Query 044691
Match_columns 172
No_of_seqs 194 out of 741
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.5 7.3E-13 1.6E-17 91.2 9.3 62 30-91 2-63 (65)
2 KOG4005 Transcription factor X 99.4 2.4E-12 5.2E-17 110.2 13.1 83 30-112 66-148 (292)
3 PF00170 bZIP_1: bZIP transcri 99.4 2.9E-12 6.3E-17 88.0 9.2 62 31-92 3-64 (64)
4 KOG4343 bZIP transcription fac 99.2 1.2E-11 2.5E-16 115.2 7.2 65 32-96 280-344 (655)
5 PF07716 bZIP_2: Basic region 99.2 2.1E-10 4.5E-15 76.7 8.6 51 31-82 3-53 (54)
6 KOG3584 cAMP response element 99.1 1.9E-10 4.1E-15 100.8 8.1 55 32-86 290-344 (348)
7 KOG0709 CREB/ATF family transc 98.8 1.3E-08 2.7E-13 93.7 7.2 68 32-106 250-317 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.0 9.8E-08 2.1E-12 70.1 -5.9 52 30-81 27-78 (92)
9 KOG0837 Transcriptional activa 98.0 4.5E-05 9.8E-10 66.3 8.7 42 37-78 210-251 (279)
10 KOG4571 Activating transcripti 97.4 0.0014 3.1E-08 57.8 10.5 50 30-79 223-273 (294)
11 KOG3119 Basic region leucine z 97.4 0.0008 1.7E-08 58.3 8.5 66 30-116 191-256 (269)
12 KOG4196 bZIP transcription fac 97.0 0.011 2.4E-07 46.9 10.4 67 32-112 52-118 (135)
13 COG3074 Uncharacterized protei 96.8 0.01 2.2E-07 42.7 7.7 56 56-111 20-75 (79)
14 PF06005 DUF904: Protein of un 96.7 0.043 9.4E-07 39.1 10.2 57 55-111 5-68 (72)
15 PF06005 DUF904: Protein of un 96.6 0.064 1.4E-06 38.2 10.6 27 64-90 7-33 (72)
16 TIGR02449 conserved hypothetic 96.5 0.054 1.2E-06 38.1 9.7 60 56-115 2-61 (65)
17 TIGR02449 conserved hypothetic 96.5 0.034 7.3E-07 39.2 8.6 56 54-109 7-62 (65)
18 PF07989 Microtub_assoc: Micro 96.5 0.049 1.1E-06 39.0 9.5 62 56-117 2-71 (75)
19 PF02183 HALZ: Homeobox associ 96.4 0.014 3E-07 38.1 5.9 42 65-106 2-43 (45)
20 TIGR02894 DNA_bind_RsfA transc 96.4 0.05 1.1E-06 44.5 10.4 56 62-117 98-153 (161)
21 PRK15422 septal ring assembly 96.3 0.035 7.5E-07 40.5 8.2 56 57-112 21-76 (79)
22 PF06156 DUF972: Protein of un 96.3 0.033 7.2E-07 42.4 8.4 53 58-110 5-57 (107)
23 KOG3863 bZIP transcription fac 96.2 0.013 2.9E-07 56.1 6.7 72 36-120 493-564 (604)
24 PRK10884 SH3 domain-containing 95.9 0.16 3.5E-06 42.7 11.3 63 54-116 100-166 (206)
25 PRK13169 DNA replication intia 95.9 0.072 1.6E-06 40.9 8.3 51 58-108 5-55 (110)
26 PF06156 DUF972: Protein of un 95.7 0.077 1.7E-06 40.4 7.8 50 54-103 8-57 (107)
27 PRK13169 DNA replication intia 95.6 0.085 1.8E-06 40.5 7.8 49 54-102 8-56 (110)
28 KOG4005 Transcription factor X 95.4 1.3 2.7E-05 38.9 15.0 91 28-120 68-163 (292)
29 PF07888 CALCOCO1: Calcium bin 95.4 0.53 1.1E-05 45.1 13.8 84 33-116 150-233 (546)
30 PF04899 MbeD_MobD: MbeD/MobD 95.2 0.51 1.1E-05 33.6 10.0 59 58-116 11-69 (70)
31 PF09738 DUF2051: Double stran 95.1 1.3 2.8E-05 39.4 14.7 86 28-116 87-174 (302)
32 COG4467 Regulator of replicati 95.0 0.15 3.3E-06 39.4 7.5 49 59-107 6-54 (114)
33 PF14197 Cep57_CLD_2: Centroso 94.9 0.44 9.5E-06 33.6 9.0 56 53-108 11-66 (69)
34 PF11559 ADIP: Afadin- and alp 94.8 0.78 1.7E-05 35.8 11.3 82 34-115 46-127 (151)
35 PRK13729 conjugal transfer pil 94.7 0.12 2.5E-06 48.6 7.4 51 52-102 74-124 (475)
36 PRK11637 AmiB activator; Provi 94.5 1.4 2.9E-05 40.1 13.8 64 50-113 64-127 (428)
37 PF08614 ATG16: Autophagy prot 94.5 1.3 2.8E-05 36.2 12.4 33 63-95 146-178 (194)
38 PF14662 CCDC155: Coiled-coil 94.4 0.35 7.6E-06 40.6 9.0 62 56-117 3-64 (193)
39 PF11559 ADIP: Afadin- and alp 94.1 2.2 4.8E-05 33.2 13.5 66 48-113 46-111 (151)
40 PF10805 DUF2730: Protein of u 94.0 0.86 1.9E-05 34.3 9.6 64 52-115 33-98 (106)
41 PF06785 UPF0242: Uncharacteri 93.9 0.4 8.7E-06 43.7 8.8 63 48-110 121-183 (401)
42 PF02183 HALZ: Homeobox associ 93.9 0.33 7.2E-06 31.6 6.2 41 72-112 2-42 (45)
43 COG4026 Uncharacterized protei 93.9 0.92 2E-05 39.5 10.6 62 52-113 140-201 (290)
44 KOG3119 Basic region leucine z 93.9 0.6 1.3E-05 40.5 9.7 33 50-82 218-250 (269)
45 PF12329 TMF_DNA_bd: TATA elem 93.7 1.2 2.6E-05 31.6 9.4 62 52-113 10-71 (74)
46 PF10224 DUF2205: Predicted co 93.7 0.63 1.4E-05 33.9 8.0 45 57-101 19-63 (80)
47 PRK10884 SH3 domain-containing 93.3 2.5 5.5E-05 35.5 12.2 52 54-105 118-169 (206)
48 PRK15422 septal ring assembly 92.9 2 4.3E-05 31.4 9.5 61 55-115 5-65 (79)
49 PF12325 TMF_TATA_bd: TATA ele 92.9 2.1 4.5E-05 33.3 10.2 19 91-109 70-88 (120)
50 COG1579 Zn-ribbon protein, pos 92.6 5.7 0.00012 34.4 13.6 47 35-81 33-79 (239)
51 PRK11637 AmiB activator; Provi 92.6 3.3 7.1E-05 37.6 12.8 75 38-112 59-133 (428)
52 PF12808 Mto2_bdg: Micro-tubul 92.5 0.39 8.4E-06 32.5 5.1 50 51-103 1-50 (52)
53 PF07106 TBPIP: Tat binding pr 92.5 0.87 1.9E-05 36.2 7.9 27 91-117 111-137 (169)
54 PF07106 TBPIP: Tat binding pr 92.4 1.9 4.1E-05 34.3 9.8 55 56-110 81-137 (169)
55 PF09726 Macoilin: Transmembra 92.4 3.2 6.9E-05 40.8 13.1 43 54-96 538-580 (697)
56 PRK04406 hypothetical protein; 92.4 1.9 4E-05 30.9 8.8 51 58-108 8-58 (75)
57 PRK09039 hypothetical protein; 92.2 3.2 6.9E-05 37.2 12.0 46 63-108 139-184 (343)
58 PF09755 DUF2046: Uncharacteri 92.2 2.1 4.5E-05 38.4 10.7 50 57-106 23-72 (310)
59 smart00338 BRLZ basic region l 92.1 0.83 1.8E-05 31.0 6.4 38 75-112 26-63 (65)
60 PF10473 CENP-F_leu_zip: Leuci 91.7 5.7 0.00012 31.7 13.4 85 32-116 30-114 (140)
61 PRK02119 hypothetical protein; 91.6 2.4 5.2E-05 30.1 8.6 50 58-107 6-55 (73)
62 PRK04325 hypothetical protein; 91.5 2 4.3E-05 30.6 8.0 45 56-107 11-55 (74)
63 COG4467 Regulator of replicati 91.4 0.75 1.6E-05 35.6 6.1 47 54-100 8-54 (114)
64 TIGR00219 mreC rod shape-deter 91.4 0.58 1.3E-05 40.8 6.2 35 62-96 67-105 (283)
65 TIGR03752 conj_TIGR03752 integ 91.4 1.8 3.9E-05 40.8 9.8 61 55-115 74-135 (472)
66 PF11932 DUF3450: Protein of u 91.4 5.7 0.00012 33.6 12.1 23 56-78 44-66 (251)
67 PF08614 ATG16: Autophagy prot 91.2 2.8 6.1E-05 34.2 9.8 41 62-102 117-157 (194)
68 PF10224 DUF2205: Predicted co 91.2 3.4 7.4E-05 30.1 9.1 64 53-116 7-71 (80)
69 PF00170 bZIP_1: bZIP transcri 91.2 1.5 3.2E-05 29.7 6.9 39 74-112 25-63 (64)
70 PRK00888 ftsB cell division pr 90.9 1.2 2.5E-05 33.6 6.7 43 71-113 30-72 (105)
71 PRK02793 phi X174 lysis protei 90.9 2.4 5.3E-05 29.9 8.0 47 54-107 8-54 (72)
72 PF12718 Tropomyosin_1: Tropom 90.7 4.2 9E-05 32.2 10.0 20 59-78 19-38 (143)
73 PF08317 Spc7: Spc7 kinetochor 90.7 3.4 7.4E-05 36.4 10.5 59 54-112 209-267 (325)
74 PRK00846 hypothetical protein; 90.6 2.9 6.2E-05 30.3 8.2 52 58-109 10-61 (77)
75 COG4942 Membrane-bound metallo 90.6 9.6 0.00021 35.6 13.6 84 33-116 38-125 (420)
76 PF04102 SlyX: SlyX; InterPro 90.6 1.9 4.2E-05 30.0 7.1 49 54-109 4-52 (69)
77 PF09728 Taxilin: Myosin-like 90.5 3.4 7.5E-05 36.6 10.3 63 54-116 244-306 (309)
78 PF12325 TMF_TATA_bd: TATA ele 90.5 3.9 8.6E-05 31.7 9.5 19 88-106 95-113 (120)
79 PRK00295 hypothetical protein; 90.4 3.5 7.5E-05 28.8 8.3 47 55-108 6-52 (68)
80 PF05266 DUF724: Protein of un 90.3 9.5 0.00021 31.7 12.6 79 31-109 87-165 (190)
81 PF15294 Leu_zip: Leucine zipp 90.3 1.3 2.8E-05 39.2 7.4 45 59-103 130-174 (278)
82 PF04102 SlyX: SlyX; InterPro 90.2 2.6 5.7E-05 29.3 7.5 51 59-116 2-52 (69)
83 PF14197 Cep57_CLD_2: Centroso 90.2 5 0.00011 28.3 9.3 51 59-109 3-53 (69)
84 PF14662 CCDC155: Coiled-coil 89.9 4 8.6E-05 34.4 9.6 47 74-120 66-112 (193)
85 KOG4571 Activating transcripti 89.7 3.8 8.2E-05 36.5 9.8 43 73-115 246-288 (294)
86 PF04156 IncA: IncA protein; 89.6 9.2 0.0002 30.5 13.0 62 51-112 127-188 (191)
87 COG3883 Uncharacterized protei 89.4 4.9 0.00011 35.3 10.2 61 52-112 36-103 (265)
88 PF04880 NUDE_C: NUDE protein, 89.1 0.75 1.6E-05 37.7 4.7 52 56-112 2-53 (166)
89 KOG1853 LIS1-interacting prote 89.1 16 0.00035 32.5 13.5 75 35-109 26-118 (333)
90 PF13747 DUF4164: Domain of un 88.8 7.6 0.00016 28.5 11.6 69 33-101 11-79 (89)
91 COG3883 Uncharacterized protei 88.7 5.2 0.00011 35.1 9.9 50 53-102 51-100 (265)
92 PF11180 DUF2968: Protein of u 88.5 14 0.0003 31.1 13.2 81 32-112 104-184 (192)
93 KOG0977 Nuclear envelope prote 87.9 6.6 0.00014 37.8 10.8 60 45-104 132-191 (546)
94 PF01166 TSC22: TSC-22/dip/bun 87.6 1.1 2.3E-05 31.1 4.0 30 68-97 14-43 (59)
95 PRK00736 hypothetical protein; 87.5 5.3 0.00011 27.9 7.6 47 54-107 5-51 (68)
96 TIGR02169 SMC_prok_A chromosom 87.3 18 0.00039 35.8 13.8 51 63-113 436-486 (1164)
97 PRK13922 rod shape-determining 87.2 3.5 7.6E-05 35.1 7.9 9 88-96 99-107 (276)
98 PF08826 DMPK_coil: DMPK coile 87.2 6.9 0.00015 27.1 7.9 45 59-103 16-60 (61)
99 PRK02119 hypothetical protein; 87.1 5.4 0.00012 28.3 7.6 21 95-115 36-56 (73)
100 KOG0977 Nuclear envelope prote 87.1 8.1 0.00018 37.2 10.9 65 47-111 35-135 (546)
101 COG4026 Uncharacterized protei 86.9 7.6 0.00017 34.0 9.7 46 56-101 137-182 (290)
102 PF08317 Spc7: Spc7 kinetochor 86.8 22 0.00047 31.4 13.1 27 86-112 234-260 (325)
103 COG4942 Membrane-bound metallo 86.6 11 0.00023 35.2 11.1 73 40-112 38-110 (420)
104 PRK09039 hypothetical protein; 86.6 16 0.00034 32.8 11.9 40 73-112 142-181 (343)
105 PF09304 Cortex-I_coil: Cortex 86.5 13 0.00028 28.6 9.8 43 38-80 21-63 (107)
106 PF12718 Tropomyosin_1: Tropom 86.2 12 0.00025 29.7 9.8 30 52-81 33-62 (143)
107 PRK10803 tol-pal system protei 86.2 4.4 9.6E-05 34.9 8.0 48 54-101 54-101 (263)
108 KOG1414 Transcriptional activa 86.2 0.034 7.4E-07 50.5 -5.3 71 28-119 149-223 (395)
109 PF04111 APG6: Autophagy prote 86.1 22 0.00048 31.5 12.5 67 52-118 62-135 (314)
110 PF10481 CENP-F_N: Cenp-F N-te 86.1 16 0.00034 32.7 11.4 71 50-120 49-133 (307)
111 smart00787 Spc7 Spc7 kinetocho 86.0 9.7 0.00021 33.9 10.2 25 62-86 212-236 (312)
112 PF05278 PEARLI-4: Arabidopsis 85.7 25 0.00053 31.1 12.9 52 53-104 206-257 (269)
113 PRK00295 hypothetical protein; 85.5 9.8 0.00021 26.5 8.1 51 59-116 3-53 (68)
114 PHA02562 46 endonuclease subun 85.4 25 0.00054 32.4 13.0 39 56-94 360-398 (562)
115 PF10211 Ax_dynein_light: Axon 85.2 20 0.00043 29.5 12.2 56 56-111 122-178 (189)
116 PF04849 HAP1_N: HAP1 N-termin 85.1 13 0.00029 33.3 10.6 31 69-99 235-265 (306)
117 PF03962 Mnd1: Mnd1 family; I 85.1 8.9 0.00019 31.6 8.9 16 84-99 112-127 (188)
118 PF13805 Pil1: Eisosome compon 85.0 8.8 0.00019 33.9 9.3 68 32-104 126-194 (271)
119 smart00340 HALZ homeobox assoc 84.9 2.7 5.9E-05 27.5 4.6 27 77-103 7-33 (44)
120 PRK00888 ftsB cell division pr 84.9 3.8 8.2E-05 30.9 6.1 34 77-110 29-62 (105)
121 PRK02793 phi X174 lysis protei 84.7 8.6 0.00019 27.1 7.6 52 59-117 6-57 (72)
122 PF06632 XRCC4: DNA double-str 84.7 14 0.00029 33.5 10.7 39 56-94 139-177 (342)
123 PF04977 DivIC: Septum formati 84.7 4.5 9.8E-05 27.5 6.1 41 72-112 21-61 (80)
124 PF08172 CASP_C: CASP C termin 84.6 6.6 0.00014 33.9 8.3 22 54-75 93-114 (248)
125 TIGR02209 ftsL_broad cell divi 84.6 6.5 0.00014 27.4 7.0 35 69-103 25-59 (85)
126 COG2900 SlyX Uncharacterized p 84.5 11 0.00023 27.2 7.9 51 59-109 6-56 (72)
127 KOG1962 B-cell receptor-associ 84.5 21 0.00045 30.6 11.1 52 59-110 149-200 (216)
128 PF05667 DUF812: Protein of un 84.1 13 0.00028 36.1 10.8 67 50-116 324-390 (594)
129 KOG1962 B-cell receptor-associ 84.0 4.8 0.0001 34.4 7.0 33 66-98 177-209 (216)
130 KOG0946 ER-Golgi vesicle-tethe 83.8 17 0.00038 36.8 11.7 62 38-99 655-716 (970)
131 KOG3650 Predicted coiled-coil 83.8 8.8 0.00019 29.6 7.7 37 61-97 63-99 (120)
132 PF02403 Seryl_tRNA_N: Seryl-t 83.7 15 0.00032 26.9 10.4 60 56-115 31-93 (108)
133 KOG4797 Transcriptional regula 83.6 3 6.6E-05 32.5 5.2 32 67-98 66-97 (123)
134 PF15070 GOLGA2L5: Putative go 83.5 32 0.0007 33.5 13.3 44 51-94 119-186 (617)
135 PRK04406 hypothetical protein; 83.2 12 0.00025 26.8 7.8 51 66-116 9-59 (75)
136 PRK04325 hypothetical protein; 83.1 13 0.00028 26.3 8.0 55 56-117 4-58 (74)
137 PF07558 Shugoshin_N: Shugoshi 82.7 1.6 3.5E-05 28.4 2.9 37 62-98 8-44 (46)
138 PF08647 BRE1: BRE1 E3 ubiquit 82.6 17 0.00036 26.7 11.8 74 36-109 6-79 (96)
139 PF10186 Atg14: UV radiation r 82.6 27 0.00059 29.1 14.2 16 95-110 125-140 (302)
140 PF12777 MT: Microtubule-bindi 82.6 11 0.00023 33.5 9.1 61 55-115 229-289 (344)
141 PRK00736 hypothetical protein; 82.5 14 0.0003 25.8 7.8 52 59-117 3-54 (68)
142 PF04111 APG6: Autophagy prote 82.4 33 0.00072 30.4 12.0 68 43-110 67-134 (314)
143 PF07888 CALCOCO1: Calcium bin 82.4 49 0.0011 32.0 13.8 32 65-96 203-234 (546)
144 KOG1414 Transcriptional activa 82.2 0.22 4.8E-06 45.3 -1.8 44 31-74 283-326 (395)
145 PF04849 HAP1_N: HAP1 N-termin 82.2 18 0.0004 32.4 10.3 63 51-113 231-293 (306)
146 PF10506 MCC-bdg_PDZ: PDZ doma 82.1 15 0.00033 25.9 8.4 59 58-116 2-60 (67)
147 PF05812 Herpes_BLRF2: Herpesv 81.9 2.7 5.8E-05 32.9 4.4 30 52-81 1-30 (118)
148 KOG3433 Protein involved in me 81.9 19 0.00041 30.5 9.6 39 42-80 104-142 (203)
149 KOG1319 bHLHZip transcription 81.8 32 0.00069 29.4 11.7 86 34-119 59-156 (229)
150 KOG0288 WD40 repeat protein Ti 81.8 33 0.00071 32.3 12.0 27 52-78 46-72 (459)
151 PF12329 TMF_DNA_bd: TATA elem 81.8 16 0.00034 25.9 9.9 62 56-117 7-68 (74)
152 KOG4196 bZIP transcription fac 81.7 25 0.00054 28.1 9.8 61 55-116 48-108 (135)
153 PF07407 Seadorna_VP6: Seadorn 81.7 7.7 0.00017 35.6 7.8 33 61-95 32-64 (420)
154 KOG0982 Centrosomal protein Nu 81.7 49 0.0011 31.5 13.1 53 54-106 297-349 (502)
155 PHA03162 hypothetical protein; 81.7 1.3 2.8E-05 35.4 2.5 29 50-78 9-37 (135)
156 PF10174 Cast: RIM-binding pro 81.6 13 0.00028 37.2 10.0 66 50-115 297-362 (775)
157 PF10482 CtIP_N: Tumour-suppre 81.5 14 0.00031 28.9 8.2 58 49-106 9-66 (120)
158 PF14915 CCDC144C: CCDC144C pr 81.4 33 0.00072 30.9 11.5 71 42-112 181-251 (305)
159 PF07412 Geminin: Geminin; In 81.3 10 0.00022 32.1 8.0 45 68-116 125-169 (200)
160 KOG4643 Uncharacterized coiled 81.1 11 0.00023 39.0 9.3 59 51-109 527-588 (1195)
161 PRK10636 putative ABC transpor 80.9 20 0.00043 34.4 10.7 64 53-116 562-632 (638)
162 PF07716 bZIP_2: Basic region 80.5 6.6 0.00014 25.8 5.3 30 74-103 24-53 (54)
163 PF13851 GAS: Growth-arrest sp 80.3 33 0.00071 28.5 14.5 57 31-87 70-126 (201)
164 PF15035 Rootletin: Ciliary ro 80.1 23 0.00051 29.2 9.6 43 70-112 76-118 (182)
165 PF05377 FlaC_arch: Flagella a 80.1 16 0.00035 24.9 8.1 33 84-116 16-48 (55)
166 KOG0250 DNA repair protein RAD 80.0 44 0.00096 34.7 13.2 58 44-101 369-427 (1074)
167 PF08172 CASP_C: CASP C termin 79.8 28 0.00061 30.0 10.4 46 65-110 90-135 (248)
168 KOG1103 Predicted coiled-coil 79.8 12 0.00027 34.8 8.5 70 41-110 225-294 (561)
169 PF04977 DivIC: Septum formati 79.8 13 0.00027 25.3 6.8 28 53-80 23-50 (80)
170 COG2433 Uncharacterized conser 79.6 21 0.00045 35.1 10.3 62 54-115 436-507 (652)
171 PRK04863 mukB cell division pr 79.4 50 0.0011 35.5 13.8 20 33-52 321-340 (1486)
172 PF13851 GAS: Growth-arrest sp 79.3 17 0.00037 30.2 8.6 58 55-112 49-109 (201)
173 PF09738 DUF2051: Double stran 79.3 16 0.00035 32.5 8.9 63 61-123 112-177 (302)
174 KOG3650 Predicted coiled-coil 79.3 12 0.00026 28.8 7.0 57 60-116 55-111 (120)
175 PF09744 Jnk-SapK_ap_N: JNK_SA 79.1 32 0.0007 27.8 11.0 50 57-106 92-141 (158)
176 PF11365 DUF3166: Protein of u 79.1 11 0.00023 28.5 6.6 41 64-104 4-44 (96)
177 KOG0250 DNA repair protein RAD 79.0 27 0.00058 36.3 11.3 58 52-109 370-428 (1074)
178 KOG1318 Helix loop helix trans 78.6 29 0.00062 32.4 10.6 81 28-108 224-323 (411)
179 PF14988 DUF4515: Domain of un 78.5 36 0.00078 28.5 10.4 41 64-104 159-199 (206)
180 smart00787 Spc7 Spc7 kinetocho 78.4 29 0.00063 30.9 10.3 37 76-112 205-241 (312)
181 KOG1103 Predicted coiled-coil 78.3 31 0.00068 32.2 10.6 61 51-111 129-189 (561)
182 PF05103 DivIVA: DivIVA protei 78.1 1.3 2.8E-05 33.2 1.5 45 54-98 25-69 (131)
183 PHA03155 hypothetical protein; 78.1 20 0.00044 27.9 8.0 26 54-79 8-33 (115)
184 PF10146 zf-C4H2: Zinc finger- 77.9 40 0.00086 28.9 10.6 72 50-121 28-107 (230)
