Query 044686
Match_columns 130
No_of_seqs 134 out of 1032
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljo_A Non-specific lipid-tran 100.0 2.9E-30 1E-34 175.7 -1.2 90 41-130 1-90 (93)
2 1bwo_A NS-LTP1, nonspecific li 99.9 1.6E-29 5.3E-34 171.0 -1.2 89 42-130 1-89 (90)
3 1afh_A Maize nonspecific lipid 99.9 3.6E-29 1.2E-33 170.0 -0.3 90 41-130 1-91 (93)
4 1siy_A LTP 1, NS-LTP1, nonspec 99.9 5.5E-29 1.9E-33 168.5 0.4 89 42-130 1-89 (91)
5 1t12_A LTP 1, nonspecific lipi 99.9 7E-29 2.4E-33 168.1 -0.0 88 42-130 2-89 (91)
6 2alg_A Non-specific lipid tran 99.9 5.3E-29 1.8E-33 168.9 -1.9 89 42-130 2-90 (92)
7 2rkn_A DIR1 protein, AT5G48485 99.6 1.1E-16 3.9E-21 104.6 -0.0 70 41-121 2-76 (77)
8 1n89_A Lipid transfer protein; 99.4 4.8E-15 1.6E-19 94.7 -1.1 59 49-119 5-65 (67)
9 1l6h_A LTP2, non-specific lipi 99.4 7.6E-15 2.6E-19 94.3 -1.2 63 43-119 2-66 (69)
10 3ob4_A Conglutin, maltose ABC 89.1 0.037 1.3E-06 45.6 -1.8 50 66-124 429-492 (500)
11 1hyp_A Hydrophobic protein fro 82.1 0.4 1.4E-05 31.0 0.8 67 42-122 6-75 (80)
12 1hss_A 0.19 alpha-amylase inhi 76.5 0.15 5.2E-06 35.6 -2.7 61 50-120 16-105 (124)
13 1b1u_A Protein (alpha-amylase/ 73.2 0.12 4.2E-06 35.9 -3.9 61 50-120 16-109 (122)
14 1sm7_A Recombinant IB pronapin 71.1 0.56 1.9E-05 31.5 -0.9 59 50-118 14-100 (109)
15 1s6d_A Albumin 8; all helix, f 69.4 1.1 3.8E-05 29.9 0.3 67 41-117 8-97 (103)
16 2ds2_B Sweet protein mabinlin- 67.0 0.94 3.2E-05 28.4 -0.4 43 66-118 8-63 (72)
17 1psy_A 2S albumin, RICC3; albu 65.0 1.2 4E-05 30.9 -0.3 70 42-121 16-121 (125)
18 1pnb_B Napin BNIB; napin IA an 64.5 0.73 2.5E-05 29.1 -1.3 46 64-119 10-67 (75)
19 1xrd_A LH-1, light-harvesting 40.1 35 0.0012 20.0 3.4 29 7-35 6-34 (52)
20 2lvf_A 2S albumin; allergen, c 31.4 21 0.00073 23.9 1.7 59 50-118 17-102 (114)
21 2e2s_A Agelenin; cystine knot, 28.4 20 0.00068 19.3 0.9 20 54-73 3-23 (36)
22 1lgh_A LH II, B800/850, light 20.2 1.5E+02 0.005 17.5 3.8 28 8-35 12-39 (56)
No 1
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=99.95 E-value=2.9e-30 Score=175.68 Aligned_cols=90 Identities=47% Similarity=0.860 Sum_probs=85.0
Q ss_pred ccCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCC
Q 044686 41 AITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGV 120 (130)
Q Consensus 41 ~~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~ 120 (130)
+++|+++...|.||++||+|++.|++.||+|+++|++.++|+.|||..|.|+++....+++||.++|.+||++||+++||
T Consensus 1 AisC~~v~~~L~pCl~Yv~g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p~ 80 (93)
T 2ljo_A 1 AISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPY 80 (93)
T ss_dssp CCSSHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCSS
T ss_pred CCCHHHHHHHHHhHHHHHcCCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCCC
Confidence 46899999999999999999778999999999999999999999999999999877777789999999999999999999
Q ss_pred CCCCCCCCCC
Q 044686 121 PITPDIDCSK 130 (130)
Q Consensus 121 ~is~~~dC~~ 130 (130)
+||+++||++
T Consensus 81 ~Is~~~dC~~ 90 (93)
T 2ljo_A 81 KISTTTNCNT 90 (93)
T ss_dssp CCSTTCCGGG
T ss_pred CCCCCCCCCC
Confidence 9999999985
No 2
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=99.94 E-value=1.6e-29 Score=170.95 Aligned_cols=89 Identities=43% Similarity=0.943 Sum_probs=82.7
Q ss_pred cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCCC
Q 044686 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVP 121 (130)
Q Consensus 42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~~ 121 (130)
++|+++...|.||++|++|++.|+++||++|+++++.|+|+.|||..|+|+++....+++||+++|++||++||+++||+
T Consensus 1 i~C~~v~~~L~pCl~y~~~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~~ 80 (90)
T 1bwo_A 1 IDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPYT 80 (90)
T ss_dssp CCHHHHHHHHGGGHHHHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSSC
T ss_pred CCHHHHHHhhcccHHHHcCCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCCC
Confidence 46999999999999999985459999999999999999999999999999988777777899999999999999999999
Q ss_pred CCCCCCCCC
Q 044686 122 ITPDIDCSK 130 (130)
Q Consensus 122 is~~~dC~~ 130 (130)
||+++||++
T Consensus 81 is~~~dC~~ 89 (90)
T 1bwo_A 81 ISLNIDCSR 89 (90)
T ss_dssp CCTTCCGGG
T ss_pred CCCCCCCCC
Confidence 999999985
No 3
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=99.94 E-value=3.6e-29 Score=170.04 Aligned_cols=90 Identities=47% Similarity=0.936 Sum_probs=83.6
Q ss_pred ccCccccccCcccchhhhcC-CCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCC
Q 044686 41 AITCGQVDSFLAPCLAYLTG-EAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIG 119 (130)
Q Consensus 41 ~~~C~~~~~~L~pCl~yl~g-~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p 119 (130)
+++|+++...|.||++|++| +..|+++||+||+++++.|+|+.|||..|+|++.....+++||+++|++||++||+++|
T Consensus 1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p 80 (93)
T 1afh_A 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP 80 (93)
T ss_dssp CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence 36899999999999999998 55788899999999999999999999999999877777778999999999999999999
Q ss_pred CCCCCCCCCCC
Q 044686 120 VPITPDIDCSK 130 (130)
Q Consensus 120 ~~is~~~dC~~ 130 (130)
|+||++|||++
T Consensus 81 ~~is~~~dC~~ 91 (93)
T 1afh_A 81 YTISTSTDCSR 91 (93)
T ss_dssp SCCSTTCCSSS
T ss_pred CCCCCCCCCcc
Confidence 99999999986
No 4
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=99.94 E-value=5.5e-29 Score=168.50 Aligned_cols=89 Identities=42% Similarity=0.824 Sum_probs=82.8
Q ss_pred cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCCC
Q 044686 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVP 121 (130)
Q Consensus 42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~~ 121 (130)
++|+++...|.||++|++|++.|+++||++|+++++.|+|+.|||..|+|+++.+..+++||+++|++||++||+++||+
T Consensus 1 i~C~~v~~~L~pCl~yv~~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~~ 80 (91)
T 1siy_A 1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYK 80 (91)
T ss_dssp CCTTTTHHHHHHHHHHHTSCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSSC
T ss_pred CCHHHHHHhccCcHHHHhCCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCCC
Confidence 47999999999999999985459999999999999999999999999999988777777899999999999999999999
Q ss_pred CCCCCCCCC
Q 044686 122 ITPDIDCSK 130 (130)
Q Consensus 122 is~~~dC~~ 130 (130)
||+++||++
T Consensus 81 is~~~dC~~ 89 (91)
T 1siy_A 81 ISTSTNCNS 89 (91)
T ss_dssp SCTTSCSST
T ss_pred CCCCCCCcc
Confidence 999999986
No 5
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=99.94 E-value=7e-29 Score=168.10 Aligned_cols=88 Identities=55% Similarity=0.937 Sum_probs=81.7
Q ss_pred cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCCC
