Query 044684
Match_columns 545
No_of_seqs 229 out of 1061
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:42:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3npe_A 9-CIS-epoxycarotenoid d 100.0 1E-141 3E-146 1164.3 44.2 518 21-544 6-528 (529)
2 2biw_A Apocarotenoid-cleaving 100.0 5E-118 2E-122 971.1 33.1 443 63-537 21-490 (490)
3 3kvc_A Retinoid isomerohydrola 100.0 5E-113 2E-117 940.2 29.4 452 62-537 12-533 (533)
4 3mbr_X Glutamine cyclotransfer 51.8 25 0.00086 34.0 6.6 27 432-460 31-57 (243)
5 1qks_A Cytochrome CD1 nitrite 45.0 1.1E+02 0.0037 33.0 11.1 77 430-523 207-285 (567)
6 3nok_A Glutaminyl cyclase; bet 36.8 1E+02 0.0035 30.2 8.3 94 398-522 79-173 (268)
7 1fwx_A Nitrous oxide reductase 36.8 92 0.0031 34.1 8.7 94 418-524 86-195 (595)
8 3c75_H MADH, methylamine dehyd 34.7 1.3E+02 0.0043 31.4 9.2 79 432-523 85-168 (426)
9 2iwa_A Glutamine cyclotransfer 33.1 1.4E+02 0.0049 28.9 8.7 97 398-523 48-145 (266)
10 3nol_A Glutamine cyclotransfer 32.8 44 0.0015 32.7 4.9 88 433-524 54-166 (262)
11 4guc_A Protein BA_2500; virule 31.6 53 0.0018 28.3 4.5 49 242-300 34-88 (120)
12 3c5j_A HLA class II histocompa 25.0 3.2E+02 0.011 24.3 9.1 106 23-133 53-165 (181)
13 2iwa_A Glutamine cyclotransfer 24.6 1.8E+02 0.0062 28.1 7.7 73 432-523 32-105 (266)
14 2mad_H Methylamine dehydrogena 20.9 3.8E+02 0.013 26.6 9.7 80 431-523 32-116 (373)
15 1iak_A MHC class II I-AK; hist 20.8 4E+02 0.014 24.2 9.0 107 23-134 57-170 (199)
16 3c75_H MADH, methylamine dehyd 20.6 2.9E+02 0.0099 28.6 8.8 110 397-524 102-220 (426)
No 1
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}
Probab=100.00 E-value=1e-141 Score=1164.33 Aligned_cols=518 Identities=62% Similarity=1.090 Sum_probs=485.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhhccc-ccCCCCCCCCCCceeeecccccCCCCCccccccccccCCCCcceeeeecCCCC
Q 044684 21 PHHLNPLQKLAASALDKIEDSLIGFF-EKGKSLPKTVDPTVQISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANP 99 (545)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~l~g~f~pv~E~~~~~~l~V~G~iP~~L~Gt~~RNGPnp 99 (545)
.++|||+|++|+++||++|++|++++ ++++||++++||+++|+|||+||+|+++..+++|+|+||+||+|+||||||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpnP 85 (529)
T 3npe_A 6 KKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANP 85 (529)
T ss_dssp --CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBCC
T ss_pred cCCCChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCCc
Confidence 46799999999999999999999986 88999999999999999999999999988899999999999999999999999
Q ss_pred CCCCCCcCccccCCCcEEEEEeCCCCce-eeeeecccchhhhHHHhcCCCCCCccccccccchhHHHHHHHHHhhccccc
Q 044684 100 MFVPSGGHHLFDGDGMIHAVTLGHANQA-SYSCRYTQTSRLVQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLV 178 (545)
Q Consensus 100 ~~~~~~~~H~FDGdGMlh~~~~~~~G~a-~y~~R~v~T~~~~~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~~~g~~ 178 (545)
+|++..++||||||||||+|+|++ |+| +|+||||||++|++|+++|+++|++++|++++.++++|..+++.|...+++
T Consensus 86 ~f~~~~~~HwFDGdGmlh~~~f~~-G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (529)
T 3npe_A 86 CFDPVAGHHLFDGDGMVHALRIRN-GAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLV 164 (529)
T ss_dssp SSCCSSCCCGGGSCBEEEEEEEET-TEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSC
T ss_pred CcCCcCCCccCCCCceEEEEEECC-CccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccc
Confidence 998888899999999999999999 999 999999999999999999999999999999999999999888888877777
Q ss_pred cCCCCceeeeeeeEEEcCeeeeccCCCCCceEEEccCCCceeeeecccCCCCccccccCCCCCCCCCceeeEeecccccc
Q 044684 179 DGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLETIGRFSFDDQLDCPMIAHPKVDPVTSDLHALSYNVVRKP 258 (545)
Q Consensus 179 ~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~~i~p~~tLeTlG~~d~~g~l~~~~tAHPk~Dp~tGel~~~~~~~~~~p 258 (545)
+...++++|||||++|+||||||||+|+||+++|||++||||+|++||+|+|.++||||||+||+||||++|+|+.+.+|
T Consensus 165 ~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p 244 (529)
T 3npe_A 165 DPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRP 244 (529)
T ss_dssp CGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSC
T ss_pred cccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCC
Confidence 76666789999999999999999999999999999866999999999999999999999999999999999999987789
Q ss_pred ceeeEEeecCCCCCCCCceeecCCCCceeeeeeeecCeEEecCceeEEeecccccCCCceEecCCCcceeccccCCCCCC
Q 044684 259 YLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFAITENCVIIPDHQVVFKLSEMIRGGSPVIFDKNKTSRFGVLSKNDADE 338 (545)
Q Consensus 259 ~l~~~~~~~~~~G~~~~~~~i~~~~p~~~HDfaiTeny~V~~~~pl~~~~~~m~~g~~~~~~d~~~~tr~~vipR~~~~~ 338 (545)
+++|+++ +++|++.+.++|+++.|+|||||||||||+||+++|+++|+.+|++|++++.|++++++|||||||++++.
T Consensus 245 ~~~~~~~--~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~g~~~~~~~p~~~tr~~VipR~~~~~ 322 (529)
T 3npe_A 245 YLKYFYF--RPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADA 322 (529)
T ss_dssp CCEEEEE--CTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTTTCCSEEECTTSCCEEEEEETTCSSG
T ss_pred cEEEEEE--CCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhCCCCceEECCCCCcEEEEEECCCCCC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCceEEeCCceeeeeeccccccCCCCCcccEEEEcccCCCCCcccccCCCcccchhheeeecccCCccccccccc---cc
Q 044684 339 SGIQWIDVPNCFCFHLWNAWEENNDDGDRNVVVIGSCMDPPDSVFNEHQDPVRSELSEIRLNLKTGESTRRVVVS---GM 415 (545)
Q Consensus 339 ~~v~w~e~p~~f~fH~~NA~Ee~~~~~~~~vvv~~~~~~~~~~~~~~~~~~l~~~l~r~~ldl~tg~~~~~~l~~---~~ 415 (545)
+.|+||++|+||+||++|||||+++|+ ||++.||+.+.+.+++...+++++.|+|||||+++|+++++.|.+ +.
