|||+|||+|+ +.+||||||+++
T Consensus 458 nl~~~~in~~~~Gkk~ryvY~ai~~~~p~~~g~vKvDl~~g~~~~w~~~~~~~~GEP~FVP~p~----~~eEDdG~Iv~~ 533 (582)
T KOG1285|consen 458 NLDFGMINRSYLGKKYRYVYGAILDPWPKVSGIVKVDLVTGEVKKWREGGGRPGGEPIFVPRPG----TLEEDDGYIVSV 533 (582)
T ss_pred ccccccccceeecccceEEEEEecCCccCCCeEEEEEecCCceeeEecCCCccCCCceEecCCC----CcccCCcEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999996 789999999999
Q ss_pred EeccccccceeEEEecccceEEEEEecCCccccccceeecCchhhhccc
Q 044684 496 VRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQV 544 (545)
Q Consensus 496 V~d~~~~~S~L~VlDA~~~~~~A~v~LP~rvP~GFHG~fv~~~~l~~~~ 544 (545)
|||+++++|+|+|||||+|++.||++||.||||||||+|+++.+|++|+
T Consensus 534 v~~~~~~~s~l~ildAK~l~~~ar~~vp~rvP~gfHG~f~~~~~~~~~~ 582 (582)
T KOG1285|consen 534 VHDESKEKSFLLILDAKTLEEVARVEVPTRVPYGFHGTFVSTTDLATQS 582 (582)
T ss_pred EEcCCCCcccEEEEeccccceeeEEecCCCCCCccceeEeccccccccC
Confidence 9999999999999999999999999999999999999999999999985
No 7
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-32 Score=296.45 Aligned_cols=343 Identities=21% Similarity=0.234 Sum_probs=243.2
Q ss_pred ccccccCCCCcceeeeecCCCCCCCC-CCcCccccCCCcEEEEEeCCCCceeeeeecccchhhhHHHhcCCCCCCccccc
Q 044684 78 LQVVGRIPDCLRGVYVRNGANPMFVP-SGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLVQEAKYGKPVFPKPIGE 156 (545)
Q Consensus 78 l~V~G~iP~~L~Gt~~RNGPnp~~~~-~~~~H~FDGdGMlh~~~~~~~G~a~y~~R~v~T~~~~~e~~ag~~~~~~~~g~ 156 (545)
+.+.|.||.||+|+++||||+.+-.+ ...+|||||-+++|+++|.+ |+++|++||++|+.|+......+.+..+ |++
T Consensus 37 ~~~~g~ip~wL~g~~lrn~pg~~~~g~~~~~h~fd~~~~~~~~~~~d-g~~~~~~~~~~s~~y~~~~~p~r~v~~~-f~~ 114 (582)
T KOG1285|consen 37 CTVKGSIPKWLDGTLLRNGPGLFTVGEEKYNHLFDGPALLHAFHFLD-GRVYYSSRYLESDPYKKTVDPNRIVSGE-FAP 114 (582)
T ss_pred cccccccCccccccccCCCCcccccCcccccccccchhhhhheeecC-CeEEEEeeecccCCcccccccceeeecc-ccc
Confidence 77899999999999999999976434 44689999999999999999 9999999999999999988888888887 666
Q ss_pred cccchhHHHHHHHHHhhccccccCCCCceeeeeeeEEE-cCeeeeccCCCCCceEEEccCCCceeeeecccCC-CCc-cc
Q 044684 157 LHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYF-HGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDD-QLD-CP 233 (545)
Q Consensus 157 ~~~~~~~~r~~~~~~r~~~g~~~~~~~~~~aNt~v~~~-~grLlAl~E~~~Py~~~i~p~~tLeTlG~~d~~g-~l~-~~ 233 (545)
.++... .+.+.+.|+..-..++...+++||.++... +++|||.+|. |+.++|++ +||+|+..++|.+ .+. ..