Q 044686 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVP 121 (130)
Q Consensus 42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~~ 121 (130)
++|+++...|.||++|++|+..|+ +||+||+++++.|+|+.|||..|+|+++.+..+++||+++|++||++||+++||+
T Consensus 2 ~~C~~v~~~L~pCl~y~~~~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~~ 80 (91)
T 1t12_A 2 ITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYK 80 (91)
T ss_dssp CCHHHHHHHTHHHHHHHTTSSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCSSC
T ss_pred CChHHHHHhccCcHHHHcCCCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCCCC
Confidence 689999999999999999843388 9999999999999999999999999988777787899999999999999999999
Q ss_pred CCCCCCCCC
Q 044686 122 ITPDIDCSK 130 (130)
Q Consensus 122 is~~~dC~~ 130 (130)
||++|||++
T Consensus 81 is~~~dC~~ 89 (91)
T 1t12_A 81 ISPSTDCSK 89 (91)
T ss_dssp SSSSSCCTT
T ss_pred CCCCCCCcc
Confidence 999999986
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=99.94 E-value=5.3e-29 Score=168.88 Aligned_cols=89 Identities=42% Similarity=0.851 Sum_probs=83.1
Q ss_pred cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCcccccccceeeccchhccCCCCHHHHhhcccccCCCCCCC
Q 044686 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKCIKDAATRYRGIKLDKARQLPKECGVDIGVP 121 (130)
Q Consensus 42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~~p~~ 121 (130)
++|+++...|.||++|++|++.|+++||++|++|++.|+|+.|||..|+|++.....+++||+++|++||++||+++||+
T Consensus 2 ~~C~~v~~~L~pCl~y~~~~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p~~ 81 (92)
T 2alg_A 2 ITCGQVSSSLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIPYK 81 (92)
T ss_dssp CCHHHHHHHHGGGHHHHHHCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCSSC
T ss_pred CChHHHHHhccCcHHHHcCCCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCCCC
Confidence 67999999999999999986678899999999999999999999999999987777777899999999999999999999
Q ss_pred CCCCCCCCC
Q 044686 122 ITPDIDCSK 130 (130)
Q Consensus 122 is~~~dC~~ 130 (130)
||++|||++
T Consensus 82 is~~~dC~~ 90 (92)
T 2alg_A 82 ISASTNCAT 90 (92)
T ss_dssp SSTTSCGGG
T ss_pred CCCCCCCcc
Confidence 999999985
No 7
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=99.58 E-value=1.1e-16 Score=104.62 Aligned_cols=70 Identities=30% Similarity=0.606 Sum_probs=59.4
Q ss_pred ccCccccccCcccchhhhcCC--CCCccccccchhhhhhcCCCcccccccceeeccc---hhccCCCCHHHHhhcccccC
Q 044686 41 AITCGQVDSFLAPCLAYLTGE--AKPSRACCTGVEYLKDNTPTTADRQAACKCIKDA---ATRYRGIKLDKARQLPKECG 115 (130)
Q Consensus 41 ~~~C~~~~~~L~pCl~yl~g~--~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~Cl~~~---~~~~~~in~~~a~~LP~~Cg 115 (130)
..+|+++...|.||++|++++ ..|+++||++||+. | ..|+|.+.. +..+ +||+++|++||++||
T Consensus 2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~~--------~--~~ClC~~~~~~~~~~~-gin~~~A~~LP~~Cg 70 (77)
T 2rkn_A 2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA--------D--FACLCGYKNSPWLGSF-GVDPELASALPKQCG 70 (77)
T ss_dssp CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTTC--------C--HHHHHTTTTCHHHHHH-TBCHHHHHHHHHHTT
T ss_pred cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHhc--------C--cCCcCcccCCcchhhc-CcCHHHHHHHHHHcC
Confidence 468999999999999999973 68999999999982 3 389996543 5667 799999999999999
Q ss_pred CCCCCC
Q 044686 116 VDIGVP 121 (130)
Q Consensus 116 v~~p~~ 121 (130)
+++||.