T Consensus 323 ~~vrw~e~~~~f~fH~~NA~Ee~~~~~---ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~ 399 (529)
T 3npe_A 323 SEMAWVDVPDCFCFHLWNAWEDEATGE---VVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQV 399 (529)
T ss_dssp GGCEEEECTTCEEEEEEEEEEETTTTE---EEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCC
T ss_pred CceEEEEcCCEEEEEecccEecCCCCe---EEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccccCc
Confidence 789999999999999999999853467 999999988877788766677889999999999999999888873 37
Q ss_pred ccccccccccccCcccceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEE
Q 044684 416 NLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGF 495 (545)
Q Consensus 416 ~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~ 495 (545)
++|||+||++|+||+|||+|+++.++++++++|+|+|++||+++.|++|+++|+|||+||||+++.+++++|||||||++
T Consensus 400 ~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~ 479 (529)
T 3npe_A 400 NLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTF 479 (529)
T ss_dssp CEEEEEECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCEEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEE
T ss_pred cccCceEChhHcCCccceEEEeccCCCCCcceEEEEecCCCceEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEE
Confidence 89999999999999999999999888888999999999999999999999999999999999951111568999999999
Q ss_pred EeccccccceeEEEecccceEEEEEecCCccccccceeecCchhhhccc
Q 044684 496 VRDERREESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQELSGQV 544 (545)
Q Consensus 496 V~d~~~~~S~L~VlDA~~~~~~A~v~LP~rvP~GFHG~fv~~~~l~~~~ 544 (545)
|+|+.+++|+|+||||++|+++||++||+||||||||+|++++||++|+
T Consensus 480 V~d~~~~~S~LlILDA~~l~~vArv~LP~rvP~GfHG~wv~~~~l~~q~ 528 (529)
T 3npe_A 480 VHDERAGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA 528 (529)
T ss_dssp EEBSSCCCEEEEEEETTTTEEEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred EEECCCCcEEEEEEeCCCCccceEEECCCCCCCCccccccCHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999997
No 2
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*
Probab=100.00 E-value=4.9e-118 Score=971.06 Aligned_cols=443 Identities=27% Similarity=0.439 Sum_probs=394.5
Q ss_pred ecccccCCCCCcccccc-ccccCCCCcceeeeecCCCCCCCC-CCcCccccCCCcEEEEEe-CCCCceeeeeecccchhh
Q 044684 63 SGNFAPVQECPVHHGLQ-VVGRIPDCLRGVYVRNGANPMFVP-SGGHHLFDGDGMIHAVTL-GHANQASYSCRYTQTSRL 139 (545)
Q Consensus 63 ~g~f~pv~E~~~~~~l~-V~G~iP~~L~Gt~~RNGPnp~~~~-~~~~H~FDGdGMlh~~~~-~~~G~a~y~~R~v~T~~~ 139 (545)
+++|+|+.+|.+.. +. |+|+||+||+|+|||||||+++.+ ...+||||||||||+|+| ++ |+|+|+||||||++|
T Consensus 21 ~~~f~~~~~E~~~~-l~~V~G~IP~~L~Gt~~RnGP~~~~~~~~~~~H~FDGdGmlh~~~f~~~-G~v~y~~R~v~T~~~ 98 (490)
T 2biw_A 21 LRGYQSQPQEWDYW-VEDVEGSIPPDLQGTLYRNGPGLLEIGDRPLKHPFDGDGMVTAFKFPGD-GRVHFQSKFVRTQGY 98 (490)
T ss_dssp HHTTSCCCSCEEEE-CCCEEECCCTTCCEEEEECCBCCSEETTEECSSGGGSCBEEEEEEECSS-SCCEEEEEECCCHHH
T ss_pred hhhccCccccCCcc-cceEEeCCCCCCCeEEEEeCCCcCcCCCCcccCccCCCCeEEEEEECCC-CEEEEEcceEeCHHH
Confidence 57889997665554 65 999999999999999999988654 456899999999999999 88 999999999999999
Q ss_pred hHHHhcCCCCCCccccccccchhHHHHHHHHHhhccccccCCCCceeeeeeeEEEcCeeeeccCCCCCceEEEccCCCce
Q 044684 140 VQEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLE 219 (545)
Q Consensus 140 ~~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~~~g~~~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~~i~p~~tLe 219 (545)
++|+++||++|+++||+..+...+.+ .++ ...+|+|||+|++|+||||||||+|.||+|| | .|||
T Consensus 99 ~~e~~ag~~~~~~~fg~~~~~~~~~~--------~~~----~~~~~~aNT~v~~~~g~llAl~E~~~p~~ld--p-~tLe 163 (490)
T 2biw_A 99 VEEQKAGKMIYRGVFGSQPAGGWLKT--------IFD----LRLKNIANTNITYWGDRLLALWEGGQPHRLE--P-SNLA 163 (490)
T ss_dssp HHHHHHTSCCSBCTTSCCCSSTHHHH--------TTC----CCBCCCCCSEEEEETTEEEEECTTSCCEEEC--T-TTCC
T ss_pred HHHHHhCCcccccccccCCCCchhhh--------hcc----cccCCCCEEEEEEECCEEEEEEcCCCCEecc--c-cccc
Confidence 99999999999998898765432211 111 1246899999999999999999999999987 8 8999