T Consensus 115 ~~~~pd--~~~~~~s~~~~~~~~g~~~rd~aN~~f~pv~g~~~~~gtet--~~~~ki~~-~tl~t~~~~~~~k~~v~~~~ 189 (582)
T KOG1285|consen 115 VAEFPD--PCKNIFSGFFPEFRNGESIRDNANPNFTPVGGHHLYAGTET--PHAVKIDP-GTLETTYKVRFTKTLVQEHT 189 (582)
T ss_pred cCCCCC--ccCcceeeeeeecccccccccCCCcceeecCCCeeEecCCC--ceeEEecC-cccceeEeeccccceeeeee
Confidence 552211 111223333322233444678999999999 8899999998 89999999 9999999999999 444 36
Q ss_pred cccCCCCCCCCCceee-Eeecccc---ccceeeEEeecCCCCCCCC---c-----e--ee---cCCCCceeeeeeeecCe
Q 044684 234 MIAHPKVDPVTSDLHA-LSYNVVR---KPYLKYFRFGGSNDGKKSR---D-----V--DV---TLDQPTMIHDFAITENC 296 (545)
Q Consensus 234 ~tAHPk~Dp~tGel~~-~~~~~~~---~p~l~~~~~~~~~~G~~~~---~-----~--~i---~~~~p~~~HDfaiTeny 296 (545)
++|||+.|+. |++++ +|..... ...++..+. .+.|.... . . .+ .++.|.|||+||.||||
T Consensus 190 ~gah~~~d~~-G~~~g~~g~~~~~~~~~r~~~~~~~--p~~~~~~~~~~~v~~~~~~~a~~~dd~~~p~yvhs~G~teny 266 (582)
T KOG1285|consen 190 AGAHPHPDEI-GTVYGHFGIARFGLFFARALTVLKN--PANGVGLANAGLVWFHNRLLAYSEDDLPYPGYVHSFGDTENY 266 (582)
T ss_pred cccCCcccCc-ccEEeeechhhccccccceeEEEec--CCCccccccccceEeecceeeeccCCCccceEEeecCCccce
Confidence 8999999996 99999 6655211 223333333 33333211 1 1 11 46789999999999999
Q ss_pred EEecCceeEEeeccccc-------C---CCceEecCCCcceeccccCCCCCCCCceEEeCCceeeeeeccccccCCCCCc
Q 044684 297 VIIPDHQVVFKLSEMIR-------G---GSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGD 366 (545)
Q Consensus 297 ~V~~~~pl~~~~~~m~~-------g---~~~~~~d~~~~tr~~vipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~~ 366 (545)
+|++++|+.+++.+++. | ..++.|.++....+.++.+..+....++- .++++.||+.||||+ ++.
T Consensus 267 i~~~e~~~~l~~~~~a~pk~~~~~g~~~~~~yd~~~~~~l~~~~~~~~~~k~~~~~~--~~~~~t~hh~na~ee--dg~- 341 (582)
T KOG1285|consen 267 IGRFEFPLRLNLSKFAHPKLDPVTGEWFADFYDWVPKPYLIYHKFSKEGGKSVPVEI--FPSFPTFHHDNAFEE--DGC- 341 (582)
T ss_pred EeEecCCcccchhhhccCcccccccchhhhhhcccCCCcEEEEEeccccCccCccee--ccCcceEEEeeeecc--cCc-
Confidence 99999999999988853 2 34577888889999999998765444432 345999999999999 677
Q ss_pred ccEEEEcccCCCCCcccccCCCcc--cchhheeeecccCCccccccccc--ccccccccccccccCcccceEEEEe
Q 044684 367 RNVVVIGSCMDPPDSVFNEHQDPV--RSELSEIRLNLKTGESTRRVVVS--GMNLEAGQVNRALLGQKTRYVYLAI 438 (545)
Q Consensus 367 ~~vvv~~~~~~~~~~~~~~~~~~l--~~~l~r~~ldl~tg~~~~~~l~~--~~~~EfP~In~~~~Gr~~Ry~Y~~~ 438 (545)
||+|.|++.+...+.......+ ..+..|+.++.++-...++-+.. .....|+ ...++.-+.|-..|.+.
