Query 044685
Match_columns 82
No_of_seqs 108 out of 193
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:45:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.4 2.1E-13 4.5E-18 107.2 3.7 64 8-72 49-116 (331)
2 PF13450 NAD_binding_8: NAD(P) 74.6 2 4.3E-05 25.9 1.4 25 6-30 42-68 (68)
3 PF15320 RAM: mRNA cap methyla 61.7 3 6.6E-05 27.2 0.3 28 15-42 10-38 (81)
4 PF04412 DUF521: Protein of un 54.5 16 0.00034 29.8 3.3 56 25-80 102-175 (400)
5 COG1759 5-formaminoimidazole-4 47.3 17 0.00036 29.8 2.4 26 12-37 163-189 (361)
6 PF05678 VQ: VQ motif; InterP 44.8 16 0.00035 19.9 1.4 22 12-33 4-25 (31)
7 CHL00108 psbJ photosystem II p 43.6 9.1 0.0002 22.4 0.3 8 71-78 5-12 (40)
8 PF01788 PsbJ: PsbJ; InterPro 37.2 12 0.00026 21.9 0.1 9 70-78 4-12 (40)
9 PRK02565 photosystem II reacti 35.9 14 0.00031 21.4 0.3 8 71-78 4-11 (39)
10 cd01355 AcnX Putative Aconitas 35.5 48 0.001 27.1 3.4 55 26-80 96-168 (389)
11 COG1679 Predicted aconitase [G 33.9 35 0.00077 28.4 2.4 31 50-80 149-179 (403)
12 COG5504 Predicted Zn-dependent 30.4 38 0.00082 26.9 1.9 36 26-61 179-228 (280)
13 PF06258 Mito_fiss_Elm1: Mitoc 28.8 52 0.0011 25.5 2.5 24 19-42 260-283 (311)
14 PF09106 SelB-wing_2: Elongati 27.9 55 0.0012 19.0 1.9 21 18-38 32-52 (59)
15 TIGR03467 HpnE squalene-associ 25.4 63 0.0014 23.9 2.3 24 7-30 36-59 (419)
16 PF04304 DUF454: Protein of un 23.8 63 0.0014 19.2 1.7 19 19-37 7-25 (71)
17 PLN02839 nudix hydrolase 23.2 50 0.0011 27.1 1.5 30 17-46 150-179 (372)
18 PF01593 Amino_oxidase: Flavin 20.6 77 0.0017 22.6 1.9 27 6-32 39-65 (450)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.39 E-value=2.1e-13 Score=107.20 Aligned_cols=64 Identities=20% Similarity=0.148 Sum_probs=56.2
Q ss_pred ccccCCceeEecCcchHHHHHHHHHCCcccCCCCcccccCCCC----CCcCcccccCCcccccchhhcc
Q 044685 8 IFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLS----HSLSPLMCELPQMHLQNRRLIG 72 (82)
Q Consensus 8 ~fDHGAQYFTar~p~F~~~V~~w~~~G~v~~W~~~~~~~~~~~----~s~~p~~~~~p~m~~~~r~l~~ 72 (82)
.||||||||++|++.|.++|+.|.++|+|.+|++.++.+.+.. ..-.| |++.|+|+++.|.|+-
T Consensus 49 ~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~~~~~~~~~~~~~~~d~~p-yvg~pgmsalak~LAt 116 (331)
T COG3380 49 RFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTPAVWTFTGDGSPPRGDEDP-YVGEPGMSALAKFLAT 116 (331)
T ss_pred cccccceeecCCchHHHHHHHHHHhCCceeeccccccccccCCCCCCCCCCc-cccCcchHHHHHHHhc
Confidence 4999999999999999999999999999999999998887553 22336 8999999999998874
No 2
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=74.60 E-value=2 Score=25.90 Aligned_cols=25 Identities=8% Similarity=0.049 Sum_probs=19.1
Q ss_pred ccccccCCceeEe--cCcchHHHHHHH
Q 044685 6 PLIFGHAAQFITV--NDYRFHPSVNGW 30 (82)
Q Consensus 6 ~~~fDHGAQYFTa--r~p~F~~~V~~w 30 (82)
+..+|+|+.+|.. .++.+.++++++