Q ss_pred eeeecccCCCC-cc-ccccCCCCCCC------CCceeeEeeccccccceeeEEeecCCCCCCCCceeecCCCCceeeeee
Q 044684 220 TIGRFSFDDQL-DC-PMIAHPKVDPV------TSDLHALSYNVVRKPYLKYFRFGGSNDGKKSRDVDVTLDQPTMIHDFA 291 (545)
Q Consensus 220 TlG~~d~~g~l-~~-~~tAHPk~Dp~------tGel~~~~~~~~~~p~l~~~~~~~~~~G~~~~~~~i~~~~p~~~HDfa 291 (545)
|+|++||+|+| ++ .||||||+||+ ||||++|+|+....+.++|+++ |++|++.+.+.|+++.++||||||
T Consensus 164 T~G~~d~~g~l~~~~~~tAHPk~Dp~~~~~~gtgel~~fg~~~~~~~~~~~~~~--~~~G~~~~~~~~~~~~~~~~HDfa 241 (490)
T 2biw_A 164 TIGLDDLGGILAEGQPLSAHPRIDPASTFDGGQPCYVTFSIKSSLSSTLTLLEL--DPQGKLLRQKTETFPGFAFIHDFA 241 (490)
T ss_dssp EEEECCTTTTSCTTCCCCSCCEEESSCTTTTTCCEEEEEEEEESSEEEEEEEEE--CTTSCEEEEEEEEEESCCCCCCCE
T ss_pred EeeeeccCCcccCCcccccCceECccccccCCCCeEEEEEecCCCCcEEEEEEE--CCCCCEEeeEEEeCCCCceEeeee
Confidence 99999999999 54 79999999999 9999999999865556999999 999999999999999999999999
Q ss_pred eecCeEEecCceeEEeecccccC----CCceEecCCCcceeccccCCCCCCCCceEEeCCceeeeeeccccccCCCCCcc
Q 044684 292 ITENCVIIPDHQVVFKLSEMIRG----GSPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAWEENNDDGDR 367 (545)
Q Consensus 292 iTeny~V~~~~pl~~~~~~m~~g----~~~~~~d~~~~tr~~vipR~~~~~~~v~w~e~p~~f~fH~~NA~Ee~~~~~~~ 367 (545)
|||||+||+++|+.+++.+|+.| ..++.|++++++|||||||+ + +.++||++|+||+||++||||| +|+
T Consensus 242 iTeny~V~~~~P~~~~~~~~~~g~~~~~~~~~~~p~~~tr~~VipR~-~--~~v~~f~~~~~f~fH~~NA~Ee--~~~-- 314 (490)
T 2biw_A 242 ITPHYAIFLQNNVTLNGLPYLFGLRGAGECVQFHPDKPAQIILVPRD-G--GEIKRIPVQAGFVFHHANAFEE--NGK-- 314 (490)
T ss_dssp ECSSEEEEEECCEEECCHHHHTTSSCGGGGEEECTTSCEEEEEEETT-S--CCCEEEEECCCEEEEEEEEEEE--TTE--
T ss_pred ccCCEEEEEeCCeEEcHHHHhhccCCccceeEeCCCCCcEEEEEECC-C--CccEEEecCCCeEEecccceec--CCe--
Confidence 99999999999999999999865 35799999999999999998 3 5699999999999999999998 678
Q ss_pred cEEEEcccCCCCCcc-----ccc--CCCcccchhheeeecccCCcccccccccccccccccccccccCcccceEEEEeeC
Q 044684 368 NVVVIGSCMDPPDSV-----FNE--HQDPVRSELSEIRLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVYLAIAD 440 (545)
Q Consensus 368 ~vvv~~~~~~~~~~~-----~~~--~~~~l~~~l~r~~ldl~tg~~~~~~l~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~ 440 (545)
||+|.|++.+.+.+ +.. ..+...++|+||+|||++|+++++.|. +.++|||+||++|.||+|||+|+++.+
T Consensus 315 -Iv~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~R~~i~l~~g~v~~~~l~-~~~~EfP~In~~~~G~~~Ry~Y~~~~~ 392 (490)
T 2biw_A 315 -IILDSICYNSLPQVDTDGDFRSTNFDNLDPGQLWRFTIDPAAATVEKQLMV-SRCCEFPVVHPQQVGRPYRYVYMGAAH 392 (490)
T ss_dssp -EEEEEEEESCCCCCCTTCCGGGCCGGGSCCCEEEEEEEETTTTEEEEEEEE-CSCEEEEECCGGGTTSCCSEEEEEECS
T ss_pred -EEEEEeccCCcccccccccccccccccCCCceEEEEEEECCCCceEEEecc-CCcccccccChhhCCceeeeEEEEeec
Confidence 99999999765431 111 012235789999999999999998888 899999999999999999999999875
Q ss_pred ---CCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceEE
Q 044684 441 ---PWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQV 517 (545)
Q Consensus 441 ---~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~~ 517 (545)
+++++++|+|+|++||+.+.|++|+++|+|||+||||++ +++|||||||++|+|+++++|+|+||||++|+++
T Consensus 393 ~~~~~~~~~~l~K~D~~tg~~~~~~~g~g~~~~EPvFVPrp~----~~~EDDG~ll~~V~d~~~~~S~l~IlDA~~~~~~ 468 (490)
T 2biw_A 393 HSTGNAPLQAILKVDLESGTETLRSFAPHGFAGEPIFVPRPG----GVAEDDGWLLCLIYKADLHRSELVILDAQDITAP 468 (490)
T ss_dssp SSSSCCCCCEEEEEETTTTEEEEEECTTTEECCCCEEEECTT----CCSTTCEEEEEEEEETTTTEEEEEEEETTCTTSC
T ss_pred CCCCCCCCCeEEEEECCCCCEEEEECCCCccccCCEEecCCC----CCCCCCcEEEEEEEeCCCCceeEEEEccCCCCcC
Confidence 466789999999999999999999999999999999997 7899999999999999999999999999999964
Q ss_pred --EEEecCCccccccceeecCc
Q 044684 518 --ASVKLPRRVPYGFHGTFISE 537 (545)
Q Consensus 518 --A~v~LP~rvP~GFHG~fv~~ 537 (545)
||++||+||||||||+|+++
T Consensus 469 pvArv~lP~rvP~GfHG~wv~~ 490 (490)
T 2biw_A 469 AIATLKLKHHIPYPLHGSWAQT 490 (490)
T ss_dssp CSEEEECSSCCCCCCCEEEEEC
T ss_pred ceEEEeCCCcCCCCccccccCC
Confidence 99999999999999999863
No 3
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A
