Query 044690
Match_columns 207
No_of_seqs 194 out of 1138
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:49:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03156 GDSL esterase/lipase; 100.0 8.7E-45 1.9E-49 311.4 18.9 197 1-207 82-287 (351)
2 cd01837 SGNH_plant_lipase_like 100.0 7.7E-44 1.7E-48 302.0 18.9 197 1-207 54-256 (315)
3 cd01847 Triacylglycerol_lipase 100.0 4.3E-36 9.2E-41 250.8 13.9 161 17-207 54-225 (281)
4 PRK15381 pathogenicity island 100.0 4.7E-34 1E-38 247.4 16.6 144 22-207 197-347 (408)
5 cd01846 fatty_acyltransferase_ 100.0 2.3E-29 5.1E-34 208.6 15.0 159 21-207 55-219 (270)
6 COG3240 Phospholipase/lecithin 99.7 9.1E-18 2E-22 141.7 7.6 164 21-207 106-276 (370)
7 PF00657 Lipase_GDSL: GDSL-lik 99.6 3E-15 6.5E-20 119.9 11.1 158 20-205 40-210 (234)
8 cd01839 SGNH_arylesterase_like 97.7 0.00029 6.4E-09 55.9 8.4 96 74-198 79-180 (208)
9 cd01836 FeeA_FeeB_like SGNH_hy 97.5 0.0011 2.5E-08 51.6 9.5 94 74-197 67-161 (191)
10 cd01833 XynB_like SGNH_hydrola 97.3 0.0018 3.9E-08 48.8 8.8 90 74-198 40-130 (157)
11 cd01834 SGNH_hydrolase_like_2 97.2 0.004 8.7E-08 48.0 9.8 101 75-203 62-163 (191)
12 cd04501 SGNH_hydrolase_like_4 97.1 0.0096 2.1E-07 46.0 10.5 92 75-200 60-151 (183)
13 cd00229 SGNH_hydrolase SGNH_hy 97.0 0.0074 1.6E-07 45.0 9.5 94 73-198 64-158 (187)
14 cd04506 SGNH_hydrolase_YpmR_li 97.0 0.01 2.2E-07 46.7 10.0 103 74-199 68-175 (204)
15 cd01823 SEST_like SEST_like. A 97.0 0.012 2.5E-07 48.2 10.6 114 75-198 81-216 (259)
16 cd01841 NnaC_like NnaC (CMP-Ne 96.9 0.0057 1.2E-07 46.8 8.1 91 74-199 51-142 (174)
17 PF13472 Lipase_GDSL_2: GDSL-l 96.9 0.0057 1.2E-07 46.0 7.6 95 74-199 61-155 (179)
18 cd01829 SGNH_hydrolase_peri2 S 96.8 0.012 2.6E-07 46.0 9.3 96 74-199 59-155 (200)
19 cd01830 XynE_like SGNH_hydrola 96.7 0.02 4.4E-07 45.2 10.0 56 76-135 76-131 (204)
20 cd01838 Isoamyl_acetate_hydrol 96.7 0.012 2.6E-07 45.6 8.5 104 74-199 63-168 (199)
21 cd01832 SGNH_hydrolase_like_1 96.6 0.017 3.7E-07 44.5 8.6 88 74-197 67-155 (185)
22 cd01824 Phospholipase_B_like P 96.5 0.037 7.9E-07 46.6 10.8 147 22-192 83-241 (288)
23 cd01827 sialate_O-acetylestera 96.5 0.041 9E-07 42.5 10.2 53 74-135 67-120 (188)
24 cd01828 sialate_O-acetylestera 96.4 0.017 3.8E-07 44.0 7.5 86 74-198 48-135 (169)
25 cd01820 PAF_acetylesterase_lik 96.3 0.032 6.9E-07 44.5 8.5 88 74-198 89-177 (214)
26 cd01821 Rhamnogalacturan_acety 96.2 0.025 5.4E-07 44.3 7.6 97 74-202 65-161 (198)
27 cd01822 Lysophospholipase_L1_l 95.7 0.15 3.2E-06 38.8 9.6 46 74-131 64-109 (177)
28 cd04502 SGNH_hydrolase_like_7 95.4 0.14 3.1E-06 38.9 8.6 88 74-199 50-138 (171)
29 cd01835 SGNH_hydrolase_like_3 94.7 0.21 4.6E-06 38.7 8.0 93 74-199 69-161 (193)
30 cd01844 SGNH_hydrolase_like_6 94.7 0.42 9.1E-06 36.7 9.5 91 74-197 57-148 (177)
31 cd01825 SGNH_hydrolase_peri1 S 94.3 0.22 4.8E-06 38.2 7.3 92 75-199 57-149 (189)
32 cd01826 acyloxyacyl_hydrolase_ 94.3 0.48 1E-05 40.1 9.5 55 76-134 124-180 (305)
33 PRK10528 multifunctional acyl- 93.9 0.23 4.9E-06 38.9 6.6 44 74-128 71-114 (191)
34 KOG3035 Isoamyl acetate-hydrol 93.9 0.61 1.3E-05 37.6 8.7 109 74-200 68-178 (245)
35 cd01840 SGNH_hydrolase_yrhL_li 93.4 0.94 2E-05 33.9 9.0 14 74-87 50-63 (150)
36 cd01831 Endoglucanase_E_like E 89.3 3.6 7.8E-05 31.1 8.5 47 75-130 56-103 (169)
37 PLN02757 sirohydrochlorine fer 88.1 2.5 5.5E-05 32.2 6.7 62 111-201 60-124 (154)
38 PF02633 Creatininase: Creatin 86.9 4.3 9.3E-05 32.9 8.0 82 80-199 62-143 (237)
39 KOG3670 Phospholipase [Lipid t 82.8 7.8 0.00017 34.0 7.9 52 76-130 186-237 (397)
40 PRK13384 delta-aminolevulinic 81.9 6 0.00013 33.7 6.7 63 107-193 59-121 (322)
41 cd00384 ALAD_PBGS Porphobilino 81.8 6.4 0.00014 33.4 6.8 63 107-193 49-111 (314)
42 cd04823 ALAD_PBGS_aspartate_ri 78.5 8.8 0.00019 32.7 6.6 64 107-193 52-116 (320)
43 cd04824 eu_ALAD_PBGS_cysteine_ 78.0 9.4 0.0002 32.5 6.7 65 107-193 49-114 (320)
44 cd03416 CbiX_SirB_N Sirohydroc 75.3 7.6 0.00017 26.8 4.8 52 112-192 47-98 (101)
45 PRK09283 delta-aminolevulinic 75.2 13 0.00027 31.8 6.7 63 107-193 57-119 (323)
46 COG2755 TesA Lysophospholipase 73.8 17 0.00038 28.4 7.1 14 75-88 78-91 (216)
47 COG2845 Uncharacterized protei 73.1 60 0.0013 28.0 10.3 83 74-181 177-262 (354)
48 PF00490 ALAD: Delta-aminolevu 72.8 17 0.00037 31.1 6.9 64 108-193 56-119 (324)
49 PF01903 CbiX: CbiX; InterPro 70.7 3 6.5E-05 29.0 1.8 53 114-195 42-94 (105)
50 COG0113 HemB Delta-aminolevuli 65.0 18 0.00039 30.7 5.5 65 107-193 59-123 (330)
51 COG3581 Uncharacterized protei 64.8 13 0.00029 32.6 4.8 21 117-139 327-347 (420)
52 COG3240 Phospholipase/lecithin 64.2 3.7 8E-05 35.7 1.3 70 73-143 97-166 (370)
53 PF08885 GSCFA: GSCFA family; 63.2 27 0.00058 28.9 6.2 116 73-206 100-231 (251)
54 cd03412 CbiK_N Anaerobic cobal 63.0 32 0.0007 25.0 6.0 53 109-193 56-108 (127)
55 PF08029 HisG_C: HisG, C-termi 61.6 8.3 0.00018 25.7 2.4 21 111-131 52-72 (75)
56 cd03414 CbiX_SirB_C Sirohydroc 59.7 37 0.0008 23.9 5.8 52 111-193 47-98 (117)
57 KOG2794 Delta-aminolevulinic a 58.3 20 0.00043 30.0 4.5 93 74-193 39-131 (340)
58 TIGR03455 HisG_C-term ATP phos 56.5 15 0.00033 25.8 3.2 23 109-131 74-96 (100)
59 KOG4079 Putative mitochondrial 55.0 5.5 0.00012 29.7 0.7 16 120-135 42-57 (169)
60 PRK13660 hypothetical protein; 52.4 1E+02 0.0023 24.1 7.6 27 104-130 24-50 (182)
61 PF06908 DUF1273: Protein of u 51.5 43 0.00094 26.1 5.3 27 104-130 24-50 (177)
62 PRK13717 conjugal transfer pro 48.0 41 0.00088 24.8 4.3 27 158-184 70-96 (128)
63 PF07555 NAGidase: beta-N-acet 47.9 1.3E+02 0.0028 25.6 8.0 24 106-129 88-111 (306)
64 PRK09121 5-methyltetrahydropte 42.8 94 0.002 26.8 6.5 31 99-129 146-176 (339)
65 PF02896 PEP-utilizers_C: PEP- 41.9 46 0.001 28.1 4.4 56 74-130 195-255 (293)
66 COG1402 Uncharacterized protei 41.2 41 0.00088 27.8 3.9 25 106-130 87-111 (250)
67 TIGR01091 upp uracil phosphori 40.6 1.1E+02 0.0024 24.2 6.2 22 110-131 137-158 (207)
68 TIGR02089 TTC tartrate dehydro 39.4 29 0.00063 30.2 2.9 36 172-207 200-235 (352)
69 PLN00123 isocitrate dehydrogen 38.2 51 0.0011 28.8 4.2 37 171-207 204-240 (360)
70 PRK08194 tartrate dehydrogenas 37.7 34 0.00073 29.8 3.0 36 172-207 197-232 (352)
71 PF08331 DUF1730: Domain of un 37.0 1.2E+02 0.0027 19.9 6.2 67 120-193 8-78 (78)
72 TIGR02744 TrbI_Ftype type-F co 36.9 77 0.0017 22.8 4.3 27 158-184 57-83 (112)
73 PRK06520 5-methyltetrahydropte 36.4 57 0.0012 28.4 4.3 35 99-134 160-194 (368)
74 PRK00772 3-isopropylmalate deh 36.2 36 0.00078 29.7 2.9 38 170-207 199-236 (358)
75 PRK03437 3-isopropylmalate deh 35.8 44 0.00096 29.0 3.4 36 172-207 197-232 (344)
76 PRK07807 inosine 5-monophospha 34.8 72 0.0016 29.0 4.7 29 167-195 250-278 (479)
77 PRK08997 isocitrate dehydrogen 34.6 67 0.0014 27.8 4.3 36 172-207 184-219 (334)
78 PRK06233 hypothetical protein; 34.6 63 0.0014 28.2 4.3 35 99-134 161-195 (372)
79 TIGR01417 PTS_I_fam phosphoeno 34.2 96 0.0021 28.8 5.5 15 76-90 444-458 (565)
80 cd01823 SEST_like SEST_like. A 33.8 96 0.0021 24.9 5.0 38 160-197 121-158 (259)
81 cd03413 CbiK_C Anaerobic cobal 33.3 52 0.0011 23.0 2.9 18 112-129 45-62 (103)
82 cd03411 Ferrochelatase_N Ferro 33.1 55 0.0012 24.7 3.3 24 111-134 101-124 (159)
83 TIGR00175 mito_nad_idh isocitr 32.9 65 0.0014 27.8 4.0 37 171-207 181-217 (333)
84 KOG0907 Thioredoxin [Posttrans 32.6 75 0.0016 22.4 3.7 29 171-200 38-66 (106)
85 cd04236 AAK_NAGS-Urea AAK_NAGS 32.3 1.8E+02 0.0038 24.4 6.4 45 74-133 34-78 (271)
86 cd03415 CbiX_CbiC Archaeal sir 31.5 56 0.0012 23.9 2.9 19 111-129 46-64 (125)
87 TIGR00169 leuB 3-isopropylmala 31.3 83 0.0018 27.4 4.4 37 171-207 197-233 (349)
88 PLN00118 isocitrate dehydrogen 31.2 75 0.0016 27.9 4.1 37 171-207 220-256 (372)
89 COG0276 HemH Protoheme ferro-l 31.1 1.8E+02 0.0039 25.0 6.3 23 112-134 105-127 (320)
90 cd00419 Ferrochelatase_C Ferro 30.0 60 0.0013 23.9 2.9 17 113-129 81-97 (135)
91 COG1903 CbiD Cobalamin biosynt 30.0 3.3E+02 0.0071 23.9 7.7 87 28-133 167-258 (367)
92 COG1080 PtsA Phosphoenolpyruva 28.2 78 0.0017 29.4 3.8 51 72-122 442-497 (574)
93 cd04506 SGNH_hydrolase_YpmR_li 28.0 1.9E+02 0.004 22.1 5.6 32 163-194 99-130 (204)
94 COG1031 Uncharacterized Fe-S o 27.6 1.9E+02 0.004 26.5 5.9 69 109-195 218-286 (560)
95 PF12905 Glyco_hydro_101: Endo 27.3 81 0.0018 28.1 3.6 26 170-195 158-183 (425)
96 PRK14025 multifunctional 3-iso 27.1 99 0.0022 26.7 4.1 38 170-207 179-216 (330)
97 COG3605 PtsP Signal transducti 27.1 44 0.00095 31.3 2.0 20 73-92 616-635 (756)
98 cd02988 Phd_like_VIAF Phosduci 27.1 2.4E+02 0.0052 22.1 6.0 26 171-196 119-144 (192)
99 cd02989 Phd_like_TxnDC9 Phosdu 26.5 1.1E+02 0.0025 21.4 3.8 26 171-196 39-64 (113)
100 PF00180 Iso_dh: Isocitrate/is 26.2 90 0.0019 27.0 3.7 36 172-207 196-232 (348)
101 cd03409 Chelatase_Class_II Cla 25.5 1.1E+02 0.0023 20.6 3.4 22 113-134 49-70 (101)
102 PRK00489 hisG ATP phosphoribos 25.2 81 0.0018 26.3 3.2 22 110-131 261-282 (287)
103 PRK09240 thiH thiamine biosynt 25.0 2.6E+02 0.0057 24.3 6.5 27 108-134 106-133 (371)
104 cd02957 Phd_like Phosducin (Ph 24.8 1.8E+02 0.0038 20.2 4.5 25 172-196 42-66 (113)
105 PRK11177 phosphoenolpyruvate-p 24.8 1.7E+02 0.0036 27.3 5.4 17 75-91 444-460 (575)
106 cd02987 Phd_like_Phd Phosducin 24.7 2.2E+02 0.0047 21.9 5.3 26 171-196 100-125 (175)
107 TIGR02351 thiH thiazole biosyn 24.5 2.3E+02 0.005 24.5 6.0 23 108-130 105-127 (366)
108 PF02065 Melibiase: Melibiase; 24.4 4.8E+02 0.01 23.0 8.0 32 163-194 205-236 (394)
109 cd03311 CIMS_C_terminal_like C 23.6 1.2E+02 0.0025 25.8 4.0 38 99-137 145-182 (332)
110 PLN02329 3-isopropylmalate deh 23.5 53 0.0012 29.2 1.8 35 173-207 247-281 (409)
111 PF09907 DUF2136: Uncharacteri 23.4 65 0.0014 21.4 1.9 19 70-88 31-49 (76)
112 PF09677 TrbI_Ftype: Type-F co 23.0 1.8E+02 0.004 20.7 4.3 26 158-183 56-81 (111)
113 PF05141 DIT1_PvcA: Pyoverdine 22.5 1.9E+02 0.004 24.3 4.8 67 106-196 43-109 (278)
114 cd03312 CIMS_N_terminal_like C 22.4 1.4E+02 0.0031 25.9 4.3 37 99-136 172-208 (360)
115 PRK00923 sirohydrochlorin coba 22.2 1.1E+02 0.0023 22.0 3.0 19 111-129 48-66 (126)
116 PF00308 Bac_DnaA: Bacterial d 22.0 1.7E+02 0.0036 23.3 4.4 31 171-201 50-80 (219)
117 TIGR02088 LEU3_arch isopropylm 21.3 1.4E+02 0.0031 25.6 4.0 36 171-207 176-211 (322)
118 smart00340 HALZ homeobox assoc 21.3 1E+02 0.0022 18.1 2.1 17 167-183 19-35 (44)
119 PRK11061 fused phosphoenolpyru 21.2 1.3E+02 0.0028 29.0 4.1 19 74-92 609-627 (748)
120 PF01717 Meth_synt_2: Cobalami 21.1 1.7E+02 0.0036 24.8 4.4 33 99-132 144-176 (324)
121 PF07318 DUF1464: Protein of u 20.8 5.2E+02 0.011 22.5 7.2 76 111-197 90-165 (343)
122 PRK09222 isocitrate dehydrogen 20.7 1.4E+02 0.0031 27.2 4.0 36 172-207 186-221 (482)
123 cd05015 SIS_PGI_1 Phosphogluco 20.7 1.5E+02 0.0032 22.3 3.6 30 107-136 3-33 (158)
124 PF08543 Phos_pyr_kin: Phospho 20.5 94 0.002 25.2 2.6 26 108-133 141-166 (246)
125 PRK07360 FO synthase subunit 2 20.3 3.5E+02 0.0075 23.5 6.3 24 107-130 92-115 (371)
126 cd07228 Pat_NTE_like_bacteria 20.1 91 0.002 23.7 2.4 17 115-131 159-175 (175)
No 1
>PLN03156 GDSL esterase/lipase; Provisional
Probab=100.00 E-value=8.7e-45 Score=311.44 Aligned_cols=197 Identities=24% Similarity=0.403 Sum_probs=166.9
Q ss_pred CCCCC-CCCCCCCCC-cCCCCCCCcchhhcccCCCCCCCC----cccHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhc
Q 044690 1 QSLNA-SLLSPYMDS-LSESKFNNGANFAVVGSSTLPKYV----PFSLNIQVMQFLHFKARTLELVTAGSGNFINDEGFR 74 (207)
Q Consensus 1 ~~lGl-p~~ppyl~~-~~~~~~~~G~NfA~gGa~~~~~~~----~~~l~~Qi~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (207)
|.||| |++|||+++ .++.++.+|+|||+||||+++.++ .++|..||++|+++++++.... |...+++.++
T Consensus 82 ~~lGl~p~~ppyl~~~~~~~~~~~GvNFA~agag~~~~~~~~~~~~~l~~Qv~~F~~~~~~l~~~~----g~~~~~~~~~ 157 (351)
T PLN03156 82 EAFGLKPAIPAYLDPSYNISDFATGVCFASAGTGYDNATSDVLSVIPLWKELEYYKEYQTKLRAYL----GEEKANEIIS 157 (351)
T ss_pred HHhCCCCCCCCCcCcccCchhhcccceeecCCccccCCCccccCccCHHHHHHHHHHHHHHHHHhh----ChHHHHHHHh
Confidence 46899 799999986 335689999999999999987653 4689999999999988877554 3334567789
Q ss_pred CceEEEEecCCcchhhhhc--C-CchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCC
Q 044690 75 NALYMIDIGQNDLADSFSK--N-LTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKD 151 (207)
Q Consensus 75 ~sL~~i~iG~ND~~~~~~~--~-~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~ 151 (207)
++||+||||+|||+.+++. . ....++.+|++.+++.+.+.|++||++|||||+|+|+||+||+|..+... .
