Query 044686
Match_columns 130
No_of_seqs 134 out of 1032
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 8.5E-26 1.8E-30 152.5 3.6 88 42-129 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.5 6.4E-15 1.4E-19 96.2 1.8 67 44-120 1-70 (73)
3 PF14368 LTP_2: Probable lipid 99.3 7.6E-14 1.6E-18 94.0 -0.9 71 39-120 17-93 (96)
4 cd00010 AAI_LTSS AAI_LTSS: Alp 99.3 5.3E-13 1.2E-17 84.1 1.3 61 51-116 1-63 (63)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.3 1.5E-12 3.2E-17 84.0 2.2 58 49-119 4-64 (66)
6 smart00499 AAI Plant lipid tra 98.8 1.7E-09 3.6E-14 69.1 2.3 68 44-120 1-76 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.8 5.4E-11 1.2E-15 79.5 -5.1 65 49-128 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 93.3 0.032 7E-07 37.6 0.6 73 44-122 2-82 (85)
9 cd01958 HPS_like HPS_like: Hyd 91.1 0.13 2.7E-06 34.7 1.4 72 43-121 3-82 (85)
10 PRK11901 hypothetical protein; 44.9 26 0.00057 29.1 3.3 24 14-37 34-57 (327)
11 PLN00214 putative protein; Pro 38.8 9.8 0.00021 27.0 -0.1 52 22-75 10-72 (115)
12 PF15106 TMEM156: TMEM156 prot 28.4 50 0.0011 26.0 2.3 18 17-34 173-190 (226)
13 PRK03814 oxaloacetate decarbox 23.3 1.4E+02 0.003 19.8 3.5 23 13-35 10-32 (85)
14 PF02656 DUF202: Domain of unk 21.5 1.2E+02 0.0027 18.7 2.9 30 6-35 2-31 (73)
15 PF15188 CCDC-167: Coiled-coil 21.3 65 0.0014 21.6 1.5 26 4-31 55-80 (85)
16 COG4068 Uncharacterized protei 20.6 1.5E+02 0.0032 18.8 2.9 7 13-19 39-45 (64)
17 PF13808 DDE_Tnp_1_assoc: DDE_ 20.5 52 0.0011 21.7 1.0 30 6-35 6-35 (90)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.92 E-value=8.5e-26 Score=152.54 Aligned_cols=88 Identities=57% Similarity=1.039 Sum_probs=81.7
Q ss_pred cCccccccCcccchhhhcC-CCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCC
Q 044686 42 ITCGQVDSFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGV 120 (130)
Q Consensus 42 ~~C~~~~~~L~pCl~yl~g-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~ 120 (130)
.+|..+...|.||++|++| +..|+++||++++++++.++++.|++..|+|+++....+++||++++++||++||++++|
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 3688999999999999998 568999999999999999999999999999998877777569999999999999999999
Q ss_pred CCCCCCCCC
Q 044686 121 PITPDIDCS 129 (130)
Q Consensus 121 ~is~~~dC~ 129 (130)
+|+++|||+
T Consensus 81 ~i~~~~dC~ 89 (89)
T cd01960 81 PISPSTDCS 89 (89)
T ss_pred CCCCCCCCC
Confidence 999999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.50 E-value=6.4e-15 Score=96.25 Aligned_cols=67 Identities=34% Similarity=0.660 Sum_probs=53.7
Q ss_pred ccccccCcccchhhhcCCC---CCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCC
Q 044686 44 CGQVDSFLAPCLAYLTGEA---KPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGV 120 (130)
Q Consensus 44 C~~~~~~L~pCl~yl~g~~---~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~ 120 (130)
|+..+..|.||++|++++. .|++.||++|+++ |+ .|+|.+.....++.||.++|.+||++||+++|.
