Query 044685
Match_columns 82
No_of_seqs 108 out of 193
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 09:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044685.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044685hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1seza1 c.3.1.2 (A:13-329,A:44 74.7 0.44 3.2E-05 28.6 0.9 25 6-30 47-71 (373)
2 d2ivda1 c.3.1.2 (A:10-306,A:41 56.3 2.4 0.00017 25.4 1.6 25 6-30 46-70 (347)
3 d1b5qa1 c.3.1.2 (A:5-293,A:406 53.4 2.5 0.00018 24.2 1.3 30 6-35 47-76 (347)
4 d2dw4a2 c.3.1.2 (A:274-654,A:7 47.7 5 0.00036 23.8 2.0 25 6-30 51-76 (449)
5 d2iida1 c.3.1.2 (A:4-319,A:433 41.4 5.3 0.00038 24.5 1.5 27 5-31 77-103 (370)
6 d1efub4 d.43.1.1 (B:55-139) El 40.8 2.8 0.00021 24.6 0.1 19 16-34 27-45 (85)
7 d1xb2b2 d.43.1.1 (B:112-222) E 33.7 4.2 0.00031 24.4 0.0 19 16-34 29-47 (111)
8 d2v5za1 c.3.1.2 (A:6-289,A:402 30.5 9.5 0.00069 23.5 1.4 25 6-30 46-70 (383)
9 d1r9ca_ d.32.1.2 (A:) Fosfomyc 21.5 41 0.003 18.4 3.0 49 14-67 70-118 (130)
10 d1qipa_ d.32.1.1 (A:) Glyoxala 21.3 74 0.0054 18.3 4.8 53 9-67 113-165 (176)
No 1
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=74.67 E-value=0.44 Score=28.62 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=21.3
Q ss_pred ccccccCCceeEecCcchHHHHHHH
Q 044685 6 PLIFGHAAQFITVNDYRFHPSVNGW 30 (82)
Q Consensus 6 ~~~fDHGAQYFTar~p~F~~~V~~w 30 (82)
+..+|+|+++|+...+.+.+++++.
T Consensus 47 g~~~d~G~~~~~~~~~~~~~~~~~~ 71 (373)
T d1seza1 47 GLIWDEGANTMTESEGDVTFLIDSL 71 (373)
T ss_dssp TEEEESSCCCBCCCSHHHHHHHHHT
T ss_pred CEEEecCceEEeCCCHHHHHHHHHh
Confidence 4679999999999999998888764
No 2
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}
Probab=56.28 E-value=2.4 Score=25.40 Aligned_cols=25 Identities=0% Similarity=-0.094 Sum_probs=21.0
Q ss_pred ccccccCCceeEecCcchHHHHHHH
Q 044685 6 PLIFGHAAQFITVNDYRFHPSVNGW 30 (82)
Q Consensus 6 ~~~fDHGAQYFTar~p~F~~~V~~w 30 (82)
+..+|+|+++|....+.+.+++++.
T Consensus 46 g~~~d~G~~~~~~~~~~~~~l~~~~ 70 (347)
T d2ivda1 46 GYLVEQGPNSFLDREPATRALAAAL 70 (347)
T ss_dssp TEEEESSCCCEETTCHHHHHHHHHT
T ss_pred CEEEecCceEEecCCHHHHHHHHHh
Confidence 3568999999999999988888764
No 3
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}
Probab=53.37 E-value=2.5 Score=24.20 Aligned_cols=30 Identities=7% Similarity=-0.063 Sum_probs=21.1
Q ss_pred ccccccCCceeEecCcchHHHHHHHHHCCc
Q 044685 6 PLIFGHAAQFITVNDYRFHPSVNGWLERGL 35 (82)
Q Consensus 6 ~~~fDHGAQYFTar~p~F~~~V~~w~~~G~ 35 (82)
+..+|+|+++|+..+......+.++.....
T Consensus 47 g~~~d~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (347)
T d1b5qa1 47 GINVELGANWVEGVNGGKMNPIWPIVNSTL 76 (347)
T ss_dssp TEEEESSCCEEEEESSSSCCTHHHHHHTTS
T ss_pred CEEEecCCeEEeccchhhhhHHHhhhcccc
Confidence 346899999999887766555555554443
No 4
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.67 E-value=5 Score=23.83 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=18.8
Q ss_pred ccccccCCceeE-ecCcchHHHHHHH
Q 044685 6 PLIFGHAAQFIT-VNDYRFHPSVNGW 30 (82)
Q Consensus 6 ~~~fDHGAQYFT-ar~p~F~~~V~~w 30 (82)
+..||+||++|. ...+.+.++++++
T Consensus 51 g~~~d~G~~~i~~~~~~~~~~l~~~l 76 (449)
T d2dw4a2 51 NYVADLGAMVVTGLGGNPMAVVSKQV 76 (449)
T ss_dssp TEEEESSCCEECCSBTCHHHHHHHHH
T ss_pred CEEEECCCEEECCCCCcHHHHHHHHc
Confidence 456999999997 4556677777765
No 5
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=41.38 E-value=5.3 Score=24.46 Aligned_cols=27 Identities=0% Similarity=-0.148 Sum_probs=22.7
Q ss_pred CccccccCCceeEecCcchHHHHHHHH
Q 044685 5 QPLIFGHAAQFITVNDYRFHPSVNGWL 31 (82)
Q Consensus 5 ~~~~fDHGAQYFTar~p~F~~~V~~w~ 31 (82)
....+|+|++++....+.+.++++++.