T Consensus 42 g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 42 GYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp TEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 3789999999998 468888887763
No 3
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=61.67 E-value=3 Score=27.24 Aligned_cols=28 Identities=7% Similarity=-0.130 Sum_probs=23.1
Q ss_pred eeEecCcchHHHHH-HHHHCCcccCCCCc
Q 044685 15 FITVNDYRFHPSVN-GWLERGLHCHPCFS 42 (82)
Q Consensus 15 YFTar~p~F~~~V~-~w~~~G~v~~W~~~ 42 (82)
=||..|++|++.++ ....-=||.+|..+
T Consensus 10 RfTe~D~ey~~~~~~~~~~PPIV~~W~~r 38 (81)
T PF15320_consen 10 RFTEDDEEYMEYCKRPFPPPPIVEPWNSR 38 (81)
T ss_pred hccccCHHHHHHHhCCCCCCCEecCcccC
Confidence 38999999999997 56677789999753
No 4
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=54.53 E-value=16 Score=29.83 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=37.6
Q ss_pred HHHHHHHHCCcccCCCCcccccC---CC---------------CCCcCcccccCCcccccchhhccCCcccccc
Q 044685 25 PSVNGWLERGLHCHPCFSLSLHL---SL---------------SHSLSPLMCELPQMHLQNRRLIGRTPLWGMM 80 (82)
Q Consensus 25 ~~V~~w~~~G~v~~W~~~~~~~~---~~---------------~~s~~p~~~~~p~m~~~~r~l~~~~~~~~~~ 80 (82)
++++...+-|+.-.|+-.-|... .. |..+.=.=-..++.++.--+|+||||.||+-
T Consensus 102 ~i~~a~~~mG~~~t~TCtPY~~~~~P~~Ge~iAW~ESsAV~yaNSVlGARTNreg~~~al~aAitGrtP~~G~h 175 (400)
T PF04412_consen 102 RIIDAYRKMGAQPTFTCTPYLLGNRPRFGEHIAWSESSAVIYANSVLGARTNREGGPSALAAAITGRTPYYGLH 175 (400)
T ss_pred HHHHHHHHcCCcccccCcCccCCCCCCCCCEEEEecccceeeeecccchhcCCCCcHHHHHHHHhCCCCccccc
Confidence 45666788898777775444432 11 3333333345688889999999999999984
No 5
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=47.26 E-value=17 Score=29.84 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCceeEecCcc-hHHHHHHHHHCCccc
Q 044685 12 AAQFITVNDYR-FHPSVNGWLERGLHC 37 (82)
Q Consensus 12 GAQYFTar~p~-F~~~V~~w~~~G~v~ 37 (82)
|--||+|++++ |...++.+++.|++.
T Consensus 163 gRGyFiA~s~eef~ek~e~l~~~gvi~ 189 (361)
T COG1759 163 GRGYFIASSPEEFYEKAERLLKRGVIT 189 (361)
T ss_pred CceEEEEcCHHHHHHHHHHHHHcCCcc
Confidence 55699998765 999999999999983
No 6
>PF05678 VQ: VQ motif; InterPro: IPR008889 This short motif is found in a variety of plant proteins. These proteins vary greatly in length and are mostly composed of low complexity regions. They all conserve a short motif FXhVQChTG, where X is any amino acid and h is a hydrophobic amino acid. The function of this motif is uncertain, however one protein in this family has been found to bind the SigA sigma factor Q9LDH1 from SWISSPROT. It would seem plausible that this motif is needed for this activity and that this whole family might be involved in modulating plastid sigma factors.
Probab=44.84 E-value=16 Score=19.89 Aligned_cols=22 Identities=14% Similarity=0.151 Sum_probs=18.1
Q ss_pred CCceeEecCcchHHHHHHHHHC
Q 044685 12 AAQFITVNDYRFHPSVNGWLER 33 (82)
Q Consensus 12 GAQYFTar~p~F~~~V~~w~~~ 33 (82)
-.+++.++-.+|+++|+++-..