T Consensus 342 --vi~D~~~~~~~~~~~~~~~p~~~~~~k~~rfg~~~k~~~d~~~~~~p~~~~~~~~~-~~~~~e~~~~~~~~~v~ 414 (582)
T KOG1285|consen 342 --VVPDLCVYFDLSEMIRDTSPLLYDNGKTLRFGLLSKTAPDARRIVWPLSPSKFAFH-LWNNWEKKPYDWEVVVI 414 (582)
T ss_pred --eEEEEEEEechhhhhcccceeecccccccccccccccCCcccceEEEecccccccc-chhhhcccCCCceEEee
Confidence 9999999877653332221111 12344555555544332222220 2345666 34444445666555544
No 8
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=62.04 E-value=2.2e+02 Score=30.30 Aligned_cols=173 Identities=13% Similarity=0.173 Sum_probs=87.7
Q ss_pred CCCceEecCCCcceeccccCCCCCCCCceEEeCCceeeeeeccccccCCCCCcccEEEEcccCCCCCcccccCCCcccch
Q 044684 314 GGSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSE 393 (545)
Q Consensus 314 g~~~~~~d~~~~tr~~vipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~~~~vvv~~~~~~~~~~~~~~~~~~l~~~ 393 (545)
|+..+.|+-..-+-+.||+-.++ +.++-+++|.|....- +.+ . . .. ..|-+ +.
T Consensus 106 gk~~~V~N~TPa~SVtVVDl~~~--kvv~ei~~PGC~~iyP---~~~--~-~---F~--~lC~D--------------Gs 158 (342)
T PF06433_consen 106 GKFLYVQNFTPATSVTVVDLAAK--KVVGEIDTPGCWLIYP---SGN--R-G---FS--MLCGD--------------GS 158 (342)
T ss_dssp SSEEEEEEESSSEEEEEEETTTT--EEEEEEEGTSEEEEEE---EET--T-E---EE--EEETT--------------SC
T ss_pred CcEEEEEccCCCCeEEEEECCCC--ceeeeecCCCEEEEEe---cCC--C-c---eE--EEecC--------------Cc
Confidence 34456677777888999998764 3578899999964332 122 1 1 11 22221 23
Q ss_pred hheeeecccCCccccc--ccccccccccccccccccCcccceEEEEeeCCCCCCcc-ceeEeccCcce---EeEEecCcc
Q 044684 394 LSEIRLNLKTGESTRR--VVVSGMNLEAGQVNRALLGQKTRYVYLAIADPWPKCSG-IAKVDLGTGEV---TKFMYGAHR 467 (545)
Q Consensus 394 l~r~~ldl~tg~~~~~--~l~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~g-i~K~Dl~tg~~---~~~~~g~~~ 467 (545)
|..++||- .|+.+++ .+. ...-|-.-.++.|.+...+|.|.. ++| |.-+|+...+. ..|+.-...
T Consensus 159 l~~v~Ld~-~Gk~~~~~t~~F-~~~~dp~f~~~~~~~~~~~~~F~S-------y~G~v~~~dlsg~~~~~~~~~~~~t~~ 229 (342)
T PF06433_consen 159 LLTVTLDA-DGKEAQKSTKVF-DPDDDPLFEHPAYSRDGGRLYFVS-------YEGNVYSADLSGDSAKFGKPWSLLTDA 229 (342)
T ss_dssp EEEEEETS-TSSEEEEEEEES-STTTS-B-S--EEETTTTEEEEEB-------TTSEEEEEEETTSSEEEEEEEESS-HH
T ss_pred eEEEEECC-CCCEeEeecccc-CCCCcccccccceECCCCeEEEEe-------cCCEEEEEeccCCcccccCcccccCcc
Confidence 45555552 4444322 232 222243334566777778888753 234 34456655432 223210000
Q ss_pred cCCcceeecCCCC-CCCCCCCCCceEEEEEeccccc-----cceeEEEecccceEEEEEecCCc
Q 044684 468 FGGEPMFVPQNSK-NVGSGREDEGFIMGFVRDERRE-----ESEMVIVKASSMEQVASVKLPRR 525 (545)
Q Consensus 468 ~~~EPvFVPr~~~-~~~~~~EDDG~ll~~V~d~~~~-----~S~L~VlDA~~~~~~A~v~LP~r 525 (545)
..+.=. ||+. +.-+-....|-|.+++|....+ .+|+||+|.++=+..+|+.|++.