185 PF05700 BCAS2: Breast carcino 77.9 14 0.00031 30.8 7.9 38 76-113 176-213 (221)
186 PF02403 Seryl_tRNA_N: Seryl-t 77.9 24 0.00053 25.7 8.8 58 58-115 40-100 (108)
187 TIGR03752 conj_TIGR03752 integ 77.8 21 0.00046 33.8 9.6 59 57-115 83-142 (472)
188 PRK13922 rod shape-determining 77.4 39 0.00084 28.7 10.5 20 86-105 73-92 (276)
189 PF15058 Speriolin_N: Sperioli 77.2 7 0.00015 33.1 5.7 34 56-97 7-40 (200)
190 PF07058 Myosin_HC-like: Myosi 77.1 11 0.00023 34.3 7.1 46 65-110 4-49 (351)
191 PF10805 DUF2730: Protein of u 76.9 29 0.00062 26.0 9.6 51 54-109 49-99 (106)
192 KOG4343 bZIP transcription fac 76.9 14 0.00029 36.0 8.1 30 80-109 307-336 (655)
193 PRK10929 putative mechanosensi 76.8 44 0.00095 34.9 12.3 59 63-121 260-318 (1109)
194 COG3074 Uncharacterized protei 76.7 26 0.00056 25.4 9.5 50 55-104 5-54 (79)
195 COG1579 Zn-ribbon protein, pos 76.5 49 0.0011 28.7 10.9 34 55-88 90-123 (239)
196 PF14257 DUF4349: Domain of un 76.5 22 0.00048 30.0 8.7 63 54-116 132-196 (262)
197 KOG0161 Myosin class II heavy 76.4 84 0.0018 34.8 14.6 36 59-94 948-983 (1930)
198 PF01486 K-box: K-box region; 76.4 12 0.00026 27.4 6.2 31 69-99 69-99 (100)
199 PF05384 DegS: Sensor protein 76.3 40 0.00087 27.4 12.3 82 37-118 17-127 (159)
200 PF00038 Filament: Intermediat 76.3 48 0.001 28.3 13.5 43 63-105 211-253 (312)
201 PRK10803 tol-pal system protei 76.3 15 0.00032 31.7 7.7 38 53-90 60-97 (263)
202 PF03961 DUF342: Protein of un 76.1 29 0.00064 31.8 10.0 33 83-115 376-408 (451)
203 PF05837 CENP-H: Centromere pr 75.9 31 0.00066 25.8 8.7 60 55-115 18-77 (106)
204 PF05335 DUF745: Protein of un 75.9 45 0.00098 27.8 10.5 67 50-116 63-129 (188)
205 PF00038 Filament: Intermediat 75.9 45 0.00098 28.5 10.6 28 54-81 223-250 (312)
206 PF09789 DUF2353: Uncharacteri 75.9 9.2 0.0002 34.5 6.4 7 70-76 81-87 (319)
207 KOG2077 JNK/SAPK-associated pr 75.7 9.9 0.00021 37.3 6.9 46 57-102 325-370 (832)
208 PF10186 Atg14: UV radiation r 75.6 46 0.001 27.7 13.5 6 61-66 91-96 (302)
209 PRK00846 hypothetical protein; 75.4 28 0.00061 25.2 7.7 54 64-117 9-62 (77)
210 TIGR01843 type_I_hlyD type I s 75.2 56 0.0012 28.5 11.6 23 93-115 250-272 (423)
211 PF06428 Sec2p: GDP/GTP exchan 75.1 3.6 7.7E-05 31.1 3.1 62 56-117 17-79 (100)
212 KOG2391 Vacuolar sorting prote 75.0 42 0.0009 30.9 10.4 23 52-74 223-245 (365)
213 PF06785 UPF0242: Uncharacteri 74.8 71 0.0015 29.5 12.1 70 33-106 75-158 (401)
214 PF07334 IFP_35_N: Interferon- 74.5 9.3 0.0002 27.7 5.0 33 85-117 3-35 (76)
215 PF10146 zf-C4H2: Zinc finger- 74.4 55 0.0012 28.0 11.0 52 53-104 49-103 (230)
216 PF12709 Kinetocho_Slk19: Cent 74.0 21 0.00045 26.5 6.9 31 74-104 48-78 (87)
217 PRK10722 hypothetical protein; 74.0 25 0.00054 30.7 8.4 51 65-115 148-202 (247)
218 PF04642 DUF601: Protein of un 73.8 5.4 0.00012 35.3 4.3 58 55-112 218-275 (311)
219 PF03980 Nnf1: Nnf1 ; InterPr 73.8 7.3 0.00016 28.8 4.6 28 52-79 78-105 (109)
220 PF07798 DUF1640: Protein of u 73.8 29 0.00063 28.0 8.4 23 84-106 75-97 (177)
221 KOG4360 Uncharacterized coiled 73.8 33 0.00072 33.2 9.8 43 54-96 219-261 (596)
222 PF04999 FtsL: Cell division p 73.6 14 0.0003 26.6 5.9 37 67-103 34-70 (97)
223 PF10481 CENP-F_N: Cenp-F N-te 73.0 30 0.00066 30.9 8.8 84 33-116 18-115 (307)
224 PF02388 FemAB: FemAB family; 73.0 32 0.0007 31.2 9.3 60 54-117 242-301 (406)
225 PRK13729 conjugal transfer pil 72.9 23 0.0005 33.6 8.5 55 52-113 67-121 (475)
226 PRK14127 cell division protein 72.9 12 0.00027 28.6 5.7 34 80-113 35-68 (109)
227 PF04340 DUF484: Protein of un 72.6 19 0.00042 29.7 7.3 48 56-107 42-89 (225)
228 TIGR01000 bacteriocin_acc bact 72.4 75 0.0016 29.1 11.7 35 86-120 288-322 (457)
229 KOG4643 Uncharacterized coiled 72.3 74 0.0016 33.3 12.3 87 30-116 370-456 (1195)
230 KOG0946 ER-Golgi vesicle-tethe 71.9 39 0.00085 34.4 10.2 64 54-117 650-713 (970)
231 PF04136 Sec34: Sec34-like fam 71.9 49 0.0011 26.4 9.2 63 55-117 22-87 (157)
232 PF10212 TTKRSYEDQ: Predicted 71.9 48 0.001 31.9 10.4 59 54-112 420-478 (518)
233 PF05529 Bap31: B-cell recepto 71.6 48 0.001 26.7 9.2 36 68-103 154-189 (192)
234 PRK13182 racA polar chromosome 71.5 43 0.00093 27.5 8.9 23 95-117 124-146 (175)
235 PF15035 Rootletin: Ciliary ro 71.2 57 0.0012 26.9 9.7 58 55-112 68-125 (182)
236 KOG2264 Exostosin EXT1L [Signa 71.0 41 0.00089 33.3 9.9 56 53-108 92-147 (907)
237 PRK14160 heat shock protein Gr 70.8 54 0.0012 27.9 9.6 47 54-100 54-100 (211)
238 PF05377 FlaC_arch: Flagella a 70.8 21 0.00046 24.4 5.8 21 60-80 13-33 (55)
239 PRK14872 rod shape-determining 70.7 9.5 0.00021 34.6 5.3 28 82-109 57-84 (337)
240 PF05837 CENP-H: Centromere pr 70.4 26 0.00056 26.2 6.9 28 93-120 62-89 (106)
241 PF10205 KLRAQ: Predicted coil 70.4 46 0.00099 25.4 10.5 58 59-116 17-74 (102)
242 PHA02562 46 endonuclease subun 70.3 74 0.0016 29.3 11.2 7 95-101 392-398 (562)
243 PRK05431 seryl-tRNA synthetase 70.0 73 0.0016 29.3 11.0 28 86-113 70-97 (425)
244 COG2433 Uncharacterized conser 70.0 62 0.0013 31.9 10.8 18 51-68 447-464 (652)
245 KOG0161 Myosin class II heavy 69.5 1.1E+02 0.0025 33.9 13.6 81 35-115 896-983 (1930)
246 PF15030 DUF4527: Protein of u 69.5 81 0.0018 27.9 12.6 6 21-26 9-14 (277)
247 PF04728 LPP: Lipoprotein leuc 69.3 34 0.00073 23.5 8.3 31 55-85 4-34 (56)
248 PRK11147 ABC transporter ATPas 69.3 32 0.00069 32.8 8.8 57 54-110 568-630 (635)
249 PHA03011 hypothetical protein; 69.1 45 0.00098 25.8 7.9 52 54-105 64-115 (120)
250 KOG0243 Kinesin-like protein [ 69.1 69 0.0015 33.3 11.4 49 58-106 445-493 (1041)
251 PF04568 IATP: Mitochondrial A 68.9 38 0.00082 25.6 7.5 41 39-79 54-94 (100)
252 KOG1029 Endocytic adaptor prot 68.7 1.2E+02 0.0027 31.1 12.8 22 93-114 434-455 (1118)
253 PF10211 Ax_dynein_light: Axon 68.7 65 0.0014 26.5 11.6 61 52-112 125-186 (189)
254 PF01166 TSC22: TSC-22/dip/bun 68.6 13 0.00027 25.9 4.4 24 57-80 17-40 (59)
255 PF13094 CENP-Q: CENP-Q, a CEN 68.4 56 0.0012 25.6 9.5 39 74-112 40-78 (160)
256 PF06810 Phage_GP20: Phage min 68.2 60 0.0013 25.9 9.1 33 52-84 32-67 (155)
257 KOG0288 WD40 repeat protein Ti 68.1 46 0.001 31.4 9.3 60 57-116 44-104 (459)
258 PF05700 BCAS2: Breast carcino 68.1 71 0.0015 26.7 10.4 24 56-79 138-161 (221)
259 PF06103 DUF948: Bacterial pro 67.9 41 0.00088 23.9 10.3 59 56-114 28-86 (90)
260 TIGR02209 ftsL_broad cell divi 67.8 24 0.00052 24.5 5.9 29 52-80 29-57 (85)
261 PF13815 Dzip-like_N: Iguana/D 67.7 28 0.0006 26.3 6.7 36 73-108 78-113 (118)
262 PF00261 Tropomyosin: Tropomyo 67.4 52 0.0011 27.6 8.9 13 56-68 94-106 (237)
263 PF05266 DUF724: Protein of un 67.1 72 0.0016 26.4 12.8 70 46-115 109-178 (190)
264 KOG4360 Uncharacterized coiled 67.1 45 0.00098 32.3 9.1 56 51-106 195-250 (596)
265 PF09486 HrpB7: Bacterial type 66.8 69 0.0015 26.1 9.9 40 73-112 77-116 (158)
266 TIGR00414 serS seryl-tRNA synt 66.8 54 0.0012 30.1 9.5 54 59-112 42-99 (418)
267 PF04012 PspA_IM30: PspA/IM30 66.6 70 0.0015 26.1 10.5 32 73-104 110-141 (221)
268 PF13863 DUF4200: Domain of un 66.3 51 0.0011 24.4 9.3 38 83-120 82-119 (126)
269 KOG0996 Structural maintenance 66.3 1E+02 0.0023 32.6 12.1 89 43-131 531-628 (1293)
270 PRK14127 cell division protein 66.2 49 0.0011 25.4 7.7 39 55-107 31-69 (109)
271 KOG0980 Actin-binding protein 66.0 1.1E+02 0.0023 31.7 11.8 31 42-72 454-484 (980)
272 TIGR00606 rad50 rad50. This fa 66.0 1.4E+02 0.003 31.3 13.2 26 42-67 845-870 (1311)
273 PF08232 Striatin: Striatin fa 65.4 29 0.00062 27.2 6.5 45 57-101 28-72 (134)
274 PF09789 DUF2353: Uncharacteri 65.3 1.1E+02 0.0023 27.7 11.1 46 71-116 68-113 (319)
275 KOG2129 Uncharacterized conser 65.3 14 0.00031 34.9 5.5 57 57-113 46-102 (552)
276 PF05600 DUF773: Protein of un 65.3 66 0.0014 30.6 9.9 63 52-114 430-492 (507)
277 PF00769 ERM: Ezrin/radixin/mo 65.1 88 0.0019 26.7 12.2 58 55-112 62-119 (246)
278 PF04899 MbeD_MobD: MbeD/MobD 65.1 47 0.001 23.6 8.3 48 61-108 21-68 (70)
279 KOG0996 Structural maintenance 65.1 2E+02 0.0043 30.7 14.3 51 58-108 817-877 (1293)
280 PTZ00464 SNF-7-like protein; P 64.9 85 0.0018 26.5 10.2 29 61-89 68-96 (211)
281 PRK11546 zraP zinc resistance 64.8 46 0.001 26.7 7.6 54 53-106 60-113 (143)
282 PF07200 Mod_r: Modifier of ru 64.6 63 0.0014 24.9 9.2 76 37-114 39-114 (150)
283 PRK12705 hypothetical protein; 64.4 1.4E+02 0.003 28.7 14.2 61 38-101 54-114 (508)
284 PF14817 HAUS5: HAUS augmin-li 64.3 69 0.0015 31.4 10.1 62 48-109 73-134 (632)
285 PF10473 CENP-F_leu_zip: Leuci 64.3 72 0.0016 25.4 11.9 59 59-117 43-101 (140)
286 PF10883 DUF2681: Protein of u 64.1 57 0.0012 24.2 7.8 54 59-118 28-81 (87)
287 PF06103 DUF948: Bacterial pro 64.0 49 0.0011 23.4 8.9 56 54-109 33-88 (90)
288 KOG0804 Cytoplasmic Zn-finger 63.9 1E+02 0.0023 29.4 10.8 45 71-115 385-429 (493)
289 PF09602 PhaP_Bmeg: Polyhydrox 63.9 83 0.0018 26.0 10.2 56 59-114 46-103 (165)
290 PF15290 Syntaphilin: Golgi-lo 63.8 1E+02 0.0022 27.7 10.2 9 108-116 161-169 (305)
291 PRK10963 hypothetical protein; 63.4 31 0.00066 28.9 6.7 54 59-116 42-98 (223)
292 COG2919 Septum formation initi 63.3 33 0.00072 26.0 6.3 35 70-104 52-86 (117)
293 PRK05431 seryl-tRNA synthetase 63.2 72 0.0016 29.3 9.6 62 55-116 29-93 (425)
294 PF13870 DUF4201: Domain of un 63.0 76 0.0016 25.3 10.3 38 78-115 80-117 (177)
295 KOG0999 Microtubule-associated 63.0 44 0.00096 32.9 8.3 67 54-120 8-74 (772)
296 PF09730 BicD: Microtubule-ass 63.0 56 0.0012 32.6 9.3 52 55-106 70-121 (717)
297 PF13874 Nup54: Nucleoporin co 62.8 71 0.0015 24.9 9.1 30 87-116 70-99 (141)
298 KOG4807 F-actin binding protei 62.8 99 0.0021 29.4 10.3 44 69-112 443-486 (593)
299 PF15188 CCDC-167: Coiled-coil 62.7 58 0.0013 24.0 7.2 57 54-110 5-64 (85)
300 PF04136 Sec34: Sec34-like fam 62.6 78 0.0017 25.2 10.8 65 53-117 6-70 (157)
301 PF12711 Kinesin-relat_1: Kine 62.6 42 0.00091 24.8 6.5 38 66-103 22-65 (86)
302 KOG0804 Cytoplasmic Zn-finger 62.6 77 0.0017 30.2 9.7 73 36-108 367-447 (493)
303 PF07926 TPR_MLP1_2: TPR/MLP1/ 62.6 68 0.0015 24.6 10.3 19 91-109 100-118 (132)
304 KOG0995 Centromere-associated 62.6 72 0.0016 31.1 9.7 61 52-112 444-508 (581)
305 PF09766 FimP: Fms-interacting 62.5 84 0.0018 28.3 9.8 45 73-117 106-150 (355)
306 PF13942 Lipoprotein_20: YfhG 62.5 66 0.0014 26.9 8.3 37 81-117 129-165 (179)
307 PF14645 Chibby: Chibby family 62.4 43 0.00093 25.8 6.8 37 59-95 76-112 (116)
308 PF15619 Lebercilin: Ciliary p 62.3 91 0.002 25.9 11.3 32 44-75 8-40 (194)
309 PF06216 RTBV_P46: Rice tungro 62.2 71 0.0015 28.6 8.9 34 54-87 78-111 (389)
310 PF04375 HemX: HemX; InterPro 62.1 72 0.0016 28.7 9.3 25 63-87 95-119 (372)
311 TIGR00219 mreC rod shape-deter 62.1 39 0.00086 29.4 7.4 25 83-107 67-91 (283)
312 PF09727 CortBP2: Cortactin-bi 61.8 97 0.0021 26.1 12.2 50 63-112 136-185 (192)
313 PF11544 Spc42p: Spindle pole 61.6 60 0.0013 23.6 7.0 42 59-100 10-51 (76)
314 PRK11281 hypothetical protein; 61.6 1.5E+02 0.0032 31.2 12.3 83 32-114 159-252 (1113)
315 PF10359 Fmp27_WPPW: RNA pol I 61.5 29 0.00063 32.4 6.8 60 55-119 171-230 (475)
316 PF07851 TMPIT: TMPIT-like pro 61.4 1.2E+02 0.0025 27.6 10.3 25 56-80 6-30 (330)
317 PF15233 SYCE1: Synaptonemal c 61.3 83 0.0018 25.2 9.5 39 56-94 8-46 (134)
318 KOG4674 Uncharacterized conser 61.2 72 0.0016 35.1 10.2 65 46-110 1235-1299(1822)
319 PF12711 Kinesin-relat_1: Kine 61.0 36 0.00079 25.1 5.9 42 62-105 45-86 (86)
320 KOG0933 Structural maintenance 60.9 2.1E+02 0.0047 30.1 13.0 61 52-112 813-873 (1174)
321 COG1792 MreC Cell shape-determ 60.8 33 0.00072 30.0 6.7 9 157-165 145-153 (284)
322 KOG1029 Endocytic adaptor prot 60.7 2.1E+02 0.0045 29.6 12.7 39 77-115 425-463 (1118)
323 PF05911 DUF869: Plant protein 60.4 83 0.0018 31.7 10.0 57 54-110 92-169 (769)
324 PRK10698 phage shock protein P 60.3 1E+02 0.0022 25.9 11.3 60 61-120 99-158 (222)
325 PF09728 Taxilin: Myosin-like 60.2 1.2E+02 0.0026 26.9 10.2 51 52-102 48-98 (309)
326 KOG4673 Transcription factor T 60.1 55 0.0012 33.0 8.5 49 62-110 705-753 (961)
327 KOG2391 Vacuolar sorting prote 59.9 69 0.0015 29.5 8.6 38 63-100 241-278 (365)
328 PRK04863 mukB cell division pr 59.8 1.8E+02 0.0039 31.5 12.8 64 55-118 356-426 (1486)
329 KOG0709 CREB/ATF family transc 59.7 33 0.00071 32.6 6.8 49 30-78 252-310 (472)
330 PF14282 FlxA: FlxA-like prote 59.7 71 0.0015 23.8 8.4 11 58-68 30-40 (106)
331 KOG4674 Uncharacterized conser 59.6 1.2E+02 0.0026 33.5 11.5 70 48-117 655-724 (1822)
332 PF09726 Macoilin: Transmembra 59.5 1.9E+02 0.0041 28.7 14.1 31 47-77 481-511 (697)
333 PRK10920 putative uroporphyrin 59.3 99 0.0022 28.5 9.7 37 63-99 101-139 (390)
334 PF06428 Sec2p: GDP/GTP exchan 59.3 37 0.00081 25.5 5.9 64 53-116 7-71 (100)
335 KOG1265 Phospholipase C [Lipid 59.2 2.2E+02 0.0048 29.8 12.6 57 18-74 1012-1069(1189)
336 PF15369 KIAA1328: Uncharacter 59.1 1.2E+02 0.0027 27.6 10.0 45 43-87 16-66 (328)
337 PF03980 Nnf1: Nnf1 ; InterPr 58.9 23 0.0005 26.1 4.7 31 73-103 78-108 (109)
338 PF08537 NBP1: Fungal Nap bind 58.9 1.4E+02 0.0031 27.1 12.6 84 33-116 122-223 (323)
339 PTZ00454 26S protease regulato 58.8 52 0.0011 30.0 7.9 14 93-106 47-60 (398)
340 PRK05892 nucleoside diphosphat 58.7 89 0.0019 25.0 8.4 62 54-117 11-75 (158)
341 PF08912 Rho_Binding: Rho Bind 58.7 64 0.0014 23.0 8.9 33 59-91 1-33 (69)
342 PF09763 Sec3_C: Exocyst compl 58.5 56 0.0012 31.6 8.4 64 53-116 36-99 (701)
343 PRK11281 hypothetical protein; 58.5 2.4E+02 0.0052 29.6 13.2 58 63-120 280-337 (1113)
344 PF10498 IFT57: Intra-flagella 58.4 1.5E+02 0.0032 27.1 10.8 53 61-113 266-318 (359)
345 PF13815 Dzip-like_N: Iguana/D 58.3 78 0.0017 23.9 7.6 36 68-103 80-115 (118)
346 PF06548 Kinesin-related: Kine 58.3 1.2E+02 0.0025 29.1 10.0 55 53-107 384-473 (488)
347 PF00435 Spectrin: Spectrin re 58.2 54 0.0012 22.0 9.7 23 91-113 75-97 (105)
348 PF04375 HemX: HemX; InterPro 58.2 1.4E+02 0.003 26.9 10.4 51 56-106 62-117 (372)
349 PF15070 GOLGA2L5: Putative go 58.2 1.8E+02 0.0039 28.5 11.7 48 69-116 88-135 (617)
350 PRK14143 heat shock protein Gr 57.8 96 0.0021 26.7 8.9 22 56-77 83-104 (238)
351 PF12777 MT: Microtubule-bindi 57.7 60 0.0013 28.8 7.9 41 40-80 228-268 (344)
352 PF15397 DUF4618: Domain of un 57.7 1.3E+02 0.0029 26.4 11.0 47 35-81 62-108 (258)
353 KOG2189 Vacuolar H+-ATPase V0 57.7 1.2E+02 0.0025 30.9 10.4 73 51-123 53-140 (829)
354 PF10234 Cluap1: Clusterin-ass 57.6 90 0.002 27.5 8.8 70 52-124 156-225 (267)
355 PF04728 LPP: Lipoprotein leuc 57.4 60 0.0013 22.3 8.4 44 61-104 3-46 (56)
356 TIGR02977 phageshock_pspA phag 57.3 1.1E+02 0.0024 25.3 9.6 46 64-109 102-147 (219)
357 PF06419 COG6: Conserved oligo 57.2 1E+02 0.0023 29.7 9.9 65 52-116 43-107 (618)
358 PF04859 DUF641: Plant protein 56.9 44 0.00094 26.4 6.1 50 59-108 78-127 (131)
359 PF14712 Snapin_Pallidin: Snap 56.9 67 0.0015 22.7 9.4 62 55-116 15-84 (92)
360 PLN02678 seryl-tRNA synthetase 56.9 94 0.002 29.1 9.3 54 60-113 46-102 (448)
361 PF10779 XhlA: Haemolysin XhlA 56.9 63 0.0014 22.3 7.6 37 77-113 15-51 (71)
362 KOG0995 Centromere-associated 56.8 1.3E+02 0.0027 29.5 10.2 26 85-110 335-360 (581)
363 KOG3335 Predicted coiled-coil 56.7 30 0.00065 29.0 5.4 31 31-67 89-119 (181)
364 PRK10722 hypothetical protein; 56.7 50 0.0011 28.9 6.9 36 81-116 175-210 (247)
365 TIGR03185 DNA_S_dndD DNA sulfu 56.7 66 0.0014 30.9 8.5 21 93-113 266-286 (650)
366 PF11382 DUF3186: Protein of u 56.0 35 0.00076 30.1 6.1 27 55-81 33-59 (308)
367 TIGR01000 bacteriocin_acc bact 55.8 1.4E+02 0.0029 27.4 10.1 61 57-117 239-312 (457)
368 KOG3091 Nuclear pore complex, 55.4 1.2E+02 0.0027 29.1 9.8 22 90-111 412-433 (508)