T Consensus 4 ~p~vi~~d~~~Fr~lVQ~LTG~ 25 (31)
T PF05678_consen 4 PPTVIHTDPSNFRALVQRLTGA 25 (31)
T ss_pred CCEEEEeCHHHHHHHHHHhHCc
Confidence 3568889999999999998654
No 7
>CHL00108 psbJ photosystem II protein J
Probab=43.59 E-value=9.1 Score=22.39 Aligned_cols=8 Identities=63% Similarity=1.311 Sum_probs=6.7
Q ss_pred ccCCcccc
Q 044685 71 IGRTPLWG 78 (82)
Q Consensus 71 ~~~~~~~~ 78 (82)
+||.|||-
T Consensus 5 tGRiPLWl 12 (40)
T CHL00108 5 TGRIPLWL 12 (40)
T ss_pred cccccEEe
Confidence 59999994
No 8
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=37.15 E-value=12 Score=21.91 Aligned_cols=9 Identities=56% Similarity=1.117 Sum_probs=5.8
Q ss_pred hccCCcccc
Q 044685 70 LIGRTPLWG 78 (82)
Q Consensus 70 l~~~~~~~~ 78 (82)
-+||.|||-
T Consensus 4 ttGRIPLWl 12 (40)
T PF01788_consen 4 TTGRIPLWL 12 (40)
T ss_dssp -TTSS-HHH
T ss_pred CCCcccchH
Confidence 479999993
No 9
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=35.87 E-value=14 Score=21.44 Aligned_cols=8 Identities=63% Similarity=1.223 Sum_probs=6.7
Q ss_pred ccCCcccc
Q 044685 71 IGRTPLWG 78 (82)
Q Consensus 71 ~~~~~~~~ 78 (82)
.||.|||-
T Consensus 4 ~GriPLWl 11 (39)
T PRK02565 4 EGRIPLWL 11 (39)
T ss_pred CCccceee
Confidence 49999994
No 10
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=35.49 E-value=48 Score=27.09 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=39.7
Q ss_pred HHHHHHHCCcccCCCCccccc---CCC---------------CCCcCcccccCCcccccchhhccCCcccccc
Q 044685 26 SVNGWLERGLHCHPCFSLSLH---LSL---------------SHSLSPLMCELPQMHLQNRRLIGRTPLWGMM 80 (82)
Q Consensus 26 ~V~~w~~~G~v~~W~~~~~~~---~~~---------------~~s~~p~~~~~p~m~~~~r~l~~~~~~~~~~ 80 (82)
+++...+-|+--.|+-.-|.+ |+. |..+.=.=-.-|+.+++-=+|+||+|.+|.-
T Consensus 96 i~~ay~~mG~~~t~TCtPY~~~~~P~~Ge~iAWaESnAV~yANSVlGARTnregg~~aLaaAitGr~P~~Glh 168 (389)
T cd01355 96 LVKAYKAMGVDPTFTCTPYQLENLPKKGEHIAWAESSAVVYANSVLGARTNREGGPSALAAAITGRTPEYGVH 168 (389)
T ss_pred HHHHHHHcCCcccccccCccCCCCCCCCCeeeEecccceeeeeccccccccCCCCHHHHHHHHhCCCCccccc
Confidence 456678889988888766633 333 3344444456789999999999999999964
No 11
>COG1679 Predicted aconitase [General function prediction only]
Probab=33.87 E-value=35 Score=28.36 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCCcCcccccCCcccccchhhccCCcccccc
Q 044685 50 SHSLSPLMCELPQMHLQNRRLIGRTPLWGMM 80 (82)
Q Consensus 50 ~~s~~p~~~~~p~m~~~~r~l~~~~~~~~~~ 80 (82)
|..+.-+=-.-++-.++--+|+||||+||+-
T Consensus 149 NSVlGArTnReggp~aL~aAi~Gr~P~yG~h 179 (403)
T COG1679 149 NSVLGARTNREGGPLALAAAITGRTPLYGLH 179 (403)
T ss_pred hhhhhhhccccCCHHHHHHHHhCCCcccccc
Confidence 4444555566788889999999999999973
No 12
>COG5504 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=30.44 E-value=38 Score=26.95 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=24.5
Q ss_pred HHHHHHHCCcccCCCCcc-------------cccCCCCC-CcCcccccCC
Q 044685 26 SVNGWLERGLHCHPCFSL-------------SLHLSLSH-SLSPLMCELP 61 (82)
Q Consensus 26 ~V~~w~~~G~v~~W~~~~-------------~~~~~~~~-s~~p~~~~~p 61 (82)
.|.+.-.++-+.+|..+. ..+....+ ..+|||-|.|
T Consensus 179 av~E~~Gr~~l~~Wvt~yd~~dLq~l~~~~ie~~~~~~~de~~pylfG~p 228 (280)
T COG5504 179 AVFELFGRGELGPWVTRYDTEDLQALIERTIEPHLSKKHDEHAPYLFGDP 228 (280)
T ss_pred HHHHHhCccccCCcccCCCHHHHHHHHHHhhhhhhhcchhhhchhhhCCC
Confidence 455666667778898763 34444444 4899999998
No 13
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=28.77 E-value=52 Score=25.48 Aligned_cols=24 Identities=21% Similarity=-0.045 Sum_probs=21.6
Q ss_pred cCcchHHHHHHHHHCCcccCCCCc
Q 044685 19 NDYRFHPSVNGWLERGLHCHPCFS 42 (82)
Q Consensus 19 r~p~F~~~V~~w~~~G~v~~W~~~ 42 (82)
+..+|+++++.+.+.|+++++.+.
