Query 044689
Match_columns 253
No_of_seqs 161 out of 1083
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00193 expansin-A; Provision 100.0 2.1E-64 4.6E-69 446.4 23.8 217 21-251 26-256 (256)
2 PLN03023 Expansin-like B1; Pro 100.0 6.9E-64 1.5E-68 441.0 25.2 223 21-252 21-247 (247)
3 PLN00050 expansin A; Provision 100.0 1.9E-63 4.2E-68 438.6 24.7 215 22-251 22-247 (247)
4 COG4305 Endoglucanase C-termin 100.0 4.7E-29 1E-33 206.5 19.2 200 21-252 26-231 (232)
5 PLN03024 Putative EG45-like do 99.9 1.5E-26 3.3E-31 185.3 11.3 103 22-145 18-125 (125)
6 PLN00115 pollen allergen group 99.9 9.7E-26 2.1E-30 178.5 11.7 93 153-251 24-118 (118)
7 PF01357 Pollen_allerg_1: Poll 99.9 6.2E-24 1.3E-28 158.8 9.9 80 155-236 1-82 (82)
8 smart00837 DPBB_1 Rare lipopro 99.9 1.9E-23 4E-28 157.8 7.0 76 61-143 1-87 (87)
9 PF03330 DPBB_1: Rare lipoprot 99.8 3.2E-19 6.9E-24 131.8 6.9 72 61-143 1-78 (78)
10 PF00967 Barwin: Barwin family 99.1 1.2E-10 2.7E-15 90.8 5.2 64 71-148 56-119 (119)
11 PF07249 Cerato-platanin: Cera 98.2 1E-05 2.2E-10 64.4 9.1 74 55-147 39-113 (119)
12 TIGR00413 rlpA rare lipoprotei 97.8 0.00035 7.6E-09 60.5 11.3 95 28-151 1-96 (208)
13 COG0797 RlpA Lipoproteins [Cel 97.0 0.0034 7.3E-08 55.4 7.8 59 76-149 120-178 (233)
14 PRK10672 rare lipoprotein A; P 96.7 0.023 4.9E-07 53.3 11.7 93 26-146 79-171 (361)
15 PF02015 Glyco_hydro_45: Glyco 93.3 0.11 2.4E-06 44.9 4.1 54 61-119 70-123 (201)
16 PF12863 DUF3821: Domain of un 66.0 49 0.0011 29.0 8.7 98 112-231 48-146 (209)
17 PF03404 Mo-co_dimer: Mo-co ox 60.5 15 0.00032 29.6 4.2 21 178-198 39-61 (131)
18 TIGR02588 conserved hypothetic 59.8 52 0.0011 26.4 7.0 57 164-222 49-118 (122)
19 cd02110 SO_family_Moco_dimer S 48.1 34 0.00073 31.6 5.0 48 179-228 236-293 (317)
20 cd02854 Glycogen_branching_enz 45.4 53 0.0012 24.9 4.9 50 181-231 16-77 (99)
21 cd02859 AMPKbeta_GBD_like AMP- 36.0 1.5E+02 0.0032 21.3 5.9 49 180-232 11-62 (79)
22 PF10417 1-cysPrx_C: C-termina 30.4 29 0.00064 22.1 1.1 11 234-244 11-21 (40)
23 COG2372 CopC Uncharacterized p 30.2 91 0.002 25.2 4.1 28 134-161 97-126 (127)
24 cd02113 bact_SoxC_Moco bacteri 28.6 88 0.0019 29.2 4.4 29 170-198 227-258 (326)
25 cd02114 bact_SorA_Moco sulfite 28.5 1.1E+02 0.0025 28.9 5.2 49 178-227 287-344 (367)
26 PF08290 Hep_core_N: Hepatitis 27.8 35 0.00075 20.0 1.0 12 2-13 6-17 (27)
27 PRK10301 hypothetical protein; 27.6 96 0.0021 24.6 3.9 26 134-160 96-124 (124)
28 cd02855 Glycogen_branching_enz 27.4 2.2E+02 0.0047 20.9 5.7 37 194-231 49-87 (106)
29 cd02861 E_set_proteins_like E 27.3 1.7E+02 0.0037 20.9 4.9 45 182-229 14-60 (82)
30 PRK13159 cytochrome c-type bio 25.7 78 0.0017 26.5 3.1 29 215-244 73-102 (155)
31 PRK10564 maltose regulon perip 25.4 1.8E+02 0.0038 27.0 5.7 80 140-252 47-128 (303)
32 PF04234 CopC: CopC domain; I 22.8 95 0.0021 23.2 2.9 26 134-160 69-97 (97)
33 PF02922 CBM_48: Carbohydrate- 21.8 2.1E+02 0.0045 20.1 4.5 50 181-231 22-80 (85)
34 PF03100 CcmE: CcmE; InterPro 20.2 1.2E+02 0.0025 24.3 3.1 32 213-245 70-102 (131)
35 PRK13254 cytochrome c-type bio 20.0 1.3E+02 0.0028 24.8 3.4 30 214-244 71-101 (148)
No 1
>PLN00193 expansin-A; Provisional
Probab=100.00 E-value=2.1e-64 Score=446.37 Aligned_cols=217 Identities=33% Similarity=0.723 Sum_probs=201.1
Q ss_pred CCCCeeEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCcCCCcEEEEEEC---CCCCCC-CCcEEE
Q 044689 21 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCT---RHPACS-GRAVRV 96 (253)
Q Consensus 21 ~~~~~~~G~aT~Y~~~~~~~~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~---~~~~C~-~~~v~v 96 (253)
+.++|.+++||||+++|+.++++|||||++ +...+++.++||+|+++|++|+.||+||||+|. +++.|. +++|+|
T Consensus 26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~V 104 (256)
T PLN00193 26 TPSGWTKAHATFYGGSDASGTMGGACGYGN-LYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTI 104 (256)
T ss_pred CCCCceeeEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEE
Confidence 566899999999999999889999999998 567889999999999999999999999999994 566786 459999
Q ss_pred EEeecCCCC---------CCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecCCCCcceEEEEccCCCCce
Q 044689 97 VITDFCPGG---------PCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNY 167 (253)
Q Consensus 97 ~V~D~Cp~~---------~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~GSs~~w 167 (253)
+|||+||.+ ||.+++.|||||..||.+||. ++.|+++|+||||+|+++| +|+|+++ +++||
T Consensus 105 t~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~--gn~y~ 174 (256)
T PLN00193 105 TATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTIN--GRDYF 174 (256)
T ss_pred EEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEc--CCccE
Confidence 999999962 898889999999999999998 6899999999999999998 8999999 48999
Q ss_pred eEEEEEEecCCCCeeEEEEEccCCceEEccccCcceeEeCCCCCCCC-CeEEEEEEeeCCeEEEEcccccCCCCCCcEEe
Q 044689 168 LAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHP-PLSLRLTSQYSSQTLVANNVIPQGWMPGATYR 246 (253)
Q Consensus 168 ~av~v~n~~g~g~I~sVev~~~~~~w~~m~r~~g~~W~~~~~~~~~~-p~~~RvT~~~~G~~iv~~~vip~~~~~G~~y~ 246 (253)
++|+|.|++|.++|++|+|++++++|++|+|+||++|+++.. +.+ ||+||||+ .+|+++++.||||++|++|++|+
T Consensus 175 ~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~--l~g~plsfRvts-~~G~~~~~~~viPa~W~~G~ty~ 251 (256)
T PLN00193 175 ELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAY--LDGQSLSFKVTT-TDGQTRFFLNVVPANWGFGQTFS 251 (256)
T ss_pred EEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCC--CCCCCEEEEEEE-cCCeEEEECceeCCCCCCCCeEe
Confidence 999999999999999999999867899999999999999873 565 99999999 99999999999999999999999
Q ss_pred cCccc
Q 044689 247 SLVNY 251 (253)
Q Consensus 247 t~~qf 251 (253)
+.+||
T Consensus 252 s~vqf 256 (256)
T PLN00193 252 SSVQF 256 (256)
T ss_pred cCccC
Confidence 99998
No 2
>PLN03023 Expansin-like B1; Provisional
Probab=100.00 E-value=6.9e-64 Score=441.04 Aligned_cols=223 Identities=36% Similarity=0.742 Sum_probs=205.1
Q ss_pred CCCCeeEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCcCCCcEEEEEECCCCCCCCCcEEEEEee
Q 044689 21 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITD 100 (253)
