Query 044684
Match_columns 545
No_of_seqs 229 out of 1061
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 09:42:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044684.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044684hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1m7ja2 b.92.1.6 (A:420-480) N 39.4 5.2 0.00038 28.4 1.4 36 503-538 7-42 (61)
2 d1zaka2 g.41.2.1 (A:128-158) M 37.7 3.7 0.00027 25.4 0.3 16 239-254 3-18 (31)
3 d1qksa2 b.70.2.1 (A:136-567) C 34.0 19 0.0014 34.6 5.1 35 489-523 378-413 (432)
4 d1l0qa2 b.69.2.3 (A:1-301) Sur 27.7 1.5E+02 0.011 24.5 10.0 86 431-536 211-296 (301)
5 d1hzua2 b.70.2.1 (A:118-543) C 23.6 33 0.0024 32.1 4.8 33 491-523 375-407 (426)
6 d1l0qa2 b.69.2.3 (A:1-301) Sur 21.3 1.8E+02 0.013 24.0 9.1 73 432-524 2-74 (301)
7 d1qfma1 b.69.7.1 (A:1-430) Pro 20.6 1.3E+02 0.0095 28.1 8.7 63 446-516 208-271 (430)
8 d1pbyb_ b.69.2.2 (B:) Quinohem 17.1 2.5E+02 0.018 23.3 9.2 72 432-523 2-75 (337)
9 d1pbyb_ b.69.2.2 (B:) Quinohem 15.8 1.6E+02 0.012 24.7 7.4 63 446-525 260-322 (337)
10 d1jmxb_ b.69.2.2 (B:) Quinohem 14.4 1.8E+02 0.013 24.4 7.5 62 446-524 272-333 (346)
No 1
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=39.41 E-value=5.2 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.415 Sum_probs=32.0
Q ss_pred cceeEEEecccceEEEEEecCCccccccceeecCch
Q 044684 503 ESEMVIVKASSMEQVASVKLPRRVPYGFHGTFISEQ 538 (545)
Q Consensus 503 ~S~L~VlDA~~~~~~A~v~LP~rvP~GFHG~fv~~~ 538 (545)
..+|+|||..++...|..+-|...+-|++..|++..
T Consensus 7 ~ADlvvfDp~~i~d~~~~~~~~~~~~Gi~~v~VnG~ 42 (61)
T d1m7ja2 7 YADLVVFDPATVADSATFEHPTERAAGIHSVYVNGA 42 (61)
T ss_dssp BCCEEEECTTTCBCCCCSSSTTCCCBSEEEEEETTE
T ss_pred CCCEEEECHHHccCcccccccccccceeEEEEECCE
Confidence 358999999999888999999999999999999864
No 2
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=37.72 E-value=3.7 Score=25.42 Aligned_cols=16 Identities=38% Similarity=0.717 Sum_probs=13.6
Q ss_pred CCCCCCCceeeEeecc
Q 044684 239 KVDPVTSDLHALSYNV 254 (545)
Q Consensus 239 k~Dp~tGel~~~~~~~ 254 (545)
++||.|||+|-+-|+.
T Consensus 3 R~DP~TG~iYH~~f~p 18 (31)
T d1zaka2 3 RLDPVTGKIYHLKYSP 18 (31)
T ss_dssp EECTTTCCEEESSSSC
T ss_pred cCCCCCCcEeEEecCC
Confidence 4699999999888875
No 3
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}
Probab=34.04 E-value=19 Score=34.55 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=29.1
Q ss_pred Cc-eEEEEEeccccccceeEEEecccceEEEEEecC
Q 044684 489 EG-FIMGFVRDERREESEMVIVKASSMEQVASVKLP 523 (545)
Q Consensus 489 DG-~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~LP 523 (545)
|| +|++.++...+..+.++|+|++++++.++++-|
T Consensus 378 DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 378 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 44 777777777777889999999999999888775
No 4
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=27.68 E-value=1.5e+02 Score=24.46 Aligned_cols=86 Identities=17% Similarity=0.280 Sum_probs=50.1
Q ss_pred cceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEe
Q 044684 431 TRYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVK 510 (545)
Q Consensus 431 ~Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlD 510 (545)
.++.|.+..+. ..+.|..+|+.+++...- +.. +++|.-|.=. .|..+|++... ....+.|+|
T Consensus 211 g~~~~v~~~~~--~~~~v~v~D~~t~~~~~~-~~~---~~~~~~va~s--------pdg~~l~va~~----~~~~i~v~D 272 (301)
T d1l0qa2 211 GTKAYVTNVDK--YFNTVSMIDTGTNKITAR-IPV---GPDPAGIAVT--------PDGKKVYVALS----FCNTVSVID 272 (301)
T ss_dssp SSEEEEEEECS--SCCEEEEEETTTTEEEEE-EEC---CSSEEEEEEC--------TTSSEEEEEET----TTTEEEEEE
T ss_pred ccccccccccc--eeeeeeeeecCCCeEEEE-EcC---CCCEEEEEEe--------CCCCEEEEEEC----CCCeEEEEE
Confidence 45555554432 135678889999876432 222 2344333322 24446654332 234799999
Q ss_pred cccceEEEEEecCCccccccceeecC
Q 044684 511 ASSMEQVASVKLPRRVPYGFHGTFIS 536 (545)
Q Consensus 511 A~~~~~~A~v~LP~rvP~GFHG~fv~ 536 (545)
.++.+..+++.+-. -|++. |.|+.