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~--~C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p~ 70 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DL--PCLCRYKTSLVLQIIDPDKAVYLPAKCGLPLPP 70 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------Cc--CCEeeccCCCcccccCHHHHHHHHHHcCCCCCC
Confidence 5555678999999999743 5888999999985 22 499976554445569999999999999999875
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.35 E-value=7.6e-14 Score=94.02 Aligned_cols=71 Identities=32% Similarity=0.811 Sum_probs=44.3
Q ss_pred ccccCccccccCcccc---hhhhcCCCCCccccccchhhhhhcCCCccccccccee--eccch-hccCCCCHHHHhhccc
Q 044686 39 QAAITCGQVDSFLAPC---LAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAA-TRYRGIKLDKARQLPK 112 (130)
Q Consensus 39 ~a~~~C~~~~~~L~pC---l~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~-~~~~~in~~~a~~LP~ 112 (130)
....+|.. +|.|| +.|+.++..|+++||++++++.+. +..|+| +++.. ..+ +||.+++..||+
T Consensus 17 ~~~~~c~~---~l~~c~~~~~~~~~~~~Ps~~CC~~l~~~~~~-------~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~ 85 (96)
T PF14368_consen 17 ACCCSCAN---SLLPCCPCLCYVTGGPAPSAACCSALKSVVQA-------DPPCLCQLLNSPGAPGF-GINVTRALALPA 85 (96)
T ss_dssp -BTTB-HC---CCCHH--HHHHHCC-----HHHHHHHCC-----------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHH
T ss_pred CCcchhHH---HHhccccchhccCCCCCCCHHHHHHHHHhccC-------CCCCHHHhcCccccccC-CcCHHHHHHHHH
Confidence 34456654 46666 788887789999999999998532 356777 44433 344 799999999999
Q ss_pred ccCCCCCC
Q 044686 113 ECGVDIGV 120 (130)
Q Consensus 113 ~Cgv~~p~ 120 (130)
+||+++|+
T Consensus 86 ~Cg~~~~~ 93 (96)
T PF14368_consen 86 ACGVPVPP 93 (96)
T ss_dssp HCTSS-S-
T ss_pred HcCCCCCC
Confidence 99999876
No 4
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.31 E-value=5.3e-13 Score=84.10 Aligned_cols=61 Identities=34% Similarity=0.844 Sum_probs=46.0
Q ss_pred cccchhhhcC-CCCCccccccchhhhhhcCCCcccccccceeeccchhccCCC-CHHHHhhcccccCC
Q 044686 51 LAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGI-KLDKARQLPKECGV 116 (130)
Q Consensus 51 L~pCl~yl~g-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~i-n~~~a~~LP~~Cgv 116 (130)
|.||++|++| +..|+++||++++++++. |++..|.++++......++ |.+++..||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 6799999998 478999999999999753 3333333366544433345 79999999999996
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.28 E-value=1.5e-12 Score=83.96 Aligned_cols=58 Identities=33% Similarity=0.749 Sum_probs=48.3
Q ss_pred cCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee-ec-c-chhccCCCCHHHHhhcccccCCCCC
Q 044686 49 SFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC-IK-D-AATRYRGIKLDKARQLPKECGVDIG 119 (130)
Q Consensus 49 ~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C-l~-~-~~~~~~~in~~~a~~LP~~Cgv~~p 119 (130)
..|.+|++|++++.+||++||+.+|+ +..|+| ++ + .+..+ ||.++|++||++||+++|
T Consensus 4 ~~L~~C~~ai~~~~~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~~--i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGGSPPSAACCAKLKE-----------QQSCLCQYAKNPSLKQY--VNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCCCCCCHHHHHHHhc-----------CCCCeeeeecCccHHhh--cCcHHHHHHHHHcCCCCC
Confidence 38999999999878999999999998 347999 33 3 33344 999999999999999985
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.84 E-value=1.7e-09 Score=69.12 Aligned_cols=68 Identities=43% Similarity=0.795 Sum_probs=51.9
Q ss_pred ccccccCcccchhhhcCC---CCCccccccchhhhhhcCCCcccccccceeecc--chhccCC---CCHHHHhhcccccC
Q 044686 44 CGQVDSFLAPCLAYLTGE---AKPSRACCTGVEYLKDNTPTTADRQAACKCIKD--AATRYRG---IKLDKARQLPKECG 115 (130)
Q Consensus 44 C~~~~~~L~pCl~yl~g~---~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~--~~~~~~~---in~~~a~~LP~~Cg 115 (130)
|..+...+.+|.+|++++ ..|+..||++++.+. ...|+|... ....+.. ++..++..||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 556666778999999973 478899999999984 247999533 2222211 58999999999999
Q ss_pred CCCCC
Q 044686 116 VDIGV 120 (130)
Q Consensus 116 v~~p~ 120 (130)
+.+++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 99876
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.83 E-value=5.4e-11 Score=79.54 Aligned_cols=65 Identities=35% Similarity=0.794 Sum_probs=50.8