Probab=100.00 E-value=5.2e-113 Score=940.19 Aligned_cols=452 Identities=19% Similarity=0.261 Sum_probs=365.7
Q ss_pred eecccccCCCCCccccccccccCCCCcceeeeecCCCCCC-CCCCcCccccCCCcEEEEEeCCCCceeeeeecccchhhh
Q 044684 62 ISGNFAPVQECPVHHGLQVVGRIPDCLRGVYVRNGANPMF-VPSGGHHLFDGDGMIHAVTLGHANQASYSCRYTQTSRLV 140 (545)
Q Consensus 62 l~g~f~pv~E~~~~~~l~V~G~iP~~L~Gt~~RNGPnp~~-~~~~~~H~FDGdGMlh~~~~~~~G~a~y~~R~v~T~~~~ 140 (545)
++.+|+|++|+++...++|+|+||+||+|+|||||||++. .+...+||||||||||+|+|++ |+|+|+||||||++|+
T Consensus 12 ~~~~f~~~~E~~~p~~l~V~G~IP~~L~Gtl~RNGPg~~~~g~~~~~HwFDGdGmlh~~~~~~-G~v~y~~R~v~T~~~~ 90 (533)
T 3kvc_A 12 YKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKE-GHVTYHRRFIRTDAYV 90 (533)
T ss_dssp GGGGGSCCCCCSSCEECEEEECCCTTCCEEEEEEEECCCEETTEECCBTTTSCEEEEEEEEET-TEEEEEEEECCCHHHH
T ss_pred hhhhcCcccccCCceeeeEEeeCCCCCceEEEEeCCCccccCCcccccccCCCCEEEEEEEeC-CEEEEEEEEecCHHHH
Confidence 6789999999988888999999999999999999999873 3345689999999999999999 9999999999999999
Q ss_pred HHHhcCCCCCCccccccccchhHHHHHHHHHhhccccccCCCCceeeeeeeEEEcCeeeeccCCCCCceEEEccCCCcee
Q 044684 141 QEAKYGKPVFPKPIGELHGHLGLARLGLFMARAGAGLVDGSRGMGVANAGLVYFHGSLLAMSEDDLPYRVKIKPDGDLET 220 (545)
Q Consensus 141 ~e~~ag~~~~~~~~g~~~~~~~~~r~~~~~~r~~~g~~~~~~~~~~aNt~v~~~~grLlAl~E~~~Py~~~i~p~~tLeT 220 (545)
+|+++||+++++ ||++..... +...+.|.. ........+++|||||++|+||||||||++.||+|| | .||||
T Consensus 91 ~e~~agr~~~~~-fg~~~~~~p---~~~~~~~~~-~~~~~~~~~~~ANt~v~~~~g~LlAl~E~~~p~~iD--p-~tLeT 162 (533)
T 3kvc_A 91 RAMTEKRIVITE-FGTCAFPDP---CKNIFSRFF-SYFRGVEVTDNALVNIYPVGEDYYACTETNFITKVN--P-ETLET 162 (533)
T ss_dssp HHHHHTSCCSCB-TTBCC-----------------------CCCCCCCSEEEEETTEEEEECSSSEEEEEC--T-TTCCE
T ss_pred HHHHcCCcceec-cCcccCCcc---hhhHHHHHH-HhhccCCCCCCCEEEEEEECCEEEEEEcCCcCEEeC--h-HHccc
Confidence 999999999988 888642211 001111211 111111346899999999999999999998888776 8 79999
Q ss_pred eeecccCCCCc-cccccCCCCCCCCCceeeEeeccccc--cceeeEEeecCCCCC-----CCC-c--eee---cCCCCce
Q 044684 221 IGRFSFDDQLD-CPMIAHPKVDPVTSDLHALSYNVVRK--PYLKYFRFGGSNDGK-----KSR-D--VDV---TLDQPTM 286 (545)
Q Consensus 221 lG~~d~~g~l~-~~~tAHPk~Dp~tGel~~~~~~~~~~--p~l~~~~~~~~~~G~-----~~~-~--~~i---~~~~p~~ 286 (545)
+|++||+|+|+ ..||||||+|| |||||+|+|+.+.+ +.+.++++ ++++. +.+ . ++| +++.|+|
T Consensus 163 ~G~~d~~g~l~~~~~tAHPk~Dp-tGel~~fg~~~~~~~~~~y~v~~~--~~~~~~~~~~~~~~~v~~~i~~~~~~~p~~ 239 (533)
T 3kvc_A 163 IKQVDLCNYVSVNGATAHPHIEN-DGTVYNIGNCFGKNFSIAYNIVKI--PPLQADKEDPISKSEIVVQFPCSDRFKPSY 239 (533)
T ss_dssp EEEEEHHHHSSCSCCCSCCEECT-TSCEEEEEEECC---CCEEEEEEE--CCCCTTCCCGGGGCEEEEEEECSSTTCCBC
T ss_pred ccccccCCccCCCccCCCCccCC-CCCEEEEeeccCCCCCcEEEEEEE--CccccccccccccceeEEeeccccCCCCce
Confidence 99999999997 57999999999 99999999998654 45566666 75531 222 1 234 3568999
Q ss_pred eeeeeeecCeEEecCceeEEeecccccC----C----CceEecCCCcceeccccCCCCCCCCceEEeCCceeeeeecccc
Q 044684 287 IHDFAITENCVIIPDHQVVFKLSEMIRG----G----SPVIFDKNKTSRFGVLSKNDADESGIQWIDVPNCFCFHLWNAW 358 (545)
Q Consensus 287 ~HDfaiTeny~V~~~~pl~~~~~~m~~g----~----~~~~~d~~~~tr~~vipR~~~~~~~v~w~e~p~~f~fH~~NA~ 358 (545)
||||||||||+||+++|+++|+.+|+.| + +++.|+|++++|||||||++++. .++||++++||+||++|||
T Consensus 240 iHDFaiTeny~Vf~~~P~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~tr~~VipR~~~~~-~~~~~~~~~~f~fH~~NA~ 318 (533)
T 3kvc_A 240 VHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKY-INNKYRTSPFNLFHHINTY 318 (533)
T ss_dssp CCCCEECSSEEEEEECSEEEC-----------CCCSGGGEEECSSCCEEEEEEETTTTEE-EEEEEEECCEEEEEEEEEE
T ss_pred eeeeeecCCEEEEEeCCeEEcHHHHhhcccccCCChHHheeecCCCCcEEEEEECCCCCc-ccEEEEeCCeeEEeeeeeE
Confidence 9999999999999999999999999876 3 36999999999999999997542 3578999999999999999
Q ss_pred ccCCCCCcccEEEEcccCCCCCcccccC-----C-----------CcccchhheeeecccCCc-----------------
Q 044684 359 EENNDDGDRNVVVIGSCMDPPDSVFNEH-----Q-----------DPVRSELSEIRLNLKTGE----------------- 405 (545)
Q Consensus 359 Ee~~~~~~~~vvv~~~~~~~~~~~~~~~-----~-----------~~l~~~l~r~~ldl~tg~----------------- 405 (545)
