BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044686
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 57/89 (64%)
Query: 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
ITCGQV+S + PCL Y G A PS ACC+GV LK TTADR+ AC C+K+AA +G
Sbjct: 1 ITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKG 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
+ A +P +CGV + I+ IDCS+
Sbjct: 61 LNAGNAASIPSKCGVSVPYTISASIDCSR 89
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 90.9 bits (224), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/90 (55%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 41 AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
AITCGQV S LAPCLAYL R CC GV+ L ++ TT DRQ AC C+K AA
Sbjct: 1 AITCGQVTSNLAPCLAYLRNTGPLGR-CCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59
Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDCSK 130
GI L KA LP CGV+I I+P DCSK
Sbjct: 60 GINLGKAAGLPSTCGVNIPYKISPSTDCSK 89
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 41 AITCGQVDSFLAPCLAYLTGEAK-PSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRY 99
AI+CGQV S +APC++Y G+ PS CC+GV L + TTADR+AAC C+K+AA
Sbjct: 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGV 60
Query: 100 RGIKLDKARQLPKECGVDIGVPITPDIDCSK 130
G+ A +P +CGV I I+ DCS+
Sbjct: 61 SGLNAGNAASIPSKCGVSIPYTISTSTDCSR 91
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
+ CGQVDS + PCL Y+ G PS CC GV L + ++ DRQ C C+K A
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
+ L+ A +P +C V++ I+PDIDCS+
Sbjct: 61 LNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
+ CGQVDS + PCL Y+ G PS CC GV L + ++ DRQ C C+K A
Sbjct: 1 LNCGQVDSKMKPCLTYVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHN 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
+ L+ A +P +C V++ I+PDIDCS+
Sbjct: 61 LNLNNAASIPSKCNVNVPYTISPDIDCSR 89
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 83.2 bits (204), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
I CG VDS + PCL+Y+ G PS CC GV+ L + + +DRQ+AC C+K A
Sbjct: 1 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
+ D AR +P +CGV++ I+ +IDCS+
Sbjct: 61 LNEDNARSIPPKCGVNLPYTISLNIDCSR 89
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 81.6 bits (200), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%)
Query: 44 CGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIK 103
CG VDS + PCL+Y+ G PS CC GV+ L + + +DRQ+AC C+K A +
Sbjct: 3 CGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLN 62
Query: 104 LDKARQLPKECGVDIGVPITPDIDCSK 130
D AR +P +CGV++ I+ +IDCS+
Sbjct: 63 EDNARSIPPKCGVNLPYTISLNIDCSR 89
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 53/89 (59%)
Query: 41 AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYR 100
AI+CG V S L+PCL YLTG PS CC GV+ L TT DRQAAC C+K AA
Sbjct: 1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 101 GIKLDKARQLPKECGVDIGVPITPDIDCS 129
+ + A LP +CGV+I I+ +C+
Sbjct: 61 KLNTNNAAALPGKCGVNIPYKISTTTNCN 89
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
ITCGQV S LAPC+ Y+ G ACC G+ + + TT DRQAAC C+K + G
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPG 61
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCS 129
+ + A LP +CGV I I+ +C+
Sbjct: 62 VNPNNAAALPGKCGVSIPYKISASTNCA 89
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 54/89 (60%)
Query: 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRG 101
+TCGQV LA C+ +L +CCTGV+ + +++ TTADR+A C C+K AA RG
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRG 60
Query: 102 IKLDKARQLPKECGVDIGVPITPDIDCSK 130
I + A LP +CGV+I I+ +C+
Sbjct: 61 INPNNAEALPGKCGVNIPYKISTSTNCNS 89
>pdb|3SZ8|A Chain A, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|B Chain B, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|C Chain C, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3SZ8|D Chain D, Crystal Structure Of 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei
pdb|3TMQ|A Chain A, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|B Chain B, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|C Chain C, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3TMQ|D Chain D, Crystal Structure Of A 2-Dehydro-3-Deoxyphosphooctonate
Aldolase From Burkholderia Pseudomallei In Complex With
D-Arabinose-5-Phosphate
pdb|3UND|A Chain A, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|B Chain B, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|C Chain C, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
pdb|3UND|D Chain D, Substrate-Bound Crystal Structure Of
2-Dehydro-3-Deoxyphosphooctonate Aldolase From
Burkholderia Pseudomallei
Length = 285
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 90 KCIKDAATRYRGIKLDKARQLPKECGVDIGVPITPDI 126
K + + YRG+ LD+ ++ E GVP+ D+
Sbjct: 62 KANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDV 98
>pdb|1YWF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Protein
Tyrosine Phosphatase Ptpb
pdb|2OZ5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Protein
Tyrosine Phosphatase Ptpb In Complex With The Specific
Inhibitor Omts
pdb|2OZ5|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Protein
Tyrosine Phosphatase Ptpb In Complex With The Specific
Inhibitor Omts
Length = 296
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 70 TGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECG 115
T + L N + + + + I DAATRY D+ RQ P G
Sbjct: 116 TAFKRLLTNDGSNGESGESSQSINDAATRY---MTDEYRQFPTRNG 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,395,625
Number of Sequences: 62578
Number of extensions: 108931
Number of successful extensions: 175
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 15
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)