Q ss_pred cCcccchhhhcC-CCCCccccccchhhhhhcCCCccccccccee--eccchhcc----------CCCCHHHHhhcccccC
Q 044686 49 SFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRY----------RGIKLDKARQLPKECG 115 (130)
Q Consensus 49 ~~L~pCl~yl~g-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~----------~~in~~~a~~LP~~Cg 115 (130)
..+.+|.+|+++ ...|+..||++|+.+. ..|+| ++...... .+++..+|..||+.||
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~----------~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~ 82 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLD----------PQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCN 82 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHhcccccchHHHhHHHHHHh----------HHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCC
Confidence 458999999998 4578999999999993 35666 55544431 2588999999999999
Q ss_pred CCCCCCCCCCCCC
Q 044686 116 VDIGVPITPDIDC 128 (130)
Q Consensus 116 v~~p~~is~~~dC 128 (130)
+++++ +||
T Consensus 83 v~~~~-----~~C 90 (90)
T PF00234_consen 83 VSPPY-----TDC 90 (90)
T ss_dssp SSSSS-----S-G
T ss_pred CCCCC-----CCC
Confidence 99998 666
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=93.28 E-value=0.032 Score=37.56 Aligned_cols=73 Identities=23% Similarity=0.443 Sum_probs=45.2
Q ss_pred ccccccCcccchhhhc--C---CCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHH-HHhhcccccC
Q 044686 44 CGQVDSFLAPCLAYLT--G---EAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLD-KARQLPKECG 115 (130)
Q Consensus 44 C~~~~~~L~pCl~yl~--g---~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~-~a~~LP~~Cg 115 (130)
|.....+|.-|.+.+. + +.++..+||.-++.+.+. --+.|+| +|...-++.++|.+ ....|-..||
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CG 75 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACG 75 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhC
Confidence 5444457788998881 1 245678999999998642 1357999 44322221133333 3455778899
Q ss_pred CCCCCCC
Q 044686 116 VDIGVPI 122 (130)
Q Consensus 116 v~~p~~i 122 (130)
...|..+
T Consensus 76 k~~p~gf 82 (85)
T PF14547_consen 76 KTVPSGF 82 (85)
T ss_pred CcCcCCC
Confidence 8876443
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=91.11 E-value=0.13 Score=34.74 Aligned_cols=72 Identities=26% Similarity=0.420 Sum_probs=44.6
Q ss_pred CccccccCcccchhhhcC-----CCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHHH-Hhhccccc
Q 044686 43 TCGQVDSFLAPCLAYLTG-----EAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLDK-ARQLPKEC 114 (130)
Q Consensus 43 ~C~~~~~~L~pCl~yl~g-----~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~-a~~LP~~C 114 (130)
.|.....+|.-|..-+.. +.+|..+||.-++.+.+. | -+.|+| +|...-++ .+|.+- ..-|-..|
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl-----d-AA~CLCtaikan~lgi-~~~~pv~l~llln~C 75 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL-----D-AAVCLCTAIKANILGI-SINIPVALSLLLNSC 75 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh-----h-eeeeeeeeeeccccCc-ccccChhHHHHHHHH
Confidence 455555567788887743 246678999999998653 1 358999 44322222 233333 44466679
Q ss_pred CCCCCCC
Q 044686 115 GVDIGVP 121 (130)
Q Consensus 115 gv~~p~~ 121 (130)
|...|..
T Consensus 76 Gk~~P~g 82 (85)
T cd01958 76 GRNVPPG 82 (85)
T ss_pred cCcCCCC
Confidence 9987753
No 10
>PRK11901 hypothetical protein; Reviewed
Probab=44.91 E-value=26 Score=29.13 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhcc
Q 044686 14 SLENMKAGVVLAVILMAAIVMVER 37 (130)
Q Consensus 14 ~~~~m~~~~~~~~~ll~~ml~~~~ 37 (130)
||.-||++.=++|+||+++..+++
T Consensus 34 SRQh~MiGiGilVLlLLIi~IgSA 57 (327)
T PRK11901 34 SRQHMMIGIGILVLLLLIIAIGSA 57 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 678899998888887777777664
No 11
>PLN00214 putative protein; Provisional
Probab=38.81 E-value=9.8 Score=26.99 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhcc----cccc---cCccccccCcccchhhhcC----CCCCccccccchhhh
Q 044686 22 VVLAVILMAAIVMVER----GQAA---ITCGQVDSFLAPCLAYLTG----EAKPSRACCTGVEYL 75 (130)
Q Consensus 22 ~~~~~~ll~~ml~~~~----a~a~---~~C~~~~~~L~pCl~yl~g----~~~Ps~~CC~~v~~l 75 (130)
.++.++.++++++++- +++. .+|..-.+ .-|..-+.. ..++|.+||..+-..