T Consensus 71 v~~p~~ 76 (77)
T 2rkn_A 71 LANAPT 76 (77)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 999874
No 8
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=99.44 E-value=4.8e-15 Score=94.70 Aligned_cols=59 Identities=34% Similarity=0.586 Sum_probs=48.9
Q ss_pred cCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHHHHhhcccccCCCCC
Q 044686 49 SFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLDKARQLPKECGVDIG 119 (130)
Q Consensus 49 ~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~~p 119 (130)
+.|.||++|+++++.||++||++||+ +..|+| +++..... +||.++|++||++||+++|
T Consensus 5 ~~L~pC~~~v~~~~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P 65 (67)
T 1n89_A 5 SQLAVCASAILSGAKPSGECCGNLRA-----------QQGCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP 65 (67)
T ss_dssp STTHHHHHHHTTCCCCCHHHHHHHHH-----------HSSHHHHGGGCSTTHH-HHTCHHHHHHHHHHTSCCS
T ss_pred hhcccCHHHHcCCCCCCHHHHHhhCC-----------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence 37999999999877899999999997 358999 55522221 5999999999999999876
No 9
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=99.42 E-value=7.6e-15 Score=94.28 Aligned_cols=63 Identities=29% Similarity=0.618 Sum_probs=50.7
Q ss_pred CccccccCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHHHHhhcccccCCCCC
Q 044686 43 TCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLDKARQLPKECGVDIG 119 (130)
Q Consensus 43 ~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~~p 119 (130)
+|... .|.||++|++++.+||++||++||+ +..|+| +++..... +||.++|.+||++||+++|
T Consensus 2 ~C~~~--~L~pC~~~v~~~~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~~-~in~~~A~~Lp~~Cgv~~P 66 (69)
T 1l6h_A 2 GCNAG--QLTVCTGAIAGGARPTAACCSSLRA-----------QQGCFCQFAKDPRYGR-YVNSPNARKAVSSCGIALP 66 (69)
T ss_dssp CSTTT--THHHHHHHHTTCCSTTHHHHHHHHH-----------HHHHHHHHTTCSSHHH-HTTTTTGGGCCCCCSSCSC
T ss_pred CCChh--hcccCHHHHcCCCCCCHHHHHhhCC-----------CCCCCCccccCccccc-ccCHHHHHHHHHHcCCCCC
Confidence 35543 8999999999877899999999997 358999 55522222 5999999999999999876
No 10
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=89.08 E-value=0.037 Score=45.55 Aligned_cols=50 Identities=18% Similarity=0.583 Sum_probs=32.0
Q ss_pred cccccchhhhhhcCCCccccccccee--eccchhc----------cCCCCHHHHhhcccccCCCCC--CCCCC
Q 044686 66 RACCTGVEYLKDNTPTTADRQAACKC--IKDAATR----------YRGIKLDKARQLPKECGVDIG--VPITP 124 (130)
Q Consensus 66 ~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~----------~~~in~~~a~~LP~~Cgv~~p--~~is~ 124 (130)
.+||+.|+.+.+ ..-|+| ++..+.. ...+ ..+|..||..||+..| .+|+.
T Consensus 429 ~~cc~~l~~~~~--------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~p~~c~~~~~~~c~~~~ 492 (500)
T 3ob4_A 429 ERCCNELNEFEN--------NQRCMCEALQQIMENQSDRLQGRQQEQQF-KRELRNLPQQCGLRAPQRCDLDV 492 (500)
T ss_dssp HHHHHHHGGGTT--------CHHHHHHHHHHHHHHHHTTCCSSHHHHHH-HHHHHTHHHHTTCCCCSCCCCC-
T ss_pred HHHHHHHHhCCc--------ccccccHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhCchhcCCCCCccCCccC
Confidence 579999998731 256888 5443321 0012 3459999999999866 45554
No 11
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=82.15 E-value=0.4 Score=31.01 Aligned_cols=67 Identities=25% Similarity=0.513 Sum_probs=45.2
Q ss_pred cCccccccCcccchhhhcCCCCCccccccchhhhhhcCCCccccccccee--eccchhccCCCCHHHHhh-cccccCCCC
Q 044686 42 ITCGQVDSFLAPCLAYLTGEAKPSRACCTGVEYLKDNTPTTADRQAACKC--IKDAATRYRGIKLDKARQ-LPKECGVDI 118 (130)
Q Consensus 42 ~~C~~~~~~L~pCl~yl~g~~~Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~~~~in~~~a~~-LP~~Cgv~~ 118 (130)