T Consensus 158 ~sL~~i~iG~NDy~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~i~~Ly~~GAR~~~V~~lpplGc~P~~~~~~------~ 231 (351)
T PLN03156 158 EALYLISIGTNDFLENYYTFPGRRSQYTVSQYQDFLIGIAENFVKKLYRLGARKISLGGLPPMGCLPLERTTN------L 231 (351)
T ss_pred cCeEEEEecchhHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCHHHHhhc------C
Confidence 9999999999999865532 1 11224678999999999999999999999999999999999999876531 1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 152 LDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 152 ~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
.++.+|.+.+|.+++.||.+|+.++++|++++||++|+++|+|++++++++||++|
T Consensus 232 ~~~~~C~~~~n~~~~~~N~~L~~~l~~L~~~~pg~~i~~~D~y~~~~~ii~nP~~y 287 (351)
T PLN03156 232 MGGSECVEEYNDVALEFNGKLEKLVTKLNKELPGIKLVFSNPYDIFMQIIRNPSAY 287 (351)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEehHHHHHHHHhCcccc
Confidence 12357999999999999999999999999999999999999999999999999987
No 2
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=100.00 E-value=7.7e-44 Score=302.01 Aligned_cols=197 Identities=37% Similarity=0.598 Sum_probs=168.5
Q ss_pred CCCCCCC-CCCCCCCcCCCCCCCcchhhcccCCCCCCCC----cccHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhcC
Q 044690 1 QSLNASL-LSPYMDSLSESKFNNGANFAVVGSSTLPKYV----PFSLNIQVMQFLHFKARTLELVTAGSGNFINDEGFRN 75 (207)
Q Consensus 1 ~~lGlp~-~ppyl~~~~~~~~~~G~NfA~gGa~~~~~~~----~~~l~~Qi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (207)
+.||+|. +|||+....+.++.+|+|||+||||+.+.+. +++|..||++|++++++++... |...+++..++
T Consensus 54 ~~lgl~~~~p~~~~~~~~~~~~~G~NfA~gGA~~~~~~~~~~~~~~l~~Qv~~F~~~~~~~~~~~----g~~~~~~~~~~ 129 (315)
T cd01837 54 EALGLPLLPPPYLSPNGSSDFLTGVNFASGGAGILDSTGFLGSVISLSVQLEYFKEYKERLRALV----GEEAAADILSK 129 (315)
T ss_pred hhccCCCCCCCccCccccchhhccceecccCCccccCCcceeeeecHHHHHHHHHHHHHHHHHhh----CHHHHHHHHhC
Confidence 4689996 7777765323578999999999999998763 5799999999999988776655 44555788999
Q ss_pred ceEEEEecCCcchhhhhcCCc-hhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCC
Q 044690 76 ALYMIDIGQNDLADSFSKNLT-YVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDT 154 (207)
Q Consensus 76 sL~~i~iG~ND~~~~~~~~~~-~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~ 154 (207)
+||+||||+|||+..+....+ ..+..++++.+++++.++|++||++|||||+|+|+||+||+|.++.... .+.
T Consensus 130 sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~v~~i~~~v~~L~~~GAr~~~v~~lpplgc~P~~~~~~~------~~~ 203 (315)
T cd01837 130 SLFLISIGSNDYLNNYFANPTRQYEVEAYVPFLVSNISSAIKRLYDLGARKFVVPGLGPLGCLPSQRTLFG------GDG 203 (315)
T ss_pred CEEEEEecccccHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHhCCCcEEEecCCCCcCccHHHHhhcC------CCC
Confidence 999999999999876643322 2345789999999999999999999999999999999999999876532 123
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 155 YGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 155 ~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
.+|.+.+|++++.||.+|+++|++|++++||++|+++|+|++++++++||++|
T Consensus 204 ~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~~D~y~~~~~i~~np~~y 256 (315)
T cd01837 204 GGCLEELNELARLFNAKLKKLLAELRRELPGAKFVYADIYNALLDLIQNPAKY 256 (315)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEehhHHHHHHHhChhhc
Confidence 57999999999999999999999999999999999999999999999999987
No 3
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=100.00 E-value=4.3e-36 Score=250.83 Aligned_cols=161 Identities=22% Similarity=0.269 Sum_probs=137.2
Q ss_pred CCCCCCcchhhcccCCCCCCCC-------cccHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhcCceEEEEecCCcchh
Q 044690 17 ESKFNNGANFAVVGSSTLPKYV-------PFSLNIQVMQFLHFKARTLELVTAGSGNFINDEGFRNALYMIDIGQNDLAD 89 (207)
Q Consensus 17 ~~~~~~G~NfA~gGa~~~~~~~-------~~~l~~Qi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~i~iG~ND~~~ 89 (207)
+.++.+|+|||+|||++.+.+. .++|.+||++|++.+. ...+++||+||||+|||+.
T Consensus 54 ~~~~~~G~NfA~gGa~~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~----------------~~~~~sL~~i~iG~ND~~~ 117 (281)
T cd01847 54 TPTTPGGTNYAQGGARVGDTNNGNGAGAVLPSVTTQIANYLAAGG----------------GFDPNALYTVWIGGNDLIA 117 (281)
T ss_pred cccCCCCceeeccCccccCCCCccccccCCCCHHHHHHHHHHhcC----------------CCCCCeEEEEecChhHHHH
Confidence 4568899999999999997542 3689999999987431 2378999999999999987
Q ss_pred hhhcCCc----hhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHH
Q 044690 90 SFSKNLT----YVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAA 165 (207)
Q Consensus 90 ~~~~~~~----~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~ 165 (207)
.+....+ ..++.++++.+++.+...+++||++|||+|+|+|+||+||+|.++... ..|.+.+|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~~~GAr~ilv~~lpplgc~P~~~~~~----------~~~~~~~n~~~ 187 (281)
T cd01847 118 ALAALTTATTTQAAAVAAAATAAADLASQVKNLLDAGARYILVPNLPDVSYTPEAAGTP----------AAAAALASALS 187 (281)
T ss_pred HHhhccccccchhhHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCcccCcchhhcc----------chhHHHHHHHH
Confidence 6533221 134568999999999999999999999999999999999999887542 15889999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 166 RLFNEALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 166 ~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
..||.+|+.+|++|+++ +|+++|+|.+++++++||++|
T Consensus 188 ~~~N~~L~~~l~~l~~~----~i~~~D~~~~~~~i~~nP~~y 225 (281)
T cd01847 188 QTYNQTLQSGLNQLGAN----NIIYVDTATLLKEVVANPAAY 225 (281)
T ss_pred HHHHHHHHHHHHhccCC----eEEEEEHHHHHHHHHhChHhc
Confidence 99999999999998754 899999999999999999987
No 4
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=100.00 E-value=4.7e-34 Score=247.37 Aligned_cols=144 Identities=13% Similarity=0.119 Sum_probs=124.9
Q ss_pred CcchhhcccCCCCCCC-------CcccHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhcCceEEEEecCCcchhhhhcC
Q 044690 22 NGANFAVVGSSTLPKY-------VPFSLNIQVMQFLHFKARTLELVTAGSGNFINDEGFRNALYMIDIGQNDLADSFSKN 94 (207)
Q Consensus 22 ~G~NfA~gGa~~~~~~-------~~~~l~~Qi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~i~iG~ND~~~~~~~~ 94 (207)
+|+|||+||||++... ..++|.+||++|.. .+++||+||+|+|||+. +
T Consensus 197 ~G~NFA~GGA~~~t~~~~~~~~~~~~~L~~Qv~~~~~---------------------~~~aL~lV~iG~NDy~~-~--- 251 (408)
T PRK15381 197 EMLNFAEGGSTSASYSCFNCIGDFVSNTDRQVASYTP---------------------SHQDLAIFLLGANDYMT-L--- 251 (408)
T ss_pred CCceEeecccccccccccccccCccCCHHHHHHHHHh---------------------cCCcEEEEEeccchHHH-h---
Confidence 7999999999997421 13589999998442 15799999999999973 3
Q ss_pred CchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044690 95 LTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLH 174 (207)
Q Consensus 95 ~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~ 174 (207)
..++++.+|+++...|++||++|||||+|+|+||+||+|..+.. .+.+.+|.++..||.+|+.
T Consensus 252 -----~~~~v~~vV~~~~~~l~~Ly~lGARk~vV~nlpPlGC~P~~~~~------------~~~~~~N~~a~~fN~~L~~ 314 (408)
T PRK15381 252 -----HKDNVIMVVEQQIDDIEKIISGGVNNVLVMGIPDLSLTPYGKHS------------DEKRKLKDESIAHNALLKT 314 (408)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCCCcchhhcc------------CchHHHHHHHHHHHHHHHH
Confidence 23467889999999999999999999999999999999987631 1347899999999999999
Q ss_pred HHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 175 FCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 175 ~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
+|++|++++||++|+|+|+|+++.++++||++|
T Consensus 315 ~L~~L~~~~pg~~ivy~D~y~~~~~ii~nP~~y 347 (408)
T PRK15381 315 NVEELKEKYPQHKICYYETADAFKVIMEAASNI 347 (408)
T ss_pred HHHHHHHhCCCCEEEEEEhHHHHHHHHhCHHhc
Confidence 999999999999999999999999999999986
No 5
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=99.96 E-value=2.3e-29 Score=208.58 Aligned_cols=159 Identities=23% Similarity=0.263 Sum_probs=135.4
Q ss_pred CCcchhhcccCCCCCCCC------cccHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhcCceEEEEecCCcchhhhhcC
Q 044690 21 NNGANFAVVGSSTLPKYV------PFSLNIQVMQFLHFKARTLELVTAGSGNFINDEGFRNALYMIDIGQNDLADSFSKN 94 (207)
Q Consensus 21 ~~G~NfA~gGa~~~~~~~------~~~l~~Qi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~i~iG~ND~~~~~~~~ 94 (207)
.+|+|||+||||+..... ..+|..||++|++..+ .+..+++||+||+|+||+...+..
T Consensus 55 ~~~~N~A~~Ga~~~~~~~~~~~~~~~~l~~Qv~~f~~~~~---------------~~~~~~~l~~i~~G~ND~~~~~~~- 118 (270)
T cd01846 55 KQGYNYAVGGATAGAYNVPPYPPTLPGLSDQVAAFLAAHK---------------LRLPPDTLVAIWIGANDLLNALDL- 118 (270)
T ss_pred CCcceeEecccccCCcccCCCCCCCCCHHHHHHHHHHhcc---------------CCCCCCcEEEEEeccchhhhhccc-
Confidence 489999999999987532 4699999999998643 135688999999999999865422
Q ss_pred CchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 044690 95 LTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLH 174 (207)
Q Consensus 95 ~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~ 174 (207)
......+++.+++++.+.|++|+++|+|+|+|+++||+||+|..+..... ..+.+|.+++.||.+|++
T Consensus 119 --~~~~~~~~~~~~~~~~~~i~~l~~~g~~~i~v~~~p~~~~~P~~~~~~~~----------~~~~~~~~~~~~N~~L~~ 186 (270)
T cd01846 119 --PQNPDTLVTRAVDNLFQALQRLYAAGARNFLVLNLPDLGLTPAFQAQGDA----------VAARATALTAAYNAKLAE 186 (270)
T ss_pred --cccccccHHHHHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCcccccCCcc----------cHHHHHHHHHHHHHHHHH
Confidence 12335678899999999999999999999999999999999998754221 126899999999999999
Q ss_pred HHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 175 FCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 175 ~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
++++|++++|+++|+++|+|.++.++++||++|
T Consensus 187 ~l~~l~~~~~~~~i~~~D~~~~~~~~~~~p~~y 219 (270)
T cd01846 187 KLAELKAQHPGVNILLFDTNALFNDILDNPAAY 219 (270)
T ss_pred HHHHHHHhCCCCeEEEEEhHHHHHHHHhCHHhc
Confidence 999999999999999999999999999999876
No 6
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=99.72 E-value=9.1e-18 Score=141.67 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=122.6
Q ss_pred CCcchhhcccCCCCCCC--C-----cccHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhcCceEEEEecCCcchhhhhc
Q 044690 21 NNGANFAVVGSSTLPKY--V-----PFSLNIQVMQFLHFKARTLELVTAGSGNFINDEGFRNALYMIDIGQNDLADSFSK 93 (207)
Q Consensus 21 ~~G~NfA~gGa~~~~~~--~-----~~~l~~Qi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~i~iG~ND~~~~~~~ 93 (207)
..|.|||+|||++.... . ..++.+|+.+|+.......-. -..+.-..-...|+.+|.|+|||+..-..
T Consensus 106 a~gnd~A~gga~~~~~~~~~~i~~~~~~~~~Qv~~~l~a~~~~~v~-----~~~~~~~l~p~~l~~~~ggand~~~~~~~ 180 (370)
T COG3240 106 AGGNDLAVGGARSTEPNTGNSIGASATSLAQQVGAFLAAGQGGFVW-----PNYPAQGLDPSALYFLWGGANDYLALPML 180 (370)
T ss_pred cccccHhhhccccccccccccccccccchHHHHHHHHHhcCCcccc-----ccccccccCHHHHHHHhhcchhhhccccc
Confidence 57999999999987654 1 459999999999865421000 01122234567889999999999754211
Q ss_pred CCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHH
Q 044690 94 NLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALL 173 (207)
Q Consensus 94 ~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~ 173 (207)
+ ......+.......++..|++|.+.|||+++|+++|+++.+|...... .-......++..||..|.
T Consensus 181 ~--a~~~q~~~~~~~~~~~~~Vq~L~~AGA~~i~v~~lpDl~l~P~~~~~~-----------~~~~~a~~~t~~~Na~L~ 247 (370)
T COG3240 181 K--AAAYQQLEGSTKADQSSAVQRLIAAGARNILVMTLPDLSLTPAGKAYG-----------TEAIQASQATIAFNASLT 247 (370)
T ss_pred c--hhhhHHHhcchhhHHHHHHHHHHHhhccEEEEeecccccccccccccc-----------chHHHHHHHHHHHHHHHH
Confidence 1 111122333345678999999999999999999999999999876421 112277888999999999
Q ss_pred HHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 174 HFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 174 ~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
..|++++ .+|+.+|+|.++++++.||++|
T Consensus 248 ~~L~~~g-----~nIi~iD~~~llk~im~nPa~f 276 (370)
T COG3240 248 SQLEQLG-----GNIIRIDTYTLLKEIMTNPAEF 276 (370)
T ss_pred HHHHHhc-----CcEEEeEhHHHHHHHHhCHHhc
Confidence 9999885 8999999999999999999987
No 7
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.63 E-value=3e-15 Score=119.89 Aligned_cols=158 Identities=26% Similarity=0.401 Sum_probs=113.2
Q ss_pred CCCcchhhcccCCCCCCC----C-cccHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhcCceEEEEecCCcchhhhhcC
Q 044690 20 FNNGANFAVVGSSTLPKY----V-PFSLNIQVMQFLHFKARTLELVTAGSGNFINDEGFRNALYMIDIGQNDLADSFSKN 94 (207)
Q Consensus 20 ~~~G~NfA~gGa~~~~~~----~-~~~l~~Qi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~i~iG~ND~~~~~~~~ 94 (207)
-..+.|+|.+|+++.... . ...+..|+...... ....+.+|++|++|+||++..
T Consensus 40 ~~~~~n~a~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~lv~i~~G~ND~~~~---- 98 (234)
T PF00657_consen 40 GVDVSNYAISGATSDGDLYNLWAQVQNISQQISRLLDS-----------------KSFYDPDLVVIWIGTNDYFNN---- 98 (234)
T ss_dssp TEEEEEEE-TT--CC-HGGCCCCTCHHHHHHHHHHHHH-----------------HHHHTTSEEEEE-SHHHHSSC----
T ss_pred CCCeeccccCCCccccccchhhHHHHHHHHHhhccccc-----------------cccCCcceEEEecccCcchhh----
Confidence 345789999999975221 0 11122223221111 234577999999999998641
Q ss_pred CchhhHhhhHHHHHHHHHHHHHHHHHhCCc-----EEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHH
Q 044690 95 LTYVEVIKRIPSVITEIKNAVKTLYDHGGR-----KFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFN 169 (207)
Q Consensus 95 ~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr-----~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N 169 (207)
.........++.+++.+.+.|++|+..|+| +++++++||++|.|....... +...|.+..+..+..||
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~n 171 (234)
T PF00657_consen 99 RDSSDNNTSVEEFVENLRNAIKRLRSNGARLIIVANIVVINLPPIGCLPAWSSNNK-------DSASCIERLNAIVAAFN 171 (234)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEHHC-GGGSTTHHHTHT-------TTCTTHHHHHHHHHHHH
T ss_pred cccchhhhhHhhHhhhhhhhhhHHhccCCccccccccccccccccccccccccccc-------cccccchhhHHHHHHHH
Confidence 111123456778899999999999999999 999999999999998765432 22469999999999999
Q ss_pred HHHHHHHHHHHhhCC-CCEEEEEecchHHHHH--HHccc
Q 044690 170 EALLHFCQQMKSELE-DATIVHVDIFSVKYDL--IANST 205 (207)
Q Consensus 170 ~~L~~~l~~L~~~~~-~~~i~~~D~y~~~~~i--i~nP~ 205 (207)
..|++++.+|++.++ +.++.++|++..+.++ +.+|.
T Consensus 172 ~~l~~~~~~l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~ 210 (234)
T PF00657_consen 172 SALREVAAQLRKDYPKGANVPYFDIYSIFSDMYGIQNPE 210 (234)
T ss_dssp HHHHHHHHHHHHCHHHHCTEEEEEHHHHHHHHHHHHHGG
T ss_pred HHHHHHhhhcccccccCCceEEEEHHHHHHHhhhccCcc
Confidence 999999999988876 8999999999999998 66664
No 8
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.65 E-value=0.00029 Score=55.87 Aligned_cols=96 Identities=20% Similarity=0.230 Sum_probs=56.6
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHh------CCcEEEEecCCCCCCchhhhhhhhcc
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDH------GGRKFWIHNTGPLGCLPQKLSLIQLL 147 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~------GAr~~vv~~lpplGc~P~~~~~~~~~ 147 (207)
.-.+++|++|+||+...+ ..+ .+.....+.+.++++.+. +..+++++..||+-..+...
