Query 044685
Match_columns 82
No_of_seqs 108 out of 193
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj4_A Renalase; FAD/NAD(P)-bi 97.3 0.00024 8.4E-09 50.6 4.7 65 6-72 53-120 (342)
2 1yvv_A Amine oxidase, flavin-c 94.7 0.013 4.6E-07 40.7 2.0 66 7-72 49-118 (336)
3 3kkj_A Amine oxidase, flavin-c 94.1 0.023 7.7E-07 35.1 1.9 41 6-46 48-88 (336)
4 3dup_A MUTT/nudix family prote 48.2 7.7 0.00026 28.9 1.7 31 17-47 65-95 (300)
5 3arc_J Photosystem II reaction 33.9 9.5 0.00032 21.5 0.2 8 71-78 5-12 (40)
6 2ivd_A PPO, PPOX, protoporphyr 30.5 18 0.00062 26.3 1.2 25 6-30 62-86 (478)
7 2llw_A Heat shock protein STI1 26.9 29 0.00099 20.9 1.5 19 19-37 50-68 (71)
8 4gde_A UDP-galactopyranose mut 21.6 32 0.0011 25.0 1.2 27 5-31 57-83 (513)
9 3vc3_A Beta-cyanoalnine syntha 18.6 46 0.0016 24.4 1.5 17 61-77 23-39 (344)
10 1yna_A XYNA, endo-1,4-beta-xyl 16.9 1E+02 0.0035 22.2 2.9 24 13-36 135-165 (194)
No 1
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=97.33 E-value=0.00024 Score=50.61 Aligned_cols=65 Identities=9% Similarity=-0.018 Sum_probs=51.7
Q ss_pred ccccccCCceeEecCc---chHHHHHHHHHCCcccCCCCcccccCCCCCCcCcccccCCcccccchhhcc
Q 044685 6 PLIFGHAAQFITVNDY---RFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQNRRLIG 72 (82)
Q Consensus 6 ~~~fDHGAQYFTar~p---~F~~~V~~w~~~G~v~~W~~~~~~~~~~~~s~~p~~~~~p~m~~~~r~l~~ 72 (82)
...+|||++||+++++ +|.++++.|.+.|++.+|......... ....++++..++|....++|+.
T Consensus 53 ~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~l~~~l~~ 120 (342)
T 3qj4_A 53 QCTADLGAQYITCTPHYAKKHQRFYDELLAYGVLRPLSSPIEGMVM--KEGDCNFVAPQGISSIIKHYLK 120 (342)
T ss_dssp TCEEESSCCCEEECSSHHHHTHHHHHHHHHTTSCEECCSCEETCCC----CCEEEECTTCTTHHHHHHHH
T ss_pred CceEecCCceEEcCchHHHHHHHHHHHHHhCCCeecCchhhcceec--cCCccceecCCCHHHHHHHHHH
Confidence 4579999999999988 899999999999999999876543322 1234678888999998888864
No 2
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=94.71 E-value=0.013 Score=40.71 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=50.5
Q ss_pred cccccCCceeEecCcchHHHHHHHHHCCcccCCCCcccccCCCC----CCcCcccccCCcccccchhhcc
Q 044685 7 LIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLS----HSLSPLMCELPQMHLQNRRLIG 72 (82)
Q Consensus 7 ~~fDHGAQYFTar~p~F~~~V~~w~~~G~v~~W~~~~~~~~~~~----~s~~p~~~~~p~m~~~~r~l~~ 72 (82)
..+|+|+++|+.++++|.++++.|...+.+..|...+....... ....+.++..++|....++|+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 118 (336)
T 1yvv_A 49 GALDMGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRG 118 (336)
T ss_dssp EEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEECCCEEEESSSBCCCCCTTSCEEEESSCTHHHHHHHHT
T ss_pred CeEecCCCeEecCCHHHHHHHHHHHhCCCeeeccccceeccCcccccCCCCCccEEcCccHHHHHHHHHc
Confidence 45899999999999999999999999999999987664443221 1223566777788887777754
No 3
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=94.14 E-value=0.023 Score=35.11 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=35.0
Q ss_pred ccccccCCceeEecCcchHHHHHHHHHCCcccCCCCccccc
Q 044685 6 PLIFGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLH 46 (82)
Q Consensus 6 ~~~fDHGAQYFTar~p~F~~~V~~w~~~G~v~~W~~~~~~~ 46 (82)
...+|+|+|||++++++|...+..+...+....+...+...