+.|. +|.-|.+-+.|...|..+||.-++.+.+. | -+.|+| +| +-++ +|.+...+ |-..||..+
T Consensus 6 ~~CP----kLgvCanvL~g~~~~~~~CC~Ll~GL~dl-----e-AAvCLCtaik--~Lgi--lnlpv~L~llln~Cgk~~ 71 (80)
T 1hyp_A 6 PSCP----DLSICLNILGGSLGTVDDCCALIGGLGDI-----E-AIVCLCIQLR--ALGI--LNLNRNLQLILNSCGRSY 71 (80)
T ss_dssp CCSC----CCGGGGGGGGTCCTTHHHHHHHHHTSCHH-----H-HHHHHHHHHH--HHTC--SCHHHHHHHHHHHTTCSS
T ss_pred CCCC----chhHHHHHhCcCCCCCCccchhhhCcchh-----h-hhhhhhhhcc--ccce--eecChhHHHHHHHhCCcC
Confidence 4577 68889998865333678999999998643 1 358999 44 2122 46665555 667899987
Q ss_pred CCCC
Q 044686 119 GVPI 122 (130)
Q Consensus 119 p~~i 122 (130)
|..|
T Consensus 72 P~gF 75 (80)
T 1hyp_A 72 PSNA 75 (80)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7543
No 12
>1hss_A 0.19 alpha-amylase inhibitor; cereal inhibitor, animal amylase; 2.06A {Triticum aestivum} SCOP: a.52.1.2
Probab=76.49 E-value=0.15 Score=35.60 Aligned_cols=61 Identities=21% Similarity=0.442 Sum_probs=38.7
Q ss_pred CcccchhhhcC---C-CCC---ccccccchhhhhhcCCCccccccccee--eccchh----------------ccCC---
Q 044686 50 FLAPCLAYLTG---E-AKP---SRACCTGVEYLKDNTPTTADRQAACKC--IKDAAT----------------RYRG--- 101 (130)
Q Consensus 50 ~L~pCl~yl~g---~-~~P---s~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~----------------~~~~--- 101 (130)
.|..|..||.. + ..| -..||..++.+. .-|.| |...+. .+|+
T Consensus 16 pL~~Cr~Yv~~~C~g~~~p~~~~~~CC~QL~~i~----------~~CRC~ALr~m~~~~~~~~g~~~g~~~~e~~pgCrr 85 (124)
T 1hss_A 16 ALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHIS----------EWCRCGALYSMLDSMYKEHGAQEGQAGTGAFPRCRR 85 (124)
T ss_dssp CCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHTSC----------TTTHHHHHHHHHHHHHHHC---------CCSTTCCH
T ss_pred cchHHHHHHHHHccCCCCcHHHHHHHHHHHHhcC----------cccchHHHHHHHHhhhhhhhhhccccchhhccCCcH
Confidence 57889999963 2 223 357999999973 36888 433221 1110
Q ss_pred -CCHHHHhhcccccCCCCCC
Q 044686 102 -IKLDKARQLPKECGVDIGV 120 (130)
Q Consensus 102 -in~~~a~~LP~~Cgv~~p~ 120 (130)
+-...|..||..||++.+.
T Consensus 86 e~~~~~A~~LP~~Cnl~~~~ 105 (124)
T 1hss_A 86 EVVKLTAASITAVCRLPIVV 105 (124)
T ss_dssp HHHHHHHTTHHHHTTCCEEC
T ss_pred HHHHHHHHhchhhcCCCCCC
Confidence 1122688899999998763
No 13
>1b1u_A Protein (alpha-amylase/trypsin inhibitor RATI); bifunctional, hydrolase inhibitor; 2.20A {Eleusine coracana} SCOP: a.52.1.2 PDB: 1bip_A 1tmq_B
Probab=73.20 E-value=0.12 Score=35.94 Aligned_cols=61 Identities=23% Similarity=0.441 Sum_probs=38.2
Q ss_pred CcccchhhhcC-----CC-CC----ccccccchhhhhhcCCCccccccccee--eccchh---------------ccCCC
Q 044686 50 FLAPCLAYLTG-----EA-KP----SRACCTGVEYLKDNTPTTADRQAACKC--IKDAAT---------------RYRGI 102 (130)
Q Consensus 50 ~L~pCl~yl~g-----~~-~P----s~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~---------------~~~~i 102 (130)
.|..|..||.. ++ .| -..||..++.+. .-|.| |...+. .+|+-
T Consensus 16 ~L~~Cr~Yv~~q~C~~g~~~p~~~~~~~CC~QL~~i~----------~~CRC~ALr~m~~~~~~~~g~~~g~~~~~~pgC 85 (122)
T 1b1u_A 16 PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAIP----------AYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGC 85 (122)
T ss_dssp TTTHHHHHHHHHHHCCCCSSCHHHHHHHHHHHHHHSC----------HHHHHHHHHHHHTCEECTTSCEECCCCCCCTTC
T ss_pred cchHHHHHHHHhcccCCCCCchHHHHHHHHHHHHhCC----------ccccHHHHHHHHHhhhhhhcccccccchhccCC
Confidence 58899999953 11 23 346999999973 46888 433221 12211
Q ss_pred ----CHHHHhhc--ccccCCCCCC
Q 044686 103 ----KLDKARQL--PKECGVDIGV 120 (130)
Q Consensus 103 ----n~~~a~~L--P~~Cgv~~p~ 120 (130)
-...|..| |..||++++-