T Consensus 79 ~pd~vii~lGtND~~~~~--~~~-------~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~~~~~~~~~------ 143 (208)
T cd01839 79 PLDLVIIMLGTNDLKSYF--NLS-------AAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPPIRTPKGSL------ 143 (208)
T ss_pred CCCEEEEecccccccccc--CCC-------HHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCccCccccch------
Confidence 448899999999975421 111 123344444555555544 56789999888872221110
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHH
Q 044690 148 QKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKY 198 (207)
Q Consensus 148 ~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~ 198 (207)
..+....|.....||..++...++. .+.++|.+..+.
T Consensus 144 -------~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~iD~~~~~~ 180 (208)
T cd01839 144 -------AGKFAGAEEKSKGLADAYRALAEEL-------GCHFFDAGSVGS 180 (208)
T ss_pred -------hhhhccHHHHHHHHHHHHHHHHHHh-------CCCEEcHHHHhc
Confidence 0133345666778887777665543 367789877653
No 9
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.48 E-value=0.0011 Score=51.59 Aligned_cols=94 Identities=22% Similarity=0.253 Sum_probs=59.5
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHH-hCCcEEEEecCCCCCCchhhhhhhhccccCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYD-HGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDL 152 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~-~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~ 152 (207)
.-.+.+|.+|+||+... .+ .+.....+.+.++++.+ ....++++.++||+++.|.....
T Consensus 67 ~pd~Vii~~G~ND~~~~----~~-------~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~~--------- 126 (191)
T cd01836 67 RFDVAVISIGVNDVTHL----TS-------IARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQP--------- 126 (191)
T ss_pred CCCEEEEEecccCcCCC----CC-------HHHHHHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcHH---------
Confidence 44789999999998531 11 23445566666676665 35678999999999876632111
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHH
Q 044690 153 DTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVK 197 (207)
Q Consensus 153 d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~ 197 (207)
+....++....+|..+++..+ +++ .+.++|++..+
T Consensus 127 ----~~~~~~~~~~~~n~~~~~~a~----~~~--~~~~id~~~~~ 161 (191)
T cd01836 127 ----LRWLLGRRARLLNRALERLAS----EAP--RVTLLPATGPL 161 (191)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHh----cCC--CeEEEecCCcc
Confidence 122345556677776666544 333 45677888776
No 10
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.34 E-value=0.0018 Score=48.82 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=60.9
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCC-cEEEEecCCCCCCchhhhhhhhccccCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGG-RKFWIHNTGPLGCLPQKLSLIQLLQKKDL 152 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GA-r~~vv~~lpplGc~P~~~~~~~~~~~~~~ 152 (207)
.-.+++|.+|+||.... . + .+....++.+.|+++.+... -++++..++|..-.
T Consensus 40 ~pd~vvi~~G~ND~~~~----~---~----~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~--------------- 93 (157)
T cd01833 40 KPDVVLLHLGTNDLVLN----R---D----PDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDA--------------- 93 (157)
T ss_pred CCCEEEEeccCcccccC----C---C----HHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCc---------------
Confidence 45889999999998542 1 1 23455667777777776632 23566666553211
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHH
Q 044690 153 DTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKY 198 (207)
Q Consensus 153 d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~ 198 (207)
..+.....||..+++.+++.+.. +..+.++|++..+.
T Consensus 94 -------~~~~~~~~~n~~l~~~~~~~~~~--~~~v~~vd~~~~~~ 130 (157)
T cd01833 94 -------SGNARIAEYNAAIPGVVADLRTA--GSPVVLVDMSTGYT 130 (157)
T ss_pred -------chhHHHHHHHHHHHHHHHHHhcC--CCCEEEEecCCCCC
Confidence 11456789999999999887553 66799999998875
No 11
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=97.22 E-value=0.004 Score=48.04 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=62.3
Q ss_pred CceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHH-HhCCcEEEEecCCCCCCchhhhhhhhccccCCCC
Q 044690 75 NALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLY-DHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLD 153 (207)
Q Consensus 75 ~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly-~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d 153 (207)
-.+++|++|+||....... ....+....++...|+.+. .....++++++.+|....+... .
T Consensus 62 ~d~v~l~~G~ND~~~~~~~-------~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~-----~------ 123 (191)
T cd01834 62 PDVVSIMFGINDSFRGFDD-------PVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPL-----P------ 123 (191)
T ss_pred CCEEEEEeecchHhhcccc-------cccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCC-----C------
Confidence 4789999999998643210 0113345666777777775 3445678887766543321100 0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHHHHHc
Q 044690 154 TYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYDLIAN 203 (207)
Q Consensus 154 ~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~n 203 (207)
-....+.....||..+++..++ + .+.++|+|..+.+....
T Consensus 124 ---~~~~~~~~~~~~n~~l~~~a~~----~---~~~~iD~~~~~~~~~~~ 163 (191)
T cd01834 124 ---DGAEYNANLAAYADAVRELAAE----N---GVAFVDLFTPMKEAFQK 163 (191)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHH----c---CCeEEecHHHHHHHHHh
Confidence 0234566777888888776543 2 47899999999876543
No 12
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=97.07 E-value=0.0096 Score=45.98 Aligned_cols=92 Identities=17% Similarity=0.205 Sum_probs=56.7
Q ss_pred CceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCC
Q 044690 75 NALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDT 154 (207)
Q Consensus 75 ~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~ 154 (207)
-.++++.+|.||.... .+ .+.....+...++.+.+.|++ ++++..+|..-.+...
T Consensus 60 ~d~v~i~~G~ND~~~~----~~-------~~~~~~~~~~li~~~~~~~~~-~il~~~~p~~~~~~~~------------- 114 (183)
T cd04501 60 PAVVIIMGGTNDIIVN----TS-------LEMIKDNIRSMVELAEANGIK-VILASPLPVDDYPWKP------------- 114 (183)
T ss_pred CCEEEEEeccCccccC----CC-------HHHHHHHHHHHHHHHHHCCCc-EEEEeCCCcCccccch-------------
Confidence 3788999999998532 11 223455666677777777875 5556666654332210
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHHH
Q 044690 155 YGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYDL 200 (207)
Q Consensus 155 ~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~i 200 (207)
+....+.....||..++...++ . .+.++|.+..+.+.
T Consensus 115 --~~~~~~~~~~~~n~~~~~~a~~----~---~v~~vd~~~~~~~~ 151 (183)
T cd04501 115 --QWLRPANKLKSLNRWLKDYARE----N---GLLFLDFYSPLLDE 151 (183)
T ss_pred --hhcchHHHHHHHHHHHHHHHHH----c---CCCEEechhhhhcc
Confidence 1123345566788877665543 2 48899999987653
No 13
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=97.05 E-value=0.0074 Score=45.02 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=59.1
Q ss_pred hcCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHH-hCCcEEEEecCCCCCCchhhhhhhhccccCC
Q 044690 73 FRNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYD-HGGRKFWIHNTGPLGCLPQKLSLIQLLQKKD 151 (207)
Q Consensus 73 ~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~-~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~ 151 (207)
..-.++++.+|+||+.... ..+ .......+...++++.+ ....+|++++.||.++.|.
T Consensus 64 ~~~d~vil~~G~ND~~~~~--~~~-------~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~------------ 122 (187)
T cd00229 64 DKPDLVIIELGTNDLGRGG--DTS-------IDEFKANLEELLDALRERAPGAKVILITPPPPPPREG------------ 122 (187)
T ss_pred CCCCEEEEEeccccccccc--ccC-------HHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCch------------
Confidence 4668999999999986421 011 12334444555555553 6677899999998877664
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHH
Q 044690 152 LDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKY 198 (207)
Q Consensus 152 ~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~ 198 (207)
..+.....+|..+++..++.... ..+.++|++..+.
T Consensus 123 --------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~ 158 (187)
T cd00229 123 --------LLGRALPRYNEAIKAVAAENPAP---SGVDLVDLAALLG 158 (187)
T ss_pred --------hhHHHHHHHHHHHHHHHHHcCCC---cceEEEEhhhhhC
Confidence 11223556777776665554322 4578899988765
No 14
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=96.97 E-value=0.01 Score=46.73 Aligned_cols=103 Identities=21% Similarity=0.268 Sum_probs=60.7
Q ss_pred cCceEEEEecCCcchhhhhcCC---chhhHhhhHHHHHHHHHHHHHHHHHhCCc-EEEEecCC-CCCCchhhhhhhhccc
Q 044690 74 RNALYMIDIGQNDLADSFSKNL---TYVEVIKRIPSVITEIKNAVKTLYDHGGR-KFWIHNTG-PLGCLPQKLSLIQLLQ 148 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~---~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr-~~vv~~lp-plGc~P~~~~~~~~~~ 148 (207)
.-.+++|.+|+||+........ .......-......++.+.|+++.+.+.+ +++|++++ |.... . .
T Consensus 68 ~~d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~~p~~~~-----~-~--- 138 (204)
T cd04506 68 KADVITITIGGNDLMQVLEKNFLSLDVEDFKKAEETYQNNLKKIFKEIRKLNPDAPIFLVGLYNPFYVY-----F-P--- 138 (204)
T ss_pred cCCEEEEEecchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCccccc-----c-c---
Confidence 4478999999999875432110 11111223445667778888888876543 67777753 32110 0 0
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHH
Q 044690 149 KKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYD 199 (207)
Q Consensus 149 ~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ 199 (207)
-....++.+..||..+++..++ + -++.++|++..+.+
T Consensus 139 --------~~~~~~~~~~~~n~~~~~~a~~----~--~~v~~vd~~~~~~~ 175 (204)
T cd04506 139 --------NITEINDIVNDWNEASQKLASQ----Y--KNAYFVPIFDLFSD 175 (204)
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHh----C--CCeEEEehHHhhcC
Confidence 0123567788889877666532 2 24788899887664
No 15
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=96.96 E-value=0.012 Score=48.24 Aligned_cols=114 Identities=17% Similarity=0.002 Sum_probs=62.7
Q ss_pred CceEEEEecCCcchhhhhcC-----C-----------chhhHhhhHHHHHHHHHHHHHHHHHh-CCcEEEEecCCCCCCc
Q 044690 75 NALYMIDIGQNDLADSFSKN-----L-----------TYVEVIKRIPSVITEIKNAVKTLYDH-GGRKFWIHNTGPLGCL 137 (207)
Q Consensus 75 ~sL~~i~iG~ND~~~~~~~~-----~-----------~~~~~~~~~~~~v~~~~~~i~~Ly~~-GAr~~vv~~lpplGc~ 137 (207)
-.+.+|++|+||+....... . .........+.....+...|++|.+. .--+|++++.|++--.
T Consensus 81 ~dlV~i~iG~ND~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~~~ 160 (259)
T cd01823 81 TDLVTITIGGNDLGFADVVKACILTGGGSSLAQEKGAADGARDAALDEVGARLKAVLDRIRERAPNARVVVVGYPRLFPP 160 (259)
T ss_pred CCEEEEEECccccchHHHHHHHhhccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecccccccC
Confidence 58899999999985432100 0 00111233445666777777777754 3446899998775210
Q ss_pred ----hhhh-hhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHH
Q 044690 138 ----PQKL-SLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKY 198 (207)
Q Consensus 138 ----P~~~-~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~ 198 (207)
|... ...... ...+....++....+|..+++..++ +.+.++.|+|++..+.
T Consensus 161 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ln~~i~~~a~~----~~~~~v~fvD~~~~f~ 216 (259)
T cd01823 161 DGGDCDKSCSPGTPL------TPADRPELNQLVDKLNALIRRAAAD----AGDYKVRFVDTDAPFA 216 (259)
T ss_pred CCCCcccccccCCCC------CHHHHHHHHHHHHHHHHHHHHHHHH----hCCceEEEEECCCCcC
Confidence 0000 000000 0012345666777777766665443 3346788999998775
No 16
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=96.93 E-value=0.0057 Score=46.83 Aligned_cols=91 Identities=13% Similarity=0.251 Sum_probs=58.2
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHh-CCcEEEEecCCCCCCchhhhhhhhccccCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDH-GGRKFWIHNTGPLGCLPQKLSLIQLLQKKDL 152 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~-GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~ 152 (207)
.-.+.+|++|+||.... .+ .+.....+...++++.+. ...+++++++||..-.+.
T Consensus 51 ~pd~v~i~~G~ND~~~~----~~-------~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~------------- 106 (174)
T cd01841 51 NPSKVFLFLGTNDIGKE----VS-------SNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDE------------- 106 (174)
T ss_pred CCCEEEEEeccccCCCC----CC-------HHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccc-------------
Confidence 34678999999997431 11 234455666667777655 456899999888643221
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHH
Q 044690 153 DTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYD 199 (207)
Q Consensus 153 d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ 199 (207)
+....+.....||..+++..++. .+.++|+++.+.+
T Consensus 107 ----~~~~~~~~~~~~n~~l~~~a~~~-------~~~~id~~~~~~~ 142 (174)
T cd01841 107 ----IKTRSNTRIQRLNDAIKELAPEL-------GVTFIDLNDVLVD 142 (174)
T ss_pred ----cccCCHHHHHHHHHHHHHHHHHC-------CCEEEEcHHHHcC
Confidence 11223455778888887754443 2788999988753
No 17
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=96.88 E-value=0.0057 Score=46.02 Aligned_cols=95 Identities=19% Similarity=0.305 Sum_probs=59.9
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLD 153 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d 153 (207)
.-.+++|.+|+||.... . ......+.....+...++++...+ +++++.+||..-.+...
T Consensus 61 ~~d~vvi~~G~ND~~~~---~----~~~~~~~~~~~~l~~~i~~~~~~~--~vi~~~~~~~~~~~~~~------------ 119 (179)
T PF13472_consen 61 KPDLVVISFGTNDVLNG---D----ENDTSPEQYEQNLRRIIEQLRPHG--PVILVSPPPRGPDPRDP------------ 119 (179)
T ss_dssp TCSEEEEE--HHHHCTC---T----TCHHHHHHHHHHHHHHHHHHHTTS--EEEEEE-SCSSSSTTTT------------
T ss_pred CCCEEEEEccccccccc---c----cccccHHHHHHHHHHHHHhhcccC--cEEEecCCCcccccccc------------
Confidence 33689999999998652 0 112345567778888888898888 89999988765433211
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHH
Q 044690 154 TYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYD 199 (207)
Q Consensus 154 ~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ 199 (207)
|..........+|..+++..+ ++ .+.++|++..+.+
T Consensus 120 ---~~~~~~~~~~~~~~~~~~~a~----~~---~~~~id~~~~~~~ 155 (179)
T PF13472_consen 120 ---KQDYLNRRIDRYNQAIRELAK----KY---GVPFIDLFDAFDD 155 (179)
T ss_dssp ---HTTCHHHHHHHHHHHHHHHHH----HC---TEEEEEHHHHHBT
T ss_pred ---cchhhhhhHHHHHHHHHHHHH----Hc---CCEEEECHHHHcc
Confidence 122344556677777766543 33 6789999888654
No 18
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.83 E-value=0.012 Score=46.04 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=56.3
Q ss_pred cCceEEEEecCCcchhhhhcCC-chhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNL-TYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDL 152 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~-~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~ 152 (207)
.-.+.++.+|+||......... ......++.+.....+...++++.+.|++ +++++.||+.-.
T Consensus 59 ~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~-vili~~pp~~~~--------------- 122 (200)
T cd01829 59 KPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVP-VIWVGLPAMRSP--------------- 122 (200)
T ss_pred CCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCc-EEEEcCCCCCCh---------------
Confidence 3378889999999854221110 00111234455566777777777766765 777888776410
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHH
Q 044690 153 DTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYD 199 (207)
Q Consensus 153 d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ 199 (207)
..+.....+|..++...+ +. .+.++|++..+.+
T Consensus 123 -------~~~~~~~~~~~~~~~~a~----~~---~~~~id~~~~~~~ 155 (200)
T cd01829 123 -------KLSADMVYLNSLYREEVA----KA---GGEFVDVWDGFVD 155 (200)
T ss_pred -------hHhHHHHHHHHHHHHHHH----Hc---CCEEEEhhHhhcC
Confidence 123345567776665443 32 3688999887743
No 19
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.72 E-value=0.02 Score=45.21 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=36.8
Q ss_pred ceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCC
Q 044690 76 ALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLG 135 (207)
Q Consensus 76 sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplG 135 (207)
.+.+|.+|.||........ . .....++.....+...++++.+.|+ ++++.+++|..
T Consensus 76 ~~vii~~G~ND~~~~~~~~-~--~~~~~~~~~~~~l~~ii~~~~~~~~-~vil~t~~P~~ 131 (204)
T cd01830 76 RTVIILEGVNDIGASGTDF-A--AAPVTAEELIAGYRQLIRRAHARGI-KVIGATITPFE 131 (204)
T ss_pred CEEEEeccccccccccccc-c--cCCCCHHHHHHHHHHHHHHHHHCCC-eEEEecCCCCC
Confidence 5788899999986432110 0 0112345567778888888888887 57778888753
No 20
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=96.71 E-value=0.012 Score=45.63 Aligned_cols=104 Identities=17% Similarity=0.146 Sum_probs=57.5
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHH--hCCcEEEEecCCCCCCchhhhhhhhccccCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYD--HGGRKFWIHNTGPLGCLPQKLSLIQLLQKKD 151 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~--~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~ 151 (207)
.-.+++|++|+||....... .. .. .+.....+...|+++.+ .|+ ++++++.||.+-....... ...
T Consensus 63 ~pd~vii~~G~ND~~~~~~~-~~-~~----~~~~~~~~~~~i~~~~~~~~~~-~ii~~t~~~~~~~~~~~~~-~~~---- 130 (199)
T cd01838 63 QPDLVTIFFGANDAALPGQP-QH-VP----LDEYKENLRKIVSHLKSLSPKT-KVILITPPPVDEEAWEKSL-EDG---- 130 (199)
T ss_pred CceEEEEEecCccccCCCCC-Cc-cc----HHHHHHHHHHHHHHHHhhCCCC-eEEEeCCCCCCHHHHhhhh-ccc----
Confidence 56789999999998642110 00 01 23344455555566555 454 6888888876533211100 000
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHH
Q 044690 152 LDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYD 199 (207)
Q Consensus 152 ~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ 199 (207)
.......|+....||..+++..++ + .+.++|++..+.+
T Consensus 131 ---~~~~~~~~~~~~~~~~~~~~~a~~----~---~~~~iD~~~~~~~ 168 (199)
T cd01838 131 ---GSQPGRTNELLKQYAEACVEVAEE----L---GVPVIDLWTAMQE 168 (199)
T ss_pred ---cCCccccHHHHHHHHHHHHHHHHH----h---CCcEEEHHHHHHh
Confidence 012234456677888777665443 2 3778899988764
No 21
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=96.60 E-value=0.017 Score=44.52 Aligned_cols=88 Identities=18% Similarity=0.256 Sum_probs=55.0
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCC-CCchhhhhhhhccccCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPL-GCLPQKLSLIQLLQKKDL 152 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lppl-Gc~P~~~~~~~~~~~~~~ 152 (207)
.-.+++|.+|.||.... .. . ..++..++...|+++...++ +++++++||. +..|..