|| +|+ ||+|.|++.+...+++.. . ....++|+||+|||++++
T Consensus 319 Ee--~~~---Iv~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~R~~l~l~~~~~~~~~nl~~~~~~~~~a 393 (533)
T 3kvc_A 319 ED--HEF---LIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATA 393 (533)
T ss_dssp EE--TTE---EEEEEEEEESSSCGGGGCBHHHHTSCHHHHHHHHTTSCEEEEEEEEEESCCCGGGTTSBCCCCTTCCCEE
T ss_pred Ee--CCE---EEEEEeeeCCchhhhhhhhhhhhcccchhccccccccCCceEEEEEEeCCccccccccccccccccccee
Confidence 98 678 999999998633444321 0 123467999999998751
Q ss_pred ---------cccccccc-cc-ccccccccc-cccCcccceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcce
Q 044684 406 ---------STRRVVVS-GM-NLEAGQVNR-ALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPM 473 (545)
Q Consensus 406 ---------~~~~~l~~-~~-~~EfP~In~-~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPv 473 (545)
++++.|.+ +. ++|||+||+ +|.||+|||+|+++.+ .+++++|+|+|++||+.+.| +++++|+|||+
T Consensus 394 ~~~~~~~~~~~~~~l~~~~~~~~EfP~In~~~~~Gr~~Ry~Y~~~~~-~~~~~~l~K~D~~tg~~~~w-~~~~~~~~EPi 471 (533)
T 3kvc_A 394 ILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYGGKPYTYAYGLGLN-HFVPDRLCKLNVKTKETWVW-QEPDSYPSEPI 471 (533)
T ss_dssp EECTTSEEEEECEEEECBTTEEEEEEECCHHHHTTSCCCEEEEEEEE-TTEEEEEEEEETTTCCEEEE-CCTTCBCCCCE
T ss_pred eeccCCceeeeeeeeccCCcccccCceECHHHhCCCcccEEEEeccC-CCCCceeEEEEcCCCCEEEE-eCCCccccCce
Confidence 23455552 25 899999999 7999999999998876 46789999999999999887 68999999999
Q ss_pred eecCCCCCCCCCCCCCceEEEEEecccc--ccceeEEEecccceEEEEEecCCccccccceeecCc
Q 044684 474 FVPQNSKNVGSGREDEGFIMGFVRDERR--EESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISE 537 (545)
Q Consensus 474 FVPr~~~~~~~~~EDDG~ll~~V~d~~~--~~S~L~VlDA~~~~~~A~v~LP~rvP~GFHG~fv~~ 537 (545)
||||++ +++|||||||++|+|+.+ .+|+|+||||++|+++|||+||+||||||||+|+++
T Consensus 472 FVPrp~----~~~EDDG~lLs~V~d~~~~~~~s~LlILDA~~l~~vArv~lP~rvP~GfHG~w~~~ 533 (533)
T 3kvc_A 472 FVSHPD----ALEEDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKKS 533 (533)
T ss_dssp EEECTT----CCSTTCEEEEEEEECCSTTSCSEEEEEEETTTCCEEEEEEESSCCCCCCEEEEEEC
T ss_pred eecCCC----CCCCCCcEEEEEEEeCCcCCCccEEEEEeCCCChhhEEEEeCCCCCCCccccccCC
Confidence 999997 789999999999999986 557999999999999999999999999999999874
No 4
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=51.81 E-value=25 Score=34.00 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=18.2
Q ss_pred ceEEEEeeCCCCCCccceeEeccCcceEe
Q 044684 432 RYVYLAIADPWPKCSGIAKVDLGTGEVTK 460 (545)
Q Consensus 432 Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~ 460 (545)
...|.....- .-+.|.++|++||++..
T Consensus 31 ~~LyestG~~--g~S~v~~vD~~tgkv~~ 57 (243)
T 3mbr_X 31 GHLYESTGET--GRSSVRKVDLETGRILQ 57 (243)
T ss_dssp TEEEEEECCT--TSCEEEEEETTTCCEEE
T ss_pred CEEEEECCCC--CCceEEEEECCCCCEEE
Confidence 4567665431 13679999999998654
No 5
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=44.98 E-value=1.1e+02 Score=32.99 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=46.4
Q ss_pred ccceEEEEeeCCCCCCccceeEecc--CcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeE
Q 044684 430 KTRYVYLAIADPWPKCSGIAKVDLG--TGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMV 507 (545)
Q Consensus 430 ~~Ry~Y~~~~~~~~~~~gi~K~Dl~--tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~ 507 (545)
..||+|.+..+ +.|..+|+. +++... .... +.+|.-+.=.. -..-|..||++.-++ ...+.
T Consensus 207 DGr~lyv~~~d-----g~V~viD~~~~t~~~v~-~i~~---G~~P~~ia~s~----~~~pDGk~l~v~n~~----~~~v~ 269 (567)
T 1qks_A 207 SGRYLFVIGRD-----GKVNMIDLWMKEPTTVA-EIKI---GSEARSIETSK----MEGWEDKYAIAGAYW----PPQYV 269 (567)
T ss_dssp TSCEEEEEETT-----SEEEEEETTSSSCCEEE-EEEC---CSEEEEEEECC----STTCTTTEEEEEEEE----TTEEE
T ss_pred CCCEEEEEcCC-----CeEEEEECCCCCCcEeE-EEec---CCCCceeEEcc----ccCCCCCEEEEEEcc----CCeEE
Confidence 46799976532 469999996 665443 2322 33454333210 000144577666543 36788
Q ss_pred EEecccceEEEEEecC
Q 044684 508 IVKASSMEQVASVKLP 523 (545)
Q Consensus 508 VlDA~~~~~~A~v~LP 523 (545)
|+|+.+++...++.+.