Q Consensus 21 ~~~~~~~G~aT~Y~~~~~~~~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~~v~v~V~D 100 (253)
..++|.+++|||||++++.|+++|||||++ +....++.++||++ ++|++|++||+||||+|.+++.|++++|+|+|||
T Consensus 21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~-~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd 98 (247)
T PLN03023 21 KSQDFTYSRATYYGSPDCLGTPTGACGFGE-YGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTD 98 (247)
T ss_pred hcCCcccceEEEeCCCCCCCCCCccccCCc-cccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEe
Confidence 455799999999999999999999999999 67777888999998 9999999999999999998889998899999999
Q ss_pred cCCCCCCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecCCCCcceEEEEccCCC-CceeEEEEEEecCCC
Q 044689 101 FCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSN-PNYLAVVVEFEDGDG 179 (253)
Q Consensus 101 ~Cp~~~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~GSs-~~w~av~v~n~~g~g 179 (253)
.||. + +.|||||.+||.+||.|+++.+|+..|+++|+||||||.++|.+|+|+|+++|+ ++|++|+|.|++|.+
T Consensus 99 ~~~~--~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~G 173 (247)
T PLN03023 99 YGEG--D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQN 173 (247)
T ss_pred CCCC--C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCc
Confidence 9985 3 589999999999999999999999999999999999999998789999999996 999999999999999
Q ss_pred CeeEEEEEcc-CCceEEccccCcceeEeCCCCCCCCCeEEEEEEe-eCCe-EEEEcccccCCCCCCcEEecCcccc
Q 044689 180 DLAGVDVKEG-SGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQ-YSSQ-TLVANNVIPQGWMPGATYRSLVNYN 252 (253)
Q Consensus 180 ~I~sVev~~~-~~~w~~m~r~~g~~W~~~~~~~~~~p~~~RvT~~-~~G~-~iv~~~vip~~~~~G~~y~t~~qf~ 252 (253)
+|++||||++ +.+|++|+|+||++|+++. +|++||+||++.. .+++ +|++.||||++|++|++|++++||.
T Consensus 174 dI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~--~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq~~ 247 (247)
T PLN03023 174 DILAVEIWQEDCKEWRGMRKAYGAVWDMPN--PPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQLD 247 (247)
T ss_pred cEEEEEEEecCCCCceECccCCcceeEcCC--CCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecccccC
Confidence 9999999996 6799999999999999976 5899888888651 3665 4889999999999999999999994
No 3
>PLN00050 expansin A; Provisional
Probab=100.00 E-value=1.9e-63 Score=438.61 Aligned_cols=215 Identities=35% Similarity=0.786 Sum_probs=199.1
Q ss_pred CCCeeEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCcCCCcEEEEEECCC-CCCCCCcEEEEEee
Q 044689 22 GTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRH-PACSGRAVRVVITD 100 (253)
Q Consensus 22 ~~~~~~G~aT~Y~~~~~~~~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~-~~C~~~~v~v~V~D 100 (253)
..+|.+++|||||++++.++++|||||++ +...+++.++||+|+.+|++|+.||+||||+|.+. ..|.+++|+|+|||
T Consensus 22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~itd 100 (247)
T PLN00050 22 GSGWTGAHATFYGGGDASGTMGGACGYGN-LYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITATN 100 (247)
T ss_pred CCCccccEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEec
Confidence 45899999999999999999999999999 56678999999999999999999999999999653 46988899999999
Q ss_pred cCCC---------CCCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecCCCCcceEEEEccCCCCceeEEE
Q 044689 101 FCPG---------GPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVV 171 (253)
Q Consensus 101 ~Cp~---------~~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~GSs~~w~av~ 171 (253)
+||+ +||.+++.|||||..||.+||. ++.|+++|+||||+|+++| ||+|+++++ +||++|+
T Consensus 101 ~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g~--sy~~~vl 170 (247)
T PLN00050 101 FCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTINGH--SYFNLVL 170 (247)
T ss_pred CCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcCC--ceeEEEE
Confidence 9996 2898889999999999999998 6899999999999999998 999999954 4999999
Q ss_pred EEEecCCCCeeEEEEEccCCceEEccccCcceeEeCCCCCCCC-CeEEEEEEeeCCeEEEEcccccCCCCCCcEEecCcc
Q 044689 172 VEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHP-PLSLRLTSQYSSQTLVANNVIPQGWMPGATYRSLVN 250 (253)
Q Consensus 172 v~n~~g~g~I~sVev~~~~~~w~~m~r~~g~~W~~~~~~~~~~-p~~~RvT~~~~G~~iv~~~vip~~~~~G~~y~t~~q 250 (253)
|.|++|.++|++|+|+++.++|++|+|+||++|+++.. +.+ ||+||||+ .+|+++++.||||++|++|++|++. |
T Consensus 171 v~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~--l~g~~lsfRvt~-~~G~~~~~~~V~Pa~W~~G~ty~~~-~ 246 (247)
T PLN00050 171 ITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSY--LNGQALSFKVTT-SDGRTVISNNAAPSNWAFGQTYTGM-Q 246 (247)
T ss_pred EEEcCCCccEEEEEEecCCCCeeECccccCceeEccCC--CCCCcEEEEEEe-cCCcEEEECceeCCCCCCCCeEecC-c
Confidence 99999999999999999766899999999999999874 555 99999999 9999999999999999999999995 8
Q ss_pred c
Q 044689 251 Y 251 (253)
Q Consensus 251 f 251 (253)
|
T Consensus 247 f 247 (247)
T PLN00050 247 F 247 (247)
T ss_pred C
Confidence 8
No 4
>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.7e-29 Score=206.54 Aligned_cols=200 Identities=22% Similarity=0.301 Sum_probs=165.2
Q ss_pred CCCCeeEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCC----cCCCcEEEEEECCCCCCCCCcEEE
Q 044689 21 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSG----KECGACYQVKCTRHPACSGRAVRV 96 (253)
Q Consensus 21 ~~~~~~~G~aT~Y~~~~~~~~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g----~~CG~C~~V~c~~~~~C~~~~v~v 96 (253)
+-++-++|.|||-+.. ..+||=- +++.+.+..+.|+|..+-+-| +.-|+.++|. +| +++++|
T Consensus 26 awd~~f~G~ATyTgsG----YsGGAfl----LDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GP----KG~TTV 91 (232)
T COG4305 26 AWDDLFEGYATYTGSG----YSGGAFL----LDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GP----KGKTTV 91 (232)
T ss_pred ccccccceeEEEeccc----ccCceEE----ecCcCCcceeeecCHHHcccCCchhhhccceEEEE--CC----CCceEE
Confidence 4566688999998864 3477763 345567889999998877764 7899999998 77 678899
Q ss_pred EEeecCCCCCCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecCCCCcceEEEEccCCCCceeEEEEEEec
Q 044689 97 VITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFED 176 (253)
Q Consensus 97 ~V~D~Cp~~~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~GSs~~w~av~v~n~~ 176 (253)
.|||+-|+ -+ ++.||||+.||.+|.+ +..|+++|+||.|+-|..| |+.+++|+||+.||.++||+||.