T Consensus 67 ~~d~vii~~G~ND~~~~---~~---~----~~~~~~~~~~~i~~i~~~~~-~vil~~~~~~~~~~~~~------------ 123 (185)
T cd01832 67 RPDLVTLLAGGNDILRP---GT---D----PDTYRADLEEAVRRLRAAGA-RVVVFTIPDPAVLEPFR------------ 123 (185)
T ss_pred CCCEEEEeccccccccC---CC---C----HHHHHHHHHHHHHHHHhCCC-EEEEecCCCccccchhH------------
Confidence 34688999999997531 11 1 23455566666777776677 4888888887 322211
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHH
Q 044690 153 DTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVK 197 (207)
Q Consensus 153 d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~ 197 (207)
...+.....+|+.|++..++. .+.++|++..+
T Consensus 124 ------~~~~~~~~~~n~~l~~~a~~~-------~v~~vd~~~~~ 155 (185)
T cd01832 124 ------RRVRARLAAYNAVIRAVAARY-------GAVHVDLWEHP 155 (185)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHc-------CCEEEecccCc
Confidence 122345677888777665432 47788888764
No 22
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=96.54 E-value=0.037 Score=46.62 Aligned_cols=147 Identities=17% Similarity=0.117 Sum_probs=79.5
Q ss_pred CcchhhcccCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhc-CceEEEEecCCcchhhhhcCCchhhH
Q 044690 22 NGANFAVVGSSTLPKYVPFSLNIQVMQFLHFKARTLELVTAGSGNFINDEGFR-NALYMIDIGQNDLADSFSKNLTYVEV 100 (207)
Q Consensus 22 ~G~NfA~gGa~~~~~~~~~~l~~Qi~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~sL~~i~iG~ND~~~~~~~~~~~~~~ 100 (207)
.+.|.|+.|+++. .|..|++...+..++ .. .-.+-. =.|.+|.||+||.... .....
T Consensus 83 ~~~N~av~Ga~s~------dL~~qa~~lv~r~~~---~~--------~i~~~~dwklVtI~IG~ND~c~~-~~~~~---- 140 (288)
T cd01824 83 SGFNVAEPGAKSE------DLPQQARLLVRRMKK---DP--------RVDFKNDWKLITIFIGGNDLCSL-CEDAN---- 140 (288)
T ss_pred cceeecccCcchh------hHHHHHHHHHHHHhh---cc--------ccccccCCcEEEEEecchhHhhh-ccccc----
Confidence 5778888888864 677788754333211 00 011111 2468889999998652 11110
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCc-EEEEecCCCCCCchhhhhhhhccccCCCCCCCch----------HHHHHHHHHHH
Q 044690 101 IKRIPSVITEIKNAVKTLYDHGGR-KFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCI----------SSYNAAARLFN 169 (207)
Q Consensus 101 ~~~~~~~v~~~~~~i~~Ly~~GAr-~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~----------~~~n~~~~~~N 169 (207)
..........+.+.++.|.+..-| .++++++|++.-++.... .+ ..-.......|. ....+....|+
T Consensus 141 ~~~~~~~~~nL~~~L~~Lr~~~P~~~V~lv~~~~~~~l~~~~~-~p-~~c~~~~~~~C~c~~~~~~~~~~~~~~~~~~y~ 218 (288)
T cd01824 141 PGSPQTFVKNLRKALDILRDEVPRAFVNLVGLLNVASLRSLTK-KP-LQCETLLAPECPCLLGPTENSYQDLKKFYKEYQ 218 (288)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCCCcEEEEEcCCCcHHHHHhcc-CC-ccccccCCCcCCCcCCCCcchHHHHHHHHHHHH
Confidence 122455667788888888888766 456666766543332210 00 000000111242 35667788888
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEe
Q 044690 170 EALLHFCQQMKSELEDATIVHVD 192 (207)
Q Consensus 170 ~~L~~~l~~L~~~~~~~~i~~~D 192 (207)
..+++..++-+-...+..+++..
T Consensus 219 ~~~~eia~~~~~~~~~f~vv~qP 241 (288)
T cd01824 219 NEVEEIVESGEFDREDFAVVVQP 241 (288)
T ss_pred HHHHHHHhcccccccCccEEeeC
Confidence 88877666532233455666533
No 23
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.49 E-value=0.041 Score=42.50 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=32.8
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCC-cEEEEecCCCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGG-RKFWIHNTGPLG 135 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GA-r~~vv~~lpplG 135 (207)
.-.+++|.+|+||..... .. . .+....++...|+++.+.+. .++++++.+|..
T Consensus 67 ~pd~Vii~~G~ND~~~~~--~~---~----~~~~~~~l~~li~~i~~~~~~~~iil~t~~p~~ 120 (188)
T cd01827 67 NPNIVIIKLGTNDAKPQN--WK---Y----KDDFKKDYETMIDSFQALPSKPKIYICYPIPAY 120 (188)
T ss_pred CCCEEEEEcccCCCCCCC--Cc---c----HHHHHHHHHHHHHHHHHHCCCCeEEEEeCCccc
Confidence 347899999999975311 00 1 12334556666777766553 477787777653
No 24
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.41 E-value=0.017 Score=43.96 Aligned_cols=86 Identities=23% Similarity=0.311 Sum_probs=53.6
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHH--hCCcEEEEecCCCCCCchhhhhhhhccccCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYD--HGGRKFWIHNTGPLGCLPQKLSLIQLLQKKD 151 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~--~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~ 151 (207)
.-.++++.+|+||.... . + .+.....+.+.|+++.+ .+ .+++++++||.+ +.
T Consensus 48 ~pd~vvl~~G~ND~~~~----~---~----~~~~~~~l~~li~~~~~~~~~-~~vi~~~~~p~~--~~------------ 101 (169)
T cd01828 48 QPKAIFIMIGINDLAQG----T---S----DEDIVANYRTILEKLRKHFPN-IKIVVQSILPVG--EL------------ 101 (169)
T ss_pred CCCEEEEEeeccCCCCC----C---C----HHHHHHHHHHHHHHHHHHCCC-CeEEEEecCCcC--cc------------
Confidence 34889999999997431 1 1 13445556666666666 44 468888888865 10
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHH
Q 044690 152 LDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKY 198 (207)
Q Consensus 152 ~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~ 198 (207)
....+.....+|..+++..++ + .+.++|+++.+.
T Consensus 102 ------~~~~~~~~~~~n~~l~~~a~~-----~--~~~~id~~~~~~ 135 (169)
T cd01828 102 ------KSIPNEQIEELNRQLAQLAQQ-----E--GVTFLDLWAVFT 135 (169)
T ss_pred ------CcCCHHHHHHHHHHHHHHHHH-----C--CCEEEechhhhc
Confidence 011234467888888776542 2 456789887764
No 25
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=96.26 E-value=0.032 Score=44.48 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=54.0
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhC-CcEEEEecCCCCCCchhhhhhhhccccCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHG-GRKFWIHNTGPLGCLPQKLSLIQLLQKKDL 152 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~G-Ar~~vv~~lpplGc~P~~~~~~~~~~~~~~ 152 (207)
.-.+++|.+|+||.... .+ .+.+...+...|+++.+.. ..++++++++|.+-.|
T Consensus 89 ~pd~VvI~~G~ND~~~~----~~-------~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~~~~-------------- 143 (214)
T cd01820 89 NPKVVVLLIGTNNIGHT----TT-------AEEIAEGILAIVEEIREKLPNAKILLLGLLPRGQNP-------------- 143 (214)
T ss_pred CCCEEEEEecccccCCC----CC-------HHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCc--------------
Confidence 34789999999997432 11 2345566777777777653 3468888888765321
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHH
Q 044690 153 DTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKY 198 (207)
Q Consensus 153 d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~ 198 (207)
...+.....+|..+++.. ++. ..+.|+|++..+.
T Consensus 144 ------~~~~~~~~~~n~~l~~~~----~~~--~~v~~vd~~~~~~ 177 (214)
T cd01820 144 ------NPLRERNAQVNRLLAVRY----DGL--PNVTFLDIDKGFV 177 (214)
T ss_pred ------hhHHHHHHHHHHHHHHHh----cCC--CCEEEEeCchhhc
Confidence 112233456676665433 222 2578889998774
No 26
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=96.23 E-value=0.025 Score=44.35 Aligned_cols=97 Identities=8% Similarity=0.056 Sum_probs=56.6
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLD 153 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d 153 (207)
.-.+++|.+|+||....... ...-++....++.+.|+++.+.|++ +++++.||.. + +..
T Consensus 65 ~pdlVii~~G~ND~~~~~~~------~~~~~~~~~~nl~~ii~~~~~~~~~-~il~tp~~~~--~-----~~~------- 123 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDPE------YTEPYTTYKEYLRRYIAEARAKGAT-PILVTPVTRR--T-----FDE------- 123 (198)
T ss_pred CCCEEEEECCCCCCCCCCCC------CCCcHHHHHHHHHHHHHHHHHCCCe-EEEECCcccc--c-----cCC-------
Confidence 34889999999997542100 0111344566677777888888886 5555544421 1 100
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHHHHH
Q 044690 154 TYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYDLIA 202 (207)
Q Consensus 154 ~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~ 202 (207)
+. ..+.....||..+++..++. .+.++|.+..+.+..+
T Consensus 124 ---~~-~~~~~~~~~~~~~~~~a~~~-------~~~~vD~~~~~~~~~~ 161 (198)
T cd01821 124 ---GG-KVEDTLGDYPAAMRELAAEE-------GVPLIDLNAASRALYE 161 (198)
T ss_pred ---CC-cccccchhHHHHHHHHHHHh-------CCCEEecHHHHHHHHH
Confidence 11 12233456777776655443 3778999998876544
No 27
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=95.66 E-value=0.15 Score=38.81 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=30.0
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNT 131 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~l 131 (207)
.-.+++|.+|+||.... .+ .......+...++++.+.|++ ++++++
T Consensus 64 ~pd~v~i~~G~ND~~~~----~~-------~~~~~~~l~~li~~~~~~~~~-vil~~~ 109 (177)
T cd01822 64 KPDLVILELGGNDGLRG----IP-------PDQTRANLRQMIETAQARGAP-VLLVGM 109 (177)
T ss_pred CCCEEEEeccCcccccC----CC-------HHHHHHHHHHHHHHHHHCCCe-EEEEec
Confidence 34689999999996421 11 223455667777777777776 555554
No 28
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=95.39 E-value=0.14 Score=38.93 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=52.6
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCC-cEEEEecCCCCCCchhhhhhhhccccCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGG-RKFWIHNTGPLGCLPQKLSLIQLLQKKDL 152 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GA-r~~vv~~lpplGc~P~~~~~~~~~~~~~~ 152 (207)
.-.++++.+|+||+.. +.+ .+....++.+.++++.+.+. .+++++.+||. | ..
T Consensus 50 ~p~~vvi~~G~ND~~~----~~~-------~~~~~~~~~~lv~~i~~~~~~~~iil~~~~p~---~--~~---------- 103 (171)
T cd04502 50 QPRRVVLYAGDNDLAS----GRT-------PEEVLRDFRELVNRIRAKLPDTPIAIISIKPS---P--AR---------- 103 (171)
T ss_pred CCCEEEEEEecCcccC----CCC-------HHHHHHHHHHHHHHHHHHCCCCcEEEEEecCC---C--cc----------
Confidence 3468999999999743 111 33456677777788877653 35777766542 1 00
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHH
Q 044690 153 DTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYD 199 (207)
Q Consensus 153 d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ 199 (207)
...+.....+|..+++..+ +. -.+.++|++..+.+
T Consensus 104 ------~~~~~~~~~~n~~~~~~a~----~~--~~v~~vD~~~~~~~ 138 (171)
T cd04502 104 ------WALRPKIRRFNALLKELAE----TR--PNLTYIDVASPMLD 138 (171)
T ss_pred ------hhhHHHHHHHHHHHHHHHh----cC--CCeEEEECcHHHhC
Confidence 0122335567766655543 22 24678999987754
No 29
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=94.71 E-value=0.21 Score=38.73 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=49.0
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLD 153 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d 153 (207)
.-.+.+|.+|+||....... ......++| ...+...++++ +.++ +++++++||..-.+
T Consensus 69 ~pd~V~i~~G~ND~~~~~~~-~~~~~~~~~----~~~~~~ii~~~-~~~~-~vi~~~~~p~~~~~--------------- 126 (193)
T cd01835 69 VPNRLVLSVGLNDTARGGRK-RPQLSARAF----LFGLNQLLEEA-KRLV-PVLVVGPTPVDEAK--------------- 126 (193)
T ss_pred CCCEEEEEecCcccccccCc-ccccCHHHH----HHHHHHHHHHH-hcCC-cEEEEeCCCccccc---------------
Confidence 45899999999998643110 001111222 22222223322 2344 57888877753210
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHH
Q 044690 154 TYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYD 199 (207)
Q Consensus 154 ~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ 199 (207)
....+.....+|..+++..++ + .+.++|++..+.+
T Consensus 127 ----~~~~~~~~~~~n~~~~~~a~~----~---~~~~vd~~~~~~~ 161 (193)
T cd01835 127 ----MPYSNRRIARLETAFAEVCLR----R---DVPFLDTFTPLLN 161 (193)
T ss_pred ----cchhhHHHHHHHHHHHHHHHH----c---CCCeEeCccchhc
Confidence 012244566777777665443 2 4678898877654
No 30
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=94.69 E-value=0.42 Score=36.67 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=52.3
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCC-cEEEEecCCCCCCchhhhhhhhccccCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGG-RKFWIHNTGPLGCLPQKLSLIQLLQKKDL 152 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GA-r~~vv~~lpplGc~P~~~~~~~~~~~~~~ 152 (207)
.-.+++|.+|+||.... .....++...+++|.+..- .++++++.||. |..... .
T Consensus 57 ~pd~vii~~G~ND~~~~--------------~~~~~~~~~~i~~i~~~~p~~~iil~~~~~~---~~~~~~---~----- 111 (177)
T cd01844 57 PADLYIIDCGPNIVGAE--------------AMVRERLGPLVKGLRETHPDTPILLVSPRYC---PDAELT---P----- 111 (177)
T ss_pred CCCEEEEEeccCCCccH--------------HHHHHHHHHHHHHHHHHCcCCCEEEEecCCC---CccccC---c-----
Confidence 34789999999996321 0456677777888887664 46777777664 221110 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHH
Q 044690 153 DTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVK 197 (207)
Q Consensus 153 d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~ 197 (207)
+.....++....+| +.++++.++ .+-++.++|.+.++
T Consensus 112 ---~~~~~~~~~~~~~~----~~~~~~~~~-~~~~v~~id~~~~~ 148 (177)
T cd01844 112 ---GRGKLTLAVRRALR----EAFEKLRAD-GVPNLYYLDGEELL 148 (177)
T ss_pred ---chhHHHHHHHHHHH----HHHHHHHhc-CCCCEEEecchhhc
Confidence 11223344444444 444444432 23478889987654
No 31
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=94.35 E-value=0.22 Score=38.24 Aligned_cols=92 Identities=11% Similarity=0.044 Sum_probs=52.2
Q ss_pred CceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHh-CCcEEEEecCCCCCCchhhhhhhhccccCCCC
Q 044690 75 NALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDH-GGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLD 153 (207)
Q Consensus 75 ~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~-GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d 153 (207)
-.+++|.+|+||.... ..+ .+....++...++++.+. ...++++++.||....+..
T Consensus 57 pd~Vii~~G~ND~~~~---~~~-------~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~------------- 113 (189)
T cd01825 57 PDLVILSYGTNEAFNK---QLN-------ASEYRQQLREFIKRLRQILPNASILLVGPPDSLQKTGA------------- 113 (189)
T ss_pred CCEEEEECCCcccccC---CCC-------HHHHHHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCC-------------
Confidence 3688999999996431 111 234556667777777763 5667888887764322210
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHH
Q 044690 154 TYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYD 199 (207)
Q Consensus 154 ~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ 199 (207)
|....+.....+|..+++. .+++ .+.++|++..+.+
T Consensus 114 ---~~~~~~~~~~~~~~~~~~~----a~~~---~v~~vd~~~~~~~ 149 (189)
T cd01825 114 ---GRWRTPPGLDAVIAAQRRV----AKEE---GIAFWDLYAAMGG 149 (189)
T ss_pred ---CCcccCCcHHHHHHHHHHH----HHHc---CCeEEeHHHHhCC
Confidence 1111122244556555444 3433 2778999887643
No 32
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=94.29 E-value=0.48 Score=40.11 Aligned_cols=55 Identities=13% Similarity=-0.010 Sum_probs=36.9
Q ss_pred ceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCc--EEEEecCCCC
Q 044690 76 ALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGR--KFWIHNTGPL 134 (207)
Q Consensus 76 sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr--~~vv~~lppl 134 (207)
.+++|++|+||.....- .. .....++..-.++.+.++.|.+..-+ +++++++|++
T Consensus 124 ~lVtI~lGgND~C~g~~---d~-~~~tp~eefr~NL~~~L~~Lr~~lP~~s~ViLvgmpd~ 180 (305)
T cd01826 124 ALVIYSMIGNDVCNGPN---DT-INHTTPEEFYENVMEALKYLDTKLPNGSHVILVGLVDG 180 (305)
T ss_pred eEEEEEeccchhhcCCC---cc-ccCcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeccch
Confidence 78888999999864310 00 01123445556777788888888755 8999988883
No 33
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=93.92 E-value=0.23 Score=38.91 Aligned_cols=44 Identities=7% Similarity=0.222 Sum_probs=30.9
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEE
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWI 128 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv 128 (207)
+-.+++|.+|+||... ..+ .+...+++...++++.+.|++.+++
T Consensus 71 ~pd~Vii~~GtND~~~----~~~-------~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 71 QPRWVLVELGGNDGLR----GFP-------PQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred CCCEEEEEeccCcCcc----CCC-------HHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 3478999999999642 111 2345666777778888889887766
No 34
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=93.85 E-value=0.61 Score=37.59 Aligned_cols=109 Identities=13% Similarity=0.088 Sum_probs=63.0
Q ss_pred cCceEEEEecCCcchhhhhcC-CchhhHhhhHHHHHHHHHHHHHHHHHhC-CcEEEEecCCCCCCchhhhhhhhccccCC
Q 044690 74 RNALYMIDIGQNDLADSFSKN-LTYVEVIKRIPSVITEIKNAVKTLYDHG-GRKFWIHNTGPLGCLPQKLSLIQLLQKKD 151 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~-~~~~~~~~~~~~~v~~~~~~i~~Ly~~G-Ar~~vv~~lpplGc~P~~~~~~~~~~~~~ 151 (207)
.-++.+|.+|+||-...--.. ..--...+|+ +++++.++-|-..- -.++++++-||+...-....... +
T Consensus 68 ~p~lvtVffGaNDs~l~~~~~~~~hvPl~Ey~----dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e-----~ 138 (245)
T KOG3035|consen 68 QPVLVTVFFGANDSCLPEPSSLGQHVPLEEYK----DNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQE-----P 138 (245)
T ss_pred CceEEEEEecCccccCCCCCCCCCccCHHHHH----HHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhcc-----c
Confidence 458899999999964321100 0001234444 44444444444333 45678888777765533332211 0
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHHH
Q 044690 152 LDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYDL 200 (207)
Q Consensus 152 ~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~i 200 (207)
+ ..-.+..|+.+..|++.+.+..+++ .+-.+|.++.+.+.