T Consensus 270 ViD~~t~~~~~~i~~~ 285 (567)
T 1qks_A 270 IMDGETLEPKKIQSTR 285 (567)
T ss_dssp EEETTTCCEEEEEECC
T ss_pred EEECCCCcEEEEEecc
Confidence 9999999988877764
No 6
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=36.80 E-value=1e+02 Score=30.21 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred eecccCCcccccccccccccccccccccccCcccceEEEEeeCCCCCCccceeEeccCcc-eEeEEecCcccCCcceeec
Q 044684 398 RLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGE-VTKFMYGAHRFGGEPMFVP 476 (545)
Q Consensus 398 ~ldl~tg~~~~~~l~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~-~~~~~~g~~~~~~EPvFVP 476 (545)
++|++||++.++. . + +..=..=.....+..|.+.... +-+.++|.+|.+ ...+.++..-+
T Consensus 79 ~iD~~Tgkv~~~~-l-~-----~~~FgeGit~~g~~Ly~ltw~~----~~v~V~D~~Tl~~~~ti~~~~eGw-------- 139 (268)
T 3nok_A 79 QLSLESAQPVWME-R-L-----GNIFAEGLASDGERLYQLTWTE----GLLFTWSGMPPQRERTTRYSGEGW-------- 139 (268)
T ss_dssp ECCSSCSSCSEEE-E-C-----TTCCEEEEEECSSCEEEEESSS----CEEEEEETTTTEEEEEEECSSCCC--------
T ss_pred EEECCCCcEEeEE-C-C-----CCcceeEEEEeCCEEEEEEccC----CEEEEEECCcCcEEEEEeCCCcee--------
Q ss_pred CCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceEEEEEec
Q 044684 477 QNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKL 522 (545)
Q Consensus 477 r~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~L 522 (545)
+-..|.+.|+.. | +.+.|.++|+++++..+++.+
T Consensus 140 -------GLt~Dg~~L~vS--d---Gs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 140 -------GLCYWNGKLVRS--D---GGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp -------CEEEETTEEEEE--C---SSSEEEEECTTTCCEEEEEEC
T ss_pred -------EEecCCCEEEEE--C---CCCEEEEEcCCCCeEEEEEEe
No 7
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=36.77 E-value=92 Score=34.12 Aligned_cols=94 Identities=11% Similarity=0.087 Sum_probs=55.0
Q ss_pred ccccccccc-cCc-ccceEEEEeeCCCCCCccceeEeccCcceEeE-EecCcccCCcceeecCCCCCCCCCCCCCceEEE
Q 044684 418 EAGQVNRAL-LGQ-KTRYVYLAIADPWPKCSGIAKVDLGTGEVTKF-MYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMG 494 (545)
Q Consensus 418 EfP~In~~~-~Gr-~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~-~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~ 494 (545)
+.+.++-.+ .|. ..||+|.+..+ -+.|+++|+.+.++..- ..+.+.- -+-+.+-+ -.|.+||++
T Consensus 86 d~hh~~~s~t~g~~DG~~lfVnd~~----~~rVavIdl~t~~~~~ii~ip~g~~-phg~~~~~--------~p~~~~v~~ 152 (595)
T 1fwx_A 86 DLHHVHMSFTEGKYDGRFLFMNDKA----NTRVARVRCDVMKCDAILEIPNAKG-IHGLRPQK--------WPRSNYVFC 152 (595)
T ss_dssp CBCCEEEEEETTEEEEEEEEEEETT----TTEEEEEETTTTEEEEEEECSSCCS-EEEEEECC--------SSBCSEEEE
T ss_pred CCCccccCCCCCCcCCCEEEEEcCC----CCEEEEEECCCceEeeEEeCCCCCC-Ccceeeee--------cCCCcEEEE
Confidence 444444444 233 35899986432 25699999999886542 1221211 12222211 024566655
Q ss_pred EE-------------eccccccceeEEEecccceEEEEEecCC
Q 044684 495 FV-------------RDERREESEMVIVKASSMEQVASVKLPR 524 (545)
Q Consensus 495 ~V-------------~d~~~~~S~L~VlDA~~~~~~A~v~LP~ 524 (545)
.- .+.+...+.+-|+|+.+|+..++|.++.
T Consensus 153 ~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg 195 (595)
T 1fwx_A 153 NGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG 195 (595)
T ss_dssp EECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS
T ss_pred ecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC
Confidence 42 2344567789999999999889988854
No 8
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=34.70 E-value=1.3e+02 Score=31.37 Aligned_cols=79 Identities=15% Similarity=0.196 Sum_probs=47.6
Q ss_pred ceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccc-----ccccee
Q 044684 432 RYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDER-----REESEM 506 (545)
Q Consensus 432 Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~-----~~~S~L 506 (545)
+++|.+........+.|..+|+.|+++..- ..-|..+ . ++-.| |..+|.+.-.... .....+
T Consensus 85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-I~vG~~P-g--ia~Sp---------Dgk~lyVan~~~~~~~~G~~~~~V 151 (426)
T 3c75_H 85 RRVYIQDPAHFAAITQQFVIDGSTGRILGM-TDGGFLP-H--PVAAE---------DGSFFAQASTVFERIARGKRTDYV 151 (426)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEE-EEECSSC-E--EEECT---------TSSCEEEEEEEEEETTEEEEEEEE
T ss_pred CEEEEECCCcCCCCCeEEEEECCCCEEEEE-EECCCCC-c--eEECC---------CCCEEEEEeccccccccCCCCCEE
Confidence 568887643111116899999999987543 4334333 2 22222 3345543332111 134589
Q ss_pred EEEecccceEEEEEecC
Q 044684 507 VIVKASSMEQVASVKLP 523 (545)
Q Consensus 507 ~VlDA~~~~~~A~v~LP 523 (545)
.|||+.+++..+++.+|
T Consensus 152 sviD~~t~~vv~~I~v~ 168 (426)
T 3c75_H 152 EVFDPVTFLPIADIELP 168 (426)
T ss_dssp EEECTTTCCEEEEEEET
T ss_pred EEEECCCCcEEEEEECC
Confidence 99999999999999987
No 9
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=33.13 E-value=1.4e+02 Score=28.88 Aligned_cols=97 Identities=13% Similarity=0.089 Sum_probs=56.7
Q ss_pred eecccCCccccccccccccccccc-ccccccCcccceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeec
Q 044684 398 RLNLKTGESTRRVVVSGMNLEAGQ-VNRALLGQKTRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVP 476 (545)
Q Consensus 398 ~ldl~tg~~~~~~l~~~~~~EfP~-In~~~~Gr~~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVP 476 (545)
.||++||++.++.-. . .-.|+. +.. .| ...|.+... -+.+..+|..|+++... +.-+ .+|+.=+-
T Consensus 48 ~iD~~tg~v~~~i~l-~-~~~fgeGi~~--~g---~~lyv~t~~----~~~v~viD~~t~~v~~~-i~~g--~~~g~glt 113 (266)
T 2iwa_A 48 QVALQTGKVENIHKM-D-DSYFGEGLTL--LN---EKLYQVVWL----KNIGFIYDRRTLSNIKN-FTHQ--MKDGWGLA 113 (266)
T ss_dssp EEETTTCCEEEEEEC-C-TTCCEEEEEE--ET---TEEEEEETT----CSEEEEEETTTTEEEEE-EECC--SSSCCEEE
T ss_pred EEECCCCCEEEEEec-C-CCcceEEEEE--eC---CEEEEEEec----CCEEEEEECCCCcEEEE-EECC--CCCeEEEE
Confidence 578889988765322 1 112221 111 12 468877643 25688899999876543 3222 13333111
Q ss_pred CCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceEEEEEecC
Q 044684 477 QNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLP 523 (545)
Q Consensus 477 r~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~LP 523 (545)
-|.++|++ -| +.+.|.++|+.+++..+++.+.