T Consensus 92 YVTDlYPe--ga--sGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs~WWAAIQVRnH~ 159 (232)
T COG4305 92 YVTDLYPE--GA--SGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGSSRWWAAIQVRNHK 159 (232)
T ss_pred EEeccccc--cc--ccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCCccceeeeeeeccc
Confidence 99999998 33 7999999999999998 7899999999999999999 99999999999999999999998
Q ss_pred CCCCeeEEEEEccCCceEEccccCcceeEeCCCCCCCCCeEEEEEEeeCCeEEEEc-ccccCCCCCC-cEEecCcccc
Q 044689 177 GDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVAN-NVIPQGWMPG-ATYRSLVNYN 252 (253)
Q Consensus 177 g~g~I~sVev~~~~~~w~~m~r~~g~~W~~~~~~~~~~p~~~RvT~~~~G~~iv~~-~vip~~~~~G-~~y~t~~qf~ 252 (253)
- ||.++|+.. ++.|..|...+||.|.-.. ...+||.+|+|+ +-|+.++.+ -.+|..-++- -+....+||+
T Consensus 160 y--PV~KlE~~q-dg~WinlpK~dYNhFVgT~--LG~~pL~~RmTD-IRG~~l~DtlP~Lpk~asSKaY~V~G~VQFs 231 (232)
T COG4305 160 Y--PVMKLEYEQ-DGKWINLPKMDYNHFVGTN--LGTGPLKVRMTD-IRGKVLKDTLPKLPKSASSKAYTVPGHVQFS 231 (232)
T ss_pred C--ceEEEEEec-CCeEeeccccccceeeccc--cCCCceEEEEee-cccceeecccccccccccCCceeecceeecC
Confidence 4 999999998 6899999999999987554 356899999999 999999875 2334322211 1345778885
No 5
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=99.94 E-value=1.5e-26 Score=185.27 Aligned_cols=103 Identities=35% Similarity=0.698 Sum_probs=87.4
Q ss_pred CCCeeEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCcCCCcEEEEEECCC-----CCCCCCcEEE
Q 044689 22 GTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRH-----PACSGRAVRV 96 (253)
Q Consensus 22 ~~~~~~G~aT~Y~~~~~~~~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~-----~~C~~~~v~v 96 (253)
.+...+|+||||+..+ .||| |++ .+++.++||+++.+|++|+.||+||||+|.++ ..|++++|+|
T Consensus 18 ~~~~~~G~AT~Y~~~~-----~gAC-~~~----~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V 87 (125)
T PLN03024 18 VSYATPGIATFYTSYT-----PSAC-YRG----TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTV 87 (125)
T ss_pred hhcccceEEEEeCCCC-----Cccc-cCC----CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCccccccccCCeEEE
Confidence 3445679999998643 6899 444 24788999999999999999999999999765 3688999999
Q ss_pred EEeecCCCCCCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEE
Q 044689 97 VITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYAR 145 (253)
Q Consensus 97 ~V~D~Cp~~~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~ 145 (253)
+|+|+||++ |. .|||||++||.+||+ .+.|+++|+|.+
T Consensus 88 ~VtD~CP~~-C~---~~~DLS~~AF~~iA~-------~~aG~v~V~y~~ 125 (125)
T PLN03024 88 KIVDHCPSG-CA---STLDLSREAFAQIAN-------PVAGIINIDYIP 125 (125)
T ss_pred EEEcCCCCC-CC---CceEcCHHHHHHhcC-------ccCCEEEEEEeC
Confidence 999999941 75 599999999999999 578999999974
No 6
>PLN00115 pollen allergen group 3; Provisional
Probab=99.93 E-value=9.7e-26 Score=178.50 Aligned_cols=93 Identities=26% Similarity=0.525 Sum_probs=85.9
Q ss_pred cceEEEEccCCCCceeEEEEEEecCCCCeeEEEEEcc-CCceE-EccccCcceeEeCCCCCCCCCeEEEEEEeeCCeEEE
Q 044689 153 RNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-SGEWR-AMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLV 230 (253)
Q Consensus 153 ~ni~~~v~~GSs~~w~av~v~n~~g~g~I~sVev~~~-~~~w~-~m~r~~g~~W~~~~~~~~~~p~~~RvT~~~~G~~iv 230 (253)
.+|+|+|++|||++||+|.+ | ++|.+|||+++ +.+|+ +|+|+||++|+++++.||+|||+||+|+ .+|++++
T Consensus 24 ~~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~-~~G~~~v 97 (118)
T PLN00115 24 TEVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV-KGGGYRV 97 (118)
T ss_pred CceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEE-eCCCEEE
Confidence 47999999999999998876 3 26999999998 56899 9999999999998765789999999999 9999999
Q ss_pred EcccccCCCCCCcEEecCccc
Q 044689 231 ANNVIPQGWMPGATYRSLVNY 251 (253)
Q Consensus 231 ~~~vip~~~~~G~~y~t~~qf 251 (253)
+.||||++|++|++|++++||
T Consensus 98 a~nViPa~Wk~G~tY~s~vq~ 118 (118)
T PLN00115 98 VDDVIPESFKAGSVYKTGIQV 118 (118)
T ss_pred ECceECCCCCCCCEEeccccC
Confidence 999999999999999999997
No 7
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=99.91 E-value=6.2e-24 Score=158.84 Aligned_cols=80 Identities=53% Similarity=0.924 Sum_probs=66.9
Q ss_pred eEEEEccCCCCceeEEEEEEecCCCCeeEEEEEcc-CCceEEccccCcceeEeCCCCCCCCCeEEEEEEeeC-CeEEEEc
Q 044689 155 IAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-SGEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYS-SQTLVAN 232 (253)
Q Consensus 155 i~~~v~~GSs~~w~av~v~n~~g~g~I~sVev~~~-~~~w~~m~r~~g~~W~~~~~~~~~~p~~~RvT~~~~-G~~iv~~ 232 (253)
|+|+|+++|++|||+|+|.|++|.++|++|||+++ +.+|++|+|+||++|++++ .++.+||+||||+ .+ |+++++.