369 TIGR03513 GldL_gliding gliding 55.3 1.3E+02 0.0028 25.5 12.8 66 49-114 129-197 (202)
370 PF12795 MscS_porin: Mechanose 55.1 1.1E+02 0.0025 25.5 8.8 55 58-112 82-136 (240)
371 PF05911 DUF869: Plant protein 55.0 94 0.002 31.3 9.4 63 54-116 631-693 (769)
372 PF03670 UPF0184: Uncharacteri 54.9 84 0.0018 23.2 7.4 42 59-100 31-72 (83)
373 PF07926 TPR_MLP1_2: TPR/MLP1/ 54.9 94 0.002 23.8 11.0 16 89-104 66-81 (132)
374 PF11544 Spc42p: Spindle pole 54.7 80 0.0017 22.9 9.2 36 81-116 11-46 (76)
375 PF05529 Bap31: B-cell recepto 54.7 1.1E+02 0.0024 24.6 8.9 28 88-115 153-180 (192)
376 PRK06975 bifunctional uroporph 54.6 1.4E+02 0.003 29.2 10.3 50 52-101 376-426 (656)
377 PRK14148 heat shock protein Gr 54.1 1.3E+02 0.0028 25.2 9.1 38 61-98 40-77 (195)
378 PRK03992 proteasome-activating 54.0 52 0.0011 29.6 7.0 20 89-108 29-48 (389)
379 KOG0018 Structural maintenance 53.7 3E+02 0.0064 29.1 12.8 99 5-117 641-739 (1141)
380 PF10234 Cluap1: Clusterin-ass 53.6 1.1E+02 0.0024 27.0 8.7 36 73-108 181-216 (267)
381 TIGR00606 rad50 rad50. This fa 53.6 2E+02 0.0043 30.2 11.9 61 52-112 1026-1091(1311)
382 COG5185 HEC1 Protein involved 53.6 82 0.0018 30.5 8.3 57 53-109 486-546 (622)
383 PF04871 Uso1_p115_C: Uso1 / p 53.5 1.1E+02 0.0023 24.0 10.5 48 61-108 41-89 (136)
384 PF13118 DUF3972: Protein of u 53.4 74 0.0016 25.1 6.9 47 54-100 78-124 (126)
385 TIGR01730 RND_mfp RND family e 53.4 1.3E+02 0.0029 25.0 9.3 32 84-115 104-135 (322)
386 PF10046 BLOC1_2: Biogenesis o 53.4 88 0.0019 23.0 8.1 9 59-67 47-55 (99)
387 KOG4687 Uncharacterized coiled 53.3 1.1E+02 0.0025 27.7 8.8 63 54-116 9-71 (389)
388 PTZ00454 26S protease regulato 53.3 70 0.0015 29.2 7.7 28 88-115 35-62 (398)
389 PF06698 DUF1192: Protein of u 53.2 58 0.0013 22.4 5.5 23 56-78 23-45 (59)
390 PF12709 Kinetocho_Slk19: Cent 53.2 92 0.002 23.1 8.8 24 59-82 47-70 (87)
391 PF05667 DUF812: Protein of un 52.9 1.1E+02 0.0024 29.7 9.4 46 54-99 335-380 (594)
392 TIGR02977 phageshock_pspA phag 52.6 1.3E+02 0.0029 24.9 10.4 49 54-102 99-147 (219)
393 PF05557 MAD: Mitotic checkpoi 52.5 78 0.0017 30.9 8.3 20 93-112 610-629 (722)
394 TIGR03495 phage_LysB phage lys 52.5 1.2E+02 0.0025 24.1 10.5 57 60-116 32-88 (135)
395 PF13874 Nup54: Nucleoporin co 52.3 60 0.0013 25.3 6.3 52 61-112 72-123 (141)
396 PRK15178 Vi polysaccharide exp 52.3 83 0.0018 29.5 8.1 23 83-105 315-337 (434)
397 COG3879 Uncharacterized protei 52.2 89 0.0019 27.3 7.8 30 58-87 54-83 (247)
398 PF15619 Lebercilin: Ciliary p 52.2 1.4E+02 0.003 24.8 9.4 17 52-68 94-110 (194)
399 PF07407 Seadorna_VP6: Seadorn 52.1 22 0.00048 32.7 4.2 30 56-85 34-63 (420)
400 COG4372 Uncharacterized protei 52.0 2.2E+02 0.0047 27.1 12.1 75 42-116 118-192 (499)
401 PLN03188 kinesin-12 family pro 51.9 1.4E+02 0.0031 31.8 10.4 54 53-106 1154-1242(1320)
402 PF05600 DUF773: Protein of un 51.8 1E+02 0.0022 29.3 8.8 50 51-100 443-492 (507)
403 PF01486 K-box: K-box region; 51.7 45 0.00099 24.2 5.2 16 87-102 73-88 (100)
404 PF11853 DUF3373: Protein of u 51.7 13 0.00028 35.3 2.8 10 57-66 34-43 (489)
405 PF00261 Tropomyosin: Tropomyo 51.5 1.4E+02 0.0031 24.9 14.1 66 47-112 162-227 (237)
406 PRK14872 rod shape-determining 51.5 53 0.0012 29.8 6.6 16 65-80 61-76 (337)
407 COG1730 GIM5 Predicted prefold 51.5 1E+02 0.0022 24.8 7.5 38 59-96 99-136 (145)
408 PF05103 DivIVA: DivIVA protei 51.4 8.3 0.00018 28.8 1.2 34 78-111 28-61 (131)
409 PF08961 DUF1875: Domain of un 51.4 5 0.00011 34.8 0.0 43 52-94 120-162 (243)
410 PF12808 Mto2_bdg: Micro-tubul 51.3 31 0.00067 23.3 3.8 26 56-81 24-49 (52)
411 PF07200 Mod_r: Modifier of ru 51.3 1.1E+02 0.0024 23.5 9.4 48 59-106 39-86 (150)
412 PF07047 OPA3: Optic atrophy 3 51.3 38 0.00081 26.4 4.9 37 31-73 95-131 (134)
413 PLN02320 seryl-tRNA synthetase 51.2 2.3E+02 0.005 27.1 11.3 56 55-110 94-158 (502)
414 KOG4807 F-actin binding protei 51.2 1.6E+02 0.0034 28.1 9.6 57 50-106 389-459 (593)
415 TIGR01005 eps_transp_fam exopo 51.1 2.2E+02 0.0048 27.6 11.2 75 39-113 186-268 (754)
416 PLN02678 seryl-tRNA synthetase 51.0 1.3E+02 0.0028 28.2 9.2 63 54-116 33-98 (448)
417 TIGR00383 corA magnesium Mg(2+ 50.8 1.1E+02 0.0023 26.2 8.1 20 104-123 260-279 (318)
418 PF10828 DUF2570: Protein of u 50.8 1E+02 0.0022 23.0 10.7 49 56-104 34-82 (110)
419 TIGR03185 DNA_S_dndD DNA sulfu 50.6 2.4E+02 0.0052 27.2 12.0 38 59-96 426-463 (650)
420 PF09006 Surfac_D-trimer: Lung 50.6 36 0.00079 22.5 4.0 26 92-117 2-27 (46)
421 KOG0483 Transcription factor H 50.5 29 0.00064 29.2 4.5 48 67-114 104-151 (198)
422 PF11180 DUF2968: Protein of u 50.5 1.6E+02 0.0034 25.0 10.5 37 82-118 147-183 (192)
423 PF08334 T2SG: Type II secreti 50.3 54 0.0012 24.0 5.4 32 93-124 6-37 (108)
424 PF15397 DUF4618: Domain of un 50.2 1.8E+02 0.0039 25.6 12.5 51 62-112 180-230 (258)
425 PF00769 ERM: Ezrin/radixin/mo 50.2 1.6E+02 0.0035 25.1 12.2 44 61-104 75-118 (246)
426 KOG4603 TBP-1 interacting prot 50.2 1.6E+02 0.0034 24.9 9.0 58 53-110 85-144 (201)
427 KOG4436 Predicted GTPase activ 50.1 11 0.00024 38.1 2.1 65 54-120 829-893 (948)
428 PF04859 DUF641: Plant protein 50.0 91 0.002 24.7 6.9 44 54-97 87-130 (131)
429 PF04871 Uso1_p115_C: Uso1 / p 50.0 1.2E+02 0.0027 23.7 9.9 19 56-74 57-75 (136)
430 PF05557 MAD: Mitotic checkpoi 49.8 1.3E+02 0.0028 29.4 9.4 17 82-98 566-582 (722)
431 COG2919 Septum formation initi 49.8 71 0.0015 24.2 6.2 43 73-115 48-90 (117)
432 PF05622 HOOK: HOOK protein; 49.5 5.5 0.00012 38.7 0.0 34 51-84 322-355 (713)
433 PF13805 Pil1: Eisosome compon 49.4 90 0.0019 27.6 7.5 53 32-84 143-195 (271)
434 PF07889 DUF1664: Protein of u 49.4 1.3E+02 0.0028 23.6 10.4 44 71-114 64-107 (126)
435 COG1340 Uncharacterized archae 49.3 2E+02 0.0043 25.8 13.4 48 57-104 30-77 (294)
436 KOG0964 Structural maintenance 49.3 2E+02 0.0044 30.2 10.7 56 46-101 410-465 (1200)
437 PRK03992 proteasome-activating 49.1 87 0.0019 28.2 7.6 22 91-112 24-45 (389)
438 COG3167 PilO Tfp pilus assembl 49.1 85 0.0018 26.8 7.0 49 60-112 48-96 (211)
439 cd07596 BAR_SNX The Bin/Amphip 48.5 1.3E+02 0.0028 23.5 12.8 62 37-101 114-182 (218)
440 PRK13923 putative spore coat p 48.2 1.6E+02 0.0034 24.4 9.9 47 73-119 109-155 (170)
441 COG3159 Uncharacterized protei 48.1 1.3E+02 0.0029 25.8 8.1 53 60-116 44-99 (218)
442 TIGR02231 conserved hypothetic 48.1 2.3E+02 0.0051 26.3 13.1 43 73-115 129-171 (525)
443 PF06008 Laminin_I: Laminin Do 48.0 1.7E+02 0.0037 24.7 10.1 63 53-115 44-106 (264)
444 COG4985 ABC-type phosphate tra 47.9 1.1E+02 0.0023 27.2 7.5 29 85-113 217-245 (289)
445 PF10267 Tmemb_cc2: Predicted 47.5 2.4E+02 0.0051 26.2 12.9 15 89-103 276-290 (395)
446 cd07429 Cby_like Chibby, a nuc 47.5 53 0.0012 25.2 5.1 17 85-101 82-98 (108)
447 PF05278 PEARLI-4: Arabidopsis 47.5 2E+02 0.0044 25.4 14.0 58 56-113 202-259 (269)
448 PF07558 Shugoshin_N: Shugoshi 47.3 26 0.00057 22.7 2.9 41 35-76 3-43 (46)
449 PF04420 CHD5: CHD5-like prote 47.0 1.3E+02 0.0028 24.0 7.6 51 56-106 42-97 (161)
450 TIGR02132 phaR_Bmeg polyhydrox 47.0 1.8E+02 0.0038 24.6 8.5 59 55-113 80-138 (189)
451 PRK09546 zntB zinc transporter 46.7 1.9E+02 0.0042 25.0 9.4 8 116-123 278-285 (324)
452 PF14782 BBS2_C: Ciliary BBSom 46.6 2.4E+02 0.0053 26.3 10.2 70 46-115 320-398 (431)
453 PRK14158 heat shock protein Gr 46.6 1.7E+02 0.0038 24.4 8.7 18 58-75 58-75 (194)
454 PF03961 DUF342: Protein of un 46.5 1.9E+02 0.0041 26.6 9.5 56 53-108 347-408 (451)
455 PF10046 BLOC1_2: Biogenesis o 46.5 1.2E+02 0.0025 22.3 9.6 48 61-108 21-68 (99)
456 TIGR02231 conserved hypothetic 46.3 2.5E+02 0.0054 26.2 12.6 48 63-110 126-173 (525)
457 TIGR02680 conserved hypothetic 46.1 4E+02 0.0086 28.4 13.6 16 52-67 880-895 (1353)
458 TIGR01010 BexC_CtrB_KpsE polys 45.8 2.1E+02 0.0045 25.1 9.4 38 76-113 215-259 (362)
459 KOG0933 Structural maintenance 45.2 4E+02 0.0087 28.2 12.9 59 56-114 789-847 (1174)
460 KOG0612 Rho-associated, coiled 45.1 2.3E+02 0.005 30.3 10.5 69 49-117 474-543 (1317)
461 PF12128 DUF3584: Protein of u 45.0 2.5E+02 0.0055 29.3 11.0 21 92-112 514-534 (1201)
462 KOG4797 Transcriptional regula 44.9 54 0.0012 25.6 4.8 14 29-42 53-66 (123)
463 KOG1937 Uncharacterized conser 44.9 2.7E+02 0.0059 26.8 10.2 78 23-100 402-520 (521)
464 PRK12704 phosphodiesterase; Pr 44.8 2.8E+02 0.0062 26.4 13.8 8 114-121 143-150 (520)
465 PRK10361 DNA recombination pro 44.6 2.9E+02 0.0062 26.4 11.4 19 61-79 67-85 (475)
466 PRK09413 IS2 repressor TnpA; R 44.5 73 0.0016 23.9 5.5 30 87-116 76-105 (121)
467 KOG0483 Transcription factor H 44.4 46 0.001 28.0 4.7 43 65-107 109-151 (198)
468 cd07429 Cby_like Chibby, a nuc 44.3 59 0.0013 25.0 4.9 22 62-83 80-101 (108)
469 PF04999 FtsL: Cell division p 44.3 47 0.001 23.8 4.2 25 56-80 44-68 (97)
470 KOG3433 Protein involved in me 44.1 2E+02 0.0044 24.4 9.7 67 54-120 81-147 (203)
471 PRK09413 IS2 repressor TnpA; R 44.1 65 0.0014 24.2 5.2 17 83-99 86-102 (121)
472 KOG4370 Ral-GTPase effector RL 44.1 1E+02 0.0022 29.4 7.3 47 71-117 409-455 (514)
473 PF07246 Phlebovirus_NSM: Phle 43.9 2.3E+02 0.005 25.1 10.0 45 78-122 198-242 (264)
474 cd07666 BAR_SNX7 The Bin/Amphi 43.9 2.1E+02 0.0046 24.7 10.0 48 50-100 159-206 (243)
475 COG1382 GimC Prefoldin, chaper 43.9 1.1E+02 0.0024 23.9 6.5 37 79-115 74-110 (119)
476 KOG3564 GTPase-activating prot 43.9 3E+02 0.0066 26.8 10.4 60 54-113 49-108 (604)
477 TIGR03319 YmdA_YtgF conserved 43.8 2.9E+02 0.0064 26.2 13.8 9 113-121 136-144 (514)
478 PRK00409 recombination and DNA 43.6 2.5E+02 0.0054 28.1 10.3 63 54-116 520-583 (782)
479 PF10168 Nup88: Nuclear pore c 43.5 3.1E+02 0.0067 27.3 10.9 66 50-115 554-619 (717)
480 PF15058 Speriolin_N: Sperioli 43.5 31 0.00066 29.3 3.5 27 76-102 6-32 (200)
481 PF15369 KIAA1328: Uncharacter 43.5 2.6E+02 0.0056 25.5 10.9 60 54-113 8-71 (328)
482 PRK13182 racA polar chromosome 43.4 1.8E+02 0.004 23.8 8.5 31 83-113 119-149 (175)
483 PF06320 GCN5L1: GCN5-like pro 43.3 1.5E+02 0.0033 22.8 8.1 56 55-110 34-89 (121)
484 PF08826 DMPK_coil: DMPK coile 43.2 1.1E+02 0.0024 21.1 9.7 45 65-109 15-59 (61)
485 KOG2185 Predicted RNA-processi 43.0 1.9E+02 0.0042 27.5 8.9 73 37-110 397-479 (486)
486 PF06818 Fez1: Fez1; InterPro 43.0 1.5E+02 0.0033 25.1 7.6 64 50-113 76-162 (202)
487 PF14645 Chibby: Chibby family 42.9 1.4E+02 0.003 22.9 6.9 47 59-105 69-115 (116)
488 PF10226 DUF2216: Uncharacteri 42.9 2.1E+02 0.0045 24.3 11.8 83 33-115 23-127 (195)
489 KOG2991 Splicing regulator [RN 42.9 1.3E+02 0.0029 26.9 7.5 60 59-118 215-279 (330)
490 PF08232 Striatin: Striatin fa 42.8 1.6E+02 0.0035 22.9 9.5 58 56-113 6-63 (134)
491 PF11068 YlqD: YlqD protein; 42.7 1.6E+02 0.0036 23.0 9.4 59 53-111 26-89 (131)
492 PF07851 TMPIT: TMPIT-like pro 42.6 2.3E+02 0.0049 25.8 9.1 63 58-120 1-63 (330)
493 PF10205 KLRAQ: Predicted coil 42.6 1.5E+02 0.0033 22.6 8.9 54 53-106 18-71 (102)
494 KOG0957 PHD finger protein [Ge 42.1 1.6E+02 0.0034 28.9 8.3 66 50-115 434-499 (707)
495 COG0598 CorA Mg2+ and Co2+ tra 41.7 2.4E+02 0.0052 24.6 9.9 81 53-158 219-299 (322)
496 PF09766 FimP: Fms-interacting 41.6 1.4E+02 0.0031 26.9 7.7 67 49-115 103-169 (355)
497 KOG0999 Microtubule-associated 41.6 3.7E+02 0.008 26.8 12.3 87 31-117 115-215 (772)
498 PRK14154 heat shock protein Gr 41.5 2.2E+02 0.0047 24.2 8.4 56 62-117 53-114 (208)
499 KOG2751 Beclin-like protein [S 41.4 3.2E+02 0.0069 26.0 10.7 71 45-115 155-230 (447)
500 TIGR01069 mutS2 MutS2 family p 41.3 2.8E+02 0.0061 27.7 10.3 63 54-116 515-578 (771)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.45 E-value=7.3e-13 Score=91.17 Aligned_cols=62 Identities=34% Similarity=0.516 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 044691 30 MDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESEN 91 (172)
Q Consensus 30 ~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN 91 (172)
.|+|+.+|+++||+||++||.||+.|+.+|+.+|..|+.+|..|..++..|...+..|..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999999988877666655555444
No 2
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.43 E-value=2.4e-12 Score=110.15 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 30 MDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 30 ~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
-|||-.||+++||.+|+-+|.|||+++++++.+|.+|..||+.|..++..|+.+.+.|..+|..|+.++.+|+..|..++
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred HHH
Q 044691 110 EII 112 (172)
Q Consensus 110 ~il 112 (172)
..-
T Consensus 146 ~~~ 148 (292)
T KOG4005|consen 146 QQQ 148 (292)
T ss_pred HHH
Confidence 654
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.39 E-value=2.9e-12 Score=88.03 Aligned_cols=62 Identities=29% Similarity=0.527 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENS 92 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~ 92 (172)
+.++.+|+++||+||++||.||+.++++|+.+|..|..+|..|..++..|...+..|..+|.
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35788999999999999999999999999999999999999999999999888888888773
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.25 E-value=1.2e-11 Score=115.22 Aligned_cols=65 Identities=31% Similarity=0.400 Sum_probs=62.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRA 96 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRa 96 (172)
-||..|||+|||||..||+|||+|+..||+++..|.+||+.|+.++..|++++..+++||.+|+-
T Consensus 280 ~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 280 LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 47788999999999999999999999999999999999999999999999999999999999964
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.18 E-value=2.1e-10 Score=76.71 Aligned_cols=51 Identities=33% Similarity=0.567 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q 82 (172)
|+++.||. +||+||++||.||++++.+|+.+|..|..+|..|..++..|..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777787 9999999999999999999999999999999999888776653
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.12 E-value=1.9e-10 Score=100.78 Aligned_cols=55 Identities=27% Similarity=0.483 Sum_probs=51.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMN 86 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~ 86 (172)
.||+-|+++|||+||.+|+|||+|+..||.+|+.|+.+|..|..++..|++.|-.
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 5788899999999999999999999999999999999999999999998887743
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.79 E-value=1.3e-08 Score=93.71 Aligned_cols=68 Identities=28% Similarity=0.420 Sum_probs=58.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
-||-||+|+|.+||+.||+|||.|++.||.+|....+||++|.+++.. |+.+|.-|-+|+..|+..+.
T Consensus 250 LKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 250 LKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHHHHHh
Confidence 467789999999999999999999999999999999999999887765 56677777777777765543
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.00 E-value=9.8e-08 Score=70.12 Aligned_cols=52 Identities=25% Similarity=0.456 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 30 MDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 30 ~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
.+-|..||.++||.+|++||.||..++++|+.++..|+.+...|..++..+.
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~ 78 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELR 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458889999999999999999999999999999988776666655444443
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.95 E-value=4.5e-05 Score=66.33 Aligned_cols=42 Identities=26% Similarity=0.447 Sum_probs=37.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 044691 37 RMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSIN 78 (172)