T Consensus 114 ----------~Dg~~l~v--s~---gs~~l~viD~~t~~v~~~I~Vg 145 (266)
T 2iwa_A 114 ----------TDGKILYG--SD---GTSILYEIDPHTFKLIKKHNVK 145 (266)
T ss_dssp ----------ECSSSEEE--EC---SSSEEEEECTTTCCEEEEEECE
T ss_pred ----------ECCCEEEE--EC---CCCeEEEEECCCCcEEEEEEEC
Confidence 23455553 34 3569999999999998888875
No 10
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=32.81 E-value=44 Score=32.71 Aligned_cols=88 Identities=17% Similarity=0.326 Sum_probs=45.7
Q ss_pred eEEEEeeCCCCCCccceeEeccCcceEe-EEecCcccC------CcceeecCCCCC------CCC-------CCCCCceE
Q 044684 433 YVYLAIADPWPKCSGIAKVDLGTGEVTK-FMYGAHRFG------GEPMFVPQNSKN------VGS-------GREDEGFI 492 (545)
Q Consensus 433 y~Y~~~~~~~~~~~gi~K~Dl~tg~~~~-~~~g~~~~~------~EPvFVPr~~~~------~~~-------~~EDDG~l 492 (545)
..|.+...- .-+.|.++|++||++.. ...++..|+ +.-+|+-.-.++ ... .-+.+||=
T Consensus 54 ~LyestG~~--g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~g 131 (262)
T 3nol_A 54 YFYESTGLN--GRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWG 131 (262)
T ss_dssp EEEEEEEET--TEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCCC
T ss_pred EEEEECCCC--CCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCceE
Confidence 567665431 12578899999987643 223333222 223333321100 000 01345665
Q ss_pred EEEEeccc-----cccceeEEEecccceEEEEEecCC
Q 044684 493 MGFVRDER-----REESEMVIVKASSMEQVASVKLPR 524 (545)
Q Consensus 493 l~~V~d~~-----~~~S~L~VlDA~~~~~~A~v~LP~ 524 (545)
|+ +|.+ .+.+.|.++|+.+++..+++.+..
T Consensus 132 lt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~ 166 (262)
T 3nol_A 132 LT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA 166 (262)
T ss_dssp EE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEE
T ss_pred Ee--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc
Confidence 55 2321 235678888888888888887753
No 11
>4guc_A Protein BA_2500; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: PGE; 1.40A {Bacillus anthracis}
Probab=31.59 E-value=53 Score=28.26 Aligned_cols=49 Identities=16% Similarity=0.107 Sum_probs=33.9
Q ss_pred CCCCceeeEeeccccc--cceeeEEeecC----CCCCCCCceeecCCCCceeeeeeeecCeEEec
Q 044684 242 PVTSDLHALSYNVVRK--PYLKYFRFGGS----NDGKKSRDVDVTLDQPTMIHDFAITENCVIIP 300 (545)
Q Consensus 242 p~tGel~~~~~~~~~~--p~l~~~~~~~~----~~G~~~~~~~i~~~~p~~~HDfaiTeny~V~~ 300 (545)
-.||..|.+....+.+ .-+++|++ + ++|.++|-.. |||+..+++|.+|-
T Consensus 34 lktGdtf~it~~~~~~d~g~~KIyrv--~~~~~~~g~L~RYkT--------I~d~~~~~~~~~f~ 88 (120)
T 4guc_A 34 LKHGDTFDVTIYTGGKDTGIVKIYQL--SGNENDEINLHRYKT--------IYDSGLKHNYGRFV 88 (120)
T ss_dssp EETTCEEEEEEECCSSBCCEEEEEEE--CSCTTCSCCEEEEEE--------EECCCCCTTEEEEE
T ss_pred cccCCEEEEEEEcCCCccceEEEEEE--ccCCCCCcceEEEEE--------eccCCCcCCeeEEE
Confidence 3478888777654322 24889999 6 4577776554 48889999988863
No 12
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A 1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A* 1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A 2g9h_A* 1h15_A ...
Probab=25.04 E-value=3.2e+02 Score=24.31 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=60.6
Q ss_pred CCCHHHHHH--HHHHHHHHhhhhcccccCCCCCCCCCCceeeecccccCC-CCCccccccccccCCCCcceeeeecCCCC
Q 044684 23 HLNPLQKLA--ASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQ-ECPVHHGLQVVGRIPDCLRGVYVRNGANP 99 (545)
Q Consensus 23 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~g~f~pv~-E~~~~~~l~V~G~iP~~L~Gt~~RNGPnp 99 (545)
+|+..+.++ ...-..|+..+... ...|....-|.+.+...- +.. ....+..+.|.|=-|+.++=+.+|||=.
T Consensus 53 ~w~~~~~~~~~~~~K~yL~~~l~~g---k~~l~r~~~P~v~v~~~~-~~~~~~~~~L~C~a~gFyP~~i~v~W~k~g~~- 127 (181)
T 3c5j_A 53 SFEAQGALANIAVDKANLEIMTKRS---NYTPITNVPPEVTVLTNS-PVELREPNVLICFIDKFTPPVVNVTWLRNGKP- 127 (181)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHHT---TTCCCCCBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEE-
T ss_pred cccccchHHHHHHHHHHhHHhhhhc---ccCcccccCCceecccCC-hhhcCCCCeEEEEEeEEECCCCEEEEEECCEE-
Confidence 788744333 22233455544321 233445566777664332 221 2223445668999999999999999954
Q ss_pred CCCC-CCcCccccCCCcE---EEEEeCCCCceeeeeec
Q 044684 100 MFVP-SGGHHLFDGDGMI---HAVTLGHANQASYSCRY 133 (545)
Q Consensus 100 ~~~~-~~~~H~FDGdGMl---h~~~~~~~G~a~y~~R~ 133 (545)
+... .....+.+|||.- ..+.+...-...|+|+-
T Consensus 128 ~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V 165 (181)
T 3c5j_A 128 VTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRV 165 (181)
T ss_dssp ECSSCEECCCEECTTSCEEEEEEEEECCCTTCEEEEEE
T ss_pred CCCceeecCcEECCCCCEEEEEEEEEeCCCCCEEEEEE
Confidence 2222 1234678899953 34667641234799985
No 13
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=24.62 E-value=1.8e+02 Score=28.13 Aligned_cols=73 Identities=14% Similarity=0.104 Sum_probs=43.4
Q ss_pred ceEEEEeeCCCCCCccceeEeccCcceEeE-EecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEe
Q 044684 432 RYVYLAIADPWPKCSGIAKVDLGTGEVTKF-MYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVK 510 (545)
Q Consensus 432 Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~-~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlD 510 (545)
...|.+.... .-+.|.++|+.||++..- ..+.+.| +|- +.+ +++.|. +.+ .....+.|+|
T Consensus 32 g~Lyvstg~~--~~s~v~~iD~~tg~v~~~i~l~~~~f-geG-i~~-----------~g~~ly--v~t--~~~~~v~viD 92 (266)
T 2iwa_A 32 DTLFESTGLY--GRSSVRQVALQTGKVENIHKMDDSYF-GEG-LTL-----------LNEKLY--QVV--WLKNIGFIYD 92 (266)
T ss_dssp TEEEEEECST--TTCEEEEEETTTCCEEEEEECCTTCC-EEE-EEE-----------ETTEEE--EEE--TTCSEEEEEE
T ss_pred CeEEEECCCC--CCCEEEEEECCCCCEEEEEecCCCcc-eEE-EEE-----------eCCEEE--EEE--ecCCEEEEEE
Confidence 3678765431 136899999999987543 2233222 121 111 112222 222 2446799999
Q ss_pred cccceEEEEEecC
Q 044684 511 ASSMEQVASVKLP 523 (545)
Q Consensus 511 A~~~~~~A~v~LP 523 (545)
+++++..+++..+
T Consensus 93 ~~t~~v~~~i~~g 105 (266)
T 2iwa_A 93 RRTLSNIKNFTHQ 105 (266)
T ss_dssp TTTTEEEEEEECC
T ss_pred CCCCcEEEEEECC
Confidence 9999999998877
No 14
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=20.91 E-value=3.8e+02 Score=26.58 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=45.4
Q ss_pred cceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEe--ccc---cccce
Q 044684 431 TRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVR--DER---REESE 505 (545)
Q Consensus 431 ~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~--d~~---~~~S~ 505 (545)
.+++|.+..........|..+|..++++..- ...|..+ +..|-| |..+|.+.-. +.. .....