T Consensus 1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~-~~~~~pls~Rvts-~~~G~~vv~~ 78 (82)
T PF01357_consen 1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDS-NPPGGPLSFRVTS-GDSGQTVVAD 78 (82)
T ss_dssp EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE--SS--SSEEEEEEE-TTTSEEEEEE
T ss_pred CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECC-CCcCCCEEEEEEE-cCCCeEEEEe
Confidence 68999999999999999999999999999999987 5679999999999999986 4788999999999 67 9999999
Q ss_pred cccc
Q 044689 233 NVIP 236 (253)
Q Consensus 233 ~vip 236 (253)
||||
T Consensus 79 nViP 82 (82)
T PF01357_consen 79 NVIP 82 (82)
T ss_dssp EEE-
T ss_pred cccC
Confidence 9998
No 8
>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel. Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.
Probab=99.89 E-value=1.9e-23 Score=157.79 Aligned_cols=76 Identities=37% Similarity=0.801 Sum_probs=68.4
Q ss_pred EEEeCccccCCCcCCCcEEEEEEC-CCCCCCC-CcEEEEEeecCCCC---------CCCCCCCcEEcChHHHhhccCCCc
Q 044689 61 VTAIGPSLYKSGKECGACYQVKCT-RHPACSG-RAVRVVITDFCPGG---------PCVSESAHFDLSGTAFGAMAIPGQ 129 (253)
Q Consensus 61 ~aA~s~~~~~~g~~CG~C~~V~c~-~~~~C~~-~~v~v~V~D~Cp~~---------~C~~~~~~~DLs~~AF~~ia~~~~ 129 (253)
+||+|+.+|++|++||+||||+|. +++.|.+ ++|+|+|||+||++ ||.+++.|||||..||.+||+
T Consensus 1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~--- 77 (87)
T smart00837 1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ--- 77 (87)
T ss_pred CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence 479999999999999999999996 4667874 59999999999973 898778999999999999999
Q ss_pred ccccccCCeEEEEE
Q 044689 130 EEKLRDAGVLEVRY 143 (253)
Q Consensus 130 ~~~~~~~G~~~i~w 143 (253)
++.|+|+|+|
T Consensus 78 ----~~~Gvi~v~y 87 (87)
T smart00837 78 ----YKAGIVPVKY 87 (87)
T ss_pred ----hcCCEEeeEC
Confidence 6899999987
No 9
>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures. They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.
Probab=99.78 E-value=3.2e-19 Score=131.80 Aligned_cols=72 Identities=43% Similarity=0.855 Sum_probs=61.2
Q ss_pred EEEeCccccCCCcCCCcEEEEEEC--CCCC--CCC--CcEEEEEeecCCCCCCCCCCCcEEcChHHHhhccCCCcccccc
Q 044689 61 VTAIGPSLYKSGKECGACYQVKCT--RHPA--CSG--RAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLR 134 (253)
Q Consensus 61 ~aA~s~~~~~~g~~CG~C~~V~c~--~~~~--C~~--~~v~v~V~D~Cp~~~C~~~~~~~DLs~~AF~~ia~~~~~~~~~ 134 (253)
+||++..+|++|.+||+||+++|. .... |.. ++|+|+|+|+||+ |. ..|||||+.||++|+. .
T Consensus 1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~--~~--~~~lDLS~~aF~~la~-------~ 69 (78)
T PF03330_consen 1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG--CP--PNHLDLSPAAFKALAD-------P 69 (78)
T ss_dssp EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT--SS--SSEEEEEHHHHHHTBS-------T
T ss_pred CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC--Cc--CCEEEeCHHHHHHhCC-------C
Confidence 589999999999999999999993 2333 765 9999999999999 88 7999999999999998 5
Q ss_pred cCCeEEEEE
Q 044689 135 DAGVLEVRY 143 (253)
Q Consensus 135 ~~G~~~i~w 143 (253)
+.|+++|+|
T Consensus 70 ~~G~i~V~w 78 (78)
T PF03330_consen 70 DAGVIPVEW 78 (78)
T ss_dssp TCSSEEEEE
T ss_pred CceEEEEEC
Confidence 899999999
No 10
>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds. It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.
Probab=99.09 E-value=1.2e-10 Score=90.80 Aligned_cols=64 Identities=36% Similarity=0.618 Sum_probs=45.8
Q ss_pred CCcCCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEec
Q 044689 71 SGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVAC 148 (253)
Q Consensus 71 ~g~~CG~C~~V~c~~~~~C~~~~v~v~V~D~Cp~~~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C 148 (253)
+-..||+|++||-+. ++.+++|+|+|+|+. ++|||.+.+|++|-..|+. ...|.+.|.|++|+|
T Consensus 56 gq~~CGkClrVTNt~----tga~~~~RIVDqCsn-------GGLDld~~vF~~iDtdG~G---~~~Ghl~V~y~fV~C 119 (119)
T PF00967_consen 56 GQDSCGKCLRVTNTA----TGAQVTVRIVDQCSN-------GGLDLDPTVFNQIDTDGQG---YAQGHLIVDYEFVDC 119 (119)
T ss_dssp SGGGTT-EEEEE-TT----T--EEEEEEEEE-SS-------SSEES-SSSHHHH-SSSHH---HHHTEEEEEEEEE--
T ss_pred CcccccceEEEEecC----CCcEEEEEEEEcCCC-------CCcccChhHHhhhccCCcc---cccceEEEEEEEEcC
Confidence 347899999999443 378999999999875 5899999999999654432 578999999999998
No 11
>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family. It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.
Probab=98.21 E-value=1e-05 Score=64.42 Aligned_cols=74 Identities=20% Similarity=0.464 Sum_probs=51.0
Q ss_pred CCCCCeEEEeCc-cccCCCcCCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhccCCCccccc
Q 044689 55 SPFSSFVTAIGP-SLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKL 133 (253)
Q Consensus 55 ~p~~~~~aA~s~-~~~~~g~~CG~C~~V~c~~~~~C~~~~v~v~V~D~Cp~~~C~~~~~~~DLs~~AF~~ia~~~~~~~~ 133 (253)
.|.-.+|.+... .-| ++..||.|+|++-. ++++.|..+|.=+ +.|+|+.+||+.|.+. +.
T Consensus 39 lp~Fp~IGg~~~V~gW-nS~~CGtC~~lty~------g~si~vlaID~a~--------~gfnis~~A~n~LT~g-~a--- 99 (119)
T PF07249_consen 39 LPNFPYIGGAPAVAGW-NSPNCGTCWKLTYN------GRSIYVLAIDHAG--------GGFNISLDAMNDLTNG-QA--- 99 (119)
T ss_dssp STTTTSEEEETT--ST-T-TTTT-EEEEEET------TEEEEEEEEEE-S--------SSEEE-HHHHHHHHTS--C---
T ss_pred cCCCCeeccccccccC-CCCCCCCeEEEEEC------CeEEEEEEEecCC--------CcccchHHHHHHhcCC-cc---
Confidence 343345766654 456 45789999999962 6899999999943 4599999999999873 22
Q ss_pred ccCCeEEEEEEEEe
Q 044689 134 RDAGVLEVRYARVA 147 (253)
Q Consensus 134 ~~~G~~~i~wr~V~ 147 (253)
...|+++++|++|+
T Consensus 100 ~~lG~V~a~~~qV~ 113 (119)
T PF07249_consen 100 VELGRVDATYTQVD 113 (119)
T ss_dssp CCC-EEE-EEEEE-
T ss_pred cceeEEEEEEEEcC
Confidence 56799999999996
No 12
>TIGR00413 rlpA rare lipoprotein A. This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.