T Consensus 48 ~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (336)
T 3kkj_A 48 AGALDMGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNF 88 (336)
T ss_dssp TEEEECSCCCBCCCSHHHHHHHHHHHHHTSEEEECCCEEEE
T ss_pred CceeecCccccccCcHHHHHHHHHHHhcccccccccccccc
Confidence 34689999999999999999999999999988887665443
No 4
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Probab=48.18 E-value=7.7 Score=28.94 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=26.1
Q ss_pred EecCcchHHHHHHHHHCCcccCCCCcccccC
Q 044685 17 TVNDYRFHPSVNGWLERGLHCHPCFSLSLHL 47 (82)
Q Consensus 17 Tar~p~F~~~V~~w~~~G~v~~W~~~~~~~~ 47 (82)
..|+..++++++.|.++|++..|.+.+++--
T Consensus 65 ~~rt~~~~~~~~~~~~~g~~~gwr~E~~~V~ 95 (300)
T 3dup_A 65 QSRTRAVADVVDRLADEGVVPAPRGELYRVN 95 (300)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCCCSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccccEEee
Confidence 4567889999999999999999998776553
No 5
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=33.93 E-value=9.5 Score=21.48 Aligned_cols=8 Identities=63% Similarity=1.145 Sum_probs=6.5
Q ss_pred ccCCcccc
Q 044685 71 IGRTPLWG 78 (82)
Q Consensus 71 ~~~~~~~~ 78 (82)
.||.|||-
T Consensus 5 tGRiPLWl 12 (40)
T 3arc_J 5 GGRIPLWI 12 (40)
T ss_dssp TTSSCHHH
T ss_pred cCcccEEe
Confidence 48999993
No 6
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=30.48 E-value=18 Score=26.32 Aligned_cols=25 Identities=0% Similarity=-0.094 Sum_probs=20.6
Q ss_pred ccccccCCceeEecCcchHHHHHHH
Q 044685 6 PLIFGHAAQFITVNDYRFHPSVNGW 30 (82)
Q Consensus 6 ~~~fDHGAQYFTar~p~F~~~V~~w 30 (82)
+..||+|+++|....+.+.++++++
T Consensus 62 g~~~~~g~~~~~~~~~~~~~~~~~~ 86 (478)
T 2ivd_A 62 GYLVEQGPNSFLDREPATRALAAAL 86 (478)
T ss_dssp TEEEESSCCCEETTCHHHHHHHHHT
T ss_pred CeeeecChhhhhhhhHHHHHHHHHc
Confidence 4679999999998788888887765
No 7
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=26.90 E-value=29 Score=20.88 Aligned_cols=19 Identities=5% Similarity=0.160 Sum_probs=17.1
Q ss_pred cCcchHHHHHHHHHCCccc
Q 044685 19 NDYRFHPSVNGWLERGLHC 37 (82)
Q Consensus 19 r~p~F~~~V~~w~~~G~v~ 37 (82)
++|++...++.+.++|+++
T Consensus 50 ~nP~v~~~i~kl~~aGii~ 68 (71)
T 2llw_A 50 KNPEVFKKIQTLIAAGIIR 68 (71)
T ss_dssp HSHHHHHHHHHHHHTTSSC
T ss_pred hCHHHHHHHHHHHHcchhh
Confidence 5899999999999999986
No 8
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=21.64 E-value=32 Score=25.03 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.4
Q ss_pred CccccccCCceeEecCcchHHHHHHHH
Q 044685 5 QPLIFGHAAQFITVNDYRFHPSVNGWL 31 (82)
Q Consensus 5 ~~~~fDHGAQYFTar~p~F~~~V~~w~ 31 (82)
.+..||.|+..|-.+++.+.+++++..
T Consensus 57 ~G~~~D~G~h~~~~~~~~v~~l~~e~~ 83 (513)
T 4gde_A 57 EGFLYDVGGHVIFSHYKYFDDCLDEAL 83 (513)
T ss_dssp TSCEEESSCCCCCCCBHHHHHHHHHHS
T ss_pred CCEEEEeCceEecCCCHHHHHHHHHhC
Confidence 457899999999888898888888763
No 9
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=18.57 E-value=46 Score=24.43 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=13.3
Q ss_pred CcccccchhhccCCccc
Q 044685 61 PQMHLQNRRLIGRTPLW 77 (82)
Q Consensus 61 p~m~~~~r~l~~~~~~~ 77 (82)
.+++--+..|+|+|||-
T Consensus 23 ~~i~~~i~~lIG~TPLv 39 (344)
T 3vc3_A 23 TNIKKHVSQLIGRTPLV 39 (344)
T ss_dssp CSCBSSGGGGSCCCCEE
T ss_pred hhhhccHhhhcCCCceE
Confidence 35666788899999984
No 10
>1yna_A XYNA, endo-1,4-beta-xylanase; hydrolase; 1.55A {Thermomyces lanuginosus} SCOP: b.29.1.11 PDB: 1pvx_A
Probab=16.89 E-value=1e+02 Score=22.16 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=19.4
Q ss_pred CceeEecCcc-------hHHHHHHHHHCCcc
Q 044685 13 AQFITVNDYR-------FHPSVNGWLERGLH 36 (82)
Q Consensus 13 AQYFTar~p~-------F~~~V~~w~~~G~v 36 (82)
-||+.||... |..-++.|.+.|+-
T Consensus 135 ~QywSVR~~kR~~GTIt~~~HF~aW~~~Gm~ 165 (194)
T 1yna_A 135 DQYWSVRQDKRTSGTVQTGCHFDAWARAGLN 165 (194)
T ss_dssp EEEEEEESSCCSSEEEEHHHHHHHHHHTTCC
T ss_pred EeeEEEecCCCCCcEEeHHHHHHHHHHcCCC
Confidence 3899997554 88999999999864
Done!