T Consensus 260 ~~~r~~r~~~~L~~~g~~r~~~~~ 283 (311)
T PF06258_consen 260 RSGRFRRFHQSLEERGAVRPFTGW 283 (311)
T ss_pred cchHHHHHHHHHHHCCCEEECCCc
Confidence 455799999999999999999987
No 14
>PF09106 SelB-wing_2: Elongation factor SelB, winged helix ; InterPro: IPR015190 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 2". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2V9V_A 1LVA_A 2PLY_A 2UWM_A.
Probab=27.86 E-value=55 Score=19.03 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=17.0
Q ss_pred ecCcchHHHHHHHHHCCcccC
Q 044685 18 VNDYRFHPSVNGWLERGLHCH 38 (82)
Q Consensus 18 ar~p~F~~~V~~w~~~G~v~~ 38 (82)
...+.|..+++.++++|.+..
T Consensus 32 l~~k~~~~ll~~l~~~g~l~~ 52 (59)
T PF09106_consen 32 LPPKLFNALLEALVAEGRLKV 52 (59)
T ss_dssp S-HCCHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHCCCeee
Confidence 346789999999999998853
No 15
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=25.45 E-value=63 Score=23.94 Aligned_cols=24 Identities=0% Similarity=-0.097 Sum_probs=20.5
Q ss_pred cccccCCceeEecCcchHHHHHHH
Q 044685 7 LIFGHAAQFITVNDYRFHPSVNGW 30 (82)
Q Consensus 7 ~~fDHGAQYFTar~p~F~~~V~~w 30 (82)
..||.|+++|-..++.+.++++++
T Consensus 36 ~~~d~G~~~~~~~~~~~~~l~~~l 59 (419)
T TIGR03467 36 QTIDNGQHVLLGAYTNLLALLRRI 59 (419)
T ss_pred cceecCCEEEEcccHHHHHHHHHh
Confidence 349999999998888888888875
No 16
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=23.85 E-value=63 Score=19.25 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.3
Q ss_pred cCcchHHHHHHHHHCCccc
Q 044685 19 NDYRFHPSVNGWLERGLHC 37 (82)
Q Consensus 19 r~p~F~~~V~~w~~~G~v~ 37 (82)
+++-|++.+++|.+.+.+.
T Consensus 7 ~h~~~g~~I~~w~~~r~i~ 25 (71)
T PF04304_consen 7 NHRLFGPYIRNWEEHRGIP 25 (71)
T ss_pred cCchhHHHHHHHHHCCCcC
Confidence 6788999999999987764
No 17
>PLN02839 nudix hydrolase
Probab=23.24 E-value=50 Score=27.09 Aligned_cols=30 Identities=7% Similarity=-0.164 Sum_probs=25.8
Q ss_pred EecCcchHHHHHHHHHCCcccCCCCccccc
Q 044685 17 TVNDYRFHPSVNGWLERGLHCHPCFSLSLH 46 (82)
Q Consensus 17 Tar~p~F~~~V~~w~~~G~v~~W~~~~~~~ 46 (82)
..|+..++++++.|.++|++..|.+..+.-
T Consensus 150 ~~Rt~al~~v~~~lr~~g~~~gWRnE~y~V 179 (372)
T PLN02839 150 EDRTRAVADVIKILGDKGIIPGIRNELYPV 179 (372)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccCcccc
Confidence 457888999999999999999998876655
No 18
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=20.59 E-value=77 Score=22.60 Aligned_cols=27 Identities=7% Similarity=-0.165 Sum_probs=21.6
Q ss_pred ccccccCCceeEecCcchHHHHHHHHH
Q 044685 6 PLIFGHAAQFITVNDYRFHPSVNGWLE 32 (82)
Q Consensus 6 ~~~fDHGAQYFTar~p~F~~~V~~w~~ 32 (82)
+..||.|+.+|....+.+...+.++..
T Consensus 39 g~~~e~G~~~~~~~~~~~~~~~~~l~~ 65 (450)
T PF01593_consen 39 GFTFELGAHRFFGMYPNLLNLIDELGL 65 (450)
T ss_dssp TEEEESSS-EEETTSHHHHHHHHHHTH
T ss_pred ceeecCCcccccccchhhHHHHHHhhh
Confidence 678999999999888878888888643
Done!