T Consensus 273 ~~t~~~~~~~~vg~-~P~~~-g~f~~ 296 (301)
T d1l0qa2 273 TATNTITATMAVGK-NPYAS-GQFIG 296 (301)
T ss_dssp TTTTEEEEEEECSS-SEECC-SSCEE
T ss_pred CCCCeEEEEEeCCC-CCcEe-EEEcc
Confidence 99999888887643 47776 55554
No 5
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.57 E-value=33 Score=32.05 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=27.3
Q ss_pred eEEEEEeccccccceeEEEecccceEEEEEecC
Q 044684 491 FIMGFVRDERREESEMVIVKASSMEQVASVKLP 523 (545)
Q Consensus 491 ~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~LP 523 (545)
+|++.++..+...+.+.|+|++++++.++++-+
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence 777777776677888999999999998888665
No 6
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}
Probab=21.33 E-value=1.8e+02 Score=24.01 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=43.8
Q ss_pred ceEEEEeeCCCCCCccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEec
Q 044684 432 RYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKA 511 (545)
Q Consensus 432 Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA 511 (545)
-|+|.+... -+.|..+|++++++..- +. .+..|.=|. -..|..+|++.- .....+.|+|.
T Consensus 2 ~~~yV~~~~----~~~v~v~D~~t~~~~~~-i~---~g~~p~~va--------~spdG~~l~v~~----~~~~~i~v~d~ 61 (301)
T d1l0qa2 2 TFAYIANSE----SDNISVIDVTSNKVTAT-IP---VGSNPMGAV--------ISPDGTKVYVAN----AHSNDVSIIDT 61 (301)
T ss_dssp EEEEEEETT----TTEEEEEETTTTEEEEE-EE---CSSSEEEEE--------ECTTSSEEEEEE----GGGTEEEEEET
T ss_pred eEEEEEECC----CCEEEEEECCCCeEEEE-EE---CCCCceEEE--------EeCCCCEEEEEE----CCCCEEEEEEC
Confidence 488876543 24688899999986542 22 123343222 123555765332 22347999999
Q ss_pred ccceEEEEEecCC
Q 044684 512 SSMEQVASVKLPR 524 (545)
Q Consensus 512 ~~~~~~A~v~LP~ 524 (545)
++.+..+++....
T Consensus 62 ~t~~~~~~~~~~~ 74 (301)
T d1l0qa2 62 ATNNVIATVPAGS 74 (301)
T ss_dssp TTTEEEEEEECSS
T ss_pred CCCceeeeeeccc
Confidence 9988877776643
No 7
>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Probab=20.59 E-value=1.3e+02 Score=28.07 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=36.8
Q ss_pred ccceeEeccCcce-EeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceE
Q 044684 446 SGIAKVDLGTGEV-TKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQ 516 (545)
Q Consensus 446 ~gi~K~Dl~tg~~-~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~ 516 (545)
..+.++.+.++.. ....|++ ..++.|+... ....|.-||+..+....+..++++++|+.+...