T Consensus 139 ~--~~~~~RtNe~~~~Ya~ac~~la~e~-------~l~~vdlws~~Q~~ 178 (245)
T KOG3035|consen 139 Y--VLGPERTNETVGTYAKACANLAQEI-------GLYVVDLWSKMQES 178 (245)
T ss_pred h--hccchhhhhHHHHHHHHHHHHHHHh-------CCeeeeHHhhhhhc
Confidence 0 0123358999999999998887766 35567777776654
No 35
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=93.43 E-value=0.94 Score=33.86 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=11.7
Q ss_pred cCceEEEEecCCcc
Q 044690 74 RNALYMIDIGQNDL 87 (207)
Q Consensus 74 ~~sL~~i~iG~ND~ 87 (207)
...+.+|++|+||.
T Consensus 50 ~~d~vvi~lGtNd~ 63 (150)
T cd01840 50 LRKTVVIGLGTNGP 63 (150)
T ss_pred CCCeEEEEecCCCC
Confidence 34678999999997
No 36
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=89.27 E-value=3.6 Score=31.12 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=29.7
Q ss_pred CceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCC-cEEEEec
Q 044690 75 NALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGG-RKFWIHN 130 (207)
Q Consensus 75 ~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GA-r~~vv~~ 130 (207)
-.+.+|.+|+||..... . .-.......+...|+++.+..- .+++++.
T Consensus 56 pd~vii~~G~ND~~~~~----~-----~~~~~~~~~~~~li~~i~~~~p~~~i~~~~ 103 (169)
T cd01831 56 PDLVVINLGTNDFSTGN----N-----PPGEDFTNAYVEFIEELRKRYPDAPIVLML 103 (169)
T ss_pred CCEEEEECCcCCCCCCC----C-----CCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 47899999999984311 0 1133456677777787776653 3455554
No 37
>PLN02757 sirohydrochlorine ferrochelatase
Probab=88.06 E-value=2.5 Score=32.17 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Q 044690 111 IKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVH 190 (207)
Q Consensus 111 ~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~ 190 (207)
+.+.|++|.+.|+|+|+| .|.++.... ....-+...++++++++|+.+|.+
T Consensus 60 l~eal~~l~~~g~~~vvV--------vP~FL~~G~---------------------H~~~DIp~~v~~~~~~~p~~~i~~ 110 (154)
T PLN02757 60 IKDAFGRCVEQGASRVIV--------SPFFLSPGR---------------------HWQEDIPALTAEAAKEHPGVKYLV 110 (154)
T ss_pred HHHHHHHHHHCCCCEEEE--------EEhhhcCCc---------------------chHhHHHHHHHHHHHHCCCcEEEE
Confidence 445668888899999998 476764321 112345777888899999999988
Q ss_pred Eecch---HHHHHH
Q 044690 191 VDIFS---VKYDLI 201 (207)
Q Consensus 191 ~D~y~---~~~~ii 201 (207)
...-. .+.+++
T Consensus 111 ~~pLG~~p~l~~ll 124 (154)
T PLN02757 111 TAPIGLHELMVDVV 124 (154)
T ss_pred CCCCCCCHHHHHHH
Confidence 65433 444443
No 38
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=86.95 E-value=4.3 Score=32.94 Aligned_cols=82 Identities=20% Similarity=0.315 Sum_probs=48.6
Q ss_pred EEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchH
Q 044690 80 IDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCIS 159 (207)
Q Consensus 80 i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~ 159 (207)
++.|.......|-.+.+. .. +.+..-+.+.++.|...|.|+|+++|=. . +
T Consensus 62 i~yG~s~~h~~fpGTisl-~~----~t~~~~l~di~~sl~~~Gf~~ivivngH--------------g--------G--- 111 (237)
T PF02633_consen 62 IPYGCSPHHMGFPGTISL-SP----ETLIALLRDILRSLARHGFRRIVIVNGH--------------G--------G--- 111 (237)
T ss_dssp B--BB-GCCTTSTT-BBB--H----HHHHHHHHHHHHHHHHHT--EEEEEESS--------------T--------T---
T ss_pred CccccCcccCCCCCeEEe-CH----HHHHHHHHHHHHHHHHcCCCEEEEEECC--------------H--------h---
Confidence 477887775543211111 11 2334445667788999999999999821 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHH
Q 044690 160 SYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYD 199 (207)
Q Consensus 160 ~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ 199 (207)
|. ..|...+++|++++++..+..+|.+.+..+
T Consensus 112 --N~------~~l~~~~~~l~~~~~~~~v~~~~~~~~~~~ 143 (237)
T PF02633_consen 112 --NI------AALEAAARELRQEYPGVKVFVINWWQLAED 143 (237)
T ss_dssp --HH------HHHHHHHHHHHHHGCC-EEEEEEGGGCSHC
T ss_pred --HH------HHHHHHHHHHHhhCCCcEEEEeechhccch
Confidence 11 346777788888889999999999887544
No 39
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=82.82 E-value=7.8 Score=33.99 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=34.0
Q ss_pred ceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEec
Q 044690 76 ALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHN 130 (207)
Q Consensus 76 sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~ 130 (207)
-|..||||+||+-..-. +. .+....++.--..|.++++.|.+.=-|.+|++-
T Consensus 186 KLi~IfIG~ND~c~~c~-~~--~~~~~~~~~~~~~i~~Al~~L~~nvPR~iV~lv 237 (397)
T KOG3670|consen 186 KLITIFIGTNDLCAYCE-GP--ETPPSPVDQHKRNIRKALEILRDNVPRTIVSLV 237 (397)
T ss_pred EEEEEEeccchhhhhcc-CC--CCCCCchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 57888999999865321 21 111233444455688889999988888776553
No 40
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=81.90 E-value=6 Score=33.71 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 044690 107 VITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDA 186 (207)
Q Consensus 107 ~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~ 186 (207)
-++.+.+.++++.++|.+.|++|++|+. .-+. + .+..| =|..+...++.+++++|+.
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lFgv~~~-Kd~~----------------g-s~A~~-----~~g~v~~air~iK~~~pdl 115 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPFGISHH-KDAK----------------G-SDTWD-----DNGLLARMVRTIKAAVPEM 115 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCC-CCCC----------------c-ccccC-----CCChHHHHHHHHHHHCCCe
Confidence 3567778889999999999999999642 2211 1 11111 1345677888899999997
Q ss_pred EEEEEec
Q 044690 187 TIVHVDI 193 (207)
Q Consensus 187 ~i~~~D~ 193 (207)
-+ ..|+
T Consensus 116 ~v-i~DV 121 (322)
T PRK13384 116 MV-IPDI 121 (322)
T ss_pred EE-Eeee
Confidence 64 4554
No 41
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=81.81 E-value=6.4 Score=33.42 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 044690 107 VITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDA 186 (207)
Q Consensus 107 ~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~ 186 (207)
-++.+.+.++++.++|.+.|++|++|.. ..+. + .+..|. |..+...++.+++++|+.
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~-Kd~~----------------g-s~A~~~-----~g~v~~air~iK~~~p~l 105 (314)
T cd00384 49 SVDSLVEEAEELADLGIRAVILFGIPEH-KDEI----------------G-SEAYDP-----DGIVQRAIRAIKEAVPEL 105 (314)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCC----------------c-ccccCC-----CChHHHHHHHHHHhCCCc
Confidence 3677888899999999999999999642 2211 0 111111 245567788899999987
Q ss_pred EEEEEec
Q 044690 187 TIVHVDI 193 (207)
Q Consensus 187 ~i~~~D~ 193 (207)
-+ ..|+
T Consensus 106 ~v-i~Dv 111 (314)
T cd00384 106 VV-ITDV 111 (314)
T ss_pred EE-EEee
Confidence 64 4454
No 42
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=78.45 E-value=8.8 Score=32.72 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCC-CCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 044690 107 VITEIKNAVKTLYDHGGRKFWIHNTGPL-GCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELED 185 (207)
Q Consensus 107 ~v~~~~~~i~~Ly~~GAr~~vv~~lppl-Gc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~ 185 (207)
-++.+.+.++++.++|.+.|++++++|- -.-+. | .+..|. |..+...++.+++++|+
T Consensus 52 s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~----------------g-s~A~~~-----~g~v~~air~iK~~~p~ 109 (320)
T cd04823 52 SIDELLKEAEEAVDLGIPAVALFPVTPPELKSED----------------G-SEAYNP-----DNLVCRAIRAIKEAFPE 109 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcc----------------c-ccccCC-----CChHHHHHHHHHHhCCC
Confidence 3677788889999999999999998431 12111 0 111111 34456778889999998
Q ss_pred CEEEEEec
Q 044690 186 ATIVHVDI 193 (207)
Q Consensus 186 ~~i~~~D~ 193 (207)
.-+ ..|+
T Consensus 110 l~v-i~DV 116 (320)
T cd04823 110 LGI-ITDV 116 (320)
T ss_pred cEE-EEee
Confidence 754 4454
No 43
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=78.01 E-value=9.4 Score=32.50 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCC-CchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 044690 107 VITEIKNAVKTLYDHGGRKFWIHNTGPLG-CLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELED 185 (207)
Q Consensus 107 ~v~~~~~~i~~Ly~~GAr~~vv~~lpplG-c~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~ 185 (207)
-++.+.+.++++.++|.+.|+++++|+-. .-+.. +...+++ |..+.+.++.+++++|+
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~-------gs~a~~~--------------~g~v~~air~iK~~~pd 107 (320)
T cd04824 49 GVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRS-------GSAADDE--------------DGPVIQAIKLIREEFPE 107 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCc-------cccccCC--------------CChHHHHHHHHHHhCCC
Confidence 35677788899999999999999996422 22210 0001111 23456777888899998
Q ss_pred CEEEEEec
Q 044690 186 ATIVHVDI 193 (207)
Q Consensus 186 ~~i~~~D~ 193 (207)
.-+ ..|+
T Consensus 108 l~v-i~Dv 114 (320)
T cd04824 108 LLI-ACDV 114 (320)
T ss_pred cEE-EEee
Confidence 654 4454
No 44
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=75.30 E-value=7.6 Score=26.77 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEE
Q 044690 112 KNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHV 191 (207)
Q Consensus 112 ~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~ 191 (207)
.+.+++|.+.|+++++|. |.++.... .....+...+++++.++|+.++.+.
T Consensus 47 ~~~l~~l~~~g~~~v~vv--------Plfl~~G~---------------------h~~~dip~~~~~~~~~~~~~~i~~~ 97 (101)
T cd03416 47 AEALDELAAQGATRIVVV--------PLFLLAGG---------------------HVKEDIPAALAAARARHPGVRIRYA 97 (101)
T ss_pred HHHHHHHHHcCCCEEEEE--------eeEeCCCc---------------------cccccHHHHHHHHHHHCCCeEEEec
Confidence 345678888899999885 65654321 1113445666677778899998876
Q ss_pred e
Q 044690 192 D 192 (207)
Q Consensus 192 D 192 (207)
+
T Consensus 98 ~ 98 (101)
T cd03416 98 P 98 (101)
T ss_pred C
Confidence 5
No 45
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=75.23 E-value=13 Score=31.84 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 044690 107 VITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDA 186 (207)
Q Consensus 107 ~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~ 186 (207)
-++.+.+.++++.++|.+.|+++++|.. .-+. +.+..|. |..+...++.+++++|+.
T Consensus 57 s~d~l~~~v~~~~~~Gi~av~LFgv~~~-Kd~~-----------------gs~A~~~-----~g~v~rair~iK~~~p~l 113 (323)
T PRK09283 57 SIDLLVKEAEEAVELGIPAVALFGVPEL-KDED-----------------GSEAYNP-----DGLVQRAIRAIKKAFPEL 113 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCcCCC-CCcc-----------------cccccCC-----CCHHHHHHHHHHHhCCCc
Confidence 3567778889999999999999998422 2211 1111111 344567788899999987
Q ss_pred EEEEEec
Q 044690 187 TIVHVDI 193 (207)
Q Consensus 187 ~i~~~D~ 193 (207)
-+ ..|+
T Consensus 114 ~v-i~DV 119 (323)
T PRK09283 114 GV-ITDV 119 (323)
T ss_pred EE-EEee
Confidence 64 4554
No 46
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=73.82 E-value=17 Score=28.36 Aligned_cols=14 Identities=36% Similarity=0.605 Sum_probs=12.7
Q ss_pred CceEEEEecCCcch
Q 044690 75 NALYMIDIGQNDLA 88 (207)
Q Consensus 75 ~sL~~i~iG~ND~~ 88 (207)
..+++|.+|+||..
T Consensus 78 ~d~v~i~lG~ND~~ 91 (216)
T COG2755 78 PDLVIIMLGGNDIG 91 (216)
T ss_pred CCEEEEEeeccccc
Confidence 68999999999985
No 47
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.15 E-value=60 Score=27.96 Aligned_cols=83 Identities=16% Similarity=0.164 Sum_probs=47.8
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHh---CCcEEEEecCCCCCCchhhhhhhhccccC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDH---GGRKFWIHNTGPLGCLPQKLSLIQLLQKK 150 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~---GAr~~vv~~lpplGc~P~~~~~~~~~~~~ 150 (207)
.-+..+|.+|.||.-...... ..... -.+.=..++.+-+.++.+. ---+++.+++||.-
T Consensus 177 ~~a~vVV~lGaND~q~~~~gd-~~~kf--~S~~W~~eY~kRvd~~l~ia~~~~~~V~WvGmP~~r--------------- 238 (354)
T COG2845 177 KPAAVVVMLGANDRQDFKVGD-VYEKF--RSDEWTKEYEKRVDAILKIAHTHKVPVLWVGMPPFR--------------- 238 (354)
T ss_pred CccEEEEEecCCCHHhcccCC-eeeec--CchHHHHHHHHHHHHHHHHhcccCCcEEEeeCCCcc---------------
Confidence 446778899999986432211 10000 0012233344444444433 23367888988752
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 044690 151 DLDTYGCISSYNAAARLFNEALLHFCQQMKS 181 (207)
Q Consensus 151 ~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~ 181 (207)
.+.+|.-...+|...++.++.+.-
T Consensus 239 -------~~~l~~dm~~ln~iy~~~vE~~~g 262 (354)
T COG2845 239 -------KKKLNADMVYLNKIYSKAVEKLGG 262 (354)
T ss_pred -------ccccchHHHHHHHHHHHHHHHhCC
Confidence 234666678999999998888753
No 48
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=72.76 E-value=17 Score=31.11 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Q 044690 108 ITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDAT 187 (207)
Q Consensus 108 v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~ 187 (207)
++.+.+.++++.++|.+.|+++++.+ |... |+.| .+..| =|..+...++.+++.+|+.-
T Consensus 56 id~l~~~v~~~~~~GI~~v~lFgvi~----~~~K-----------d~~g-s~a~~-----~~g~v~~air~iK~~~pdl~ 114 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGIRAVILFGVID----PSKK-----------DEEG-SEAYN-----PDGLVQRAIRAIKKAFPDLL 114 (324)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEE-S----CSC------------BSS--GGGGS-----TTSHHHHHHHHHHHHSTTSE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeeCC----cccC-----------Ccch-hcccC-----CCChHHHHHHHHHHhCCCcE
Confidence 56777888999999999999999833 1111 1111 11111 12345677888999999965
Q ss_pred EEEEec
Q 044690 188 IVHVDI 193 (207)
Q Consensus 188 i~~~D~ 193 (207)
+ ..|+
T Consensus 115 v-i~Dv 119 (324)
T PF00490_consen 115 V-ITDV 119 (324)
T ss_dssp E-EEEE
T ss_pred E-EEec
Confidence 4 5554
No 49
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=70.74 E-value=3 Score=29.04 Aligned_cols=53 Identities=11% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEec
Q 044690 114 AVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDI 193 (207)
Q Consensus 114 ~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~ 193 (207)
.+++|.+.|+++|+|+ |.++.... ....-+.+.+++++.++|+.++.+...
T Consensus 42 ~l~~l~~~g~~~ivvv--------P~fL~~G~---------------------h~~~DIp~~l~~~~~~~~~~~v~~~~p 92 (105)
T PF01903_consen 42 ALERLVAQGARRIVVV--------PYFLFPGY---------------------HVKRDIPEALAEARERHPGIEVRVAPP 92 (105)
T ss_dssp CCHHHHCCTCSEEEEE--------EESSSSSH---------------------HHHCHHHHHHCHHHHCSTTEEEEE---
T ss_pred HHHHHHHcCCCeEEEE--------eeeecCcc---------------------chHhHHHHHHHHHHhhCCceEEEECCC
Confidence 3478888999999885 66663311 111236778888999999999998765
Q ss_pred ch
Q 044690 194 FS 195 (207)
Q Consensus 194 y~ 195 (207)
..
T Consensus 93 LG 94 (105)
T PF01903_consen 93 LG 94 (105)
T ss_dssp GG
T ss_pred CC
Confidence 43
No 50
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=64.98 E-value=18 Score=30.73 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 044690 107 VITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDA 186 (207)
Q Consensus 107 ~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~ 186 (207)
-++.+.+.++++.++|.|-|++|++|+-.. ....+ ...| .-|..++..++.+++.+|+.
T Consensus 59 s~d~l~~~~~~~~~lGi~av~LFgvp~~~~----Kd~~g---s~A~--------------~~~givqravr~ik~~~p~l 117 (330)
T COG0113 59 SLDRLVEEAEELVDLGIPAVILFGVPDDSK----KDETG---SEAY--------------DPDGIVQRAVRAIKEAFPEL 117 (330)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeCCCcccc----cCccc---cccc--------------CCCChHHHHHHHHHHhCCCe
Confidence 367788888999999999999999986321 10000 0011 12345677888899999965
Q ss_pred EEEEEec
Q 044690 187 TIVHVDI 193 (207)
Q Consensus 187 ~i~~~D~ 193 (207)
- +..|+
T Consensus 118 ~-iitDv 123 (330)
T COG0113 118 V-VITDV 123 (330)
T ss_pred E-EEeee
Confidence 4 34453
No 51
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.84 E-value=13 Score=32.62 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=15.4
Q ss_pred HHHHhCCcEEEEecCCCCCCchh
Q 044690 117 TLYDHGGRKFWIHNTGPLGCLPQ 139 (207)
Q Consensus 117 ~Ly~~GAr~~vv~~lpplGc~P~ 139 (207)
.+.+.|+.+++. +-|.||.|.
