BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044690
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QJG|A Chain A, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|B Chain B, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|C Chain C, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|D Chain D, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|E Chain E, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|F Chain F, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|G Chain G, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|H Chain H, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|I Chain I, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|J Chain J, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|K Chain K, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
 pdb|3QJG|L Chain L, Epidermin Biosynthesis Protein Epid From Staphylococcus
           Aureus
          Length = 175

 Score = 28.5 bits (62), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 153 DTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYDLI 201
           D    I+S N    +  E L  FC     E ED  + HVDI + K+D I
Sbjct: 33  DEVNVIASTNGRKFINGEILKQFCDNYYDEFEDPFLNHVDIAN-KHDKI 80


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,281,814
Number of Sequences: 62578
Number of extensions: 184505
Number of successful extensions: 377
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 2
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)