T Consensus 230 -e~~~~W--rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~ 290 (342)
T PF06433_consen 230 -EKADGW--RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP 290 (342)
T ss_dssp -HHHTTE--EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE
T ss_pred -ccccCc--CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc
Confidence 000000 1110 0001223456777777765432 46999999999999999999754
No 9
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=58.59 E-value=48 Score=35.44 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=46.1
Q ss_pred CcccceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeE
Q 044684 428 GQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMV 507 (545)
Q Consensus 428 Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~ 507 (545)
....||+|.+..+ ..|.++|+.++++..- .. .+.+|.=|.= ..|+-||++.-+. ...+.
T Consensus 45 s~Dgr~~yv~~rd-----g~vsviD~~~~~~v~~-i~---~G~~~~~i~~--------s~DG~~~~v~n~~----~~~v~ 103 (369)
T PF02239_consen 45 SPDGRYLYVANRD-----GTVSVIDLATGKVVAT-IK---VGGNPRGIAV--------SPDGKYVYVANYE----PGTVS 103 (369)
T ss_dssp TT-SSEEEEEETT-----SEEEEEETTSSSEEEE-EE----SSEEEEEEE----------TTTEEEEEEEE----TTEEE
T ss_pred cCCCCEEEEEcCC-----CeEEEEECCcccEEEE-Ee---cCCCcceEEE--------cCCCCEEEEEecC----CCcee
Confidence 4457999998643 4699999999875432 22 2344443332 2355688766554 35899
Q ss_pred EEecccceEEEEEecC
Q 044684 508 IVKASSMEQVASVKLP 523 (545)
Q Consensus 508 VlDA~~~~~~A~v~LP 523 (545)
|+|+++++...++...
T Consensus 104 v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTG 119 (369)
T ss_dssp EEETTT--EEEEEE--
T ss_pred Eeccccccceeecccc
Confidence 9999999988776653
No 10
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=49.37 E-value=37 Score=35.57 Aligned_cols=99 Identities=22% Similarity=0.276 Sum_probs=64.3
Q ss_pred EcCeeeeccCCC----CCceEEEccC-CCceeeeecccCCCCccccccCCCCCCCCCceeeEeeccccccceeeEEeecC
Q 044684 194 FHGSLLAMSEDD----LPYRVKIKPD-GDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLKYFRFGGS 268 (545)
Q Consensus 194 ~~grLlAl~E~~----~Py~~~i~p~-~tLeTlG~~d~~g~l~~~~tAHPk~Dp~tGel~~~~~~~~~~p~l~~~~~~~~ 268 (545)
-+..|||..|.+ .-...+++++ ++|+-+++..-.|. -..|-.+||+...++.-+|.. ..+..+.+ +
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~----~p~~i~~~~~g~~l~vany~~---g~v~v~~l--~ 117 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS----SPCHIAVDPDGRFLYVANYGG---GSVSVFPL--D 117 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS----CEEEEEECTTSSEEEEEETTT---TEEEEEEE--C
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC----CcEEEEEecCCCEEEEEEccC---CeEEEEEc--c
Confidence 357799998853 3344556676 78888887664332 345677788877777777764 44677777 8
Q ss_pred CCCCCCCcee-ec---------CCCCceeeeeeeec--CeEEecC
Q 044684 269 NDGKKSRDVD-VT---------LDQPTMIHDFAITE--NCVIIPD 301 (545)
Q Consensus 269 ~~G~~~~~~~-i~---------~~~p~~~HDfaiTe--ny~V~~~ 301 (545)