T Consensus 86 ~re~~~~~A~~Lv~P~~Cnl~~~~ 109 (122)
T 1b1u_A 86 PRQVQRAFAPKLVTEVECNLATIH 109 (122)
T ss_dssp CHHHHHHHGGGTTSTTTTCCCCTT
T ss_pred cHHHHHHHHHhcCCcccCCCCCCC
Confidence 11357789 9999998663
No 14
>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus}
Probab=71.13 E-value=0.56 Score=31.55 Aligned_cols=59 Identities=22% Similarity=0.496 Sum_probs=37.0
Q ss_pred CcccchhhhcC---C-C---CC---------ccccccchhhhhhcCCCccccccccee--eccchhc------cCC----
Q 044686 50 FLAPCLAYLTG---E-A---KP---------SRACCTGVEYLKDNTPTTADRQAACKC--IKDAATR------YRG---- 101 (130)
Q Consensus 50 ~L~pCl~yl~g---~-~---~P---------s~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~~------~~~---- 101 (130)
.|.+|..|+.- + + .| -..||..++.+. .-|.| ++..+.. +++
T Consensus 14 ~L~~C~~yv~qq~~~~~~~~~~~~~~~~~~~~qqCC~qL~~v~----------~qCrC~al~~~v~~~~~qgq~~~~~~~ 83 (109)
T 1sm7_A 14 HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQED----------QVCVCPTLKQAAKSVRVQGQHGPFQST 83 (109)
T ss_dssp CCSSHHHHGGGGTTSSCCCSCSSSCTTCCTTHHHHHHHTTTTC----------HHHHTTTTHHHHHTSSCSSCCCTTHHH
T ss_pred cHHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHHHhcC----------ccCCCHHHHHHHHHHHHhcccchHHHH
Confidence 38899999972 1 1 22 247999999973 35888 5443321 111
Q ss_pred CCHHHHhhcccccCCCC
Q 044686 102 IKLDKARQLPKECGVDI 118 (130)
Q Consensus 102 in~~~a~~LP~~Cgv~~ 118 (130)
-...+|..||..||+..
T Consensus 84 ~~~~~a~~LP~~Cnl~~ 100 (109)
T 1sm7_A 84 RIYQIAKNLPNVCNMKQ 100 (109)
T ss_dssp HHHHTTSSHHHHSCCCS
T ss_pred HHHHHHHhCHHhcCCCC
Confidence 11334778999999974
No 15
>1s6d_A Albumin 8; all helix, folded LEAF, right-handed superhelix, disulphide rich, plant protein; NMR {Helianthus annuus} SCOP: a.52.1.3
Probab=69.45 E-value=1.1 Score=29.92 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=42.6
Q ss_pred ccCccccc--cC-cccchhhhcC--C-CC----------CccccccchhhhhhcCCCccccccccee--eccch-hccCC
Q 044686 41 AITCGQVD--SF-LAPCLAYLTG--E-AK----------PSRACCTGVEYLKDNTPTTADRQAACKC--IKDAA-TRYRG 101 (130)
Q Consensus 41 ~~~C~~~~--~~-L~pCl~yl~g--~-~~----------Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~-~~~~~ 101 (130)
...|..-+ .. |.+|-.||.- . .. .-..||.-++.+. .-|.| |+..+ ..+.+
T Consensus 8 ~q~C~qq~q~~q~L~~Cq~yv~qq~~~~~~~~~~~~~e~~~qqCC~qL~~~~----------~~CrC~al~~~~Q~q~~g 77 (103)
T 1s6d_A 8 ESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD----------EKCMCPAIMMMLNEPMWI 77 (103)
T ss_dssp SSSHHHHHHHTCSTTHHHHHHTTTTSSCCCCSSSCCCCCCSHHHHHHHHHSC----------GGGSSHHHHHHTTSTTCS
T ss_pred CcccHHHHHhChhHHHHHHHHHHHhhccCCcccccccHHHHHHHHHHHHhcC----------cccCcHHHHHHHHHHhcc
Confidence 34565543 24 8999999974 1 11 2357999999873 46888 54433 22221
Q ss_pred C----CHHHHhhcccccCCC
Q 044686 102 I----KLDKARQLPKECGVD 117 (130)
Q Consensus 102 i----n~~~a~~LP~~Cgv~ 117 (130)
- ...+|..||..||++
T Consensus 78 ~q~~~~~q~A~~LP~~C~i~ 97 (103)
T 1s6d_A 78 RMRDQVMSMAHNLPIECNLM 97 (103)
T ss_dssp STHHHHHHHHHHHHHHTTSS
T ss_pred hhHHHHHHHHHhcHHhcCCC
Confidence 1 245688899999996
No 16
>2ds2_B Sweet protein mabinlin-2 chain B; plant protein, SEED storage protein; 1.70A {Capparis masaikai}
Probab=67.02 E-value=0.94 Score=28.43 Aligned_cols=43 Identities=30% Similarity=0.672 Sum_probs=28.5
Q ss_pred cccccchhhhhhcCCCccccccccee--eccchh------c-cC----CCCHHHHhhcccccCCCC
Q 044686 66 RACCTGVEYLKDNTPTTADRQAACKC--IKDAAT------R-YR----GIKLDKARQLPKECGVDI 118 (130)
Q Consensus 66 ~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~------~-~~----~in~~~a~~LP~~Cgv~~ 118 (130)
..||+.++.+. .-|.| ++..+. . +. .=...+|..||..||+..