Q Consensus 37 R~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~ 78 (172)
..++||++|.+||.||-+|+..||.+|..|..+|..|...+.
T Consensus 210 krlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~ 251 (279)
T KOG0837|consen 210 KRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELS 251 (279)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 368999999999999999999999999999988888765543
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.45 E-value=0.0014 Score=57.77 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=36.2
Q ss_pred hHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 044691 30 MDQRKRKR-MISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINI 79 (172)
Q Consensus 30 ~deRr~rR-~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~ 79 (172)
.++++.+| .+.|..+|-|.|+||+...++|+.++..|+++|.+|+.++..
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~ 273 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASE 273 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 456666799999999999999999988887666665554433
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.42 E-value=0.0008 Score=58.27 Aligned_cols=66 Identities=32% Similarity=0.490 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 30 MDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 30 ~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.+.+-..|..+|=+++||||.+.++..++...+|..| +.||..||.++..|+..|..|.
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~l---------------------eken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAEL---------------------EKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567899999999999999887666666665 4666677777777777777777
Q ss_pred HHHHHHh
Q 044691 110 EIISFLD 116 (172)
Q Consensus 110 ~il~~~~ 116 (172)
.++....
T Consensus 250 ~~~~~~~ 256 (269)
T KOG3119|consen 250 RLFLQLP 256 (269)
T ss_pred HHHHhhc
Confidence 7775544
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.03 E-value=0.011 Score=46.86 Aligned_cols=67 Identities=24% Similarity=0.422 Sum_probs=52.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
-|.+||-++||==|.-+|-|+.+.-++||.+-..|..+ ...|..||+.++.++..+..++..|..-
T Consensus 52 lKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qq--------------v~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 52 LKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQ--------------VEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47778999999999999999999888888777666544 3445567888888888888887766554
Q ss_pred H
Q 044691 112 I 112 (172)
Q Consensus 112 l 112 (172)
+
T Consensus 118 ~ 118 (135)
T KOG4196|consen 118 A 118 (135)
T ss_pred h
Confidence 4
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.01 Score=42.73 Aligned_cols=56 Identities=20% Similarity=0.305 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
+.=|.-+|..|+.+|..|..+...+.+....|+.||..|+.+....+.||++|-.-
T Consensus 20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34467788999999999999999999999999999999999999999999988543
No 14
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.67 E-value=0.043 Score=39.11 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQL-------RKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 55 ~leeLe~qv~~L-------~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
-++.|+.+|..+ +.++..|..+...+.+....|..||..|+.+-.....||..|-.-
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566665554 555555555555555556666666666666666666666655443
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.57 E-value=0.064 Score=38.24 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=11.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 044691 64 AQLRKDNHQIITSINIATQHYMNIESE 90 (172)
Q Consensus 64 ~~L~~EN~~L~~~l~~l~q~~~~le~E 90 (172)
.+|+...+.+...|..|+.....|..+
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 16
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.51 E-value=0.054 Score=38.12 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+..|+.+|.+|-..-.+|..++..|.++...+..|+..|..+...-+.|+..+-+-+..+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~l 61 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKAL 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555555555555555555555555555666666666666666666665555544443
No 17
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.51 E-value=0.034 Score=39.17 Aligned_cols=56 Identities=14% Similarity=0.290 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
..++.|-....+|+.||..|+.++..+...-..|...|..=|.++..+-.||.+|+
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 46788889999999999999999999999999999999999999999999998875
No 18
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=96.46 E-value=0.049 Score=39.04 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMN--------IESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~--------le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+.+.+.++..|++||-.|.-+|-.+.++... +..+|-.|+.++..|+..|+.+...|..++.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999888864 5789999999999999999999998876653
No 19
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.43 E-value=0.014 Score=38.15 Aligned_cols=42 Identities=31% Similarity=0.484 Sum_probs=33.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 65 QLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
+|+.+-..|+.....|...+..|..||..|++++..|..+++
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566777777888888888888888888888888888887764
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.42 E-value=0.05 Score=44.47 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=51.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 62 QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
....++.||..|..++..|.+++..|+.||..|..++..+....+.|-.|++....
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999999999999987754
No 21
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.35 E-value=0.035 Score=40.54 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.=|.-+|..|+.+|..|..++..+......|+.||..|+.+......||++|-.-+
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm 76 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34566777777777777777777777778899999999999999999988876544
No 22
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.32 E-value=0.033 Score=42.44 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
+|-.++..|+..-..|..++..|+.+...|..||..|+.+-..|+.+|..+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566667777777777777777888888888888888888888888877665
No 23
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.16 E-value=0.013 Score=56.14 Aligned_cols=72 Identities=26% Similarity=0.410 Sum_probs=53.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 36 KRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 36 rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
||.=+||.||+++|.||-..+..||.+|..|+++..+|..+-. .+..+-.+++.++.+|. .+|+..+
T Consensus 493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~-------~~d~~L~~~kqqls~L~------~~Vf~~l 559 (604)
T KOG3863|consen 493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERD-------ELDSTLGVMKQQLSELY------QEVFQQL 559 (604)
T ss_pred ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH------HHHHHHH
Confidence 5778999999999999999999999999999999888876433 23444555666666663 4555666
Q ss_pred hhcCC
Q 044691 116 DASNN 120 (172)
Q Consensus 116 ~~~~g 120 (172)
....|
T Consensus 560 rd~eg 564 (604)
T KOG3863|consen 560 RDEEG 564 (604)
T ss_pred hcccc
Confidence 54444
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.90 E-value=0.16 Score=42.68 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 54 KHLDDLMAQVAQLRKD----NHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 54 ~~leeLe~qv~~L~~E----N~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+.+++|+.+++.+..+ ..++...+....+....|+.||..|+.++..++.++..|+..++.++
T Consensus 100 ~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 100 NQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444332 33344445555556666777777777777777777666655555443
No 25
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.87 E-value=0.072 Score=40.92 Aligned_cols=51 Identities=18% Similarity=0.364 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
+|=.++..|+..-..|..++..|++....|..||..|+.+-..|+.+|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566666666666677777777777777777777777777777777765
No 26
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.70 E-value=0.077 Score=40.45 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
..+..|+.++..|-.+-..|+..+..+.+.-..|..||..||..+.++..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788999999999999999999999999999999999999999998865
No 27
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.60 E-value=0.085 Score=40.54 Aligned_cols=49 Identities=27% Similarity=0.313 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
..+..|+.++..+-.+-..|+..+..+.+.-..|..||..||..+.++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4578899999999999999999999999999999999999999999984
No 28
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.37 E-value=1.3 Score=38.89 Aligned_cols=91 Identities=23% Similarity=0.318 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 28 ALMDQRKRKRMIS-----NRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 28 ~~~deRr~rR~ls-----NRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
..++.||.|-... .|.-||-+.+ ...+.||+.+-..|+.||..|+.....|--+.+++..+-..|+.++++|.
T Consensus 68 EK~~RrKLKNRVAAQtaRDrKKaRm~em--e~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 68 EKVQRRKLKNRVAAQTARDRKKARMEEM--EYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 5566777774332 3333333222 24577899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 044691 103 HRLHSLNEIISFLDASNN 120 (172)
Q Consensus 103 ~rL~~l~~il~~~~~~~g 120 (172)
+....-+.+++.-..+.|
T Consensus 146 ~~~~~~~~v~eee~~~~g 163 (292)
T KOG4005|consen 146 QQQQHNTRVIEEENASAG 163 (292)
T ss_pred HHHHHhhHHHhhhhhccC
Confidence 988888888766554444
No 29
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.35 E-value=0.53 Score=45.05 Aligned_cols=84 Identities=19% Similarity=0.298 Sum_probs=71.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 33 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+.+..+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|..+..+++.++..|.+-+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi 229 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDI 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455777777777777778888889999999999999999999999999999999999999999999999999988887
Q ss_pred HHHh
Q 044691 113 SFLD 116 (172)
Q Consensus 113 ~~~~ 116 (172)
..+.
T Consensus 230 ~~l~ 233 (546)
T PF07888_consen 230 KTLT 233 (546)
T ss_pred HHHH
Confidence 7654
No 30
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=95.16 E-value=0.51 Score=33.59 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.|+.--....+.-+.....+..+...+.....+|+.|++++..|..++..|++-++++.
T Consensus 11 ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 11 ALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333344555666777788888888888899999999999999999999999998764
No 31
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=95.12 E-value=1.3 Score=39.44 Aligned_cols=86 Identities=21% Similarity=0.267 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 28 ALMDQRKRKRMISNRESARRSRMR--KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 28 ~~~deRr~rR~lsNRESARRSR~R--Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
...++|-+|=|++|-. -==.| =.-.++-|..++..|+.....+..++......+..+......|+.++.+|+..|
T Consensus 87 ~evEekyrkAMv~naQ---LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQ---LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999942 21111 223455566666666666666666666666666667777788888888888888
Q ss_pred HHHHHHHHHHh
Q 044691 106 HSLNEIISFLD 116 (172)
Q Consensus 106 ~~l~~il~~~~ 116 (172)
....++|..+.
T Consensus 164 ~~rdeli~khG 174 (302)
T PF09738_consen 164 KQRDELIEKHG 174 (302)
T ss_pred HHHHHHHHHCC
Confidence 88888886543
No 32
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=95.04 E-value=0.15 Score=39.41 Aligned_cols=49 Identities=24% Similarity=0.340 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
+=.+|..|+.....|.+++..+++++..+..||..|+-+...|+.||..
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3456677777777788888899999999999999999999999999987
No 33
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.86 E-value=0.44 Score=33.64 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
+.+++.+..+++....+|..|..+-.....++...-.+|..|++++..|+..|..+
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666666666666666666666666666666666665543
No 34
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.81 E-value=0.78 Score=35.82 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=61.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 34 KRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 34 r~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
.+.|=..-||..-....++...++.|...+..|+.++..+..++..+......+..++..+...+..+.+.++.+...+.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777788888888888888888888888888888888888777777777777777777777666665
Q ss_pred HH
Q 044691 114 FL 115 (172)
Q Consensus 114 ~~ 115 (172)
.+
T Consensus 126 ~~ 127 (151)
T PF11559_consen 126 QR 127 (151)
T ss_pred HH
Confidence 44
No 35
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=94.70 E-value=0.12 Score=48.63 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
-|..+++||++++.|+.|.+.+.++...+++++..++.||..|++++..+.
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345788999999999999999999999999999999999999999984433
No 36
>PRK11637 AmiB activator; Provisional
Probab=94.54 E-value=1.4 Score=40.07 Aligned_cols=64 Identities=13% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
...+..+.+++.++..|..+...+..++..+.+++..++.+=..|..++.++..+|..+...+.
T Consensus 64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666666666666666666666666666666666665555553
No 37
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.52 E-value=1.3 Score=36.23 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=13.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLR 95 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LR 95 (172)
+..|..|...|.-+++.+..++..|+.||..|-
T Consensus 146 ~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 146 NEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444443
No 38
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.44 E-value=0.35 Score=40.61 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
..+|-..|..|+.-|..|..++..+......++..|+.|..++..|+..++++...+...+.
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~ 64 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKA 64 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888888888888888888888888888888888888888888888777766644
No 39
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.07 E-value=2.2 Score=33.22 Aligned_cols=66 Identities=20% Similarity=0.310 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 48 SRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 48 SR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
+|.|-..+.++|..++..+..++..|...+..|+.++..++.+...+..+...|..+++.+...+.