T Consensus 77 ~g~~~d~G~~~~~~~~~~~~~l~~~~~ 103 (370)
T d2iida1 77 AGWYANLGPMRLPEKHRIVREYIRKFD 103 (370)
T ss_dssp TTEEEESSCCCEETTCHHHHHHHHHTT
T ss_pred CCceeccCceeecCccHHHHHHHHHhC
Confidence 356799999999999999988888754
No 6
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]}
Probab=40.78 E-value=2.8 Score=24.59 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.8
Q ss_pred eEecCcchHHHHHHHHHCC
Q 044685 16 ITVNDYRFHPSVNGWLERG 34 (82)
Q Consensus 16 FTar~p~F~~~V~~w~~~G 34 (82)
|.||++.|+++++...+.-
T Consensus 27 FVAkne~F~~l~~~i~~~~ 45 (85)
T d1efub4 27 FVAKDAGFQAFADKVLDAA 45 (85)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred chhcchHHHHHHHHHHHHH
Confidence 6789999999999986543
No 7
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=33.69 E-value=4.2 Score=24.45 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=15.8
Q ss_pred eEecCcchHHHHHHHHHCC
Q 044685 16 ITVNDYRFHPSVNGWLERG 34 (82)
Q Consensus 16 FTar~p~F~~~V~~w~~~G 34 (82)
|.||++.|++++++....-
T Consensus 29 FVArn~~F~~la~~ia~~~ 47 (111)
T d1xb2b2 29 FVSRNLKFQQLVQQVALGT 47 (111)
T ss_dssp HHHTSHHHHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHH
Confidence 6789999999999986543
No 8
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.54 E-value=9.5 Score=23.52 Aligned_cols=25 Identities=4% Similarity=0.008 Sum_probs=19.4
Q ss_pred ccccccCCceeEecCcchHHHHHHH
Q 044685 6 PLIFGHAAQFITVNDYRFHPSVNGW 30 (82)
Q Consensus 6 ~~~fDHGAQYFTar~p~F~~~V~~w 30 (82)
...||+|+++|....+.+.++++++
T Consensus 46 g~~~d~G~~~~~~~~~~~~~l~~~l 70 (383)
T d2v5za1 46 VKYVDLGGSYVGPTQNRILRLAKEL 70 (383)
T ss_dssp TSCEESSCCEECTTCHHHHHHHHHT
T ss_pred CcEEeCCceEeCCCChHHHHHHHHc
Confidence 3458999999988888777777653
No 9
>d1r9ca_ d.32.1.2 (A:) Fosfomycin resistance protein FosX {Mesorhizobium loti [TaxId: 381]}
Probab=21.51 E-value=41 Score=18.38 Aligned_cols=49 Identities=12% Similarity=0.026 Sum_probs=29.7
Q ss_pred ceeEecCcchHHHHHHHHHCCcccCCCCcccccCCCCCCcCcccccCCcccccc
Q 044685 14 QFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQN 67 (82)
Q Consensus 14 QYFTar~p~F~~~V~~w~~~G~v~~W~~~~~~~~~~~~s~~p~~~~~p~m~~~~ 67 (82)
-.|.+..+++.+.++.+.+.|+- .+....... ....+ .++.+|+=|.++
T Consensus 70 ~~f~v~~~dv~~~~~~l~~~gv~-i~~~~~~~~-~~~~~---~~~~DPdGn~iE 118 (130)
T d1r9ca_ 70 IAFKIDDADFDRYAERVGKLGLD-MRPPRPRVE-GEGRS---IYFYDDDNHMFE 118 (130)
T ss_dssp EEEECCGGGHHHHHHHHHHHTCC-BCCCCC------CCE---EEEECTTSCEEE
T ss_pred eeecccHHHHHHHHHHHHHCCCe-EecCCcccC-CCEEE---EEEECCCCCEEE
Confidence 35667778899999999999865 333222221 11222 458888866654
No 10
>d1qipa_ d.32.1.1 (A:) Glyoxalase I (lactoylglutathione lyase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.26 E-value=74 Score=18.30 Aligned_cols=53 Identities=8% Similarity=-0.130 Sum_probs=36.6
Q ss_pred cccCCceeEecCcchHHHHHHHHHCCcccCCCCcccccCCCCCCcCcccccCCcccccc
Q 044685 9 FGHAAQFITVNDYRFHPSVNGWLERGLHCHPCFSLSLHLSLSHSLSPLMCELPQMHLQN 67 (82)
Q Consensus 9 fDHGAQYFTar~p~F~~~V~~w~~~G~v~~W~~~~~~~~~~~~s~~p~~~~~p~m~~~~ 67 (82)
-+.|..+++...+.+.+..+.+.+.|+--..... ++.. ..-+++.+|+=+.++
T Consensus 113 ~~~g~~h~~~~~~d~~~~~~~l~~~Gv~~~~~p~----~g~~--~~~~f~~DPdG~~IE 165 (176)
T d1qipa_ 113 DPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPD----DGKM--KGLAFIQDPDGYWIE 165 (176)
T ss_dssp SSCBEEEEEEECSCHHHHHHHHHHTTCEEEECTT----SSSS--TTCEEEECTTCCEEE
T ss_pred CccceeEEEeeHHHHHHHHHHHHHCCCEEeeCCc----cCCc--eEEEEEECCCCCEEE
Confidence 4568889999999999999999999985443321 1111 122678888876554
Done!