T Consensus 8 qqCC~eL~~~~----------~~CrC~aL~~~~~~~~qqgq~~~~qq~~~~~q~a~~LP~~C~l~~ 63 (72)
T 2ds2_B 8 RQCCNQLRQVD----------RPCVCPVLRQAAQQVLQRQIIQGPQQLRRLFDAARNLPNICNIPN 63 (72)
T ss_dssp HHHHHHHTTSC----------GGGHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHhcC----------ccccCHHHHHHHHHHHHhhhhhchHHHHHHHHHHHhhHHhcCCCC
Confidence 57999999873 46888 554331 1 10 112567888999999963
No 17
>1psy_A 2S albumin, RICC3; albumin SEED protein, SEED storage protein, plant protein; NMR {Ricinus communis} SCOP: a.52.1.3
Probab=64.99 E-value=1.2 Score=30.91 Aligned_cols=70 Identities=29% Similarity=0.578 Sum_probs=43.8
Q ss_pred cCccccc--cCcccchhhhcC--C-CC--------C-----------ccccccchhhhhhcCCCccccccccee--eccc
Q 044686 42 ITCGQVD--SFLAPCLAYLTG--E-AK--------P-----------SRACCTGVEYLKDNTPTTADRQAACKC--IKDA 95 (130)
Q Consensus 42 ~~C~~~~--~~L~pCl~yl~g--~-~~--------P-----------s~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~ 95 (130)
..|...+ ..|.+|-.||.- . .. | -..||..++.+. ..|.| |+..
T Consensus 16 q~C~~e~qq~~L~~Cq~yv~qq~~~~~~~~~~~~~~~~e~~~qe~~~~qqCC~qL~~~~----------~~C~C~aL~~~ 85 (125)
T 1psy_A 16 QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVR----------DECQCEAIKYI 85 (125)
T ss_dssp SSHHHHHTTSTTSSHHHHHHSSSCCCCSCSCCCCSSCSSSCSSSCHHHHHHHHHHTTCC----------SSHHHHHHHHH
T ss_pred cccHHHHHHhhHHHHHHHHHHHHhcccCcchhhhcchhhcccccHHHHHHHHHHHHhcC----------cccccHHHHHH
Confidence 3576554 469999999974 1 11 2 146999999873 46888 6554
Q ss_pred hh------ccCCCC----HHHHhhcccccCCCCCCC
Q 044686 96 AT------RYRGIK----LDKARQLPKECGVDIGVP 121 (130)
Q Consensus 96 ~~------~~~~in----~~~a~~LP~~Cgv~~p~~ 121 (130)
+. .+.+=. ..+|..||..||+.-+|+
T Consensus 86 v~~~~qQgq~~gqq~~~~~q~A~~LP~~C~i~C~~~ 121 (125)
T 1psy_A 86 AEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQ 121 (125)
T ss_dssp HHHHHHHTTCCTTCSHHHHHHHHHHHHHHTCSTTTS
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhHHHcCCcCCCC
Confidence 41 111111 456888999999933443
No 18
>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3
Probab=64.53 E-value=0.73 Score=29.08 Aligned_cols=46 Identities=24% Similarity=0.485 Sum_probs=30.0
Q ss_pred CccccccchhhhhhcCCCccccccccee--eccchh------ccCCC----CHHHHhhcccccCCCCC
Q 044686 64 PSRACCTGVEYLKDNTPTTADRQAACKC--IKDAAT------RYRGI----KLDKARQLPKECGVDIG 119 (130)
Q Consensus 64 Ps~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~------~~~~i----n~~~a~~LP~~Cgv~~p 119 (130)
.-..||.-++.+. .-|.| ++..+. .+++= ...+|..||..||+..+
T Consensus 10 ~~qqCC~qL~~~~----------~~CrC~aL~~~~~~~~~qgq~~~~q~~~~~q~a~~LP~~Cnl~~~ 67 (75)
T 1pnb_B 10 LREQCCNELYQED----------QVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI 67 (75)
T ss_dssp CTHHHHHHHHTSC----------GGGSHHHHHHHHHHHHSGGGCSSCCHHHHHHHCCSCSCSSCCTTT
T ss_pred HHHHHHHHHHhCC----------cccccHHHHHHHHHHHHHcccchHHHHHHHHHHHhhHHhcCCCCC
Confidence 4468999999973 46888 544331 13211 24567789999999744
No 19