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666666666666666666666555555555555555444443
No 40
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=94.00 E-value=0.86 Score=34.29 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIA--TQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l--~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
|+..++.|..++......-..+..++..+ ...++.|..+=..++.++..+..+++.++.++..+
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666677666666666666666677666 77778888888888888888888888888888766
No 41
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.91 E-value=0.4 Score=43.69 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 48 SRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 48 SR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
-=+|-+.+...||.-+.+++.||+.|..+++.+.+.+.+.+.|+..|..+++|-.+..+.|++
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~ 183 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELND 183 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566677778888888899999999999999999999999988887777666555555543
No 42
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.91 E-value=0.33 Score=31.64 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 72 QIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 72 ~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+|......|+..|..|.++|..|..+...|+..+..|...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778889999999999999999999999999999988765
No 43
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.90 E-value=0.92 Score=39.53 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
=+..++++.++...|..++..|..++..++.++..++.||+.|......|-.++..|..-+.
T Consensus 140 ~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 34557777788888888888888888888999999999999998766665554444444333
No 44
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=93.87 E-value=0.6 Score=40.49 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q 82 (172)
..-+.++..|+.+-..|+.++.+|..++..++.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666655555555544433
No 45
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=93.73 E-value=1.2 Score=31.63 Aligned_cols=62 Identities=24% Similarity=0.363 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
|...+..|..+-..|......+...|..|+.+...++.+...|+.++..+...+..|.+.+.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677777777777777777777777777777777777777777777777777777776654
No 46
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.72 E-value=0.63 Score=33.93 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
++|..++..|+..-..|..++...+..+.+|..||..|..-+..|
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777766665555
No 47
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.30 E-value=2.5 Score=35.49 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
++..+|..+++++..+...|..++..|.+++..+..|+..|++++..+.+..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444455555555555555554433
No 48
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=92.94 E-value=2 Score=31.43 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
-++.||++|.+.-....-|.-++..++++-..+..|+..++..-.+|..+-..|..--..|
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4788999999888888888888888888888888887775555555555555444444333
No 49
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.89 E-value=2.1 Score=33.30 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044691 91 NSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 91 N~~LRaq~~eL~~rL~~l~ 109 (172)
...|+.++.+|..|...+-
T Consensus 70 ~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 70 VEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 50
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.65 E-value=5.7 Score=34.38 Aligned_cols=47 Identities=26% Similarity=0.269 Sum_probs=32.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 35 RKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 35 ~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
.+.+..-.+.+++.=.-++..+++|+.+|.+++.+.+.+..++..+.
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666677777888888888888777777766666554
No 51
>PRK11637 AmiB activator; Provisional
Probab=92.64 E-value=3.3 Score=37.61 Aligned_cols=75 Identities=9% Similarity=0.077 Sum_probs=55.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 38 MISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 38 ~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
..+.....+.....-...+..|+.++..+..+...+..++..+..+...++.+=..+++++..+...|..+-..+
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556677888888888888888888888888888888888888888888888777776654444
No 52
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=92.54 E-value=0.39 Score=32.45 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
|++.+|++|+.++..=+ ..=...-......+..++.||..|++++.-++.
T Consensus 1 kw~~Rl~ELe~klkaer---E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER---EARSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH---HhccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777655432 222223345667788889999999999886653
No 53
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.46 E-value=0.87 Score=36.25 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 91 NSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 91 N~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
|..|+.++.+|...+..+..-+..+..
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555554
No 54
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.43 E-value=1.9 Score=34.32 Aligned_cols=55 Identities=18% Similarity=0.338 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHY--MNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~--~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
+.+|..++..|+.++..|..++..|.... ..+..+...|+.++..|..+|..|.+
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443222 34445555555555555555555544
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.41 E-value=3.2 Score=40.80 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRA 96 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRa 96 (172)
+.-+-+..+..+|+.|-..|+.++...++++..++.|...||.
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666666666666666666666666666655554
No 56
>PRK04406 hypothetical protein; Provisional
Probab=92.40 E-value=1.9 Score=30.88 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
.++.++..|+.........|..|......-..+-..|+.++..|..+|+.+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555555555554555555566666666666666553
No 57
>PRK09039 hypothetical protein; Validated
Probab=92.23 E-value=3.2 Score=37.19 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
|..|+.+...|+.++..+...+..++.+....+.++.+|..+|...
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555555555555555544
No 58
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.21 E-value=2.1 Score=38.43 Aligned_cols=50 Identities=14% Similarity=0.308 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
++|...+..|+.+|..|+.++...+.++..|..+|..||.....+..+..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aE 72 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAE 72 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666666666666655555444
No 59
>smart00338 BRLZ basic region leucin zipper.
Probab=92.13 E-value=0.83 Score=30.96 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 75 TSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 75 ~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
..+..|..+...|+.+|..|+.++..|...+..|..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777888888889999988888888888887765
No 60
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.74 E-value=5.7 Score=31.70 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=56.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
+|-..-...|++.+-.--.-+++.+..|+.++..+..+...|...+..++..-..|..+=...+.++.+|-....++...
T Consensus 30 EreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~ 109 (140)
T PF10473_consen 30 ERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENL 109 (140)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45555667777777777777777777777777777777777777776666655555555555566666666555555555
Q ss_pred HHHHh
Q 044691 112 ISFLD 116 (172)
Q Consensus 112 l~~~~ 116 (172)
|...+
T Consensus 110 l~~~E 114 (140)
T PF10473_consen 110 LQEKE 114 (140)
T ss_pred HHHHH
Confidence 55443
No 61
>PRK02119 hypothetical protein; Provisional
Probab=91.63 E-value=2.4 Score=30.08 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
.++.++..|+.........+..|......-..+-..|+.++..|..+|+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444344444445556666655555554
No 62
>PRK04325 hypothetical protein; Provisional
Probab=91.52 E-value=2 Score=30.56 Aligned_cols=45 Identities=18% Similarity=0.147 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
+.+||.+++-++.-...|. .....-..+-..|+.++..|..||+.
T Consensus 11 i~~LE~klAfQE~tIe~LN-------~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLN-------ATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444443 33333333445555555555555554
No 63
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=91.44 E-value=0.75 Score=35.62 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
..+.+|+.++-.|-++...|++.+..+.+....|.-||..||.++.+
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 35788999999999999999999999999999999999999999988
No 64
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=91.37 E-value=0.58 Score=40.81 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=20.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQHYM----NIESENSVLRA 96 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~----~le~EN~~LRa 96 (172)
.+.+|..||.+|+.++..+.+++. .++.||..||+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777776655533332 25566666655
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.37 E-value=1.8 Score=40.80 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMN-IESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~-le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.+..|..+-+.|.+||+.|+++...+.++... |..+...|..+...|...++.+..++..+
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777778888888887776666655543 33556666666655555555554444333
No 66
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.36 E-value=5.7 Score=33.56 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSIN 78 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~ 78 (172)
++.+..+...|..+...|..++.
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e 66 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIE 66 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343443333333333333
No 67
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.23 E-value=2.8 Score=34.21 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
.+..|+.++..|..++..+...+.....-|..|+.++..|.
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~ 157 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 68
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.21 E-value=3.4 Score=30.11 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=49.8
Q ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 53 QKHLDDLMAQ-VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 53 q~~leeLe~q-v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
...++.++.+ -..|..+-..|+..+..|..++..+..||..|+.+-.-|+.-+..|-.--.++.
T Consensus 7 ~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~s~v~~ 71 (80)
T PF10224_consen 7 SEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSSSSVFQ 71 (80)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3445555543 678888899999999999999999999999999999999888888755444433
No 69
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=91.20 E-value=1.5 Score=29.67 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
...+..|...+..|+.+|..|+.++..|...+..|...+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445667777778888888888888888888887776543
No 70
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=90.90 E-value=1.2 Score=33.64 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 71 HQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 71 ~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
..+..++..++++...+..+|..|+.++..|+.....+.+++.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR 72 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERAR 72 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 3444555555555556667788888888888775555665554
No 71
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.90 E-value=2.4 Score=29.93 Aligned_cols=47 Identities=23% Similarity=0.244 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
+++.+||.+++-.+.-...| ..-...-..+-..|+.++..|..+|+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~L-------n~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEEL-------NVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555554444433 333333334445555555555555544
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.74 E-value=4.2 Score=32.17 Aligned_cols=20 Identities=40% Similarity=0.451 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSIN 78 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~ 78 (172)
++.++..|..++..+..+|.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~ 38 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEIT 38 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=90.70 E-value=3.4 Score=36.43 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
..+..|..++..+..+....+..+..++.+...+..+-..+.++..++...+..+..++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666655555555555555555555555555555555555554444
No 74
>PRK00846 hypothetical protein; Provisional
Probab=90.63 E-value=2.9 Score=30.31 Aligned_cols=52 Identities=10% Similarity=0.059 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
+++.++..|+.........|..|.+.......+...|+.++..|..||+.+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444444444444555555555555555555443
No 75
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.63 E-value=9.6 Score=35.58 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=59.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 044691 33 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL----HSL 108 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL----~~l 108 (172)
++++-+.++=+.-.++....++....|+.++..++.+...+..++.........+...++.+...+..|..+- ..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677776677777777778888888888888888888888887777777777777777777776665554 344
Q ss_pred HHHHHHHh
Q 044691 109 NEIISFLD 116 (172)
Q Consensus 109 ~~il~~~~ 116 (172)
-.+|..+.
T Consensus 118 a~~L~A~~ 125 (420)
T COG4942 118 AEQLAALQ 125 (420)
T ss_pred HHHHHHHH
Confidence 44444444
No 76
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.58 E-value=1.9 Score=30.01 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
+++.+||.+++-++.-...|...+.. -..+-..|+.++..|..+|+.+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~-------Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTE-------QQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666776666666555555444333 33344445555555555555443
No 77
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=90.50 E-value=3.4 Score=36.56 Aligned_cols=63 Identities=16% Similarity=0.362 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+.++.+...+..|+.||..+..+.......+..+..|+..+..++..+..++..|..+...+.
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667888889999999999999999999999999999999999999999999999999888775
No 78
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.47 E-value=3.9 Score=31.73 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044691 88 ESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 88 e~EN~~LRaq~~eL~~rL~ 106 (172)
..++..|++.+..|..=++
T Consensus 95 ~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 95 SEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444333
No 79
>PRK00295 hypothetical protein; Provisional
Probab=90.39 E-value=3.5 Score=28.85 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
++.+||.+++-++.-...|...+. .-..+-..|+.++..|..+|+.+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~-------~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLV-------EQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 477777777776655555544333 33344456666666666666664
No 80
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=90.29 E-value=9.5 Score=31.68 Aligned_cols=79 Identities=6% Similarity=0.131 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
|-+-.+.++....+-+-.+.+...+...|+.++.+-..++..+...+..+.+....+..+...++.+..+....+..+.
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lk 165 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLK 165 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677788888888888888899998888776666666666666666666655555555444444333333333
No 81
>PF15294 Leu_zip: Leucine zipper
Probab=90.28 E-value=1.3 Score=39.16 Aligned_cols=45 Identities=24% Similarity=0.345 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
|..++..|+.||..|+.++..+..++..+..|+..|.+++.+|+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999988887
No 82
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.17 E-value=2.6 Score=29.33 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
|+.++..|+....-+ ...+..|...-.....++..|..+|+.|.+-+..+.
T Consensus 2 le~Ri~~LE~~la~q-------e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQ-------EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555554433333 333333333333445566667777777777766665
No 83
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=90.16 E-value=5 Score=28.26 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
|++.+..|+..+..+..++.........|..|+...-.++.........|.
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk 53 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLK 53 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333333333333333333
No 84
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=89.86 E-value=4 Score=34.39 Aligned_cols=47 Identities=26% Similarity=0.200 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
..++..|+.-+..++.+|..|-++...+...-++|..-|..++.-+|
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~ 112 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENG 112 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555666666666666666666666666666666655444
No 85
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=89.66 E-value=3.8 Score=36.53 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
=+.+-+.+.-.+..|+.+|..||.++.+|.++++.|..+|..+
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777888999999999999999999999999988544
No 86
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.60 E-value=9.2 Score=30.52 Aligned_cols=62 Identities=18% Similarity=0.363 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.++..++.+...+..+..+-..+...+.........+..+-..++.....+...+..+++++
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 188 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQELL 188 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444333333334444444444444444444444444444433
No 87
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.44 E-value=4.9 Score=35.34 Aligned_cols=61 Identities=13% Similarity=0.274 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIE-------SENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le-------~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+...+.+++..+..++.+...|..++..+..+...+. .+=..|..++.+|..++...++++
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444 444444445555555555444444
No 88
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=89.09 E-value=0.75 Score=37.74 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
|+|+|.+..+.-..|.-|..+|. .-..|..++.+||.++.+|+.+| .+.+.+
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 78999999999999999988883 35567788888888888888888 444444
No 89
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.05 E-value=16 Score=32.55 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------H-----------HHHHHHHHHHHHHHH
Q 044691 35 RKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIA-------T-----------QHYMNIESENSVLRA 96 (172)
Q Consensus 35 ~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l-------~-----------q~~~~le~EN~~LRa 96 (172)
+.+-+.-|+--.....--.++-.+|+.++.+++..|..|..++..| + ++...|+.+|+.+++
T Consensus 26 kq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~a 105 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHA 105 (333)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444444444445544444444444443333333 2 233456677777777
Q ss_pred HHHHHHHHHHHHH
Q 044691 97 QLGELTHRLHSLN 109 (172)
Q Consensus 97 q~~eL~~rL~~l~ 109 (172)
....|+..++.|+
T Consensus 106 ikeql~kyiReLE 118 (333)
T KOG1853|consen 106 IKEQLRKYIRELE 118 (333)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666655443
No 90
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=88.84 E-value=7.6 Score=28.50 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=52.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 33 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
++..+.+.+=|++=..|.-+.....+++.++..|......|-.++.....++..|+.-|..+...+...
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777766666666666999999999999999998888887777777777776665555444
No 91
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.66 E-value=5.2 Score=35.15 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
+..++.|..+|..+..+-..+..++..+......+..+-..|+..+.+..
T Consensus 51 q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 51 QNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666666666555543
No 92
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=88.47 E-value=14 Score=31.14 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=56.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
|=|+-++..-.+-..|.-..-+.++..|...+..-+.+-.....+-..+..+...|..|....++++..|..++..|+.-
T Consensus 104 eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 104 EIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666777777777777777777666666666677777777777777777777777777776655
Q ss_pred H
Q 044691 112 I 112 (172)
Q Consensus 112 l 112 (172)
.
T Consensus 184 ~ 184 (192)
T PF11180_consen 184 A 184 (192)
T ss_pred h
Confidence 4
No 93
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.93 E-value=6.6 Score=37.78 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 45 ARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 45 ARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
|.+.|..=...+.++...+..++++...++..+..+......|..||..|+.++..++..
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333344444555566666777777888888888888888888888888888888777653
No 94
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=87.62 E-value=1.1 Score=31.14 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 68 KDNHQIITSINIATQHYMNIESENSVLRAQ 97 (172)
Q Consensus 68 ~EN~~L~~~l~~l~q~~~~le~EN~~LRaq 97 (172)
.|...|+.+|..|..+...|+.||..||..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666666667777777754
No 95
>PRK00736 hypothetical protein; Provisional
Probab=87.48 E-value=5.3 Score=27.90 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
.++.+||.+++-++.-...|...+.. -..+-..|+.++..|..||..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~-------Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAE-------QWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 34777888777776655555443322 223334455555555555544
No 96
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=87.32 E-value=18 Score=35.84 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=24.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
+..|+.+...+...+..+...+..+..+...++.++..+...+..+...+.
T Consensus 436 ~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~ 486 (1164)
T TIGR02169 436 INELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELS 486 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444455555555555555555555554443
No 97
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=87.23 E-value=3.5 Score=35.09 Aligned_cols=9 Identities=56% Similarity=0.737 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 044691 88 ESENSVLRA 96 (172)
Q Consensus 88 e~EN~~LRa 96 (172)
..||..||.
T Consensus 99 ~~en~~L~~ 107 (276)
T PRK13922 99 EAENARLRE 107 (276)
T ss_pred HHHHHHHHH
Confidence 344444433
No 98
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.19 E-value=6.9 Score=27.12 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
+..++...+..|-.+..++.....+...|..+-..|+.++.+++.
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445556666666666666655555555555555555555543
No 99
>PRK02119 hypothetical protein; Provisional
Probab=87.15 E-value=5.4 Score=28.27 Aligned_cols=21 Identities=5% Similarity=0.150 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044691 95 RAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 95 Raq~~eL~~rL~~l~~il~~~ 115 (172)
..++..|+.+|+.|.+-+..+
T Consensus 36 q~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 36 QFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 334444555555544444333
No 100
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.11 E-value=8.1 Score=37.17 Aligned_cols=65 Identities=29% Similarity=0.394 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHH-----------------------------HHHHHHHH
Q 044691 47 RSRMRKQKHLDDLM-------AQVAQLRKDNHQIITSINIATQ-----------------------------HYMNIESE 90 (172)
Q Consensus 47 RSR~RKq~~leeLe-------~qv~~L~~EN~~L~~~l~~l~q-----------------------------~~~~le~E 90 (172)
.+|.|-|++|.+|- .+|..|++||..|...++.++. ....++.+
T Consensus 35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665 4567788899999888888742 23445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044691 91 NSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 91 N~~LRaq~~eL~~rL~~l~~i 111 (172)
-..|+.++.+|+.++......
T Consensus 115 i~kl~~e~~elr~~~~~~~k~ 135 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKE 135 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHH
Confidence 555666666666555544333
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=86.90 E-value=7.6 Score=33.97 Aligned_cols=46 Identities=13% Similarity=0.351 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
.+++..++..+.+||..|..++..+...|..+..+-..|+.+...|
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333333333333333
No 102
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.75 E-value=22 Score=31.41 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 86 NIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 86 ~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.+..+-..|...+.++..+...+..-|
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.60 E-value=11 Score=35.24 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=46.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 40 SNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 40 sNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.++...++-=.++.+.+.+-..+.+.|+++...+..++..++.++.....++..+++++..+..+|..|...-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344555555555566666666666666666666666666666666666777777777777766666665433
No 104
>PRK09039 hypothetical protein; Validated
Probab=86.56 E-value=16 Score=32.77 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
|..+|..|+.++..++.+-..+.++..+.+.++..|..-|
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L 181 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL 181 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444433
No 105
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.46 E-value=13 Score=28.62 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 38 MISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 38 ~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
+..-.|...-|+..=.+.-++|+..+..|+.++.....++..|
T Consensus 21 Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eL 63 (107)
T PF09304_consen 21 LERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAEL 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333333334444444444444333333333
No 106
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.20 E-value=12 Score=29.66 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
+-..+..|..++..|+.+...+...+..+.
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k 62 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAK 62 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 107
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.18 E-value=4.4 Score=34.87 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
+-+-+|..++..|+.|...|+-+++.+..++..+......|-.++..+
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888777777777766666666666554
No 108
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=86.16 E-value=0.034 Score=50.53 Aligned_cols=71 Identities=21% Similarity=0.195 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 28 ALMDQRKRKRMISNRESARR---SRMRKQKHLDDLMAQVAQLR-KDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 28 ~~~deRr~rR~lsNRESARR---SR~RKq~~leeLe~qv~~L~-~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
...+.|+..|+++|+.+|.+ +|.||+.+...|..+|..|+ .++.. |..++..|..
T Consensus 149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~---------------------l~~~is~Lqn 207 (395)
T KOG1414|consen 149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSP---------------------LSPQISPLQN 207 (395)
T ss_pred CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcc---------------------cCcccccccc
Confidence 35678999999999999999 99999999999999999887 44433 6666677777
Q ss_pred HHHHHHHHHHHHhhcC
Q 044691 104 RLHSLNEIISFLDASN 119 (172)
Q Consensus 104 rL~~l~~il~~~~~~~ 119 (172)
..+.++.++..+....
T Consensus 208 e~~~l~~~l~~h~~~~ 223 (395)
T KOG1414|consen 208 EADHLEKELNTHRPPC 223 (395)
T ss_pred HHHHHHHHHhccCCCc
Confidence 7777777777665443
No 109
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.12 E-value=22 Score=31.45 Aligned_cols=67 Identities=13% Similarity=0.151 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE-------LTHRLHSLNEIISFLDAS 118 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e-------L~~rL~~l~~il~~~~~~ 118 (172)
..+.+.+|+.+..+|..|-..|..+...+.+.-...-.+.+.+.-++.+ |..++......++.+..+
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555555555544444444444444444444 444444444445555443
No 110
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.08 E-value=16 Score=32.68 Aligned_cols=71 Identities=10% Similarity=0.215 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIA--------------TQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l--------------~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.|-++.+++-..++..|+.||..|......+ +.+...++......+.++..|...|.-+..-++..
