BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044687
LILDFLDEVVRKPTVLIGIGDDWRIKLLFPLLWFIDFLLKQRPIADAIFEDVKQREPAND
EGALDAFVSIVTGPSGPNPVQLMPSISIPVLVLWGDEDPFTPLDRPVGRYL

High Scoring Gene Products

Symbol, full name Information P value
AT5G38520 protein from Arabidopsis thaliana 5.1e-24
AT5G19850 protein from Arabidopsis thaliana 8.3e-07

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044687
        (111 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2159823 - symbol:AT5G38520 species:3702 "Arabi...   223  5.1e-24   2
TAIR|locus:2832896 - symbol:AT5G19850 species:3702 "Arabi...   120  8.3e-07   1


>TAIR|locus:2159823 [details] [associations]
            symbol:AT5G38520 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016787 "hydrolase
            activity" evidence=ISS] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
            [GO:0006364 "rRNA processing" evidence=RCA] [GO:0009657 "plastid
            organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] [GO:0010264 "myo-inositol hexakisphosphate
            biosynthetic process" evidence=RCA] [GO:0019761 "glucosinolate
            biosynthetic process" evidence=RCA] [GO:0043085 "positive
            regulation of catalytic activity" evidence=RCA] EMBL:CP002688
            GO:GO:0009941 GO:GO:0016787 GO:GO:0009534 IPI:IPI00846134
            RefSeq:NP_001078682.1 UniGene:At.20746 ProteinModelPortal:F4KBJ3
            SMR:F4KBJ3 PRIDE:F4KBJ3 EnsemblPlants:AT5G38520.2 GeneID:833840
            KEGG:ath:AT5G38520 OMA:TPILLIW Uniprot:F4KBJ3
        Length = 374

 Score = 223 (83.6 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
 Identities = 40/54 (74%), Positives = 47/54 (87%)

Query:    57 PANDEGALDAFVSIVTGPSGPNPVQLMPSISIPVLVLWGDEDPFTPLDRPVGRY 110
             PAN EGALDAFVSI+TGP GPNP++L+P I+ PVLVLWGD+D  TPLD PVG+Y
Sbjct:   276 PANTEGALDAFVSILTGPPGPNPIKLIPEITKPVLVLWGDQDGLTPLDGPVGKY 329

 Score = 139 (54.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 33/64 (51%), Positives = 37/64 (57%)

Query:    21 DDWRIKLLFPLLWFIDFLLKQRPIADAIFEDVKQREP---------ANDEGALDAFVSIV 71
             DDWRIKLL PLL  IDFLLKQR IA A+F  VK RE           N +   D  V I+
Sbjct:   214 DDWRIKLLMPLLLLIDFLLKQRGIASALFNRVKDRENLKNILTNVYGNKDNVDDTLVEII 273

Query:    72 TGPS 75
              GP+
Sbjct:   274 AGPA 277

 Score = 73 (30.8 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
 Identities = 14/18 (77%), Positives = 18/18 (100%)

Query:     1 LILDFLDEVVRKPTVLIG 18
             LIL+FL+EVV+KPT+LIG
Sbjct:   146 LILNFLEEVVQKPTILIG 163


>TAIR|locus:2832896 [details] [associations]
            symbol:AT5G19850 species:3702 "Arabidopsis thaliana"
            [GO:0005737 "cytoplasm" evidence=ISM] [GO:0016787 "hydrolase
            activity" evidence=ISS] InterPro:IPR000073 EMBL:CP002688
            GO:GO:0016787 PRINTS:PR00111 IPI:IPI00529562 RefSeq:NP_568381.1
            UniGene:At.31247 UniGene:At.66697 ProteinModelPortal:F4K2M9
            SMR:F4K2M9 PRIDE:F4K2M9 EnsemblPlants:AT5G19850.1 GeneID:832105
            KEGG:ath:AT5G19850 OMA:YTFETWG Uniprot:F4K2M9
        Length = 359

 Score = 120 (47.3 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query:    44 IADAIFEDVKQREPANDEGALDAFVSIVTGPSGPNPVQLMPSISIPVLVLWGDEDPFTPL 103
             + D + E + +  P  + GA+D F+  +    GP P  L+P +  PVL+ WG++DP+ P+
Sbjct:   258 VTDELVEAILR--PGLEPGAVDVFLEFICYSGGPLPEDLLPLVKCPVLIAWGEKDPWEPI 315

Query:   104 DRPVGR 109
             +  +GR
Sbjct:   316 E--LGR 319


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.148   0.468    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      111       111   0.00091  102 3  11 22  0.44    30
                                                     29  0.42    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  119 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.65u 0.09s 12.74t   Elapsed:  00:00:02
  Total cpu time:  12.66u 0.09s 12.75t   Elapsed:  00:00:03
  Start:  Fri May 10 05:59:04 2013   End:  Fri May 10 05:59:07 2013

Back to top