Probab=97.78 E-value=0.00035 Score=60.51 Aligned_cols=95 Identities=25% Similarity=0.287 Sum_probs=68.5
Q ss_pred EEEEEeCCC-CCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCcCCCcEEEEEECCCCCCCCCcEEEEEeecCCCCC
Q 044689 28 AGATWYGSP-DGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGP 106 (253)
Q Consensus 28 G~aT~Y~~~-~~~~~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~~v~v~V~D~Cp~~~ 106 (253)
|.|+|||.. .| ..-|.|-.- . ...++||-.+ ...|..++|+.... +++|+|+|.|++|-
T Consensus 1 G~ASwYg~~f~G---~~TAnGe~y--~---~~~~tAAHkt------LPlgT~V~VtNl~n----grsviVrVnDRGPf-- 60 (208)
T TIGR00413 1 GLASWYGPKFHG---RKTANGEVY--N---MKALTAAHKT------LPFNTYVKVTNLHN----NRSVIVRINDRGPF-- 60 (208)
T ss_pred CEEeEeCCCCCC---CcCCCCeec--C---CCcccccccc------CCCCCEEEEEECCC----CCEEEEEEeCCCCC--
Confidence 679999853 22 133443221 1 1234555432 37889999996543 78999999999996
Q ss_pred CCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecCCC
Q 044689 107 CVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYS 151 (253)
Q Consensus 107 C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~ 151 (253)
.+..-+|||.+|+.+|.- .+.|+.+|+.+.+.....
T Consensus 61 --~~gRiIDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~~ 96 (208)
T TIGR00413 61 --SDDRIIDLSHAAAREIGL-------ISRGVGQVRIEVLHVAKN 96 (208)
T ss_pred --CCCCEEECCHHHHHHcCC-------CcCceEEEEEEEEecCCC
Confidence 235789999999999987 689999999999987753
No 13
>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]
Probab=96.97 E-value=0.0034 Score=55.36 Aligned_cols=59 Identities=31% Similarity=0.353 Sum_probs=50.4
Q ss_pred CcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecC
Q 044689 76 GACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACD 149 (253)
Q Consensus 76 G~C~~V~c~~~~~C~~~~v~v~V~D~Cp~~~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~ 149 (253)
|.-++|+-.+. +++|+|+|.|++| +.. .-.+|||.+|+++|+- .+.|+.+|+.+++.+.
T Consensus 120 ~t~v~VtNl~N----grsvvVRINDRGP---f~~-gRiIDlS~aAA~~l~~-------~~~G~a~V~i~~l~~~ 178 (233)
T COG0797 120 PTYVRVTNLDN----GRSVVVRINDRGP---FVS-GRIIDLSKAAADKLGM-------IRSGVAKVRIEVLGVA 178 (233)
T ss_pred CCEEEEEEccC----CcEEEEEEeCCCC---CCC-CcEeEcCHHHHHHhCC-------ccCceEEEEEEEeccc
Confidence 46689996654 8999999999999 544 4689999999999987 6899999999999976
No 14
>PRK10672 rare lipoprotein A; Provisional
Probab=96.72 E-value=0.023 Score=53.31 Aligned_cols=93 Identities=20% Similarity=0.168 Sum_probs=61.0
Q ss_pred eEEEEEEeCCCCCCCCCcCccCCCCCCCCCCCCCeEEEeCccccCCCcCCCcEEEEEECCCCCCCCCcEEEEEeecCCCC
Q 044689 26 STAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGG 105 (253)
Q Consensus 26 ~~G~aT~Y~~~~~~~~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~~v~v~V~D~Cp~~ 105 (253)
..|.|+|||..-. ...-|.|=. ++ ...+.||-.+ .--|..++|+.... +++|+|+|.|++|-
T Consensus 79 ~~G~ASwYg~~f~--G~~TA~Ge~--~~---~~~~tAAH~t------LPlps~vrVtNl~n----grsvvVrVnDRGP~- 140 (361)
T PRK10672 79 QAGLAAIYDAEAG--SNLTASGER--FD---PNALTAAHPT------LPIPSYVRVTNLAN----GRMIVVRINDRGPY- 140 (361)
T ss_pred eEEEEEEeCCccC--CCcCcCcee--ec---CCcCeeeccC------CCCCCEEEEEECCC----CcEEEEEEeCCCCC-
Confidence 3699999996321 011222211 01 1234555432 35678899996653 89999999999996
Q ss_pred CCCCCCCcEEcChHHHhhccCCCcccccccCCeEEEEEEEE
Q 044689 106 PCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARV 146 (253)
Q Consensus 106 ~C~~~~~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V 146 (253)
.+..-+|||.+|+.+|.- ...+.+.|+.-.|
T Consensus 141 ---~~gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v 171 (361)
T PRK10672 141 ---GPGRVIDLSRAAADRLNT-------SNNTKVRIDPIIV 171 (361)
T ss_pred ---CCCCeeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence 235789999999999986 3456667766665
No 15
>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.
Probab=93.30 E-value=0.11 Score=44.90 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=33.1
Q ss_pred EEEeCccccCCCcCCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChH
Q 044689 61 VTAIGPSLYKSGKECGACYQVKCTRHPACSGRAVRVVITDFCPGGPCVSESAHFDLSGT 119 (253)
Q Consensus 61 ~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~~~~v~v~V~D~Cp~~~C~~~~~~~DLs~~ 119 (253)
+||.+-.-......|++|||++=++. .-.+|+.+|+|++.=-+ -..+||||..+
T Consensus 70 faA~~~~G~~e~~~Cc~Cy~LtFt~g-~l~GKkmiVQ~tNtG~d----lg~n~FDl~iP 123 (201)
T PF02015_consen 70 FAAASITGGSESSWCCACYELTFTSG-PLKGKKMIVQVTNTGGD----LGSNQFDLAIP 123 (201)
T ss_dssp EEEEE-TT--HHHHTT-EEEEEE-SS-TTTT-EEEEEEEEE-TT----TTTTEEEEE-T
T ss_pred eeeeeecCCCCCCcccceEEEEEcCC-CcCCCEeEEEecccCCC----CCCCeEEEEeC
Confidence 56665332223478999999997652 23588999999999665 23689999763
No 16
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=65.96 E-value=49 Score=28.98 Aligned_cols=98 Identities=22% Similarity=0.298 Sum_probs=51.4
Q ss_pred CcEEcChHHHhhccCCCcccccccCCeEEEEEEEEecCCCCcceEEEEccCCCCceeEEEEEEecCCCCeeEEEEEcc-C
Q 044689 112 AHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-S 190 (253)
Q Consensus 112 ~~~DLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~GSs~~w~av~v~n~~g~g~I~sVev~~~-~ 190 (253)
.+|.++|++|..-.+ . |..-+=...+ .+.|.|++-+ ++|.|.+..-..+|..-.|... .