T Consensus 327 e~i~~g~~nvIc--lqPFGCmPn 347 (420)
T COG3581 327 ELIESGVDNVIC--LQPFGCMPN 347 (420)
T ss_pred HHHHcCCCceEE--ecCccCCcH
Confidence 455678777665 579999994
No 52
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=64.21 E-value=3.7 Score=35.70 Aligned_cols=70 Identities=24% Similarity=0.205 Sum_probs=49.2
Q ss_pred hcCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhh
Q 044690 73 FRNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSL 143 (207)
Q Consensus 73 ~~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~ 143 (207)
..+.++.-|+|+||+...-...... ..-.-+......+.+++..++..+.-+||..+.|.++..|..+-.
T Consensus 97 ~~~~~~~~~a~gnd~A~gga~~~~~-~~~~~i~~~~~~~~~Qv~~~l~a~~~~~v~~~~~~~~l~p~~l~~ 166 (370)
T COG3240 97 DPNGLYIHWAGGNDLAVGGARSTEP-NTGNSIGASATSLAQQVGAFLAAGQGGFVWPNYPAQGLDPSALYF 166 (370)
T ss_pred CcccccCcccccccHhhhccccccc-cccccccccccchHHHHHHHHHhcCCccccccccccccCHHHHHH
Confidence 3567888999999997643211111 100122334456677788999999999999999999999988753
No 53
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=63.25 E-value=27 Score=28.86 Aligned_cols=116 Identities=8% Similarity=0.089 Sum_probs=70.9
Q ss_pred hcCceEEEEecCCcchhhh-----hcCC---c--hhhH-h-----hhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCC
Q 044690 73 FRNALYMIDIGQNDLADSF-----SKNL---T--YVEV-I-----KRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGC 136 (207)
Q Consensus 73 ~~~sL~~i~iG~ND~~~~~-----~~~~---~--~~~~-~-----~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc 136 (207)
..-+++++..|..-....- ..+. . ..+. . --++++++.+...++.|....-.-=+|+.+.|+
T Consensus 100 ~~ad~~iiTLGtaevw~~~~~g~vv~nc~k~p~~~F~~~~~~f~~ls~~ei~~~l~~~~~~l~~~nP~~kiilTVSPV-- 177 (251)
T PF08885_consen 100 EEADVFIITLGTAEVWRDRETGRVVANCHKVPAGQFDPERYEFRNLSVEEILEDLEAIIDLLRSINPDIKIILTVSPV-- 177 (251)
T ss_pred HhCCEEEEeCCcHHHheeCCCCEEEecCCCccccccchhhhhhccCCHHHHHHHHHHHHHHHHhhCCCceEEEEeccc--
Confidence 4557788899987653211 1110 0 0011 1 235677888888888888887665577788886
Q ss_pred chhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHHHHHHHcccc
Q 044690 137 LPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTK 206 (207)
Q Consensus 137 ~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~ 206 (207)
|...+.-.. -.-..|..++ +.|+..+.+|.+.++ ++.||=.|.++++-+.++.-
T Consensus 178 -rl~~T~~~~----------d~~~an~~SK---s~Lr~a~~~l~~~~~--~v~YFPSYEiv~d~lrdyrf 231 (251)
T PF08885_consen 178 -RLIATFRDR----------DGLVANQYSK---STLRAAAHELVRAFD--DVDYFPSYEIVMDELRDYRF 231 (251)
T ss_pred -hhhcccccc----------cchhhhhhhH---HHHHHHHHHHHhcCC--CceEcchHhhccCccccccc
Confidence 333321110 1123455454 468888899988764 56799999999887776643
No 54
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=63.02 E-value=32 Score=25.04 Aligned_cols=53 Identities=15% Similarity=0.084 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Q 044690 109 TEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATI 188 (207)
Q Consensus 109 ~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i 188 (207)
-.+.+.+++|.+.|.|+|+|.-+ ++.. | . .| ..|.+.+++++ +|..+|
T Consensus 56 p~~~eaL~~l~~~G~~~V~V~Pl--------~l~~------------G--------~-e~-~di~~~v~~~~--~~~~~i 103 (127)
T cd03412 56 DTPEEALAKLAADGYTEVIVQSL--------HIIP------------G--------E-EY-EKLKREVDAFK--KGFKKI 103 (127)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeC--------eeEC------------c--------H-HH-HHHHHHHHHHh--CCCceE
Confidence 45677889999999999999743 3221 0 0 22 46667777776 678888
Q ss_pred EEEec
Q 044690 189 VHVDI 193 (207)
Q Consensus 189 ~~~D~ 193 (207)
.+..-
T Consensus 104 ~~g~p 108 (127)
T cd03412 104 KLGRP 108 (127)
T ss_pred EEccC
Confidence 77643
No 55
>PF08029 HisG_C: HisG, C-terminal domain; InterPro: IPR013115 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. This entry represents the C-terminal portion of ATP phosphoribosyltransferase. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates [, ]. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. This domain is not directly involved in catalysis but appears to be responsible for the formation of hexamers induced by the binding of inhibitors to the enzyme, thus regulating activity.; GO: 0000287 magnesium ion binding, 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1Q1K_A 1H3D_A 2VD3_B 1NH7_A 1NH8_A.
Probab=61.65 E-value=8.3 Score=25.65 Aligned_cols=21 Identities=10% Similarity=0.177 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCcEEEEecC
Q 044690 111 IKNAVKTLYDHGGRKFWIHNT 131 (207)
Q Consensus 111 ~~~~i~~Ly~~GAr~~vv~~l 131 (207)
+.+.+.+|.++||+-|+|+.+
T Consensus 52 ~~~~~~~Lk~~GA~~Ilv~pi 72 (75)
T PF08029_consen 52 VWDLMDKLKAAGASDILVLPI 72 (75)
T ss_dssp HHHHHHHHHCTT-EEEEEEE-
T ss_pred HHHHHHHHHHcCCCEEEEEec
Confidence 345568999999999999865
No 56
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=59.69 E-value=37 Score=23.90 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Q 044690 111 IKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVH 190 (207)
Q Consensus 111 ~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~ 190 (207)
+.+.+++|.+.|+++++|+ |.++.... .+ ..+...+++++++ |+.++.+
T Consensus 47 ~~~~l~~l~~~g~~~i~vv--------P~fL~~G~---------------------h~-~~i~~~~~~~~~~-~~~~i~~ 95 (117)
T cd03414 47 LPEALERLRALGARRVVVL--------PYLLFTGV---------------------LM-DRIEEQVAELAAE-PGIEFVL 95 (117)
T ss_pred HHHHHHHHHHcCCCEEEEE--------echhcCCc---------------------hH-HHHHHHHHHHHhC-CCceEEE
Confidence 4456677888999999885 55543210 11 2245566777777 8888887
Q ss_pred Eec
Q 044690 191 VDI 193 (207)
Q Consensus 191 ~D~ 193 (207)
..-
T Consensus 96 ~~p 98 (117)
T cd03414 96 APP 98 (117)
T ss_pred CCC
Confidence 643
No 57
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=58.27 E-value=20 Score=30.02 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=54.1
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLD 153 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d 153 (207)
++-+|=++|-.||--..- ..+.......=+..+++.+..|.+.|.|-+++++++|-+ .. |
T Consensus 39 ~nliyPlFI~e~~dd~~p-----I~SmPg~~r~G~~rL~e~l~plv~~Gl~sViLfgvv~~~----~K-----------d 98 (340)
T KOG2794|consen 39 ANLIYPLFIHEGEDDFTP-----IDSMPGIYRLGVNRLKEELAPLVAKGLRSVILFGVVPEA----LK-----------D 98 (340)
T ss_pred hheeeeEEEecCcccccc-----cccCCchhHHHHHHHHHHHHHHHHhccceEEEecCCCcc----cc-----------C
Confidence 455666677666543111 111111122346678889999999999999999997522 11 0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEec
Q 044690 154 TYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVHVDI 193 (207)
Q Consensus 154 ~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~ 193 (207)
+ |-. .+..=|.-.-..++.||..+|+.-| +.|+
T Consensus 99 ~--~gs----~Ads~~gpvi~ai~~lr~~fPdL~i-~cDV 131 (340)
T KOG2794|consen 99 P--TGS----EADSDNGPVIRAIRLLRDRFPDLVI-ACDV 131 (340)
T ss_pred c--ccc----cccCCCCcHHHHHHHHHHhCcceEE-Eeee
Confidence 0 100 0112233445678889999999864 5664
No 58
>TIGR03455 HisG_C-term ATP phosphoribosyltransferase, C-terminal domain. This domain corresponds to the C-terminal third of the HisG protein. It is absent in many lineages.
Probab=56.54 E-value=15 Score=25.76 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCcEEEEecC
Q 044690 109 TEIKNAVKTLYDHGGRKFWIHNT 131 (207)
Q Consensus 109 ~~~~~~i~~Ly~~GAr~~vv~~l 131 (207)
..+...+.+|.++||+-|+|+.+
T Consensus 74 ~~v~~~~~~Lk~~GA~~Ilv~~i 96 (100)
T TIGR03455 74 KVVNELIDKLKAAGARDILVLPI 96 (100)
T ss_pred HHHHHHHHHHHHcCCCeEEEech
Confidence 35667789999999999999754
No 59
>KOG4079 consensus Putative mitochondrial ribosomal protein mRpS25 [Translation, ribosomal structure and biogenesis]
Probab=54.98 E-value=5.5 Score=29.68 Aligned_cols=16 Identities=25% Similarity=0.435 Sum_probs=14.2
Q ss_pred HhCCcEEEEecCCCCC
Q 044690 120 DHGGRKFWIHNTGPLG 135 (207)
Q Consensus 120 ~~GAr~~vv~~lpplG 135 (207)
..|||+||++|+|.+.
T Consensus 42 ~~GARdFVfwNipQiQ 57 (169)
T KOG4079|consen 42 QSGARDFVFWNIPQIQ 57 (169)
T ss_pred ccCccceEEecchhhc
Confidence 5799999999999865
No 60
>PRK13660 hypothetical protein; Provisional
Probab=52.37 E-value=1e+02 Score=24.10 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEec
Q 044690 104 IPSVITEIKNAVKTLYDHGGRKFWIHN 130 (207)
Q Consensus 104 ~~~~v~~~~~~i~~Ly~~GAr~~vv~~ 130 (207)
+..+-..+++.|.++++.|.+.|++-+
T Consensus 24 ~~~IK~aL~~~l~~~~e~G~~wfi~gg 50 (182)
T PRK13660 24 IKYIKKAIKRKLIALLEEGLEWVIISG 50 (182)
T ss_pred hHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 344556788999999999999888754
No 61
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=51.49 E-value=43 Score=26.07 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEec
Q 044690 104 IPSVITEIKNAVKTLYDHGGRKFWIHN 130 (207)
Q Consensus 104 ~~~~v~~~~~~i~~Ly~~GAr~~vv~~ 130 (207)
+..+-..+.+.|.+|++.|.+.|+.-+
T Consensus 24 ~~~ik~~L~~~i~~lie~G~~~fi~Gg 50 (177)
T PF06908_consen 24 IQVIKKALKKQIIELIEEGVRWFITGG 50 (177)
T ss_dssp HHHHHHHHHHHHHHHHTTT--EEEE--
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 456677889999999999999887754
No 62
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=48.02 E-value=41 Score=24.78 Aligned_cols=27 Identities=22% Similarity=0.114 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 044690 158 ISSYNAAARLFNEALLHFCQQMKSELE 184 (207)
Q Consensus 158 ~~~~n~~~~~~N~~L~~~l~~L~~~~~ 184 (207)
.+..+.++..||..|.+.|.++.++|.
T Consensus 70 e~q~e~lt~rF~~aL~~~L~~yq~~H~ 96 (128)
T PRK13717 70 EAQSKALSARFNTALEASLQAWQQKHH 96 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466788999999999999999998874
No 63
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=47.90 E-value=1.3e+02 Score=25.63 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEe
Q 044690 106 SVITEIKNAVKTLYDHGGRKFWIH 129 (207)
Q Consensus 106 ~~v~~~~~~i~~Ly~~GAr~~vv~ 129 (207)
.-+..+.+-++.|+++|.|.|-|+
T Consensus 88 ~d~~~L~~K~~ql~~lGvr~Fail 111 (306)
T PF07555_consen 88 EDFEALKAKFDQLYDLGVRSFAIL 111 (306)
T ss_dssp HHHHHHHHHHHHHHCTT--EEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEe
Confidence 345667777899999999999776
No 64
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=42.80 E-value=94 Score=26.75 Aligned_cols=31 Identities=13% Similarity=-0.041 Sum_probs=26.4
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHhCCcEEEEe
Q 044690 99 EVIKRIPSVITEIKNAVKTLYDHGGRKFWIH 129 (207)
Q Consensus 99 ~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~ 129 (207)
+.++++..+...+.+.++.|+++|+|.+-+=
T Consensus 146 ~~~el~~dlA~al~~Ei~~L~~aG~~~IQiD 176 (339)
T PRK09121 146 SREKLAWEFAKILNQEAKELEAAGVDIIQFD 176 (339)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEec
Confidence 3467888999999999999999999987553
No 65
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=41.91 E-value=46 Score=28.14 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=29.4
Q ss_pred cCceEEEEecCCcchhhhhc-CCc---hh-hHhhhHHHHHHHHHHHHHHHHHhCCcEEEEec
Q 044690 74 RNALYMIDIGQNDLADSFSK-NLT---YV-EVIKRIPSVITEIKNAVKTLYDHGGRKFWIHN 130 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~-~~~---~~-~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~ 130 (207)
.+-+=+++||+||+..+.+. .+. .. -.+.+-+.+..-+...++.-.+.| +.+-|.|
T Consensus 195 ~~~~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g-~~vsvCG 255 (293)
T PF02896_consen 195 AKEVDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAG-KPVSVCG 255 (293)
T ss_dssp HTTSSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT--EEEEES
T ss_pred HHHCCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcC-cEEEEec
Confidence 34456889999999865442 111 10 112334555556666556555555 4444443
No 66
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=41.18 E-value=41 Score=27.82 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEec
Q 044690 106 SVITEIKNAVKTLYDHGGRKFWIHN 130 (207)
Q Consensus 106 ~~v~~~~~~i~~Ly~~GAr~~vv~~ 130 (207)
.++.-+....+.|+..|.|||+++|
T Consensus 87 t~~~~~~~~~~Sl~~~Gfrk~v~vN 111 (250)
T COG1402 87 TLIALLVELVESLARHGFRKFVIVN 111 (250)
T ss_pred HHHHHHHHHHHHHHhcCccEEEEEe
Confidence 3455566677899999999999998
No 67
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=40.65 E-value=1.1e+02 Score=24.25 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCcEEEEecC
Q 044690 110 EIKNAVKTLYDHGGRKFWIHNT 131 (207)
Q Consensus 110 ~~~~~i~~Ly~~GAr~~vv~~l 131 (207)
++..+++.|.+.|++++.+..+
T Consensus 137 Tl~~ai~~L~~~G~~~I~v~~l 158 (207)
T TIGR01091 137 TMIAALDLLKKRGAKKIKVLSI 158 (207)
T ss_pred HHHHHHHHHHHcCCCEEEEEEE
Confidence 5677889999999999888765
No 68
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=39.40 E-value=29 Score=30.17 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 172 LLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 172 L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
.++..++..++||++++-+.=+-+..+.++.+|.+|
T Consensus 200 f~~~~~eva~~yp~v~~~~~~vD~~~~~lv~~P~~f 235 (352)
T TIGR02089 200 WDEVFAEVAAEYPDVEWDSYHIDALAARFVLKPETF 235 (352)
T ss_pred HHHHHHHHHhhCCCceEeeehHHHHHHHHhcChhhC
Confidence 345566677889998887777778889999999876
No 69
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=38.16 E-value=51 Score=28.78 Aligned_cols=37 Identities=8% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
..++.+++..++||++.+-..=+-++.+.++.+|.+|
T Consensus 204 lf~~~~~eva~eyPdV~~~~~~VDa~~~~Lv~~P~~f 240 (360)
T PLN00123 204 LFLESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQF 240 (360)
T ss_pred HHHHHHHHHHhhCCCceEeeeeHHHHHHHHhhCcccC
Confidence 3345566677789999888888888999999999987
No 70
>PRK08194 tartrate dehydrogenase; Provisional
Probab=37.70 E-value=34 Score=29.78 Aligned_cols=36 Identities=6% Similarity=0.068 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 172 LLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 172 L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
.++.+++..++||++.+-..-+-+..+.++.||.+|
T Consensus 197 f~~~~~eva~~yp~V~~~~~~vDa~~~~Lv~~P~~f 232 (352)
T PRK08194 197 WDEVFQEVGKDYPEIETDSQHIDALAAFFVTRPEEF 232 (352)
T ss_pred HHHHHHHHHhhCCCceeeehhHHHHHHHHhhChhhC
Confidence 344556677889999888777778889999999886
No 71
>PF08331 DUF1730: Domain of unknown function (DUF1730); InterPro: IPR013542 This domain of unknown function occurs in iron-sulphur cluster-binding proteins together with the 4Fe-4S binding domain (IPR001450 from INTERPRO).
Probab=36.96 E-value=1.2e+02 Score=19.89 Aligned_cols=67 Identities=15% Similarity=0.108 Sum_probs=34.0
Q ss_pred HhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHH---HHHHHHHHHHHHHHHHHHhhCCCCE-EEEEec
Q 044690 120 DHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYN---AAARLFNEALLHFCQQMKSELEDAT-IVHVDI 193 (207)
Q Consensus 120 ~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n---~~~~~~N~~L~~~l~~L~~~~~~~~-i~~~D~ 193 (207)
=-|||.++|+.++=..-.|....... ...+....+- ..-...-++|+.+.+.|+++.|+.+ -+++|+
T Consensus 8 ~p~arSvIv~a~~Y~~~~~~~~~~~~-------~~~g~iarYA~G~DYH~vlk~~L~~l~~~i~~~~~~~~~r~~VDT 78 (78)
T PF08331_consen 8 LPGARSVIVLAFPYYPEPPPPPPPPG-------PGRGRIARYAWGRDYHKVLKKKLEQLAEWIRELGPDFEYRIFVDT 78 (78)
T ss_pred CCCCcEEEEEEccCCCccccccccCC-------CCCeeEeehhccCChHHHHHHHHHHHHHHHHHHCCCCCeEEeecC
Confidence 35899999998764431110000000 0112222222 2223334677777778888888863 345663
No 72
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=36.94 E-value=77 Score=22.83 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 044690 158 ISSYNAAARLFNEALLHFCQQMKSELE 184 (207)
Q Consensus 158 ~~~~n~~~~~~N~~L~~~l~~L~~~~~ 184 (207)
.+..+.+...||..|.+.|.+++++|.