T Consensus 32 ~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-i~~g~~p-~i~~sp-----------Dg~~lyv~n~~~~~~~rg~~~~~ 98 (373)
T 2mad_H 32 GRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VNGGFLP-NPVAAH-----------SGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CCEEEEeCCcccCCccEEEEEECCCCeEEEE-ecCCCCC-CeEECC-----------CCCEEEEEeccccccccCCCCCe
Confidence 3778887541121111788999999886532 4444322 333322 3344443321 111 11235
Q ss_pred eEEEecccceEEEEEecC
Q 044684 506 MVIVKASSMEQVASVKLP 523 (545)
Q Consensus 506 L~VlDA~~~~~~A~v~LP 523 (545)
+.|+|+.+++..+++.++
T Consensus 99 v~viD~~t~~~~~~i~~~ 116 (373)
T 2mad_H 99 VEVFDPVTFLPIADIELP 116 (373)
T ss_pred EEEEECCCCcEEEEEECC
Confidence 779999999999999887
No 15
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex, histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A 2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C 3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A* 1f3j_A*
Probab=20.75 E-value=4e+02 Score=24.15 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=60.3
Q ss_pred CCCHHHHHH--HHHHHHHHhhhhcccccCCCCCCCCCCceeeecccccCC-CCCccccccccccCCCCcceeeeecCCCC
Q 044684 23 HLNPLQKLA--ASALDKIEDSLIGFFEKGKSLPKTVDPTVQISGNFAPVQ-ECPVHHGLQVVGRIPDCLRGVYVRNGANP 99 (545)
Q Consensus 23 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~g~f~pv~-E~~~~~~l~V~G~iP~~L~Gt~~RNGPnp 99 (545)
+|+..+.++ ...-..++..+... ...|....-|.+.+...- +.. ....+..+.|.|=-|+.++=+.+|||-.
T Consensus 57 ~w~~~~~~~~~~~cK~yL~~~l~~g---k~~l~r~~~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~i~v~W~kng~~- 131 (199)
T 1iak_A 57 RFEPQGGLQNIATGKHNLEILTKRS---NSTPATNEAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKS- 131 (199)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHHH---TSCCCCCCCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEE-
T ss_pred cccccchhhHHHHHhhhhhhhhhcc---ccccccccCCCcccccCC-ccccCCCcEEEEEEeeEeCCCcEEEEEECCEE-
Confidence 788744442 22223455444321 233445566777764322 121 1223444568999999999999999954
Q ss_pred CCCC-CCcCccccCCCcE---EEEEeCCCCceeeeeecc
Q 044684 100 MFVP-SGGHHLFDGDGMI---HAVTLGHANQASYSCRYT 134 (545)
Q Consensus 100 ~~~~-~~~~H~FDGdGMl---h~~~~~~~G~a~y~~R~v 134 (545)
+... .....+.+|||.- ..+.+...-...|+|+--
T Consensus 132 ~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~ 170 (199)
T 1iak_A 132 VTDGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVE 170 (199)
T ss_dssp CCTTEEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEE
T ss_pred ccCceeecceEECCCCCEEEEEEEEEecCCCCEEEEEEE
Confidence 2211 1234677899953 455665412347999853
No 16
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=20.64 E-value=2.9e+02 Score=28.55 Aligned_cols=110 Identities=12% Similarity=-0.021 Sum_probs=62.3
Q ss_pred eeecccCCcccccccccccccccccccccccCcccceEEEEeeCCC-----CCCccceeEeccCcceEeE-Eec-Cccc-
Q 044684 397 IRLNLKTGESTRRVVVSGMNLEAGQVNRALLGQKTRYVYLAIADPW-----PKCSGIAKVDLGTGEVTKF-MYG-AHRF- 468 (545)
Q Consensus 397 ~~ldl~tg~~~~~~l~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~-----~~~~gi~K~Dl~tg~~~~~-~~g-~~~~- 468 (545)
..||+.|+++..+--. . ..| +- ..-...|+.|.+..... ..-+.|..+|+.++++... ..+ ++++
T Consensus 102 sVID~~t~~vv~~I~v-G---~~P--gi-a~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~ 174 (426)
T 3c75_H 102 FVIDGSTGRILGMTDG-G---FLP--HP-VAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL 174 (426)
T ss_dssp EEEETTTTEEEEEEEE-C---SSC--EE-EECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred EEEECCCCEEEEEEEC-C---CCC--ce-EECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccc
Confidence 4577788777643222 1 223 11 12235678888764211 0135699999999986554 233 2222
Q ss_pred -CCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceEEEEEecCC
Q 044684 469 -GGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPR 524 (545)
Q Consensus 469 -~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~LP~ 524 (545)
+..|--+ .-..|..+|.+.-. ...+.+.|+|.++.+..+++.+|.
T Consensus 175 ~g~~P~~~--------~~spDGk~lyV~n~---~~~~~VsVID~~t~kvv~~I~v~g 220 (426)
T 3c75_H 175 VGTYQWMN--------ALTPDNKNLLFYQF---SPAPAVGVVDLEGKTFDRMLDVPD 220 (426)
T ss_dssp BSCCGGGS--------EECTTSSEEEEEEC---SSSCEEEEEETTTTEEEEEEECCS
T ss_pred cCCCcceE--------EEcCCCCEEEEEec---CCCCeEEEEECCCCeEEEEEEcCC
Confidence 1122211 12235557665532 124679999999999999999874
Done!