BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044687
(111 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 23/105 (21%)
Query: 6 LDEVVRKPTVLIGIGDDWRIKLLFPLLWFIDFLLKQRPIADAIFEDVKQREPANDEGALD 65
L+++ R+PT+ +KL+ + F+ + DA+FE + + L+
Sbjct: 159 LNQLYRQPTIE-------NLKLMMDI-----FVFDTSDLTDALFE-ARLNNMLSRRDHLE 205
Query: 66 AFVSIVTGPSGPNPVQL------MPSISIPVLVLWGDEDPFTPLD 104
FV + NP Q + I L++WG D F P+D
Sbjct: 206 NFVKSLE----ANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMD 246
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 28.1 bits (61), Expect = 1.1, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 27 LLFPL-LWFIDFLLKQRPIADAIFEDVKQREPANDEGALDAFVSIVTGPSGP 77
L FPL + L+ +RP ADAIF + + P G + +++ P+ P
Sbjct: 244 LTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLP 295
>pdb|3PS0|A Chain A, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
pdb|3PS0|B Chain B, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
pdb|3PS0|C Chain C, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
pdb|3PS0|D Chain D, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
Length = 328
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 50 EDVKQREPANDEGALDAFVSIVTGPSGPNPVQLMPSISIPVLVLWGDEDPFTP 102
E++++++ + A+ A S+++G G + +PS+ + LV+ + PF P
Sbjct: 216 EELERQKAKRVKSAIKALYSLLSGNFGGKRSRFLPSMKLMSLVVTKTDFPFMP 268
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 74 PSGPNPVQLMPSISIPVLVLWGDEDPFTP 102
P G L+P + P L++ G++DP P
Sbjct: 183 PDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 74 PSGPNPVQLMPSISIPVLVLWGDEDPFTP 102
P G L+P + P L++ G++DP P
Sbjct: 183 PDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 74 PSGPNPVQLMPSISIPVLVLWGDEDPFTP 102
P G L+P + P L++ G++DP P
Sbjct: 183 PDGNICRHLLPRVQCPALIVHGEKDPLVP 211
>pdb|1QLW|A Chain A, The Atomic Resolution Structure Of A Novel Bacterial
Esterase
pdb|1QLW|B Chain B, The Atomic Resolution Structure Of A Novel Bacterial
Esterase
pdb|2WKW|A Chain A, Alcaligenes Esterase Complexed With Product Analogue
pdb|2WKW|B Chain B, Alcaligenes Esterase Complexed With Product Analogue
Length = 328
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 54 QREPANDEGALDAFVSIVTGPSGPNPVQLMPSISIPVLVLWGDE 97
Q N +G + A VS+ G P P + P SIPVLV++GD
Sbjct: 214 QTAAMNPKG-ITAIVSVEPGEC-PKPEDVKPLTSIPVLVVFGDH 255
>pdb|2F6K|A Chain A, Crystal Structure Of Amidohydrorolase Ii; Northeast
Structural Genomics Target Lpr24
pdb|2F6K|B Chain B, Crystal Structure Of Amidohydrorolase Ii; Northeast
Structural Genomics Target Lpr24
Length = 307
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 71 VTGPSGPNPVQLMPSISIPVLVLWGDEDPFTPLD--RPVGRYL 111
V G P + + S++ P +L+G + P+TPLD R +G L
Sbjct: 240 VAGAVLPRQLPTLXSLAQPEHLLYGSDIPYTPLDGSRQLGHAL 282
>pdb|2WUD|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUD|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis
pdb|2WUE|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUE|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopoda
pdb|2WUF|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUF|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With 4,9dsha
pdb|2WUG|A Chain A, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
pdb|2WUG|B Chain B, Crystal Structure Of S114a Mutant Of Hsad From
Mycobacterium Tuberculosis In Complex With Hopda
Length = 291
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 89 PVLVLWGDEDPFTPLD 104
PVL++WG ED PLD
Sbjct: 232 PVLLIWGREDRVNPLD 247
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 89 PVLVLWGDEDPFTPLD 104
PVL++WG ED PLD
Sbjct: 252 PVLLIWGREDRVNPLD 267
>pdb|3TOV|A Chain A, The Crystal Structure Of The Glycosyl Transferase Family 9
From Veillonella Parvula Dsm 2008
pdb|3TOV|B Chain B, The Crystal Structure Of The Glycosyl Transferase Family 9
From Veillonella Parvula Dsm 2008
Length = 349
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 70 IVTGPSGPNPVQLMPSISIPVLVLWGDEDPF 100
++T SGP V + S +P++ L+G +PF
Sbjct: 265 LITNDSGPXHVGI--SQGVPIVALYGPSNPF 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.148 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,715,525
Number of Sequences: 62578
Number of extensions: 148520
Number of successful extensions: 314
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 13
length of query: 111
length of database: 14,973,337
effective HSP length: 75
effective length of query: 36
effective length of database: 10,279,987
effective search space: 370079532
effective search space used: 370079532
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)