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~C~~Kmt--~KCa~EI~a~i~~N~t~s~~CC~~LVk~ 72 (115)
T PLN00214 10 TLFIVVALVCAFVPVFSVEEAEAKSLWNTCLVKIT--PKCALDIIAVVFENGTLIDPCCNDLVKE 72 (115)
T ss_pred HHHHHHHHHHhcccccchhhhHHHHHHHHHHhhcc--HhhHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 3455555666666542 3332 25654322 347765542 357899999987553
No 12
>PF15106 TMEM156: TMEM156 protein family
Probab=28.38 E-value=50 Score=26.00 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 044686 17 NMKAGVVLAVILMAAIVM 34 (130)
Q Consensus 17 ~m~~~~~~~~~ll~~ml~ 34 (130)
.|+.+|.+++++|.++++
T Consensus 173 smKITWYvLVllVfifli 190 (226)
T PF15106_consen 173 SMKITWYVLVLLVFIFLI 190 (226)
T ss_pred ehhhHHHHHHHHHHHHHH
Confidence 578888888876655544
No 13
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=23.26 E-value=1.4e+02 Score=19.84 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=16.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Q 044686 13 ASLENMKAGVVLAVILMAAIVMV 35 (130)
Q Consensus 13 ~~~~~m~~~~~~~~~ll~~ml~~ 35 (130)
.+.+.|..++.++++++++|+..
T Consensus 10 ~~~~lm~~GM~~VF~fL~lLi~~ 32 (85)
T PRK03814 10 DAATLMLTGMGVVFIFLTLLVYL 32 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888877777766555554
No 14
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=21.52 E-value=1.2e+02 Score=18.68 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=22.9
Q ss_pred ccccCchHHHHhHHHHHHHHHHHHHHHHhh
Q 044686 6 KHLQNPRASLENMKAGVVLAVILMAAIVMV 35 (130)
Q Consensus 6 ~~~~~~~~~~~~m~~~~~~~~~ll~~ml~~ 35 (130)
.||+|.|--+.-+..++.++.+-++++-..
T Consensus 2 ~~lA~ERT~LaW~Rt~l~l~~~g~~l~~~~ 31 (73)
T PF02656_consen 2 DGLANERTFLAWIRTALALVGVGLALLRFF 31 (73)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999988888888877765555543
No 15
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.29 E-value=65 Score=21.62 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=11.0
Q ss_pred CcccccCchHHHHhHHHHHHHHHHHHHH
Q 044686 4 NTKHLQNPRASLENMKAGVVLAVILMAA 31 (130)
Q Consensus 4 ~~~~~~~~~~~~~~m~~~~~~~~~ll~~ 31 (130)
|-+.|+.-|. +|=+..++.+++++++
T Consensus 55 ~E~eL~~Lrk--ENrK~~~ls~~l~~v~ 80 (85)
T PF15188_consen 55 NEKELKLLRK--ENRKSMLLSVALFFVC 80 (85)
T ss_pred cHHHHHHHHH--hhhhhHHHHHHHHHHH
Confidence 3344444443 3334444444443333
No 16
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=20.61 E-value=1.5e+02 Score=18.79 Aligned_cols=7 Identities=14% Similarity=-0.121 Sum_probs=2.7
Q ss_pred HHHHhHH
Q 044686 13 ASLENMK 19 (130)
Q Consensus 13 ~~~~~m~ 19 (130)
|-++.|.
T Consensus 39 R~r~~~~ 45 (64)
T COG4068 39 RQRNFMI 45 (64)
T ss_pred HHHHHHH
Confidence 3333333
No 17
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=20.47 E-value=52 Score=21.67 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=15.3
Q ss_pred ccccCchHHHHhHHHHHHHHHHHHHHHHhh
Q 044686 6 KHLQNPRASLENMKAGVVLAVILMAAIVMV 35 (130)
Q Consensus 6 ~~~~~~~~~~~~m~~~~~~~~~ll~~ml~~ 35 (130)
+.+.+||..+++.-.-..+++++++.++.+
T Consensus 6 ~~i~DpR~~~~~ry~L~~iL~i~~~a~l~G 35 (90)
T PF13808_consen 6 SQIPDPRSRRGRRYPLADILLIALCAVLCG 35 (90)
T ss_pred hCCCCCcccCCceecHHHHHHHHHHHHHHc
Confidence 457889986644433333333344444444
Done!