T Consensus 57 e~q~~~~~~rF~~~L~~~L~~yq~~H~ 83 (112)
T TIGR02744 57 EAQQKALLGRFNALLEAELQAWQAQHH 83 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466788999999999999999998874
No 73
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=36.45 E-value=57 Score=28.45 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=28.7
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCC
Q 044690 99 EVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPL 134 (207)
Q Consensus 99 ~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lppl 134 (207)
+.++++..++..+...++.|+++|+|.|-+= =|.+
T Consensus 160 ~~~~~~~dlA~al~~Ei~~L~~aG~~~IQiD-ep~l 194 (368)
T PRK06520 160 DLDDYFDDLAKTWRDAIKAFYDAGCRYLQLD-DTVW 194 (368)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEec-Ccch
Confidence 3568889999999999999999999987554 3554
No 74
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=36.15 E-value=36 Score=29.69 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 170 EALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 170 ~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
...++..+++.++||++.+-+.=+-++.+.++.+|.+|
T Consensus 199 glf~~~~~eva~eyp~i~~~~~~vDa~~~~lv~~P~~f 236 (358)
T PRK00772 199 RLWREVVTEVAKEYPDVELSHMYVDNAAMQLVRNPKQF 236 (358)
T ss_pred hHHHHHHHHHHhHCCCceEEEEeHHHHHHHHhhCcccC
Confidence 44455666777889999888888888899999999876
No 75
>PRK03437 3-isopropylmalate dehydrogenase; Provisional
Probab=35.77 E-value=44 Score=28.98 Aligned_cols=36 Identities=8% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 172 LLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 172 L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
.++..++..++||++++-..-+-+..+.++.+|.+|
T Consensus 197 f~~~~~eva~~ypdV~~~~~~vDa~~~~Lv~~P~~f 232 (344)
T PRK03437 197 WQRTVDEVAAEYPDVTVDYQHVDAATIFMVTDPSRF 232 (344)
T ss_pred HHHHHHHHHhhCCCceEeehhHHHHHHHHhcCcccC
Confidence 345556677889998887777777889999999886
No 76
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.75 E-value=72 Score=28.97 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCEEEEEecch
Q 044690 167 LFNEALLHFCQQMKSELEDATIVHVDIFS 195 (207)
Q Consensus 167 ~~N~~L~~~l~~L~~~~~~~~i~~~D~y~ 195 (207)
.|+..+.++++++++++|+..++-.|+-+
T Consensus 250 ~~~~~~~~~i~~ik~~~p~~~v~agnv~t 278 (479)
T PRK07807 250 GHQEKMLEALRAVRALDPGVPIVAGNVVT 278 (479)
T ss_pred CccHHHHHHHHHHHHHCCCCeEEeeccCC
Confidence 45778889999999999999988867644
No 77
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=34.62 E-value=67 Score=27.76 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 172 LLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 172 L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
.++.+++..++||++.+-..=+-+..+.++.+|.+|
T Consensus 184 f~~~~~eva~~yP~V~~~~~~vDa~~~~lv~~P~~f 219 (334)
T PRK08997 184 FLKVAREVALRYPDIEFEEMIVDATCMQLVMNPEQF 219 (334)
T ss_pred HHHHHHHHHhhCCCeEEEeeeHHHHHHHHhhCcccC
Confidence 344556667789999887766667788999999987
No 78
>PRK06233 hypothetical protein; Provisional
Probab=34.58 E-value=63 Score=28.17 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=28.5
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCC
Q 044690 99 EVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPL 134 (207)
Q Consensus 99 ~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lppl 134 (207)
+.++++..++..+...++.||++|+|.+-+=. |.+
T Consensus 161 ~~eel~~dlA~a~~~Ei~~L~~aG~~~IQiDe-P~~ 195 (372)
T PRK06233 161 SWDDYLDDLAQAYHDTIQHFYDLGARYIQLDD-TTW 195 (372)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcC-CCH
Confidence 34678899999999999999999999876643 443
No 79
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=34.25 E-value=96 Score=28.82 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.4
Q ss_pred ceEEEEecCCcchhh
Q 044690 76 ALYMIDIGQNDLADS 90 (207)
Q Consensus 76 sL~~i~iG~ND~~~~ 90 (207)
-+=+++||.||+..+
T Consensus 444 ~vDf~sIGtnDLsqy 458 (565)
T TIGR01417 444 EVDFFSIGTNDLTQY 458 (565)
T ss_pred hCCEEEEChhHHHHH
Confidence 566889999999764
No 80
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=33.76 E-value=96 Score=24.88 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEecchHH
Q 044690 160 SYNAAARLFNEALLHFCQQMKSELEDATIVHVDIFSVK 197 (207)
Q Consensus 160 ~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y~~~ 197 (207)
........|=..|..+++++++..|+++|++.-.+.++
T Consensus 121 ~~~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~ 158 (259)
T cd01823 121 ARDAALDEVGARLKAVLDRIRERAPNARVVVVGYPRLF 158 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEecccccc
Confidence 33445667888999999999999999999888776554
No 81
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=33.31 E-value=52 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCCcEEEEe
Q 044690 112 KNAVKTLYDHGGRKFWIH 129 (207)
Q Consensus 112 ~~~i~~Ly~~GAr~~vv~ 129 (207)
.+.+++|.+.|+|+|+++
T Consensus 45 ~~~l~~l~~~G~~~i~lv 62 (103)
T cd03413 45 DDVLAKLKKAGIKKVTLM 62 (103)
T ss_pred HHHHHHHHHcCCCEEEEE
Confidence 445678899999999875
No 82
>cd03411 Ferrochelatase_N Ferrochelatase, N-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=33.12 E-value=55 Score=24.73 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCC
Q 044690 111 IKNAVKTLYDHGGRKFWIHNTGPL 134 (207)
Q Consensus 111 ~~~~i~~Ly~~GAr~~vv~~lppl 134 (207)
+.+.|++|.+.|+++++|+-+-|.
T Consensus 101 i~~~l~~l~~~g~~~iivlPl~P~ 124 (159)
T cd03411 101 IEEALEELKADGVDRIVVLPLYPQ 124 (159)
T ss_pred HHHHHHHHHHcCCCEEEEEECCcc
Confidence 345678899999999999987664
No 83
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=32.86 E-value=65 Score=27.79 Aligned_cols=37 Identities=16% Similarity=0.386 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
..++.+++..++||++.+-+.-+-+..+.++.+|..|
T Consensus 181 lf~~~~~eva~~yp~v~~~~~~vDa~~~~lv~~P~~f 217 (333)
T TIGR00175 181 LFLNVCREVAKEYPDITFESMIVDNTCMQLVSRPSQF 217 (333)
T ss_pred HHHHHHHHHHHHCCCCeeeeeeHHHHHHHHhcCcccc
Confidence 3445566677789999888877888899999999876
No 84
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.63 E-value=75 Score=22.42 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchHHHHH
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSVKYDL 200 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~~~~i 200 (207)
.+.-.+.+|..+||++.|+.+|+.. ..++
T Consensus 38 ~i~P~~~~La~~y~~v~Flkvdvde-~~~~ 66 (106)
T KOG0907|consen 38 AIAPKFEKLAEKYPDVVFLKVDVDE-LEEV 66 (106)
T ss_pred hhhhHHHHHHHHCCCCEEEEEeccc-CHhH
Confidence 3445788899999999999999987 4444
No 85
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=32.33 E-value=1.8e+02 Score=24.35 Aligned_cols=45 Identities=4% Similarity=0.093 Sum_probs=34.2
Q ss_pred cCceEEEEecCCcchhhhhcCCchhhHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 044690 74 RNALYMIDIGQNDLADSFSKNLTYVEVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGP 133 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpp 133 (207)
++..++|-+|+|=+.. +..+..+...|.-|+..|.|-++|.+-.|
T Consensus 34 ~~~f~VIK~GG~~~~~---------------~~~~~~l~~dla~L~~lGl~~VlVHGggp 78 (271)
T cd04236 34 WPAFAVLEVDHSVFRS---------------LEMVQSLSFGLAFLQRMDMKLLVVMGLSA 78 (271)
T ss_pred CCCEEEEEEChhhhcC---------------chhHHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 5678888999886421 12455566777899999999999999876
No 86
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=31.46 E-value=56 Score=23.87 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCCcEEEEe
Q 044690 111 IKNAVKTLYDHGGRKFWIH 129 (207)
Q Consensus 111 ~~~~i~~Ly~~GAr~~vv~ 129 (207)
+.+.+++|.+.|+++++|+
T Consensus 46 l~~~l~~l~~~G~~~ivVv 64 (125)
T cd03415 46 WRDLLNELLSEGYGHIIIA 64 (125)
T ss_pred HHHHHHHHHHCCCCEEEEe
Confidence 4566789999999999997
No 87
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=31.33 E-value=83 Score=27.35 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
..++..++..++||++++-..-+-+..+.++.+|.+|
T Consensus 197 lf~~~~~eva~~yP~I~~~~~~vDa~~~~Lv~~P~~f 233 (349)
T TIGR00169 197 LWRKTVEEIAKEYPDVELEHQYIDNAAMQLVKSPTQF 233 (349)
T ss_pred HHHHHHHHHHhhCCCceEEeeeHHHHHHHHHhCccCc
Confidence 3445566677789999888877788889999999876
No 88
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=31.24 E-value=75 Score=27.91 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
..++.+++..++||++.+-..-+-+..+.++.+|.+|
T Consensus 220 lf~e~~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~f 256 (372)
T PLN00118 220 LFLKCCREVAEKYPEIVYEEVIIDNCCMMLVKNPALF 256 (372)
T ss_pred HHHHHHHHHHhhCCCceEEeeeHHHHHHHhccCcccC
Confidence 4455666777889998877777777889999999876
No 89
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=31.08 E-value=1.8e+02 Score=24.99 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCcEEEEecCCCC
Q 044690 112 KNAVKTLYDHGGRKFWIHNTGPL 134 (207)
Q Consensus 112 ~~~i~~Ly~~GAr~~vv~~lppl 134 (207)
.+.+++|.+.|.+++|++-+-|.
T Consensus 105 ~~~v~~l~~~gv~~iv~~pLyPq 127 (320)
T COG0276 105 EEAVEELKKDGVERIVVLPLYPQ 127 (320)
T ss_pred HHHHHHHHHcCCCeEEEEECCcc
Confidence 45678899999999999887663
No 90
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=30.01 E-value=60 Score=23.92 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCcEEEEe
Q 044690 113 NAVKTLYDHGGRKFWIH 129 (207)
Q Consensus 113 ~~i~~Ly~~GAr~~vv~ 129 (207)
+.|++|.+.|+|+++|+
T Consensus 81 ~~l~~l~~~G~~~i~v~ 97 (135)
T cd00419 81 DALEELAKEGVKNVVVV 97 (135)
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 45688999999999996
No 91
>COG1903 CbiD Cobalamin biosynthesis protein CbiD [Coenzyme metabolism]
Probab=29.97 E-value=3.3e+02 Score=23.95 Aligned_cols=87 Identities=14% Similarity=0.005 Sum_probs=52.2
Q ss_pred cccCCCCCCCC---cccHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhcCceEEEEecCCc--chhhhhcCCchhhHhh
Q 044690 28 VVGSSTLPKYV---PFSLNIQVMQFLHFKARTLELVTAGSGNFINDEGFRNALYMIDIGQND--LADSFSKNLTYVEVIK 102 (207)
Q Consensus 28 ~gGa~~~~~~~---~~~l~~Qi~~f~~~~~~~~~~~~~~~~~~~~~~~~~~sL~~i~iG~ND--~~~~~~~~~~~~~~~~ 102 (207)
+||-.++-+|+ |+|-+.++..+....+..+. . .-.-.++..|.+- |...++.. ...
T Consensus 167 vGGISILGTTGIv~P~S~~a~~~si~~~l~~~r~-------------~-~~~~iv~~~Gn~g~~~a~~~~~~-----~~~ 227 (367)
T COG1903 167 VGGISILGTTGIVEPMSEEAYLASIRSELDVARA-------------A-GLDHVVFCPGNTGEDYARKLFIL-----PEQ 227 (367)
T ss_pred ccceEeecCCcccCcCChHHHHHHHHHHHHHHHh-------------c-CCcEEEEccChhHHHHHHHhcCC-----chH
Confidence 47777887776 78888888877765543221 0 1122344566443 33222211 112
Q ss_pred hHHHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 044690 103 RIPSVITEIKNAVKTLYDHGGRKFWIHNTGP 133 (207)
Q Consensus 103 ~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpp 133 (207)
.+-.+-+.+-..|+...++|.+++++++.|-
T Consensus 228 ~~v~~~n~vG~~l~~a~~~~~~~i~i~G~pG 258 (367)
T COG1903 228 AIVKMGNFVGSMLKEARELGVKEILIFGHPG 258 (367)
T ss_pred HHhhHHHHHHHHHHHHHhcCCCEEEEEcChH
Confidence 2334455566677888888999999999873
No 92
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=28.18 E-value=78 Score=29.40 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=27.5
Q ss_pred hhcCceEEEEecCCcchhhhhc---CC-chh-hHhhhHHHHHHHHHHHHHHHHHhC
Q 044690 72 GFRNALYMIDIGQNDLADSFSK---NL-TYV-EVIKRIPSVITEIKNAVKTLYDHG 122 (207)
Q Consensus 72 ~~~~sL~~i~iG~ND~~~~~~~---~~-~~~-~~~~~~~~~v~~~~~~i~~Ly~~G 122 (207)
.+.+-+=+++||+||+..+.+. .+ ... -.+.+-|.++.-|...|+.=+..|
T Consensus 442 ~lakevDFfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~g 497 (574)
T COG1080 442 QLAKEVDFFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHG 497 (574)
T ss_pred HHHHhCCEeeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 3455666899999999864432 11 110 112334555555555555555444
No 93
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=28.00 E-value=1.9e+02 Score=22.15 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEEEecc
Q 044690 163 AAARLFNEALLHFCQQMKSELEDATIVHVDIF 194 (207)
Q Consensus 163 ~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y 194 (207)
.....|=..|..+++.+++..|+++|+++..+
T Consensus 99 ~~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~ 130 (204)
T cd04506 99 KAEETYQNNLKKIFKEIRKLNPDAPIFLVGLY 130 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCeEEEEecC
Confidence 34567888999999999999999998887654
No 94
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=27.58 E-value=1.9e+02 Score=26.46 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEE
Q 044690 109 TEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATI 188 (207)
Q Consensus 109 ~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i 188 (207)
..+..-|+.||+.|+|+|=+ ....|+=++... .. ++-....|- ..|+++....|..-|+.+.
T Consensus 218 e~Vv~EVkaLY~~GvrhFRl---GRQ~difsy~~~---~~------g~e~P~PnP------ealekL~~Gir~~AP~l~t 279 (560)
T COG1031 218 EDVVEEVKALYRAGVRHFRL---GRQADIFSYGAD---DN------GGEVPRPNP------EALEKLFRGIRNVAPNLKT 279 (560)
T ss_pred HHHHHHHHHHHHhccceeee---ccccceeeeccc---cc------CCCCCCCCH------HHHHHHHHHHHhhCCCCee
Confidence 44556679999999999954 333343333221 11 111222232 3344555556666689999
Q ss_pred EEEecch
Q 044690 189 VHVDIFS 195 (207)
Q Consensus 189 ~~~D~y~ 195 (207)
+.+|--+
T Consensus 280 LHiDNaN 286 (560)
T COG1031 280 LHIDNAN 286 (560)
T ss_pred eeecCCC
Confidence 9888644
No 95
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=27.28 E-value=81 Score=28.07 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEecch
Q 044690 170 EALLHFCQQMKSELEDATIVHVDIFS 195 (207)
Q Consensus 170 ~~L~~~l~~L~~~~~~~~i~~~D~y~ 195 (207)
..+.+.+++|+...|.+.++|+|+|.
T Consensus 158 g~~~~R~~~L~~~~~~ld~iYvDV~~ 183 (425)
T PF12905_consen 158 GARFKRFDQLKETVPNLDFIYVDVWY 183 (425)
T ss_dssp THHHHHHHHHHHHTTT--EEEEESTT
T ss_pred chHHHHHHHHhccccCCCeEEEEecc
Confidence 35666678888888999999999984
No 96
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=27.08 E-value=99 Score=26.67 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 170 EALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 170 ~~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
...++.+++..++||++.+-..=+-++.+.++.+|.+|
T Consensus 179 glf~e~~~eva~~yp~i~~~~~~vDa~~~~lv~~P~~f 216 (330)
T PRK14025 179 GLFKKTFYEVAKEYPDIKAEDYYVDAMNMYIITRPQTF 216 (330)
T ss_pred HHHHHHHHHHHhhCCCeEEEeeeHHHHHHHHhcCcccC
Confidence 33455566677789998877777777889999999876
No 97
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=27.06 E-value=44 Score=31.28 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=15.4
Q ss_pred hcCceEEEEecCCcchhhhh
Q 044690 73 FRNALYMIDIGQNDLADSFS 92 (207)
Q Consensus 73 ~~~sL~~i~iG~ND~~~~~~ 92 (207)
+.+.+=+|++|+||...+.+
T Consensus 616 L~~~vDFvSVGtNDL~Qyll 635 (756)
T COG3605 616 LAKRVDFVSVGTNDLTQYLL 635 (756)
T ss_pred HHhhCCEEEecchHHHHHHH
Confidence 45677789999999976543
No 98
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=27.05 E-value=2.4e+02 Score=22.10 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchH
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSV 196 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~ 196 (207)
.|...+++|.++||.++|+-+|+-..
T Consensus 119 ~m~~~l~~LA~k~~~vkFvkI~ad~~ 144 (192)
T cd02988 119 LLNQHLSELARKFPDTKFVKIISTQC 144 (192)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEhHHh
Confidence 44566677788899999999998653
No 99
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=26.45 E-value=1.1e+02 Score=21.42 Aligned_cols=26 Identities=4% Similarity=0.066 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchH
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSV 196 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~ 196 (207)
.+...+++|.+++|+.+++.+|....
