BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044691
         (172 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
          Length = 660

 Score = 32.3 bits (72), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 31  DQRKRKRMISNRE--SARRSRMRKQKHLDDLMA 61
           ++R RKR +  +E  SA+RSR+ +++ LDD++A
Sbjct: 626 EERSRKRKLDEKENLSAKRSRIEQKEELDDVIA 658


>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
 pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
          Length = 640

 Score = 32.0 bits (71), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 31  DQRKRKRMISNRE--SARRSRMRKQKHLDDLMA 61
           ++R RKR +  +E  SA+RSR+ +++ LDD++A
Sbjct: 606 EERSRKRKLDEKENLSAKRSRIEQKEELDDVIA 638


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.129    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,909,399
Number of Sequences: 62578
Number of extensions: 73113
Number of successful extensions: 288
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 8
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)