T Consensus 49 qKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 49 QKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566777777777776666655 34556667778888888888888888888888877
Q ss_pred hhcCC
Q 044691 116 DASNN 120 (172)
Q Consensus 116 ~~~~g 120 (172)
....+
T Consensus 129 Q~~~~ 133 (307)
T PF10481_consen 129 QQAAS 133 (307)
T ss_pred HHhhc
Confidence 65544
No 111
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.97 E-value=9.7 Score=33.90 Aligned_cols=25 Identities=4% Similarity=0.099 Sum_probs=8.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQHYMN 86 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~~ 86 (172)
++..+..++......+..++.+...
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~ 236 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQE 236 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 112
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.74 E-value=25 Score=31.10 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
+..++.+..++.+.+++...+..++.....++..++.+-..|...+.-+..+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sK 257 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSK 257 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555444444444444433333
No 113
>PRK00295 hypothetical protein; Provisional
Probab=85.50 E-value=9.8 Score=26.54 Aligned_cols=51 Identities=10% Similarity=0.070 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
++.++..|+.... ....-...|...-.....++..|+.+|+.|.+-+..+.
T Consensus 3 ~e~Ri~~LE~kla-------~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQA-------FQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455555554333 33333333333333445556778888888877776665
No 114
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.39 E-value=25 Score=32.35 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
...|+.++..|+.++..+..++..+..++..+..+-..+
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443333
No 115
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.18 E-value=20 Score=29.53 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQ-LGELTHRLHSLNEI 111 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq-~~eL~~rL~~l~~i 111 (172)
..+|+.++..|+.++..|..++..++.++..++..+..+++. ......++..|...
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~ 178 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQ 178 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999999998888888777765443 33344444444443
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.08 E-value=13 Score=33.27 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 69 DNHQIITSINIATQHYMNIESENSVLRAQLG 99 (172)
Q Consensus 69 EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~ 99 (172)
|...|..++-.+.+++..+..||..|...+.
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444555555555666666666665554443
No 117
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=85.06 E-value=8.9 Score=31.61 Aligned_cols=16 Identities=19% Similarity=0.273 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 044691 84 YMNIESENSVLRAQLG 99 (172)
Q Consensus 84 ~~~le~EN~~LRaq~~ 99 (172)
+..|..++..|++++.
T Consensus 112 l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 112 LEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 118
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=85.03 E-value=8.8 Score=33.86 Aligned_cols=68 Identities=28% Similarity=0.366 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRES-ARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 32 eRr~rR~lsNRES-ARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
.|-.=.-++|||. -+.+|.||+.-. .++..|+...- -..++..|++++..+++||.+..+++..+.++
T Consensus 126 yR~~LK~IR~~E~sl~p~R~~r~~l~----d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 126 YRIHLKSIRNREESLQPSRDRRRKLQ----DEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHHH----HHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 3433456889984 456666666443 44445543322 24567889999999999999999888776543
No 119
>smart00340 HALZ homeobox associated leucin zipper.
Probab=84.89 E-value=2.7 Score=27.46 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 77 INIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 77 l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
...|++-+..|..||..|..++.+|+.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778889999999999999998864
No 120
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.88 E-value=3.8 Score=30.87 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 77 INIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 77 l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
+..+++++..++.+|..|+++...|..++..|++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4445555555555555555555555555555543
No 121
>PRK02793 phi X174 lysis protein; Provisional
Probab=84.74 E-value=8.6 Score=27.13 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
++.++..|+ .++.....-...|-..-.....++..|..+|+.|.+-+..+..
T Consensus 6 ~e~Ri~~LE-------~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELE-------SRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555554 3344444444444444444455667788888888777766654
No 122
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=84.74 E-value=14 Score=33.53 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
+..|..++.+|..+|..|...+..+..++..+..+...+
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~ 177 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEH 177 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666666665555554444
No 123
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=84.69 E-value=4.5 Score=27.52 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 72 QIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 72 ~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.+..++..++.+...+..+|..|+.++..|+.--..+..++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~A 61 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVA 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34444445555555556666666666666644334444444
No 124
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=84.61 E-value=6.6 Score=33.89 Aligned_cols=22 Identities=5% Similarity=0.104 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIIT 75 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~ 75 (172)
++..+||.++..+..+...|+.
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~ 114 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRR 114 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665554444443
No 125
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=84.56 E-value=6.5 Score=27.42 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 69 DNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 69 EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
....+..++..+.++...+..||..|+.++..|.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455666666777777778888888888887765
No 126
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.52 E-value=11 Score=27.19 Aligned_cols=51 Identities=24% Similarity=0.173 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
|++++..|+-....-...|..|..........-..+++++.-|..|++.++
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444333333333333333333333344445555555555554443
No 127
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.48 E-value=21 Score=30.59 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
|+++.+.+..+-..|..+++.....+.....++..|+.|..++.+....|-+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLle 200 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLE 200 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 5566666666666677777777777777777777777777777666655543
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.10 E-value=13 Score=36.06 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.+.++.+++|..++..|..+-..+...+..+...+..+..+....+.+..+|...+.....++..+.
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~ 390 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLP 390 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456777888888888888888888888888888888888888888887777777776666666654
No 129
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.95 E-value=4.8 Score=34.44 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=16.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 66 LRKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 66 L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
++.++..|..+.+.+...|..|..||+.|+.++
T Consensus 177 ~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 177 AQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 333444444444444555555555555555544
No 130
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.84 E-value=17 Score=36.82 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=41.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 38 MISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLG 99 (172)
Q Consensus 38 ~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~ 99 (172)
...+-..-.--+.+-.-.++.|...+..|+-||.+|..++......+.++..++..|+.|+.
T Consensus 655 l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 655 LDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344444455556667777777777777777777777777777777777777777776
No 131
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=83.79 E-value=8.8 Score=29.59 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=16.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQ 97 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq 97 (172)
.||=.|+.-...|.+++...++...+|..||.+|-+-
T Consensus 63 tQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQY 99 (120)
T KOG3650|consen 63 TQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQY 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 3344444333344444444444444444555554433
No 132
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=83.74 E-value=15 Score=26.89 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIES---ENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~---EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+-+|..+...+..+-..|+.+-+.+..++..+.. +-..|.+++.++..++..+...+..+
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444454444444444444433 23445555555555555555544443
No 133
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=83.59 E-value=3 Score=32.46 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=22.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 67 RKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 67 ~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
+.|...|+.+|..|.++...|+.||..||.-+
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~ 97 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLA 97 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34555566667777777777888888887643
No 134
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=83.54 E-value=32 Score=33.48 Aligned_cols=44 Identities=16% Similarity=0.381 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHH------------------------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLR------------------------KDNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~------------------------~EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
.+..+|.+|+..+..+. ..|..|+.++..+...+..|..+|..|
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~el 186 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMEL 186 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 56667777776665553 367888888888888888888888544
No 135
>PRK04406 hypothetical protein; Provisional
Probab=83.16 E-value=12 Score=26.76 Aligned_cols=51 Identities=8% Similarity=0.137 Sum_probs=24.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 66 LRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 66 L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
++.....|..++.....-...|...-.....++..|+.+|+.|.+-+..+.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444444444333333334445666666666655554443
No 136
>PRK04325 hypothetical protein; Provisional
Probab=83.11 E-value=13 Score=26.35 Aligned_cols=55 Identities=9% Similarity=0.166 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+..++.++..|+ .++.....-...|-..-.....++..|..+|+.|.+-+..+..
T Consensus 4 ~~~~e~Ri~~LE-------~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~~ 58 (74)
T PRK04325 4 VQEMEDRITELE-------IQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDANP 58 (74)
T ss_pred chhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345666666555 3343333333444333333445567788888888777766653
No 137
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=82.73 E-value=1.6 Score=28.41 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=10.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
+..+|-+.|..+..++..++.....|..||..||.++
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3445556666677777777777777777777777765
No 138
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.63 E-value=17 Score=26.74 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=56.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 36 KRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 36 rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.++...++.....=..|...+..|+.++..|..|-..-..++-.+.+....+..||..|+.++..=..-+..|.
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~ 79 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK 79 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45666667777777788889999999999999988888888888888888888888888887765444333333
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.63 E-value=27 Score=29.11 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 044691 95 RAQLGELTHRLHSLNE 110 (172)
Q Consensus 95 Raq~~eL~~rL~~l~~ 110 (172)
...+..+..++..+..
T Consensus 125 ~~~~~~~~~~l~~l~~ 140 (302)
T PF10186_consen 125 QNELEERKQRLSQLQS 140 (302)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444443333
No 140
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=82.60 E-value=11 Score=33.50 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.+...+.++...+.+-..+..++..++.+|.....+...|..++.....+|.....++..+
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
Confidence 4455555555666666666666666777777777777777777777777777666666544
No 141
>PRK00736 hypothetical protein; Provisional
Probab=82.49 E-value=14 Score=25.78 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
++.++..|+.........| ..|-..-..--.++..|..+|+.|.+-+..+..
T Consensus 3 ~e~Ri~~LE~klafqe~ti-------e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~ 54 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTI-------EELSDQLAEQWKTVEQMRKKLDALTERFLSLEE 54 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555554433333322 223222333344557788888888777766553
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=82.37 E-value=33 Score=30.37 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 43 ESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 43 ESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
+....-+..=.+.+.+|+.+...|..+-...-...+.+..++..+..|...|..++.....+|..|..
T Consensus 67 ~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 67 EELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444556666666666666666666667777777777777777777777777777765543
No 143
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.36 E-value=49 Score=32.01 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=12.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 65 QLRKDNHQIITSINIATQHYMNIESENSVLRA 96 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRa 96 (172)
.|..|+..|..+...+..+...|+.+...|..
T Consensus 203 ~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~q 234 (546)
T PF07888_consen 203 ELKEERESLKEQLAEARQRIRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433333
No 144
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=82.22 E-value=0.22 Score=45.28 Aligned_cols=44 Identities=30% Similarity=0.483 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQII 74 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~ 74 (172)
++|+++=.++||.+|-++|.||+.....|+.+...+..+|..|.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 45665568999999999999999999999999999888777775
No 145
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.20 E-value=18 Score=32.42 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
|-++.+..|-.+|..|+..-..+..+...+.+++.....-...|.+++.+|++|....-.++.
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666665555555555555555555555555566666666666655555443
No 146
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=82.06 E-value=15 Score=25.88 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.|...+.+|...|..|...+....++...+......-.+....|+-+++....+++...
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e~~~ 60 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKEAYE 60 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999988888888888888777777777777777776666665443
No 147
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=81.92 E-value=2.7 Score=32.85 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
|..-+++|.+++.+|+-||..|+.++..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456789999999999999999999886543
No 148
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=81.90 E-value=19 Score=30.51 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 42 RESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 42 RESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
-|.+.+.|....+..++|+.+...|+.+-..|+.++...
T Consensus 104 ~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 104 IENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433
No 149
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=81.81 E-value=32 Score=29.38 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=46.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------HHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 34 KRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKD--------NHQI-IT---SINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 34 r~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~E--------N~~L-~~---~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
|.||+...-.+-|..|.-=+.=.++|..-|-+.+.. |..+ .. -+..|.++...-+.|-+.|++++..|
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL 138 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTAL 138 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555567777666544322 2221 11 13445555566677777777777776
Q ss_pred HHHHHHHHHHHHHHhhcC
Q 044691 102 THRLHSLNEIISFLDASN 119 (172)
Q Consensus 102 ~~rL~~l~~il~~~~~~~ 119 (172)
+==-...+.++..+....
T Consensus 139 ~iIk~~YEqM~~~~qdnp 156 (229)
T KOG1319|consen 139 KIIKVNYEQMVKAHQDNP 156 (229)
T ss_pred HHHHHHHHHHHHhcccCC
Confidence 544444445554444433
No 150
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.79 E-value=33 Score=32.34 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSIN 78 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~ 78 (172)
=++++..+|.++.+|+.||.+|..+.-
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788889999999999988876543
No 151
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=81.79 E-value=16 Score=25.86 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+.+=..+|++|..|-..|....-.+......|.+.+..+..++..|..++..+..-+..+..
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556788899999999988888888888888899999999999998888888777766653
No 152
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=81.73 E-value=25 Score=28.11 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.+-.|.++-..|+..-=...+++..+.++ +.|+.+|..|..++..|...+..+..-++.+.
T Consensus 48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444544333455666555444 67899999998888888877777666665554
No 153
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=81.72 E-value=7.7 Score=35.58 Aligned_cols=33 Identities=27% Similarity=0.307 Sum_probs=24.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLR 95 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LR 95 (172)
.|...|+.||..|+++++.|+.+...| ||..||
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 455677788888888888887777777 666665
No 154
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=81.70 E-value=49 Score=31.45 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
-..+.|+.++.+|..+|..|+..+..|.-.+.++..+-..+-.++..|+.+|.
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~ 349 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLI 349 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 34566777888899999999999998888888888777666666666655554
No 155
>PHA03162 hypothetical protein; Provisional
Probab=81.68 E-value=1.3 Score=35.36 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSIN 78 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~ 78 (172)
-+++.-+++|.+++.+|+-||..|+.++.
T Consensus 9 pk~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 9 PKAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999999999999983
No 156
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.60 E-value=13 Score=37.21 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.||...+..|..++..+..+...++..|..++..+...+.++..|.+.+..|+.+|..-+..+...
T Consensus 297 ~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk 362 (775)
T PF10174_consen 297 SRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKK 362 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 456667778888888888888888888888888888888888888888888888877666666443
No 157
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=81.53 E-value=14 Score=28.91 Aligned_cols=58 Identities=14% Similarity=0.236 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 49 RMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 49 R~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
+.=-...+.+|+.++..|..|--.=..++..+-.+.+.|..++..|..-+.-|..||+
T Consensus 9 kE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLR 66 (120)
T PF10482_consen 9 KEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLR 66 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445566666666666554444444444444444444444444444444444443
No 158
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=81.36 E-value=33 Score=30.85 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 42 RESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 42 RESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
-|+++|-..-.+.++.+++.-...-+........+-..+.+++..+..||..||.|+.....+...-..++
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~V 251 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTV 251 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666777766655555555555666678889999999999999999999998887766444
No 159
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=81.34 E-value=10 Score=32.08 Aligned_cols=45 Identities=22% Similarity=0.396 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 68 KDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 68 ~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.||..|...|..+...+..|..||..|+. |...++.|-++|+.+.
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~e----lae~~~~la~~ie~l~ 169 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKE----LAEHVQYLAEVIERLT 169 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 47888888888777777777777777665 6667777888887764
No 160
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=81.13 E-value=11 Score=39.01 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQ---HYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q---~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.+.++++.|+..+..|+.||.-|..+|..|.. ....|+..|..|...-.++..-+..|+
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~ 588 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALN 588 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999998865 556778888888777777666666555
No 161
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=80.92 E-value=20 Score=34.42 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIA-------TQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l-------~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
++.++.||.++..|+.+-.+|..++..- ......+..|-..++.++.++-.++..|.+.++.++
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788888888888888888777532 114666777888888899999999998888887665
No 162
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=80.53 E-value=6.6 Score=25.75 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
...+..+...+..|..+|..|+.++..|..
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666777777788888777777754
No 163
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=80.27 E-value=33 Score=28.52 Aligned_cols=57 Identities=12% Similarity=0.210 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNI 87 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~l 87 (172)
+-...++.+.+-++-+.+=..-+.++..++.++..|+.++..|..++..+.+....|
T Consensus 70 e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 70 EVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777776666666666777777777777777777766666665444433
No 164
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.14 E-value=23 Score=29.16 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 70 NHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 70 N~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+..|..-+..|.+++......|..|...+..|+..+..+.+-+
T Consensus 76 ~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 76 SEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666555444
No 165
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=80.09 E-value=16 Score=24.93 Aligned_cols=33 Identities=9% Similarity=0.253 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 84 YMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 84 ~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
...+..||..|+..+.++.+-++.|-.+-+.+.
T Consensus 16 i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888899999888888876666665553
No 166
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.97 E-value=44 Score=34.75 Aligned_cols=58 Identities=19% Similarity=0.274 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 44 SARRSRMRKQKHLDDLMAQV-AQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 44 SARRSR~RKq~~leeLe~qv-~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
..+....+..+.+.+++++. ..+..+-.++..++..|.++...++..+..|+++..++
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444 33333444444444444444444444444444444333
No 167
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.81 E-value=28 Score=30.04 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 65 QLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
+.+..|.+|..++..+.+....|..|...|++.-..|-.|++.|.+
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444444444444444444444444444445555555443
No 168
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=79.77 E-value=12 Score=34.81 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 41 NRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 41 NRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
--++|..-|+|-.+--...+..+..+..|...|+.+++..+.+..-|..||..|+.-+..|.+-++.+..
T Consensus 225 ~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 225 GEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred ChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 3467777788888888888889999999999999999999999999999999999999999888876643
No 169
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=79.77 E-value=13 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.447 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
++.+.+|+.+++.++.+|..|..++..+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555444
No 170
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=79.58 E-value=21 Score=35.06 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQH----------YMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~----------~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.+..+|+.++.+|++++..|..++..+... +..++.++..|+.++.+-..++..|..-+..+
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555332 33445566666666555444444454444444
No 171
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.39 E-value=50 Score=35.47 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=11.4
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 044691 33 RKRKRMISNRESARRSRMRK 52 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RK 52 (172)
++.+.+...++.|++.+.-+
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655543
No 172
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.32 E-value=17 Score=30.23 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSV---LRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~---LRaq~~eL~~rL~~l~~il 112 (172)
.+.++..+...|..-...+..++..|...+...+.+-.. +++++..+..+|..|..--
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~ 109 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEH 109 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333344444444433333333332 2334444444444444333
No 173
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.28 E-value=16 Score=32.54 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=31.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCC
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD---ASNNNDD 123 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~---~~~g~~~ 123 (172)
-+|..|+.....+...+..+.+.+...-.+-..++.....|+..+..|.+.|..-. .-+|++-
T Consensus 112 yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVl 177 (302)
T PF09738_consen 112 YQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVL 177 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeee
Confidence 33334444444444444444444444444444555556666677777776664332 3467653
No 174
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=79.27 E-value=12 Score=28.84 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=35.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 60 MAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+.+..+|-.+.-+|...+..|.++...+..||-.||.+-.-|.+-+..|-+.-.+++
T Consensus 55 ~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVFQ 111 (120)
T KOG3650|consen 55 EEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVFQ 111 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhhh
Confidence 344555666666677777777777777777777777666666655555544443333
No 175
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=79.13 E-value=32 Score=27.83 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
.+|..+|..|+.+|..|...+..+..+...++.....|+.+...+..+-.
T Consensus 92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~ 141 (158)
T PF09744_consen 92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERER 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence 35666777777777777766666666666666666666666666655533
No 176
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=79.11 E-value=11 Score=28.49 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=23.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 64 AQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 64 ~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
+.|+.+-+....+...+.+.+..++.+|..|+.++..++.+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555666666677777776666655443
No 177
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.01 E-value=27 Score=36.25 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDN-HQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN-~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
++..++.|+.+|..++.+- ..+..++......+..|..|+..|..++..|+.+++.+.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666665544 555556666666666666666666666666666655443
No 178
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=78.61 E-value=29 Score=32.43 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=52.8
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhHHHHHHHHHHHHHHHHHHH
Q 044691 28 ALMDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQL-------------------RKDNHQIITSINIATQHYMNIE 88 (172)
Q Consensus 28 ~~~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L-------------------~~EN~~L~~~l~~l~q~~~~le 88 (172)
+..++|.+||+...-+-=||-|..=...+.+|-.-|-.. -.+-++-.+++.++..+-..|+
T Consensus 224 ~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le 303 (411)
T KOG1318|consen 224 ATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRARELENRQKKLE 303 (411)
T ss_pred cchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 455678888888888999999998888888876654333 1122222333445555666667
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 89 SENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 89 ~EN~~LRaq~~eL~~rL~~l 108 (172)
..|.+|..++.+|...+...