T Consensus 39 ~~~p~l~~la~~~~~i~f~~Vd~~~~ 64 (113)
T cd02989 39 IMDKHLEILAKKHLETKFIKVNAEKA 64 (113)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcccC
Confidence 34455666767789999999998874
No 100
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=26.16 E-value=90 Score=27.04 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=28.9
Q ss_pred HHHHHHHHHh-hCCCCEEEEEecchHHHHHHHccccC
Q 044690 172 LLHFCQQMKS-ELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 172 L~~~l~~L~~-~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
.++..++..+ ++|++.+-..-+-+..+.++.+|..|
T Consensus 196 f~~~~~eva~~~yp~I~~~~~~vD~~~~~Lv~~P~~f 232 (348)
T PF00180_consen 196 FREVFQEVAKQEYPDIEVEHMLVDAAAMQLVKNPEQF 232 (348)
T ss_dssp HHHHHHHHHHHTHTTSEEEEEEHHHHHHHHHHSGGGE
T ss_pred HHHHHHHHHHhhcceeEeeeeechhhhheeecCCcce
Confidence 3445555655 89999999988899999999999875
No 101
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=25.47 E-value=1.1e+02 Score=20.59 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCcEEEEecCCCC
Q 044690 113 NAVKTLYDHGGRKFWIHNTGPL 134 (207)
Q Consensus 113 ~~i~~Ly~~GAr~~vv~~lppl 134 (207)
+.+++|.+.|.++++|+=+-+.
T Consensus 49 ~~l~~l~~~g~~~vvvvPl~~~ 70 (101)
T cd03409 49 EAIRELAEEGYQRVVIVPLAPV 70 (101)
T ss_pred HHHHHHHHcCCCeEEEEeCccc
Confidence 4568888999999999755443
No 102
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed
Probab=25.20 E-value=81 Score=26.28 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCcEEEEecC
Q 044690 110 EIKNAVKTLYDHGGRKFWIHNT 131 (207)
Q Consensus 110 ~~~~~i~~Ly~~GAr~~vv~~l 131 (207)
.+.+.+.+|.++||+-|+|..+
T Consensus 261 ~~~~~~~~l~~~ga~~i~~~~i 282 (287)
T PRK00489 261 LVWELMDKLKALGARGILVLPI 282 (287)
T ss_pred HHHHHHHHHHHcCCCeEEEech
Confidence 4677889999999999999754
No 103
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=25.01 E-value=2.6e+02 Score=24.29 Aligned_cols=27 Identities=11% Similarity=0.103 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhCCcEEEEe-cCCCC
Q 044690 108 ITEIKNAVKTLYDHGGRKFWIH-NTGPL 134 (207)
Q Consensus 108 v~~~~~~i~~Ly~~GAr~~vv~-~lppl 134 (207)
..++.+.++.+.+.|+++|.++ |-+|.
T Consensus 106 ~eEI~~~a~~~~~~Gv~~i~lvgGe~p~ 133 (371)
T PRK09240 106 EEEIEREMAAIKKLGFEHILLLTGEHEA 133 (371)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 4566677788889999999555 44443
No 104
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=24.83 E-value=1.8e+02 Score=20.18 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhCCCCEEEEEecchH
Q 044690 172 LLHFCQQMKSELEDATIVHVDIFSV 196 (207)
Q Consensus 172 L~~~l~~L~~~~~~~~i~~~D~y~~ 196 (207)
+...+++|.+++++.+++.+|....
T Consensus 42 l~~~l~~la~~~~~v~f~~vd~~~~ 66 (113)
T cd02957 42 LDSHLEELAAKYPETKFVKINAEKA 66 (113)
T ss_pred HHHHHHHHHHHCCCcEEEEEEchhh
Confidence 4555666777788999999999864
No 105
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=24.77 E-value=1.7e+02 Score=27.34 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=13.3
Q ss_pred CceEEEEecCCcchhhh
Q 044690 75 NALYMIDIGQNDLADSF 91 (207)
Q Consensus 75 ~sL~~i~iG~ND~~~~~ 91 (207)
+-+=+++||.||+..+.
T Consensus 444 ~~vDf~sIGtnDL~qy~ 460 (575)
T PRK11177 444 KEVDFFSIGTNDLTQYT 460 (575)
T ss_pred hhCCEEEECcHHHHHHH
Confidence 45668899999998654
No 106
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=24.66 E-value=2.2e+02 Score=21.87 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchH
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSV 196 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~ 196 (207)
.|...+.+|.+++|.++|+.+|+-..
T Consensus 100 ~m~~~l~~LA~~~~~vkF~kVd~d~~ 125 (175)
T cd02987 100 ALNSSLLCLAAEYPAVKFCKIRASAT 125 (175)
T ss_pred HHHHHHHHHHHHCCCeEEEEEeccch
Confidence 34455666777889999999999753
No 107
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=24.45 E-value=2.3e+02 Score=24.54 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhCCcEEEEec
Q 044690 108 ITEIKNAVKTLYDHGGRKFWIHN 130 (207)
Q Consensus 108 v~~~~~~i~~Ly~~GAr~~vv~~ 130 (207)
..++.+.++.+.+.|+++|.+++
T Consensus 105 ~eEI~~~a~~~~~~Gv~~i~lvg 127 (366)
T TIGR02351 105 EEEIEREIEAIKKSGFKEILLVT 127 (366)
T ss_pred HHHHHHHHHHHHhCCCCEEEEee
Confidence 46677778889999999997763
No 108
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=24.36 E-value=4.8e+02 Score=23.03 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEEEecc
Q 044690 163 AAARLFNEALLHFCQQMKSELEDATIVHVDIF 194 (207)
Q Consensus 163 ~~~~~~N~~L~~~l~~L~~~~~~~~i~~~D~y 194 (207)
+....|-..|.+++++|++++|++.|--+..-
T Consensus 205 ~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 205 EGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 44567777888999999999999988766543
No 109
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=23.64 E-value=1.2e+02 Score=25.76 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=29.6
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCCc
Q 044690 99 EVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGCL 137 (207)
Q Consensus 99 ~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~ 137 (207)
+..+++..++..+...++.|+++|++ ++.+.=|.++..
T Consensus 145 ~~~el~~~la~~~~~e~~~l~~aG~~-~iQiDEP~l~~~ 182 (332)
T cd03311 145 SREELAMDLALALREEIRDLYDAGCR-YIQIDEPALAEG 182 (332)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCC-EEEeecchhhcc
Confidence 34578889999999999999999995 666665655543
No 110
>PLN02329 3-isopropylmalate dehydrogenase
Probab=23.50 E-value=53 Score=29.19 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=27.3
Q ss_pred HHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 173 LHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 173 ~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
++.+++..++||++++-+.-+-...+.++.||.+|
T Consensus 247 ~~~~~evA~eyPdV~~~~~~VDa~a~~LV~~P~~F 281 (409)
T PLN02329 247 RKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQF 281 (409)
T ss_pred HHHHHHHHhhCCCcccchhHHHHHHHHHhcCchhC
Confidence 44555677889998777777777889999999886
No 111
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=23.37 E-value=65 Score=21.41 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.4
Q ss_pred hhhhcCceEEEEecCCcch
Q 044690 70 DEGFRNALYMIDIGQNDLA 88 (207)
Q Consensus 70 ~~~~~~sL~~i~iG~ND~~ 88 (207)
.+.+.+..+++.||+|.|-
T Consensus 31 ad~v~~~~~vFnI~GN~yR 49 (76)
T PF09907_consen 31 ADIVKNNRVVFNIGGNKYR 49 (76)
T ss_pred hhhhcCCEEEEEcCCCcEE
Confidence 3456688899999999995
No 112
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=22.97 E-value=1.8e+02 Score=20.74 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhC
Q 044690 158 ISSYNAAARLFNEALLHFCQQMKSEL 183 (207)
Q Consensus 158 ~~~~n~~~~~~N~~L~~~l~~L~~~~ 183 (207)
.+.....+..||..|...|.++.+++
T Consensus 56 ~~q~~a~t~~F~~aL~~~L~~~~~~h 81 (111)
T PF09677_consen 56 PEQVEALTQRFMQALEASLAEYQAEH 81 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35566789999999999999998875
No 113
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=22.46 E-value=1.9e+02 Score=24.35 Aligned_cols=67 Identities=13% Similarity=0.249 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 044690 106 SVITEIKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELED 185 (207)
Q Consensus 106 ~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~ 185 (207)
.=+..+.+.|+++|.-||+=.++.. |. .++ -|...-.+.+..|...|+++++++.-
T Consensus 43 ~~L~~lc~~I~~vY~PGa~v~I~SD----G~------Vf~----------DllgV~D~~v~~Y~~~Lr~l~~~~~~---- 98 (278)
T PF05141_consen 43 RRLNGLCQAIEAVYPPGAKVTIISD----GH------VFN----------DLLGVPDEEVWAYGEALRELAEEKGL---- 98 (278)
T ss_dssp HHHHHHHHHHHHHSTT-EEEEEE------HH------HHG----------GGTT--HHHHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEec----Cc------Eec----------cccCCCHHHHHHHHHHHHHHHHhcCC----
Confidence 4467888999999999998666644 21 122 26655567789999999999988752
Q ss_pred CEEEEEecchH
Q 044690 186 ATIVHVDIFSV 196 (207)
Q Consensus 186 ~~i~~~D~y~~ 196 (207)
..|-+++.-++
T Consensus 99 ~~I~f~~l~dl 109 (278)
T PF05141_consen 99 DHIKFFRLEDL 109 (278)
T ss_dssp TTEEEE-GGG-
T ss_pred CeEEEeCHHHh
Confidence 23777777666
No 114
>cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro
Probab=22.45 E-value=1.4e+02 Score=25.89 Aligned_cols=37 Identities=14% Similarity=0.132 Sum_probs=28.3
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCCC
Q 044690 99 EVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTGPLGC 136 (207)
Q Consensus 99 ~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lpplGc 136 (207)
+..+++..++..+.+.+++|+++|++-| -+.=|.+.+
T Consensus 172 ~~~el~~dla~~y~~el~~L~~aG~~~I-QiDEP~l~~ 208 (360)
T cd03312 172 DRLSLLDKLLPVYKELLKKLAAAGAEWV-QIDEPALVL 208 (360)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCEE-EeeCChhhc
Confidence 3457888999999999999999999764 444455443
No 115
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=22.20 E-value=1.1e+02 Score=21.95 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCcEEEEe
Q 044690 111 IKNAVKTLYDHGGRKFWIH 129 (207)
Q Consensus 111 ~~~~i~~Ly~~GAr~~vv~ 129 (207)
+.+.+++|.+.|+|+++|+
T Consensus 48 l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 48 IPEALKKLIGTGADKIIVV 66 (126)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 4566788889999999886
No 116
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=21.99 E-value=1.7e+02 Score=23.33 Aligned_cols=31 Identities=6% Similarity=0.069 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchHHHHHH
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSVKYDLI 201 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii 201 (207)
.|+....++.+.+|+.+++|++...+..+++
T Consensus 50 LL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~ 80 (219)
T PF00308_consen 50 LLQAIANEAQKQHPGKRVVYLSAEEFIREFA 80 (219)
T ss_dssp HHHHHHHHHHHHCTTS-EEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccceeecHHHHHHHHH
Confidence 3455555566666777777777666555443
No 117
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=21.26 E-value=1.4e+02 Score=25.59 Aligned_cols=36 Identities=8% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 171 ALLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 171 ~L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
..++..++..++|| +++-+.=+-+..+.++.+|.+|
T Consensus 176 lf~~~~~eva~~yp-v~~~~~~vDa~~~~lv~~P~~f 211 (322)
T TIGR02088 176 LFREVCREIAKRYG-VEYRDMYVDSAAMNLVKDPWRF 211 (322)
T ss_pred HHHHHHHHHHHhCC-eeeeeeeHHHHHHHHhhCCcCc
Confidence 44556667778899 8777777777889999999876
No 118
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.26 E-value=1e+02 Score=18.13 Aligned_cols=17 Identities=18% Similarity=0.044 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhC
Q 044690 167 LFNEALLHFCQQMKSEL 183 (207)
Q Consensus 167 ~~N~~L~~~l~~L~~~~ 183 (207)
.=|.+|+..|++||+.-
T Consensus 19 eeNrRL~ke~~eLralk 35 (44)
T smart00340 19 EENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 56999999999998743
No 119
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=21.22 E-value=1.3e+02 Score=29.01 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=13.8
Q ss_pred cCceEEEEecCCcchhhhh
Q 044690 74 RNALYMIDIGQNDLADSFS 92 (207)
Q Consensus 74 ~~sL~~i~iG~ND~~~~~~ 92 (207)
.+-+=+++||+||+..+.+
T Consensus 609 a~~~DF~SIGtNDL~Qy~l 627 (748)
T PRK11061 609 ASRVDFISVGTNDLTQYLL 627 (748)
T ss_pred HHhCCEEEECccHHHHHHH
Confidence 3445688999999986543
No 120
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=21.10 E-value=1.7e+02 Score=24.75 Aligned_cols=33 Identities=15% Similarity=0.352 Sum_probs=26.3
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 044690 99 EVIKRIPSVITEIKNAVKTLYDHGGRKFWIHNTG 132 (207)
Q Consensus 99 ~~~~~~~~~v~~~~~~i~~Ly~~GAr~~vv~~lp 132 (207)
+..+++..++..+...++.|++.|+| +|-++=|
T Consensus 144 ~~~~~~~dla~a~~~ei~~l~~~G~~-~iQiDeP 176 (324)
T PF01717_consen 144 DREELLEDLAEAYREEIRALYDAGCR-YIQIDEP 176 (324)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTT-S-EEEEEET
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCC-EEEecch
Confidence 45678889999999999999999996 5666666
No 121
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=20.80 E-value=5.2e+02 Score=22.48 Aligned_cols=76 Identities=16% Similarity=0.158 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCCCCchhhhhhhhccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE
Q 044690 111 IKNAVKTLYDHGGRKFWIHNTGPLGCLPQKLSLIQLLQKKDLDTYGCISSYNAAARLFNEALLHFCQQMKSELEDATIVH 190 (207)
Q Consensus 111 ~~~~i~~Ly~~GAr~~vv~~lpplGc~P~~~~~~~~~~~~~~d~~~c~~~~n~~~~~~N~~L~~~l~~L~~~~~~~~i~~ 190 (207)
+.+.++.|.+.+..-+.++++--+.|.|..+....-. .|+.+.+ +..+. .+....+++.-.+...+++.
T Consensus 90 lr~~~~~l~~~~l~~~~iPgVi~LptVP~~RK~N~ID-------mGTaDKv---a~a~l-ai~~~~~~~gi~y~~~nfIl 158 (343)
T PF07318_consen 90 LRKLVRELAESNLPAYFIPGVIHLPTVPAWRKINRID-------MGTADKV---ASAAL-AIYDQAEREGIEYREVNFIL 158 (343)
T ss_pred HHHHHHHHHhCCCCEEEeCceeccCCCchHhhhcccc-------cCcHhHH---HHHHH-HHHhhHHhhCCCcccceEEE
Confidence 6677778888888999999999999999887653221 2444433 32322 22233334444566779999
Q ss_pred EecchHH
Q 044690 191 VDIFSVK 197 (207)
Q Consensus 191 ~D~y~~~ 197 (207)
+|+-.-+
T Consensus 159 vEiG~~y 165 (343)
T PF07318_consen 159 VEIGSGY 165 (343)
T ss_pred EEccCCc
Confidence 8875543
No 122
>PRK09222 isocitrate dehydrogenase; Validated
Probab=20.71 E-value=1.4e+02 Score=27.16 Aligned_cols=36 Identities=14% Similarity=0.136 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhCCCCEEEEEecchHHHHHHHccccC
Q 044690 172 LLHFCQQMKSELEDATIVHVDIFSVKYDLIANSTKY 207 (207)
Q Consensus 172 L~~~l~~L~~~~~~~~i~~~D~y~~~~~ii~nP~~y 207 (207)
.++..++..++||++++-..=+-...+.++.+|.+|
T Consensus 186 f~~v~~eva~eyPdI~~~~~~VDa~a~~Lv~~P~~F 221 (482)
T PRK09222 186 FHKVFDEIAKEYPDIEAEHYIVDIGAARLATNPENF 221 (482)
T ss_pred HHHHHHHHHhhCCCceEeeeeHHHHHHHHhcCcccc
Confidence 345556667789998877777777889999999876
No 123
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=20.66 E-value=1.5e+02 Score=22.30 Aligned_cols=30 Identities=10% Similarity=0.046 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHH-hCCcEEEEecCCCCCC
Q 044690 107 VITEIKNAVKTLYD-HGGRKFWIHNTGPLGC 136 (207)
Q Consensus 107 ~v~~~~~~i~~Ly~-~GAr~~vv~~lpplGc 136 (207)
.+.++.+.++++.+ .+++++++++++--..
T Consensus 3 ~~~~i~~~~~~i~~~~~~~~iv~~GiGGS~l 33 (158)
T cd05015 3 ELERIKEFAEKVRSGKKITDVVVIGIGGSDL 33 (158)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEecCccHH
Confidence 45566777777776 5899999999876433
No 124
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=20.47 E-value=94 Score=25.18 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 044690 108 ITEIKNAVKTLYDHGGRKFWIHNTGP 133 (207)
Q Consensus 108 v~~~~~~i~~Ly~~GAr~~vv~~lpp 133 (207)
.+++.+..++|+++|+++++|.+.+-
T Consensus 141 ~~~~~~~~~~l~~~G~~~VvItg~~~ 166 (246)
T PF08543_consen 141 EEDIEEAAKALLALGPKNVVITGGHL 166 (246)
T ss_dssp HHHHHHHHHHHHHTS-SEEEEEEEEG
T ss_pred hHhHHHHHHHHHHhCCceEEEeeecc
Confidence 34677889999999999999999863
No 125
>PRK07360 FO synthase subunit 2; Reviewed
Probab=20.34 E-value=3.5e+02 Score=23.51 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEec
Q 044690 107 VITEIKNAVKTLYDHGGRKFWIHN 130 (207)
Q Consensus 107 ~v~~~~~~i~~Ly~~GAr~~vv~~ 130 (207)
-.+++.+.++++++.|++.|.+.+
T Consensus 92 s~eeI~~~a~~a~~~G~~~i~l~~ 115 (371)
T PRK07360 92 TIAEILEKAAEAVKRGATEVCIQG 115 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEcc
Confidence 456777888999999999997775
No 126
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=20.09 E-value=91 Score=23.69 Aligned_cols=17 Identities=12% Similarity=-0.009 Sum_probs=14.6
Q ss_pred HHHHHHhCCcEEEEecC
Q 044690 115 VKTLYDHGGRKFWIHNT 131 (207)
Q Consensus 115 i~~Ly~~GAr~~vv~~l 131 (207)
++.+++.|++++++.|+
T Consensus 159 ~~~a~~~g~~~iv~v~~ 175 (175)
T cd07228 159 VSVARALGADIVIAVDL 175 (175)
T ss_pred HHHHHHCCCCEEEEEeC
Confidence 56788999999999875
Done!