T Consensus 48 ~~FyV~P~~f~~~tG-----------~----WY~~~~~~~~-~~aF~V~~Ps----l~l~v~d~~t~~dvt~~~V~~G~~ 107 (209)
T PF12863_consen 48 TNFYVSPAAFGGKTG-----------N----WYQWNGTPKG-DVAFYVQDPS----LSLKVWDANTDKDVTGKTVPRGDN 107 (209)
T ss_pred cCEEEChHHhCCccc-----------c----eEecCCCCCc-ceEEEEeCCc----eEEEEEeccccccccCceeccCCe
Confidence 579999999876433 2 3332222222 6899999876 7888887654334433333221 0
Q ss_pred CceEEccccCcceeEeCCCCCCCCCeEEEEEEeeCCeEEEE
Q 044689 191 GEWRAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVA 231 (253)
Q Consensus 191 ~~w~~m~r~~g~~W~~~~~~~~~~p~~~RvT~~~~G~~iv~ 231 (253)
-.++- .-+-+...+-.+..+..++++|+|++ -+|.+++.
T Consensus 108 v~FrI-~tNL~~~~~R~g~~~~~~~v~I~V~~-P~G~~~t~ 146 (209)
T PF12863_consen 108 VNFRI-DTNLYSIFQRGGYTPGDGPVDIKVTT-PSGATYTS 146 (209)
T ss_pred EEEEE-cccHHHHhhcCCCCCCcceEEEEEeC-CCCcEEEE
Confidence 11111 11111111111111223469999999 88877665
No 17
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=60.49 E-value=15 Score=29.58 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=15.2
Q ss_pred CC-CeeEEEEEcc-CCceEEccc
Q 044689 178 DG-DLAGVDVKEG-SGEWRAMQQ 198 (253)
Q Consensus 178 ~g-~I~sVev~~~-~~~w~~m~r 198 (253)
.+ +|.+|||... +.+|++...
T Consensus 39 ~g~~I~rVEVS~DgG~tW~~A~l 61 (131)
T PF03404_consen 39 GGRGIARVEVSTDGGKTWQEATL 61 (131)
T ss_dssp TT--EEEEEEESSTTSSEEE-EE
T ss_pred CCcceEEEEEEeCCCCCcEEeEe
Confidence 35 7999999998 668987553
No 18
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=59.83 E-value=52 Score=26.41 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=36.7
Q ss_pred CCceeEEEEEEecCCCCeeEEEEEcc---CC---ce-----EEccccCc--ceeEeCCCCCCCCCeEEEEEE
Q 044689 164 NPNYLAVVVEFEDGDGDLAGVDVKEG---SG---EW-----RAMQQSWG--ATWKLDAGSELHPPLSLRLTS 222 (253)
Q Consensus 164 s~~w~av~v~n~~g~g~I~sVev~~~---~~---~w-----~~m~r~~g--~~W~~~~~~~~~~p~~~RvT~ 222 (253)
.+||..|.|.|.++ ...++|+|.+. ++ ++ --+.+..- ..+..... |-++.|.||+.+
T Consensus 49 gqyyVpF~V~N~gg-~TAasV~V~geL~~~~~v~E~~e~tiDfl~g~e~~~G~~IF~~d-P~~g~L~irv~g 118 (122)
T TIGR02588 49 GQYYVPFAIHNLGG-TTAAAVNIRGELRQAGAVVENAEVTIDYLASGSKENGTLIFRSD-PRNGQLRLRVAG 118 (122)
T ss_pred CEEEEEEEEEeCCC-cEEEEEEEEEEEccCCceeEEeeEEEEEcCCCCeEeEEEEEccC-cccCeEEEEEEe
Confidence 57999999999987 46999999986 21 11 12333221 13333332 456788888876
No 19
>cd02110 SO_family_Moco_dimer Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO).
Probab=48.12 E-value=34 Score=31.63 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=30.1
Q ss_pred CCeeEEEEEcc-CCceEEccccCc-------ceeEeCCCCCCCC--CeEEEEEEeeCCeE
Q 044689 179 GDLAGVDVKEG-SGEWRAMQQSWG-------ATWKLDAGSELHP--PLSLRLTSQYSSQT 228 (253)
Q Consensus 179 g~I~sVev~~~-~~~w~~m~r~~g-------~~W~~~~~~~~~~--p~~~RvT~~~~G~~ 228 (253)
.+|++|||... +.+|++..-... -.|.+.-. +.++ -+.+|.++ ..|++
T Consensus 236 ~~I~rVEvS~DgG~tW~~A~l~~~~~~~~~W~~W~~~~~-~~~G~~~l~vRA~D-~~g~~ 293 (317)
T cd02110 236 RGIRRVEVSLDGGRTWQEARLEGPLAGPRAWRQWELDWD-LPPGEYELVARATD-STGNV 293 (317)
T ss_pred CCEEEEEEEeCCCCcceEeEccCCcCCCCEEEEEEEEEE-cCCCcEEEEEEEEC-CCCCc
Confidence 47999999998 559987654321 14555432 2345 55667777 66653
No 20
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=45.38 E-value=53 Score=24.93 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=33.1
Q ss_pred eeEEEEEccCCceE----EccccCcceeEeCCCC-------CCC-CCeEEEEEEeeCCeEEEE
Q 044689 181 LAGVDVKEGSGEWR----AMQQSWGATWKLDAGS-------ELH-PPLSLRLTSQYSSQTLVA 231 (253)
Q Consensus 181 I~sVev~~~~~~w~----~m~r~~g~~W~~~~~~-------~~~-~p~~~RvT~~~~G~~iv~ 231 (253)
-++|+|.+.-..|. +|.|...-+|++.-.. ... ..+.+||+. .+|+++..
T Consensus 16 A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~-~~G~~~~~ 77 (99)
T cd02854 16 AEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVT-PSGEWIDR 77 (99)
T ss_pred CCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEe-CCCCEEEE
Confidence 45677766544564 4888766789765321 113 489999999 78887654
No 21
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=35.98 E-value=1.5e+02 Score=21.29 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=33.7
Q ss_pred CeeEEEEEccCCceE---EccccCcceeEeCCCCCCCCCeEEEEEEeeCCeEEEEc
Q 044689 180 DLAGVDVKEGSGEWR---AMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTLVAN 232 (253)
Q Consensus 180 ~I~sVev~~~~~~w~---~m~r~~g~~W~~~~~~~~~~p~~~RvT~~~~G~~iv~~ 232 (253)
+-++|+|.++=..|+ +|.|..+. |.+.-. .+.+.+.+|+.. +|+++...
T Consensus 11 ~a~~V~v~G~F~~W~~~~pm~~~~~~-~~~~~~-L~~g~y~YkF~V--dg~w~~d~ 62 (79)
T cd02859 11 GGKEVYVTGSFDNWKKKIPLEKSGKG-FSATLR-LPPGKYQYKFIV--DGEWRHSP 62 (79)
T ss_pred CCcEEEEEEEcCCCCccccceECCCC-cEEEEE-cCCCCEEEEEEE--CCEEEeCC
Confidence 368899998745575 58887655 765442 345788888876 67887664
No 22
>PF10417 1-cysPrx_C: C-terminal domain of 1-Cys peroxiredoxin; InterPro: IPR019479 This entry represents the C-terminal domain of 1-Cys peroxiredoxin, a member of the peroxiredoxin superfamily which protect cells against membrane oxidation through glutathione (GSH)-dependent reduction of phospholipid hydroperoxides to corresponding alcohols []. The C-terminal domain is crucial for providing the extra cysteine necessary for dimerisation of the whole molecule. Loss of the enzyme's peroxidase activity is associated with oxidation of the catalytic cysteine found upstream of this domain. Glutathionylation, presumably through its disruption of protein structure, facilitates access for GSH, resulting in spontaneous reduction of the mixed disulphide to the sulphydryl and consequent activation of the enzyme []. The domain is associated with IPR000866 from INTERPRO, which carries the catalytic cysteine. ; GO: 0051920 peroxiredoxin activity, 0055114 oxidation-reduction process; PDB: 1ZOF_E 2H01_A 3EMP_D 1YF1_G 1YF0_D 1N8J_C 1YEP_D 1YEX_D 2V41_H 2V32_C ....