T Consensus 304 ~~n~~L~~rieeLk~~~~~~ 323 (411)
T KOG1318|consen 304 STNQELALRIEELKSEAGRH 323 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 77777777777776655533
No 179
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=78.53 E-value=36 Score=28.52 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=21.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 64 AQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 64 ~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
..+..||..|...+..+.+.+..|+..+..|..+-..|...
T Consensus 159 ~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~e 199 (206)
T PF14988_consen 159 RSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQE 199 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555544443
No 180
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=78.37 E-value=29 Score=30.89 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 76 SINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 76 ~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.+..++..+..+..++...+.++.+++.+|..++..|
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I 241 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKI 241 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333
No 181
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.34 E-value=31 Score=32.21 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
++.++..+-..-+..|++|..+|.++|..-.++..+.+.+...|..++.+-+.|-..+..+
T Consensus 129 ~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~m 189 (561)
T KOG1103|consen 129 AHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLM 189 (561)
T ss_pred HHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444446789999999999999999999999999999999998877766654443
No 182
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=78.08 E-value=1.3 Score=33.24 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
.+|+.|...+..|..+|..|..++..|..+...+...+..|+..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 578888888888888888888777776666665555555554443
No 183
>PHA03155 hypothetical protein; Provisional
Probab=78.07 E-value=20 Score=27.92 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINI 79 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~ 79 (172)
.-+++|++++.+|+-||..|+.++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999999999999999998855
No 184
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.91 E-value=40 Score=28.89 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNI-------ESENSVLRAQLGELTHRLHSLNEIISFLDAS-NNN 121 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~l-------e~EN~~LRaq~~eL~~rL~~l~~il~~~~~~-~g~ 121 (172)
.....+|.++..+...|..|-.....+|....+.+..| +.|....+..+..+...+.-|.+-|+.+-.. .|+
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33557888888888888877777666665555555444 5666666666777777777777777766555 665
No 185
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.86 E-value=14 Score=30.84 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 76 SINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 76 ~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
++..|.+++..+...|-.+...+..|...+..+..-..
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666665555443
No 186
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=77.86 E-value=24 Score=25.71 Aligned_cols=58 Identities=21% Similarity=0.373 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQ---HYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q---~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.|..++..|+.+-..+..++..+.. ....+..+-..|+.++.+|...+..+..-+..+
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544 355666677777777777777777666666443
No 187
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.82 E-value=21 Score=33.82 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQH-YMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~-~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+.|.++-++|++....+..+|...-+. ...+..|-..|+.+...|...|..|..-+.-+
T Consensus 83 ~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 83 EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446667777777666666666555433 34666777788888888888888887766544
No 188
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=77.39 E-value=39 Score=28.70 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 86 NIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 86 ~le~EN~~LRaq~~eL~~rL 105 (172)
.+..||..|++++.+|+.++
T Consensus 73 ~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 73 DLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444333333
No 189
>PF15058 Speriolin_N: Speriolin N terminus
Probab=77.19 E-value=7 Score=33.07 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQ 97 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq 97 (172)
.+.|..++++|-.||.+|++.+.. -.||..||.-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrL--------irEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRL--------IRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHH--------HHHHHHHHHH
Confidence 356777888888888888777654 4566666654
No 190
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=77.08 E-value=11 Score=34.28 Aligned_cols=46 Identities=13% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 65 QLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
.|+..|.+|..+|.+-.+....|+.-|..=-+++..|.+-+..|++
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEE 49 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEE 49 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333333344444444433333
No 191
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=76.95 E-value=29 Score=26.01 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.++..+|.++..|-. ...+..|.-....+..+=..|.+++..+.+.+.-|-
T Consensus 49 ~Rl~~lE~~l~~LPt-----~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLl 99 (106)
T PF10805_consen 49 RRLQALETKLEHLPT-----RDDVHDLQLELAELRGELKELSARLQGVSHQLDLLL 99 (106)
T ss_pred HHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444555544410 344444444444555555556666666655555443
No 192
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=76.87 E-value=14 Score=35.97 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 80 ATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 80 l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
|+-++.+|..||..||++-+.|+++|..|.
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 333444455555555555555555554443
No 193
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=76.77 E-value=44 Score=34.88 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=52.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNNN 121 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g~ 121 (172)
+.++-..|..|..++...+++...+..+|...+.++..+++.+..+++.++.+..+..+
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~L 318 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNAL 318 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 44555679999999999999999999999999999999999999999999998866554
No 194
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.67 E-value=26 Score=25.39 Aligned_cols=50 Identities=16% Similarity=0.103 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
-++.|+++|.+.-.-..-|.-++..|+++...|..|-..++.....|..+
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~e 54 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERE 54 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 35677777776555445555555555444444444444443333333333
No 195
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.53 E-value=49 Score=28.66 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIE 88 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le 88 (172)
.+..|..++..++..-..|..++..+......++
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333333333
No 196
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=76.52 E-value=22 Score=30.00 Aligned_cols=63 Identities=21% Similarity=0.403 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIA--TQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l--~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
..+-|++.+++.|+.+-..|..-+... .+....++.+-...+.++..+..+++.|.+.+++-.
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~st 196 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYST 196 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceEE
Confidence 344467777777777766666555433 455667778888888889999988888888886654
No 197
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=76.42 E-value=84 Score=34.84 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
++.....++.|...+..++..|+.....++..|+.|
T Consensus 948 ~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL 983 (1930)
T KOG0161|consen 948 LELTLQKLELEKNAAENKLKNLEEEINSLDENISKL 983 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 198
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.40 E-value=12 Score=27.37 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 69 DNHQIITSINIATQHYMNIESENSVLRAQLG 99 (172)
Q Consensus 69 EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~ 99 (172)
....|..++..+..+-..+..+|..|+.++.
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555677777777777777888888877765
No 199
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=76.35 E-value=40 Score=27.39 Aligned_cols=82 Identities=22% Similarity=0.306 Sum_probs=56.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------------------------HHH
Q 044691 37 RMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHY-----------------------------MNI 87 (172)
Q Consensus 37 R~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~-----------------------------~~l 87 (172)
-+..=.|+||.--.+-++.|+++..+|...-.+...|.......+.++ .-+
T Consensus 17 qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~ 96 (159)
T PF05384_consen 17 QIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAML 96 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 344556888888888999999888887777666666554444333222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044691 88 ESENSVLRAQLGELTHRLHSLNEIISFLDAS 118 (172)
Q Consensus 88 e~EN~~LRaq~~eL~~rL~~l~~il~~~~~~ 118 (172)
..+=..||.+-.+|..+|..|..+++..+..
T Consensus 97 re~E~qLr~rRD~LErrl~~l~~tierAE~l 127 (159)
T PF05384_consen 97 REREKQLRERRDELERRLRNLEETIERAENL 127 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788888888899999988877653
No 200
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=76.32 E-value=48 Score=28.30 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=23.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
+..++.|+..++..+..+...+..+...|..|..++.+|..++
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~ 253 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRL 253 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHH
Confidence 3344555555555555555555555556666655555554433
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=76.30 E-value=15 Score=31.68 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESE 90 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~E 90 (172)
+..+++|..+|.+|+.+++++..++..+.++-..+-.+
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555444444333
No 202
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=76.13 E-value=29 Score=31.78 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.+..+...-..|..++.+|..++..|.+.++..
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444555555666666666666555555544
No 203
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=75.91 E-value=31 Score=25.84 Aligned_cols=60 Identities=13% Similarity=0.227 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.+.+++.+--++...|.++..++..+......-.. +..++.++..+...++.-......+
T Consensus 18 ~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~~~~v~ 77 (106)
T PF05837_consen 18 KLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQRWRVM 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555444333222 4445555555555555444443333
No 204
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=75.91 E-value=45 Score=27.78 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.-|++-++.|+.+|.+.+.-..+....+............--..-+.++..|..-|+....-+..+.
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~ 129 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAE 129 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999998888888888777776666666666666666666666666666555443
No 205
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=75.91 E-value=45 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
..+..|..++..|+..|..|...+..+.
T Consensus 223 ~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 223 RQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 3344444444445555555555544443
No 206
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=75.86 E-value=9.2 Score=34.45 Aligned_cols=7 Identities=14% Similarity=0.321 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 044691 70 NHQIITS 76 (172)
Q Consensus 70 N~~L~~~ 76 (172)
|..|..+
T Consensus 81 Nk~L~~E 87 (319)
T PF09789_consen 81 NKKLKEE 87 (319)
T ss_pred HHHHHHH
Confidence 3333333
No 207
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=75.73 E-value=9.9 Score=37.34 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
.+|.++|.+|..|+.-|+-++...++.-.+|+..+..|..++..+.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k 370 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAK 370 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888888777776666666666666655555444
No 208
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=75.56 E-value=46 Score=27.71 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=2.1
Q ss_pred HHHHHH
Q 044691 61 AQVAQL 66 (172)
Q Consensus 61 ~qv~~L 66 (172)
.++..+
T Consensus 91 ~~l~~~ 96 (302)
T PF10186_consen 91 ERLEEL 96 (302)
T ss_pred HHHHHH
Confidence 333333
No 209
>PRK00846 hypothetical protein; Provisional
Probab=75.35 E-value=28 Score=25.18 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=30.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 64 AQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 64 ~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
..++.....|..++.....-...|...-.....++..|+.+|+.|.+-+..++.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444445555555444444444444444556666777777777776666653
No 210
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=75.24 E-value=56 Score=28.51 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044691 93 VLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.+++++.++..++..+...++..
T Consensus 250 ~~~~~l~~~~~~l~~~~~~l~~~ 272 (423)
T TIGR01843 250 EAQARLAELRERLNKARDRLQRL 272 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444455555555555444443
No 211
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=75.10 E-value=3.6 Score=31.08 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 56 LDDLMAQVAQLRKDN-HQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 56 leeLe~qv~~L~~EN-~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
.+.++.++..|...- .+-...+...+.....++..|..|+.++.+....|..++..+..++.
T Consensus 17 ~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 17 KEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444322 22333445556667778888889988888888777777777766654
No 212
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.03 E-value=42 Score=30.86 Aligned_cols=23 Identities=13% Similarity=0.427 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQII 74 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~ 74 (172)
.++.++.+.++.+.|+.--+.|.
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~ 245 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELN 245 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 34444444444444444333333
No 213
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=74.76 E-value=71 Score=29.51 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=44.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 044691 33 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSIN--------------IATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~--------------~l~q~~~~le~EN~~LRaq~ 98 (172)
-|.|.+.-|-|--|.-|+- +++-..+.++|+..|+.|..++. .|+.-...++.||..|..++
T Consensus 75 ~kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555666676776665543 33334445566666666655544 34455567788999999999
Q ss_pred HHHHHHHH
Q 044691 99 GELTHRLH 106 (172)
Q Consensus 99 ~eL~~rL~ 106 (172)
.++.+...
T Consensus 151 ~~l~~e~~ 158 (401)
T PF06785_consen 151 DALQQECG 158 (401)
T ss_pred HHHHHHHh
Confidence 88887763
No 214
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=74.47 E-value=9.3 Score=27.71 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 85 MNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+.+..||..|+.++..|.++|+.+..-..+.+.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk~d 35 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKREFQIKED 35 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 456778888888888888888877766555543
No 215
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.38 E-value=55 Score=28.03 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=22.9
Q ss_pred HHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDL---MAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 53 q~~leeL---e~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
..|+++| ..-+..|+.....+..+..........+..|=..|+.++.+++..
T Consensus 49 ~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 49 MAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 344444444444444444444444444444444444444444443
No 216
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=74.03 E-value=21 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
..++..|..+...+..||..|+.++..-+..
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443333
No 217
>PRK10722 hypothetical protein; Provisional
Probab=74.03 E-value=25 Score=30.72 Aligned_cols=51 Identities=25% Similarity=0.328 Sum_probs=27.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 65 QLRKDNHQIITSINIATQHYMNI----ESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l~q~~~~l----e~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+|-.+.+.+.-.+..-+.+|..| +.+...||++..+|+.+|...++=|+.+
T Consensus 148 qlwr~~Q~l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnL 202 (247)
T PRK10722 148 QLWRDGQALQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENL 202 (247)
T ss_pred HHHHHhhHHHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555 5555555555555555554444444433
No 218
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=73.83 E-value=5.4 Score=35.32 Aligned_cols=58 Identities=19% Similarity=0.299 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
++.++|.+|..|+--|..|..++..-...|..+...-.++|+++..+..+|+-|.+--
T Consensus 218 Rmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Q 275 (311)
T PF04642_consen 218 RMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQ 275 (311)
T ss_pred HHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHH
Confidence 4568999999999999999999988888888887777889999999999998776543
No 219
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=73.82 E-value=7.3 Score=28.80 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINI 79 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~ 79 (172)
|+++++.|...+..++.+|..|..++..
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666655555555555443
No 220
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.77 E-value=29 Score=27.95 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044691 84 YMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 84 ~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
...+..++..|+.++..|..+|+
T Consensus 75 ~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 75 FAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 221
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=73.75 E-value=33 Score=33.20 Aligned_cols=43 Identities=9% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRA 96 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRa 96 (172)
+.+..+..+..++..||..|..+|..+.++...+..|+..|.+
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~ 261 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDE 261 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555556666667777777777776666666666665543
No 222
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=73.63 E-value=14 Score=26.60 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=28.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 67 RKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 67 ~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
..+...+..++..+.++...+..||..|+.+...|..
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455666677788888888888999999988877654
No 223
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=73.04 E-value=30 Score=30.94 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=49.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 044691 33 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQL-------RKDNHQIITSINIATQHYMNIESENSVLRAQLGE----- 100 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L-------~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e----- 100 (172)
.|..-++.+=+--.+-|.-||-+|+.||+-+..- +.+...|..++..|.+.|..++.-+..|-..+.-
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv 97 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQV 97 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHH
Confidence 3444455555555666777888888888644433 3344556777777777777777777766544433
Q ss_pred --HHHHHHHHHHHHHHHh
Q 044691 101 --LTHRLHSLNEIISFLD 116 (172)
Q Consensus 101 --L~~rL~~l~~il~~~~ 116 (172)
|...|.+....|+.++
T Consensus 98 ~~lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 98 NFLEGQLNSCKKQIEKLE 115 (307)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 224
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=72.99 E-value=32 Score=31.23 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
++++.|+.++..|+.+-..|..++.... .....-..|..++..+..++..+.++++....
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~ 301 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAEYGD 301 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6677777777777777777766655443 34445556777888888888888888766643
No 225
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.93 E-value=23 Score=33.64 Aligned_cols=55 Identities=15% Similarity=0.266 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
-+..+.+-+.++++|+++...|+.+++.+..+ +..+.+++.+|...+..|...++
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq-------~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQ-------RGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777776666665555544444 44445555555555555555543
No 226
>PRK14127 cell division protein GpsB; Provisional
Probab=72.93 E-value=12 Score=28.62 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 80 ATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 80 l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
+.+.|..+..||..|+.++..|..+|..+..-+.
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3345555566666666666666666666665554
No 227
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=72.64 E-value=19 Score=29.75 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
+.=.|.|+..|+.+|..|+.++..|.. ...+|..+-.++..+.-+|-.
T Consensus 42 vSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~LL~ 89 (225)
T PF04340_consen 42 VSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLALLA 89 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 444568889999999999888877654 467899999888888888763
No 228
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=72.39 E-value=75 Score=29.05 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 86 NIESENSVLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 86 ~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
.+..+-..+++++..+..+|......+......++
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP 322 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAP 322 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECC
Confidence 44455555666666666667666666666654433
No 229
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.34 E-value=74 Score=33.28 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 30 MDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 30 ~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.-.|..|-.+.||+--.---+++-..++++..+.-.|++++..|..++.+|.+++..+...+..|+.....|.-.+..|.
T Consensus 370 ts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~ 449 (1195)
T KOG4643|consen 370 TSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLL 449 (1195)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777889998888888888889999999999999999999999999998888888888888777766666666665
Q ss_pred HHHHHHh
Q 044691 110 EIISFLD 116 (172)
Q Consensus 110 ~il~~~~ 116 (172)
.-+.-+.
T Consensus 450 ~e~~t~~ 456 (1195)
T KOG4643|consen 450 EETSTVT 456 (1195)
T ss_pred HHHHHHH
Confidence 5554443
No 230
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.90 E-value=39 Score=34.44 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+|+++|...+..+......+-.++..+++....+..||..|.+++..+...-..|.+.+..++.
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666667777777777777777777777776666655666666555543
No 231
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=71.90 E-value=49 Score=26.42 Aligned_cols=63 Identities=17% Similarity=0.322 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH---SLNEIISFLDA 117 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~---~l~~il~~~~~ 117 (172)
.+++....+..|...-..+..+-..+...+..|..|...|..-..++..+|. .|..|...++.
T Consensus 22 ~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~ 87 (157)
T PF04136_consen 22 QTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNS 87 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcC
Confidence 3455555566666666666667777777778888888888888888888887 44555556654
No 232
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.86 E-value=48 Score=31.86 Aligned_cols=59 Identities=14% Similarity=0.262 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.++++|..++............+...|..++...+.+...|..++.++..++..|++-+
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444444444444444444444444444444444444444444444
No 233
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=71.56 E-value=48 Score=26.71 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 68 KDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 68 ~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
.++..+..++..++++....+.|...|+.|...|..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555556666666666666665544
No 234
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=71.54 E-value=43 Score=27.47 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 044691 95 RAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 95 Raq~~eL~~rL~~l~~il~~~~~ 117 (172)
|.++.++..+|+.|+.-|..++.
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888999999888888764
No 235
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=71.15 E-value=57 Score=26.86 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+|++=..+...|..-|.-|+.++.........|..++..|+.+...+++.|..-....
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~ 125 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEW 125 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666666666666666677777777777666666666544444
No 236
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=70.99 E-value=41 Score=33.30 Aligned_cols=56 Identities=20% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
...|-+||.+-..|..|..++...++++++.+.....|-..|+..+..-+..++.|
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHH
Confidence 45678889999999999999999999998888888888888888777666655544
No 237
>PRK14160 heat shock protein GrpE; Provisional
Probab=70.84 E-value=54 Score=27.86 Aligned_cols=47 Identities=11% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
..+..|+.++..|+.++..|..++..++.++..+.++..-.|.+...
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777878887777777666665544
No 238
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=70.79 E-value=21 Score=24.38 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=8.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 044691 60 MAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l 80 (172)
+..+..+++||+.|+..+..+
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433
No 239
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=70.71 E-value=9.5 Score=34.58 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 82 QHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 82 q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
+.|..+..||..|+++..+|+.++..++
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e 84 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYE 84 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555433
No 240
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=70.41 E-value=26 Score=26.22 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 93 VLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
.+.+++..-+++...+..|+..+=..+|
T Consensus 62 ~~~~~lk~~r~~~~v~k~v~q~lI~gSg 89 (106)
T PF05837_consen 62 KLEKELKKSRQRWRVMKNVFQALIVGSG 89 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444444444444433333
No 241
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=70.36 E-value=46 Score=25.41 Aligned_cols=58 Identities=22% Similarity=0.257 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
|..-|-.-+..+..|...+..-.+.+..++.||..|.=.-..|..|+..|..-+....
T Consensus 17 LKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 17 LKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333444455666777777777777788888888888888888888888887777553
No 242
>PHA02562 46 endonuclease subunit; Provisional
Probab=70.34 E-value=74 Score=29.27 Aligned_cols=7 Identities=29% Similarity=0.169 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 044691 95 RAQLGEL 101 (172)
Q Consensus 95 Raq~~eL 101 (172)
..+..++
T Consensus 392 ~~~~~~~ 398 (562)
T PHA02562 392 VKTKSEL 398 (562)
T ss_pred HHHHHHH
Confidence 3333333
No 243
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=69.99 E-value=73 Score=29.33 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 86 NIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 86 ~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
.+..+-..|+.++.+|..++..+.+-+.
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666655555443
No 244
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.96 E-value=62 Score=31.92 Aligned_cols=18 Identities=11% Similarity=0.490 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRK 68 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~ 68 (172)
+.+..++.|+.+++.+..