.+|.+..... +. ....+..|...+++ +|+++++
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d 162 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD 162 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe
Confidence 8888765432 11 23457889999884 4776653
No 11
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=29.70 E-value=51 Score=23.78 Aligned_cols=31 Identities=23% Similarity=0.496 Sum_probs=22.2
Q ss_pred eeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEecc
Q 044684 473 MFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKAS 512 (545)
Q Consensus 473 vFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~ 512 (545)
++||.+ .+||+++-+.+...++-.+...|.+
T Consensus 4 vWvpD~---------~egfv~g~I~~~~g~~vtV~~~~G~ 34 (42)
T PF02736_consen 4 VWVPDP---------KEGFVKGEIIEEEGDKVTVKTEDGK 34 (42)
T ss_dssp EEEEES---------SSSEEEEEEEEEESSEEEEEETTTE
T ss_pred EEEeCC---------cccEEEEEEEEEcCCEEEEEECCCC
Confidence 678865 4699999999776666555555543
No 12
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=28.06 E-value=28 Score=34.61 Aligned_cols=37 Identities=19% Similarity=0.555 Sum_probs=28.2
Q ss_pred eeEEEcCeeeec-cCCCCCceEEEccCCCceeeeecccCCC
Q 044684 190 GLVYFHGSLLAM-SEDDLPYRVKIKPDGDLETIGRFSFDDQ 229 (545)
Q Consensus 190 ~v~~~~grLlAl-~E~~~Py~~~i~p~~tLeTlG~~d~~g~ 229 (545)
++..+++.+|+| |..|..|..| + .||+++|++.|.|+
T Consensus 95 Git~~gd~~y~LTw~egvaf~~d--~-~t~~~lg~~~y~Ge 132 (262)
T COG3823 95 GITKLGDYFYQLTWKEGVAFKYD--A-DTLEELGRFSYEGE 132 (262)
T ss_pred ceeeccceEEEEEeccceeEEEC--h-HHhhhhcccccCCc
Confidence 345678888888 5666666555 7 89999999999875
No 13
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=27.61 E-value=96 Score=33.15 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=45.5
Q ss_pred ccccccccccCcccceEEEEeeCCCCCCccceeEeccCcceE-eEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEE
Q 044684 418 EAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVT-KFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFV 496 (545)
Q Consensus 418 EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~-~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V 496 (545)
-|-+.+| ..||+|....- .+..+.|.-+|.++.++. ....+++.- ++.+-= ..|.-++...+
T Consensus 272 lFi~thP-----~s~~vwvd~~~-~~~~~~v~viD~~tl~~~~~i~~~~~~~---~~h~ef--------~~dG~~v~vS~ 334 (369)
T PF02239_consen 272 LFIKTHP-----DSRYVWVDTFL-NPDADTVQVIDKKTLKVVKTITPGPGKR---VVHMEF--------NPDGKEVWVSV 334 (369)
T ss_dssp --EE--T-----T-SEEEEE-TT--SSHT-EEEEECCGTEEEE-HHHHHT-----EEEEEE---------TTSSEEEEEE
T ss_pred ceeecCC-----CCccEEeeccC-CCCCceEEEEECcCcceeEEEeccCCCc---EeccEE--------CCCCCEEEEEE
Confidence 5556665 36899986321 122577999999997653 222222211 221111 13445565566
Q ss_pred eccccccceeEEEecccceEEEEEecCC
Q 044684 497 RDERREESEMVIVKASSMEQVASVKLPR 524 (545)
Q Consensus 497 ~d~~~~~S~L~VlDA~~~~~~A~v~LP~ 524 (545)
.+.+. +++|+|++++++.+++.++.