Probab=30.44 E-value=29 Score=22.05 Aligned_cols=11 Identities=36% Similarity=1.029 Sum_probs=9.3
Q ss_pred cccCCCCCCcE
Q 044689 234 VIPQGWMPGAT 244 (253)
Q Consensus 234 vip~~~~~G~~ 244 (253)
+.|+||++|..
T Consensus 11 ~tPanW~pGd~ 21 (40)
T PF10417_consen 11 ATPANWKPGDD 21 (40)
T ss_dssp BBCTTTCTTSG
T ss_pred ccCcCCCCCCC
Confidence 78999999863
No 23
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=30.17 E-value=91 Score=25.20 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=22.9
Q ss_pred ccCCeEEEEEEEEecCC--CCcceEEEEcc
Q 044689 134 RDAGVLEVRYARVACDY--SGRNIAFHVDQ 161 (253)
Q Consensus 134 ~~~G~~~i~wr~V~C~~--~g~ni~~~v~~ 161 (253)
+..|.+-+.||.|+-+- .++.+.|.|+.
T Consensus 97 L~aG~Y~v~WrvvS~DGH~v~G~~sFsV~~ 126 (127)
T COG2372 97 LKAGVYTVDWRVVSSDGHVVKGSISFSVGA 126 (127)
T ss_pred CCCCcEEEEEEEEecCCcEeccEEEEEecC
Confidence 78999999999999984 23478888874
No 24
>cd02113 bact_SoxC_Moco bacterial SoxC is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. SoxC is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SoxD, a small c-type heme containing subunit, it forms a hetrotetrameric sulfite dehydrogenase. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=28.59 E-value=88 Score=29.16 Aligned_cols=29 Identities=21% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEe--cCCCCeeEEEEEcc-CCceEEccc
Q 044689 170 VVVEFE--DGDGDLAGVDVKEG-SGEWRAMQQ 198 (253)
Q Consensus 170 v~v~n~--~g~g~I~sVev~~~-~~~w~~m~r 198 (253)
+.|+.. .|.++|.+|||..+ +.+|+....
T Consensus 227 ~~i~G~A~sG~~~I~rVEVS~DgG~tW~~A~l 258 (326)
T cd02113 227 HEISGLAWSGRGRIRRVDVSFDGGRTWQDARL 258 (326)
T ss_pred EEEEEEEECCCCCEEEEEEEcCCCCCceECcc
Confidence 444443 33457999999998 568987543
No 25
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=28.46 E-value=1.1e+02 Score=28.89 Aligned_cols=49 Identities=27% Similarity=0.458 Sum_probs=28.6
Q ss_pred CCCeeEEEEEcc-CCceEEccc--cCcc----eeEeCCCCCCCCC--eEEEEEEeeCCe
Q 044689 178 DGDLAGVDVKEG-SGEWRAMQQ--SWGA----TWKLDAGSELHPP--LSLRLTSQYSSQ 227 (253)
Q Consensus 178 ~g~I~sVev~~~-~~~w~~m~r--~~g~----~W~~~~~~~~~~p--~~~RvT~~~~G~ 227 (253)
.+.|++|||... +.+|++..- ..+. .|++.=..+..+. +.+|-|+ ..|+
T Consensus 287 ~~~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~D-~~G~ 344 (367)
T cd02114 287 GSGIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRATN-NDGQ 344 (367)
T ss_pred CCCEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEEc-CCCC
Confidence 357999999998 668987542 2222 3555321112454 4556677 6664
No 26
>PF08290 Hep_core_N: Hepatitis core protein, putative zinc finger; InterPro: IPR013195 This entry represent a short region found at the N terminus of some viral capsid (HBcAg) proteins from various Hepatitis B virus (HBV), which is a major human pathogen. The conservation of four Cys residues suggests that this region acts as a zinc binding domain. Hepatitis virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005198 structural molecule activity, 0009405 pathogenesis
Probab=27.82 E-value=35 Score=19.97 Aligned_cols=12 Identities=42% Similarity=0.866 Sum_probs=9.4
Q ss_pred eeeeecccccCc
Q 044689 2 LCYLELCSCFYP 13 (253)
Q Consensus 2 ~~~~~~~~~~~~ 13 (253)
||++++|+|-|-
T Consensus 6 lcliiscscpt~ 17 (27)
T PF08290_consen 6 LCLIISCSCPTV 17 (27)
T ss_pred eeeeeeccCCcc
Confidence 688999999553
No 27
>PRK10301 hypothetical protein; Provisional
Probab=27.61 E-value=96 Score=24.62 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=20.8
Q ss_pred ccCCeEEEEEEEEecCC---CCcceEEEEc
Q 044689 134 RDAGVLEVRYARVACDY---SGRNIAFHVD 160 (253)
Q Consensus 134 ~~~G~~~i~wr~V~C~~---~g~ni~~~v~ 160 (253)
+..|.+.|+||-|+=+- .| .++|.|+
T Consensus 96 L~~G~YtV~Wrvvs~DGH~~~G-~~~F~V~ 124 (124)
T PRK10301 96 LKPGTYTVDWHVVSVDGHKTKG-HYTFSVK 124 (124)
T ss_pred CCCccEEEEEEEEecCCCccCC-eEEEEEC
Confidence 57899999999999873 44 6777765
No 28
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=27.39 E-value=2.2e+02 Score=20.87 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=21.1
Q ss_pred EEccccC-cceeEeCCCCCCC-CCeEEEEEEeeCCeEEEE
Q 044689 194 RAMQQSW-GATWKLDAGSELH-PPLSLRLTSQYSSQTLVA 231 (253)
Q Consensus 194 ~~m~r~~-g~~W~~~~~~~~~-~p~~~RvT~~~~G~~iv~ 231 (253)
.+|.|.. ...|.+.-..... ..+.+|++. .+|.+...
T Consensus 49 ~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~-~~g~~~~~ 87 (106)
T cd02855 49 HPMRRRGDSGVWELFIPGLGEGELYKYEILG-ADGHLPLK 87 (106)
T ss_pred eecEECCCCCEEEEEECCCCCCCEEEEEEEC-CCCCEEEe
Confidence 3677755 5678743211122 368999887 65555433
No 29
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=27.29 E-value=1.7e+02 Score=20.90 Aligned_cols=45 Identities=9% Similarity=0.188 Sum_probs=29.6
Q ss_pred eEEEEEccCCce--EEccccCcceeEeCCCCCCCCCeEEEEEEeeCCeEE
Q 044689 182 AGVDVKEGSGEW--RAMQQSWGATWKLDAGSELHPPLSLRLTSQYSSQTL 229 (253)
Q Consensus 182 ~sVev~~~~~~w--~~m~r~~g~~W~~~~~~~~~~p~~~RvT~~~~G~~i 229 (253)
++|+|.++-..| .+|+|.....|++.-. ...+.+.+|+.. +|++.