T Consensus 208 ~~v~~h~lgt~~~~d~~v~~e---~d~~~~~~~~-----~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~ 271 (430)
T d1qfma1 208 QKLYYHVLGTDQSEDILCAEF---PDEPKWMGGA-----ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESN 271 (430)
T ss_dssp CEEEEEETTSCGGGCEEEECC---TTCTTCEEEE-----EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred ceEEEEECCCCcccccccccc---ccCCceEEee-----eccCCcceeeEEeeccCCccEEEEEeeCCCccc
Confidence 4466666665421 1222332 1244454432 123566798888887777788999999876543
No 8
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=17.13 E-value=2.5e+02 Score=23.33 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=40.8
Q ss_pred ceEEEEeeCCCCCCccceeEeccCcceEeEEec--CcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEE
Q 044684 432 RYVYLAIADPWPKCSGIAKVDLGTGEVTKFMYG--AHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIV 509 (545)
Q Consensus 432 Ry~Y~~~~~~~~~~~gi~K~Dl~tg~~~~~~~g--~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~Vl 509 (545)
+|.+.+..+ +.|.-+|+++++...-... .+..+....|-| |.-+|++. ......|.|+
T Consensus 2 ~~~vt~~~d-----~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~sp-----------Dg~~l~v~----~~~~~~v~v~ 61 (337)
T d1pbyb_ 2 DYILAPARP-----DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-----------GGRIAYAT----VNKSESLVKI 61 (337)
T ss_dssp EEEEEEETT-----TEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-----------TSSEEEEE----ETTTTEEEEE
T ss_pred eEEEEEcCC-----CEEEEEECCCCeEEEEEECCCCCCCccEEEECC-----------CCCEEEEE----ECCCCeEEEE
Confidence 355554432 5788899999986542111 122222222222 33355442 1233579999
Q ss_pred ecccceEEEEEecC
Q 044684 510 KASSMEQVASVKLP 523 (545)
Q Consensus 510 DA~~~~~~A~v~LP 523 (545)
|..+.+...++.++
T Consensus 62 D~~t~~~~~~~~~~ 75 (337)
T d1pbyb_ 62 DLVTGETLGRIDLS 75 (337)
T ss_dssp ETTTCCEEEEEECC
T ss_pred ECCCCcEEEEEecC
Confidence 99998888887776
No 9
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}
Probab=15.79 E-value=1.6e+02 Score=24.71 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=38.5
Q ss_pred ccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceEEEEEecCCc
Q 044684 446 SGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPRR 525 (545)
Q Consensus 446 ~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~LP~r 525 (545)
+.|..+|+.+++.... ... ++.|.-+.=. .|.-+|.+.- ..+.+.|+|+++++..+++++|..
T Consensus 260 ~~i~v~d~~~~~~~~~-~~~---~~~~~~~~~s--------~dG~~l~v~~-----~~~~i~v~D~~t~~~v~~i~~~g~ 322 (337)
T d1pbyb_ 260 NVLESFDLEKNASIKR-VPL---PHSYYSVNVS--------TDGSTVWLGG-----ALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp SEEEEEETTTTEEEEE-EEC---SSCCCEEEEC--------TTSCEEEEES-----BSSEEEEEETTTCCEEEEEECGGG
T ss_pred ccEEEEECCCCcEEEE-EcC---CCCEEEEEEC--------CCCCEEEEEe-----CCCcEEEEECCCCcEEEEEECCCC
Confidence 4577789998875543 221 2233333322 2334554321 235699999999999999999743
No 10
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}
Probab=14.35 E-value=1.8e+02 Score=24.38 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=37.4
Q ss_pred ccceeEeccCcceEeEEecCcccCCcceeecCCCCCCCCCCCCCceEEEEEeccccccceeEEEecccceEEEEEecCC
Q 044684 446 SGIAKVDLGTGEVTKFMYGAHRFGGEPMFVPQNSKNVGSGREDEGFIMGFVRDERREESEMVIVKASSMEQVASVKLPR 524 (545)
Q Consensus 446 ~gi~K~Dl~tg~~~~~~~g~~~~~~EPvFVPr~~~~~~~~~EDDG~ll~~V~d~~~~~S~L~VlDA~~~~~~A~v~LP~ 524 (545)
+.|..+|+.+++.... ...+..+.--.| ..|.-+|.+.-.| +.+.|+|+++++..+++++|.
T Consensus 272 ~~v~v~d~~~~~~~~~-~~~~~~~~~va~-----------s~DG~~l~v~~~d-----~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 272 NRLAKYDLKQRKLIKA-ANLDHTYYCVAF-----------DKKGDKLYLGGTF-----NDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp SEEEEEETTTTEEEEE-EECSSCCCEEEE-----------CSSSSCEEEESBS-----SEEEEEETTTTEEEEEEECSS
T ss_pred CeEEEEECCCCcEEEE-EcCCCCEEEEEE-----------cCCCCEEEEEeCC-----CcEEEEECccCCEEEEEECCC
Confidence 4577788888875432 222221111112 1244455543222 479999999999999999984
Done!