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=40.13 E-value=35 Score=20.02 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=18.6
Q ss_pred cccCchHHHHhHHHHHHHHHHHHHHHHhh
Q 044686 7 HLQNPRASLENMKAGVVLAVILMAAIVMV 35 (130)
Q Consensus 7 ~~~~~~~~~~~m~~~~~~~~~ll~~ml~~ 35 (130)
.+-||||.+--....++++++++=+++.+
T Consensus 6 l~fDPrr~Lva~~~fl~vlAl~IHfilLS 34 (52)
T 1xrd_A 6 QLFDPRQALVGLATFLFVLALLIHFILLS 34 (52)
T ss_dssp GTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35699998877766666666655334443
No 20
>2lvf_A 2S albumin; allergen, copper binding, hydrophobic interaction; NMR {Bertholletia excelsa}
Probab=31.45 E-value=21 Score=23.93 Aligned_cols=59 Identities=20% Similarity=0.612 Sum_probs=37.4
Q ss_pred CcccchhhhcC----CC---CCc-------cccccchhhhhhcCCCccccccccee--eccchh----ccCCCC------
Q 044686 50 FLAPCLAYLTG----EA---KPS-------RACCTGVEYLKDNTPTTADRQAACKC--IKDAAT----RYRGIK------ 103 (130)
Q Consensus 50 ~L~pCl~yl~g----~~---~Ps-------~~CC~~v~~l~~~a~t~~dr~~~C~C--l~~~~~----~~~~in------ 103 (130)
.|..|..||.- +. .+. ..||+.|+.+. ..|.| |+..+. .+..+-
T Consensus 17 ~L~~Cq~yv~qq~~~~~~~~~~~~~~~~~l~~CC~qL~qv~----------~~CrC~aL~~~v~~~~qq~~~~~~~~~~~ 86 (114)
T 2lvf_A 17 MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMD----------ESCRCEGLRMMMRMMQQKEMQPRGEQMRR 86 (114)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCCSSSCCHHHHHHHHHHHHSC----------HHHHHHHHHHHHHHHHHHHCCCCSHHHHH
T ss_pred hHHHHHHHHHHHHhccCCccccccchHHHHHHHHHHHHHCC----------cCccCHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 58899999862 11 111 24999999983 36888 544332 111111
Q ss_pred -HHHHhhcccccCCCC
Q 044686 104 -LDKARQLPKECGVDI 118 (130)
Q Consensus 104 -~~~a~~LP~~Cgv~~ 118 (130)
+.+|..||..||+.-
T Consensus 87 ~~q~A~~LP~~C~i~p 102 (114)
T 2lvf_A 87 MMRLAENIPSRCNLSP 102 (114)
T ss_dssp HHHHHHHHHHHHCCCC
T ss_pred HHHHHHhChHhcCCCc
Confidence 457889999999973
No 21
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=28.41 E-value=20 Score=19.31 Aligned_cols=20 Identities=30% Similarity=0.664 Sum_probs=11.9
Q ss_pred chhhhcC-CCCCccccccchh
Q 044686 54 CLAYLTG-EAKPSRACCTGVE 73 (130)
Q Consensus 54 Cl~yl~g-~~~Ps~~CC~~v~ 73 (130)
|+|+=.- ..--.+.||+|++
T Consensus 3 Clp~n~fCn~~sGPrCCsgl~ 23 (36)
T 2e2s_A 3 CLPHNRFCNALSGPRCCSGLK 23 (36)
T ss_dssp SBCTTSCCCSSSSCCBCTTCC
T ss_pred ccCCCCCcccccCCcccCCCc
Confidence 5554433 2334567999975
No 22
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=20.16 E-value=1.5e+02 Score=17.52 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=19.2
Q ss_pred ccCchHHHHhHHHHHHHHHHHHHHHHhh
Q 044686 8 LQNPRASLENMKAGVVLAVILMAAIVMV 35 (130)
Q Consensus 8 ~~~~~~~~~~m~~~~~~~~~ll~~ml~~ 35 (130)
+-|||+.+--....+.++++++=+++.+
T Consensus 12 vvdP~~~L~~l~~~v~vlAllIH~~lLs 39 (56)
T 1lgh_A 12 VINPSTWLPVIWIVATVVAIAVHAAVLA 39 (56)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCceeHHHHHHHHHHHHHHHHHHHHc
Confidence 4589998887777777777766444443
Done!