T Consensus 14 ~~V~v~G~fn~W~~~~m~~~~~G~w~~~~~-l~~G~y~Ykf~v--dg~~~ 60 (82)
T cd02861 14 DSVYLAGSFNNWNAIPMEREGDGLWVVTVE-LRPGRYEYKFVV--DGEWV 60 (82)
T ss_pred CEEEEEeECCCCCcccCEECCCCcEEEEEe-CCCCcEEEEEEE--CCEEe
Confidence 788888874467 4688876457876542 234566777765 56665
No 30
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=25.75 E-value=78 Score=26.45 Aligned_cols=29 Identities=7% Similarity=0.210 Sum_probs=21.2
Q ss_pred CeEEEEEEeeCCe-EEEEcccccCCCCCCcE
Q 044689 215 PLSLRLTSQYSSQ-TLVANNVIPQGWMPGAT 244 (253)
Q Consensus 215 p~~~RvT~~~~G~-~iv~~~vip~~~~~G~~ 244 (253)
.++|+||| ...+ .|....++|.-|+.|+-
T Consensus 73 ~v~F~vtD-~~~~v~V~Y~GilPDlFrEGqg 102 (155)
T PRK13159 73 KVSFTVID-KNAATQVEYTGILPDLFRDNQS 102 (155)
T ss_pred EEEEEEEc-CCcEEEEEEccCCCccccCCCe
Confidence 67888888 4443 45557799999988864
No 31
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.43 E-value=1.8e+02 Score=27.03 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=46.5
Q ss_pred EEEEEEEecCCCCcceEEEEccCCCCceeEEEEEEecCCCCeeEEEEEccCCceEEccccCcceeEeCCCCCCCCCeEEE
Q 044689 140 EVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLDAGSELHPPLSLR 219 (253)
Q Consensus 140 ~i~wr~V~C~~~g~ni~~~v~~GSs~~w~av~v~n~~g~g~I~sVev~~~~~~w~~m~r~~g~~W~~~~~~~~~~p~~~R 219 (253)
.+.|..|.=+ . ++.|.+.+.|.. + .+ .++.++| +.|+++. -.|+++|+
T Consensus 47 ~l~wq~l~~~--~-~~~~~L~~~sq~-~---~f--~~~~s~v--------------------AAf~lPa---n~G~l~i~ 94 (303)
T PRK10564 47 QLTWQPVDQS--K-TQTTQLATGGQQ-L---NV--AGISGPV--------------------AAYSLPA---NIGELTLT 94 (303)
T ss_pred cCCceEccCC--C-ceEEEeCCCCcc-e---ec--CCCcccE--------------------EEEEccc---ccccEEEE
Confidence 5777777633 3 678888876533 2 11 1222233 4456654 35788888
Q ss_pred EEEeeCCeEEEEcc--cccCCCCCCcEEecCcccc
Q 044689 220 LTSQYSSQTLVANN--VIPQGWMPGATYRSLVNYN 252 (253)
Q Consensus 220 vT~~~~G~~iv~~~--vip~~~~~G~~y~t~~qf~ 252 (253)
|+|-+..+.|.+.+ ++-++|++=.+|.+. +|+
T Consensus 95 LsS~v~~~~VfaPnVlvLD~~~~~~~~y~s~-~F~ 128 (303)
T PRK10564 95 LSSLVNDKSVFAPNVLVLDQNMRPAAFYPSS-YFT 128 (303)
T ss_pred EEEEecCCcEEeceEEEEcCCCCEEEEeccc-ceE
Confidence 88854445666666 445666666666655 343
No 32
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=22.75 E-value=95 Score=23.19 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=17.8
Q ss_pred ccCCeEEEEEEEEecCC---CCcceEEEEc
Q 044689 134 RDAGVLEVRYARVACDY---SGRNIAFHVD 160 (253)
Q Consensus 134 ~~~G~~~i~wr~V~C~~---~g~ni~~~v~ 160 (253)
+..|.+.|+||-|+=+- .| .+.|.||
T Consensus 69 l~~G~YtV~wrvvs~DGH~~~G-~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPVSG-SFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEEEE-EEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCcCC-EEEEEEC
Confidence 67899999999999652 23 5667664
No 33
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=21.76 E-value=2.1e+02 Score=20.13 Aligned_cols=50 Identities=14% Similarity=0.219 Sum_probs=31.6
Q ss_pred eeEEEEEccCCc-e----EEcc-ccCcceeEeCCCCCCC--C-CeEEEEEEeeCCeEEEE
Q 044689 181 LAGVDVKEGSGE-W----RAMQ-QSWGATWKLDAGSELH--P-PLSLRLTSQYSSQTLVA 231 (253)
Q Consensus 181 I~sVev~~~~~~-w----~~m~-r~~g~~W~~~~~~~~~--~-p~~~RvT~~~~G~~iv~ 231 (253)
-++|+|...... | .+|+ +..+.+|++.-...+. + -+.+||+. .+|++...
T Consensus 22 A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~-~~g~~~~~ 80 (85)
T PF02922_consen 22 AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDG-DDGETPEV 80 (85)
T ss_dssp ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEE-TTTEEEEE
T ss_pred CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEe-CCCcEEEE
Confidence 667777665222 4 5788 4677799764321133 3 89999999 77765554
No 34
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=20.23 E-value=1.2e+02 Score=24.26 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=18.0
Q ss_pred CCCeEEEEEEeeCCe-EEEEcccccCCCCCCcEE
Q 044689 213 HPPLSLRLTSQYSSQ-TLVANNVIPQGWMPGATY 245 (253)
Q Consensus 213 ~~p~~~RvT~~~~G~-~iv~~~vip~~~~~G~~y 245 (253)
...++|.||+ ...+ .|+...+.|++|+.|...
T Consensus 70 ~~~~~F~i~D-~~~~i~V~Y~G~~Pd~F~eg~~V 102 (131)
T PF03100_consen 70 GNTLTFTITD-GGKEIPVVYTGPLPDLFREGQGV 102 (131)
T ss_dssp SSEEEEEEE--SS-EEEEEEES--CTT--TTSEE
T ss_pred CCEEEEEEEE-CCcEEEEEECCCCCccccCCCeE
Confidence 3588888998 4333 455678999999887653
No 35
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.01 E-value=1.3e+02 Score=24.82 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=20.9
Q ss_pred CCeEEEEEEeeCCe-EEEEcccccCCCCCCcE
Q 044689 214 PPLSLRLTSQYSSQ-TLVANNVIPQGWMPGAT 244 (253)
Q Consensus 214 ~p~~~RvT~~~~G~-~iv~~~vip~~~~~G~~ 244 (253)
..++|+||+ ...+ .|+...++|+.|+.|+-
T Consensus 71 ~~~~F~ltD-~~~~i~V~Y~G~lPd~F~eg~~ 101 (148)
T PRK13254 71 LTVRFVVTD-GNATVPVVYTGILPDLFREGQG 101 (148)
T ss_pred CEEEEEEEe-CCeEEEEEECCCCCccccCCCE
Confidence 478888888 4332 34456799999988764
Done!