T Consensus 335 ~~~~~---~i~v~D~~Tl~~~~~i~~~t 359 (369)
T PF02239_consen 335 WDGNG---AIVVYDAKTLKEKKRIPVPT 359 (369)
T ss_dssp E--TT---EEEEEETTTTEEEEEEE--S
T ss_pred ecCCC---EEEEEECCCcEEEEEEEeeC
Confidence 65433 99999999999999999653
No 14
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=23.35 E-value=9.3e+02 Score=25.72 Aligned_cols=100 Identities=19% Similarity=0.253 Sum_probs=58.6
Q ss_pred cCeeeeccCC---CCCceEEEccC-CCceeeeecccCCCCccccccCCCCCCCCCceeeEeeccccccceeeEEeecCCC
Q 044684 195 HGSLLAMSED---DLPYRVKIKPD-GDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKPYLKYFRFGGSND 270 (545)
Q Consensus 195 ~grLlAl~E~---~~Py~~~i~p~-~tLeTlG~~d~~g~l~~~~tAHPk~Dp~tGel~~~~~~~~~~p~l~~~~~~~~~~ 270 (545)
..+||+.-|. |.--+.+||++ |.|+-+.+....|. -+.|=-+|++..-+|.-+|.. ..+.++.+ .++
T Consensus 51 ~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~----~p~yvsvd~~g~~vf~AnY~~---g~v~v~p~--~~d 121 (346)
T COG2706 51 QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGS----PPCYVSVDEDGRFVFVANYHS---GSVSVYPL--QAD 121 (346)
T ss_pred CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCC----CCeEEEECCCCCEEEEEEccC---ceEEEEEc--ccC
Confidence 4468887654 22223345564 88999888765543 236777888643466667765 34666666 888
Q ss_pred CCCCCceee-cCCC--------Cceeeeeeee--cCeEEecCce
Q 044684 271 GKKSRDVDV-TLDQ--------PTMIHDFAIT--ENCVIIPDHQ 303 (545)
Q Consensus 271 G~~~~~~~i-~~~~--------p~~~HDfaiT--eny~V~~~~p 303 (545)
|.+...+.+ .-.. .+=.|.-.+| .+|++.+|.-
T Consensus 122 G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 122 GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 988765332 2111 1224544444 5577776543
No 15
>PRK00756 acyltransferase NodA; Provisional
Probab=22.05 E-value=65 Score=30.73 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=23.2
Q ss_pred ccCC-CCCccccccccccCCCCcceeee-ecCCC
Q 044684 67 APVQ-ECPVHHGLQVVGRIPDCLRGVYV-RNGAN 98 (545)
Q Consensus 67 ~pv~-E~~~~~~l~V~G~iP~~L~Gt~~-RNGPn 98 (545)
.|.+ |..-..-++|.-++.+|=.||++ ||||-
T Consensus 162 pptr~ed~lv~V~Pi~r~~seWP~Gt~IdRNGpe 195 (196)
T PRK00756 162 PPTRTEDVLVVVFPIGRPMSEWPSGTLIERNGPE 195 (196)
T ss_pred CCccccccEEEEEeCCCccccCCCCceecCCCCC
Confidence 4443 33334456788899999999987 99995
No 16
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=21.51 E-value=3e+02 Score=26.16 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=40.6
Q ss_pred cceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceEEEEEecCCc
Q 044684 447 GIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPRR 525 (545)
Q Consensus 447 gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~LP~r 525 (545)
.|..+|..+|+.. |.+.-+.-.+.++.-+ --++|+|++. +....|..+|+++-+...+..++..
T Consensus 4 ~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~---------~~~~~~v~~~-----~~~~~l~~~d~~tG~~~W~~~~~~~ 67 (238)
T PF13360_consen 4 TLSALDPRTGKEL-WSYDLGPGIGGPVATA---------VPDGGRVYVA-----SGDGNLYALDAKTGKVLWRFDLPGP 67 (238)
T ss_dssp EEEEEETTTTEEE-EEEECSSSCSSEEETE---------EEETTEEEEE-----ETTSEEEEEETTTSEEEEEEECSSC
T ss_pred EEEEEECCCCCEE-EEEECCCCCCCccceE---------EEeCCEEEEE-----cCCCEEEEEECCCCCEEEEeecccc
Confidence 4788999998763 5453211011111001 1256777766 3668999999999998888888654
Done!