T Consensus 447 e~k~eie~L~~~l~~~~r 464 (652)
T COG2433 447 ELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555544443
No 245
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=69.53 E-value=1.1e+02 Score=33.88 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=43.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 044691 35 RKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYM-------NIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 35 ~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~-------~le~EN~~LRaq~~eL~~rL~~ 107 (172)
..|+..-++-..++=.-....+++.+.+...|+.+...+..++..+...+. .+..|...+..++..|..++..
T Consensus 896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 896 LERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555554555555666666555555555555555555544444 4445555555555555555555
Q ss_pred HHHHHHHH
Q 044691 108 LNEIISFL 115 (172)
Q Consensus 108 l~~il~~~ 115 (172)
+.+.++.+
T Consensus 976 ~~e~~~kL 983 (1930)
T KOG0161|consen 976 LDENISKL 983 (1930)
T ss_pred HHHHHHHH
Confidence 55555444
No 246
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=69.46 E-value=81 Score=27.89 Aligned_cols=6 Identities=67% Similarity=0.800 Sum_probs=3.0
Q ss_pred CChhhh
Q 044691 21 GSEESL 26 (172)
Q Consensus 21 gse~d~ 26 (172)
.+|+|+
T Consensus 9 ~~eed~ 14 (277)
T PF15030_consen 9 ASEEDL 14 (277)
T ss_pred ccchhH
Confidence 445554
No 247
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=69.33 E-value=34 Score=23.47 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYM 85 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~ 85 (172)
.++.|..+|..|.....+|...+..++....
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666555555544443
No 248
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=69.31 E-value=32 Score=32.84 Aligned_cols=57 Identities=12% Similarity=0.172 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIAT------QHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~------q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
+.++.||.++..|+.+-..|..++..-. ..+..+..|-..++.++.+|..++..|.+
T Consensus 568 ~~~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 630 (635)
T PRK11147 568 RELEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELEA 630 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3388899999999988888887775321 14566666777777777777777776663
No 249
>PHA03011 hypothetical protein; Provisional
Probab=69.11 E-value=45 Score=25.80 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
..+++|..+...|-.|-+-+..++..+..-.+.-..|=.-||+++..|...+
T Consensus 64 e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 64 EILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 4566677777777777666666666666555555555555666665555443
No 250
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=69.09 E-value=69 Score=33.31 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
....++.+|+.+...+..++..++..|......+..|+.+...|..+|+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~ 493 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ 493 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555444444444
No 251
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=68.89 E-value=38 Score=25.62 Aligned_cols=41 Identities=17% Similarity=0.266 Sum_probs=18.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 044691 39 ISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINI 79 (172)
Q Consensus 39 lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~ 79 (172)
..-||.|+.-.-=++...+.|+.--..|..+...-..+|..
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~ 94 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDE 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666555444444444444333443333333333333
No 252
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.74 E-value=1.2e+02 Score=31.10 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044691 93 VLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il~~ 114 (172)
.|+++...|..+|..||.-+.-
T Consensus 434 ~~nak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 434 YLNAKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 253
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=68.71 E-value=65 Score=26.49 Aligned_cols=61 Identities=10% Similarity=0.174 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMN-IESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~-le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
-...+.+|+.+...|+.+...|...+..+.++... ...++.....++..|...-+.|...+
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666655543 34445555555555555544444433
No 254
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=68.55 E-value=13 Score=25.88 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
+-|..++..|+..|.+|..++..|
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444433333333
No 255
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=68.37 E-value=56 Score=25.64 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
...+..|+..+...+.....-.+.+.+|.+..+.+...+
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444444333333
No 256
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=68.20 E-value=60 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRK---DNHQIITSINIATQHY 84 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~---EN~~L~~~l~~l~q~~ 84 (172)
.+..|.+...++..|+. .|..|..++..|+..+
T Consensus 32 ~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 32 LKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33444445555555554 4444554444444433
No 257
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=68.09 E-value=46 Score=31.36 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIE-SENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le-~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+.+.+.+...+.+...|+.++..+.+.+...+ +++..++.....-..++++++++.+.-+
T Consensus 44 ~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~ 104 (459)
T KOG0288|consen 44 RAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELRE 104 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666655544433 3333334444444567778888775443
No 258
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=68.05 E-value=71 Score=26.70 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINI 79 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~ 79 (172)
...|+..+..|+.+...++.++..
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~ 161 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEE 161 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433333333333
No 259
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=67.91 E-value=41 Score=23.85 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
++++...+..++.+-..+..+...+..+...+..+=..-...+..+-+.+..+.+.++.
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555554444444443333333344444444444444433
No 260
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=67.84 E-value=24 Score=24.52 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
....+..++.++..++.+|..|..++..+
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666665544
No 261
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=67.71 E-value=28 Score=26.33 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
|...+..+.+++..+..++..|+..+.++..+++.|
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444
No 262
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=67.42 E-value=52 Score=27.62 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRK 68 (172)
Q Consensus 56 leeLe~qv~~L~~ 68 (172)
++.|+.++.....
T Consensus 94 i~~lE~~l~ea~~ 106 (237)
T PF00261_consen 94 IEELEQQLKEAKR 106 (237)
T ss_dssp HHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 263
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.12 E-value=72 Score=26.45 Aligned_cols=70 Identities=13% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 46 RRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 46 RRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
...+.+..+.+.+-+.....++.+-..|...+..++++...+..++..--.++..|......+++-+..+
T Consensus 109 ~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 109 LEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555555555555554444444444455555555555444444433
No 264
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=67.07 E-value=45 Score=32.31 Aligned_cols=56 Identities=18% Similarity=0.245 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
++++-+.++.+++..+...-..+...+...+........||..|-.++..+..+++
T Consensus 195 keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 195 KEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444444444444444444444444444444444444455555555544444444
No 265
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=66.79 E-value=69 Score=26.06 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+..-...+..++..++.+...|+..+....+++.....-|
T Consensus 77 ~~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raI 116 (158)
T PF09486_consen 77 LRRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAI 116 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444445555555444444444444444433
No 266
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=66.76 E-value=54 Score=30.08 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQH----YMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~----~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
|..++..|+.+-..+..++..+... ...+..+-..|++++.+|..++..+.+-+
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAEL 99 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443211 33445555566666666666665555544
No 267
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=66.58 E-value=70 Score=26.12 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
+...+..|...+..++..=..++.+...|..+
T Consensus 110 ~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 110 AEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 268
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=66.34 E-value=51 Score=24.43 Aligned_cols=38 Identities=16% Similarity=0.322 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 83 HYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
.+..+..+...|+.++..+...|..+.---.++..+..
T Consensus 82 ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~~ 119 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVVP 119 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444444555555555555544444455554433
No 269
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.28 E-value=1e+02 Score=32.63 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh---
Q 044691 43 ESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH---SLNEIISFLD--- 116 (172)
Q Consensus 43 ESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~---~l~~il~~~~--- 116 (172)
++.+.+-.+++..+.++...+..+..|-.+....+..+......+...-..||.++.+++.-+. +-+.|+..+-
T Consensus 531 ~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~k 610 (1293)
T KOG0996|consen 531 LASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLK 610 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445566677778888888888888888888888888777777777777788888888877555 3445555442
Q ss_pred ---hcCCCCCCCcCCchh
Q 044691 117 ---ASNNNDDDENNGGAA 131 (172)
Q Consensus 117 ---~~~g~~~~~~~~~~~ 131 (172)
...|+++.+-|....
T Consensus 611 esG~i~Gf~GRLGDLg~I 628 (1293)
T KOG0996|consen 611 ESGRIPGFYGRLGDLGAI 628 (1293)
T ss_pred HcCCCCcccccccccccc
Confidence 245666655444443
No 270
>PRK14127 cell division protein GpsB; Provisional
Probab=66.22 E-value=49 Score=25.38 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
.|+++...+..|..||..|. .+|..|++++.++..++..
T Consensus 31 FLd~V~~dye~l~~e~~~Lk--------------~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQ--------------QENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhcc
Confidence 44444444555555544443 4455555555555555553
No 271
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=66.04 E-value=1.1e+02 Score=31.66 Aligned_cols=31 Identities=23% Similarity=0.223 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 044691 42 RESARRSRMRKQKHLDDLMAQVAQLRKDNHQ 72 (172)
Q Consensus 42 RESARRSR~RKq~~leeLe~qv~~L~~EN~~ 72 (172)
-++++.+-....+...+|..++.++..+-..
T Consensus 454 le~~~~s~~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 454 LESAEQSIDDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333
No 272
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.04 E-value=1.4e+02 Score=31.32 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 42 RESARRSRMRKQKHLDDLMAQVAQLR 67 (172)
Q Consensus 42 RESARRSR~RKq~~leeLe~qv~~L~ 67 (172)
.++.+.-+.+++..+..|+.++..+.
T Consensus 845 ~e~l~~e~e~~~~eI~~Lq~ki~el~ 870 (1311)
T TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELK 870 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555544433333
No 273
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=65.39 E-value=29 Score=27.16 Aligned_cols=45 Identities=16% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
.+|.++|+.|+.|+..+..-...|..++.-|+-.....|+....+
T Consensus 28 aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 28 AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 274
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=65.31 E-value=1.1e+02 Score=27.74 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 71 HQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 71 ~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
..|..-+...+++...|..|...|++++.++....+.|..-+....
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 3444455555666666666666666666666666666666665554
No 275
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.30 E-value=14 Score=34.89 Aligned_cols=57 Identities=23% Similarity=0.237 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
+.|.++|+.|..+|..|..++..++-.|..+..||.-|+.--.+++.|...-++.|.
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfis 102 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFIS 102 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHH
Confidence 567888999999999999999999999999999999999888888888875555554
No 276
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=65.27 E-value=66 Score=30.55 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
..+|++.|...+.+....-..+...+..+.++...+..+-..|+-++..|..+-+.|...++.
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888888888888888888888888888888888888888888888888887754
No 277
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=65.15 E-value=88 Score=26.73 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
....|+.+......+...|..++..+......|..+...-..+...|..+|.....-.
T Consensus 62 ~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 62 EKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455566667777777777777777777777777777777766555543
No 278
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=65.11 E-value=47 Score=23.55 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=28.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
.+....+..-..|...+....++-..|...+..|-.++..|...+.-|
T Consensus 21 ~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 21 KQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555566666666666666666666666666666666544
No 279
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.09 E-value=2e+02 Score=30.73 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESE-------NSV---LRAQLGELTHRLHSL 108 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~E-------N~~---LRaq~~eL~~rL~~l 108 (172)
+|+-+++.+..+.+.+...+..+..++..+++. +.. |++++.+|..++..+
T Consensus 817 ~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 817 ELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433 333 345566666666555
No 280
>PTZ00464 SNF-7-like protein; Provisional
Probab=64.89 E-value=85 Score=26.48 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=14.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIES 89 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~ 89 (172)
.+...++.+-..+...+..+.+....++.
T Consensus 68 K~KK~~E~ql~~l~~q~~nleq~~~~ie~ 96 (211)
T PTZ00464 68 QQKRMYQNQQDMMMQQQFNMDQLQFTTES 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555554443
No 281
>PRK11546 zraP zinc resistance protein; Provisional
Probab=64.82 E-value=46 Score=26.72 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
.....+|..++-.-+.|-..|...-..=.++..+|..|...|+.++.+++-++.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333356778888888888888887765443
No 282
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=64.58 E-value=63 Score=24.86 Aligned_cols=76 Identities=18% Similarity=0.157 Sum_probs=36.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 37 RMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 37 R~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
=+..|+.-|...=. ++..++++..++..+-.+-..|..+...+.+++..+ ..+-..-+=...|+..+....+.-+.
T Consensus 39 l~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~ 114 (150)
T PF07200_consen 39 LLAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEE 114 (150)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34456555554432 345555555655555555555555555555555554 33333333333444444444443333
No 283
>PRK12705 hypothetical protein; Provisional
Probab=64.40 E-value=1.4e+02 Score=28.65 Aligned_cols=61 Identities=8% Similarity=0.147 Sum_probs=23.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 38 MISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 38 ~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
.+..++-+.+.|....+.+.+...++... -..|..+-..+.++...|+.....|..+-..|
T Consensus 54 ~~~~~~~~~~~~~~~e~e~~~~~~~~~~~---e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l 114 (508)
T PRK12705 54 LLEAKELLLRERNQQRQEARREREELQRE---EERLVQKEEQLDARAEKLDNLENQLEEREKAL 114 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333222 12233333334444444444444443333333
No 284
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=64.27 E-value=69 Score=31.44 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 48 SRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 48 SR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
++..-.++-.+|+++|.+|+.++..|..+|..+.......+.+-..-..++.++++|=--|.
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~ 134 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLE 134 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 285
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=64.25 E-value=72 Score=25.43 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+......-+++...|..++..++.....+..|=..|+.+...|...|+....-|.-++.
T Consensus 43 ~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~ 101 (140)
T PF10473_consen 43 LILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELES 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555555555555555555555555555555555555554444443
No 286
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=64.09 E-value=57 Score=24.15 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDAS 118 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~ 118 (172)
+..+.+.|..||++|..+... ..-+.+|...|.+..+=..++. -.+|++.+...
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~-----~~~qvkn~~vrqknee~~~~~s-r~~V~d~L~q~ 81 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAV-----AETQVKNAKVRQKNEENTRRLS-RDSVIDQLQQH 81 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHhhccCC-HHHHHHHHHHc
Confidence 334466666666666655543 3345678888888777665553 45666666543
No 287
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=63.97 E-value=49 Score=23.41 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
+.++.++.++..+..|-..+..+.+.+.+........=..+-..+.++..-+..++
T Consensus 33 ~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~ 88 (90)
T PF06103_consen 33 KTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN 88 (90)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555555444444445555555555554443
No 288
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=63.89 E-value=1e+02 Score=29.37 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 71 HQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 71 ~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.++..++..+..+...+..+|..|++.......+|..+++..+..
T Consensus 385 ~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 385 QQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666777777776666666666666555443
No 289
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=63.85 E-value=83 Score=25.97 Aligned_cols=56 Identities=21% Similarity=0.284 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIE--SENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le--~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
+...++.|++++..+......+.+.+..-. +.-..|...+.+++.++..+.-.+..
T Consensus 46 itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~e 103 (165)
T PF09602_consen 46 ITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQE 103 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777777777777666666544333 44455666667777776665555533
No 290
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=63.75 E-value=1e+02 Score=27.70 Aligned_cols=9 Identities=11% Similarity=0.505 Sum_probs=4.2
Q ss_pred HHHHHHHHh
Q 044691 108 LNEIISFLD 116 (172)
Q Consensus 108 l~~il~~~~ 116 (172)
|+.++..++
T Consensus 161 LEsLLqsME 169 (305)
T PF15290_consen 161 LESLLQSME 169 (305)
T ss_pred HHHHHHHHH
Confidence 444454443
No 291
>PRK10963 hypothetical protein; Provisional
Probab=63.42 E-value=31 Score=28.89 Aligned_cols=54 Identities=24% Similarity=0.244 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH---SLNEIISFLD 116 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~---~l~~il~~~~ 116 (172)
.|.|+..|+.+|..|..++..+.. ...+|..+-.++..|.-+|- ++.+++..+.
T Consensus 42 ~ErQ~~~LR~r~~~Le~~l~~Li~----~A~~Ne~l~~~~~~l~l~Ll~a~~~~~l~~~L~ 98 (223)
T PRK10963 42 VEWQMARQRNHIHVLEEEMTLLME----QAIANEDLFYRLLPLQSRLAAADSLQDMLMRLH 98 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 456777888888888777766543 46788888888888877775 4455555543
No 292
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=63.28 E-value=33 Score=26.04 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 70 NHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 70 N~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
...+..++.....++..|.++|..|++++..|.+-
T Consensus 52 ~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 52 VLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444455555666666677777777777777776
No 293
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=63.23 E-value=72 Score=29.35 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESE---NSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~E---N~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.+-.|..+..+|..+-..|+.+.+.+...+..+... -..|++++.+|..++..++..+..++
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 93 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELE 93 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555443222 23577777777777777777776665
No 294
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.04 E-value=76 Score=25.26 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+.++++...+..++..++.++......+..+.+.+..+
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666667777777777777666666666665444
No 295
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.99 E-value=44 Score=32.88 Aligned_cols=67 Identities=15% Similarity=0.160 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
+.++.|..+|..|..+..+........-+.-..|..|...|+.++.+|...+.....-++.++.+-|
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~ 74 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALG 74 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667776666666655555555555666677777777777777777766666666654433
No 296
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=62.97 E-value=56 Score=32.57 Aligned_cols=52 Identities=23% Similarity=0.246 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
..+.|+.+...|+.|..+++.+=..+-+.|..|+.||-.|..++..|+.-=-
T Consensus 70 ~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~sQv 121 (717)
T PF09730_consen 70 ECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQSQV 121 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHH
Confidence 3556677777777777777777777778888899999999988888875433
No 297
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=62.83 E-value=71 Score=24.85 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 87 IESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 87 le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
....=..++.+..+|.+|+-.+-..++++.
T Consensus 70 ~~~rl~~~r~r~~~L~hR~l~v~~~~eilr 99 (141)
T PF13874_consen 70 TSARLEEARRRHQELSHRLLRVLRKQEILR 99 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455556666666666655555554
No 298
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=62.82 E-value=99 Score=29.41 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 69 DNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 69 EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
||..|...+..-.+.+.....||..|.+.-.+|..||..-..-+
T Consensus 443 EnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrL 486 (593)
T KOG4807|consen 443 ENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRL 486 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333333333344444555555555555555555433333
No 299
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=62.67 E-value=58 Score=24.03 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIA---TQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l---~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
..++.||.++++.+..-..+..++... .+....++.|-..|+.++.....+|+.|..
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 345666666666665555554444322 234555666666666666666666665543
No 300
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=62.62 E-value=78 Score=25.25 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
..+|..+......+-.+.......+..+...+..+...-..|......|-.+-..|..+.+.+..
T Consensus 6 ~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~ 70 (157)
T PF04136_consen 6 LDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISE 70 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777788888888888888888999999888888888888877766666666665543
No 301
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=62.59 E-value=42 Score=24.80 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=22.1
Q ss_pred HHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 044691 66 LRKDNHQIITSINIATQ------HYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 66 L~~EN~~L~~~l~~l~q------~~~~le~EN~~LRaq~~eL~~ 103 (172)
+..+|..|..+|..|+. .......||-.|+.++..|+.
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555543 334556778888777766554
No 302
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.58 E-value=77 Score=30.23 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 044691 36 KRMISNRESARRSRMRKQKH----LDDLMAQVAQLRKDNHQIITSINIATQHYMNIE----SENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 36 rR~lsNRESARRSR~RKq~~----leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le----~EN~~LRaq~~eL~~rL~~ 107 (172)
+-..+|=++++.+=.||.+. ++.++.+...++.+|..|.........++..++ ..+.....++.+|..+|+.
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrD 446 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRD 446 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777776554 456667777777777777776666655554443 2233333344444444443
Q ss_pred H
Q 044691 108 L 108 (172)
Q Consensus 108 l 108 (172)
|
T Consensus 447 l 447 (493)
T KOG0804|consen 447 L 447 (493)
T ss_pred H
Confidence 3
No 303
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=62.56 E-value=68 Score=24.57 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044691 91 NSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 91 N~~LRaq~~eL~~rL~~l~ 109 (172)
-..|..++.++..|+..|+
T Consensus 100 k~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 100 KEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555554443
No 304
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.55 E-value=72 Score=31.10 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL----RAQLGELTHRLHSLNEII 112 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L----Raq~~eL~~rL~~l~~il 112 (172)
=+.|++.+..-+..+...+..+..++..+...|..+..++..+ +.++..|...|..++.++
T Consensus 444 Lq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~ 508 (581)
T KOG0995|consen 444 LQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVL 508 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777778888888888888888888877776666655 556666777766666555
No 305
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=62.54 E-value=84 Score=28.27 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
|..++..+.++...+..+|...+..+..|..+|..+.....-+..
T Consensus 106 L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~ 150 (355)
T PF09766_consen 106 LEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQE 150 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444445555555556666666666666666655555555444
No 306
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=62.50 E-value=66 Score=26.90 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 81 TQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 81 ~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
..++..|..++..|+.++..-++||..|.+|=.-+..
T Consensus 129 D~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSS 165 (179)
T PF13942_consen 129 DSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSS 165 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 4455666778888999999999999999998877754
No 307
>PF14645 Chibby: Chibby family
Probab=62.45 E-value=43 Score=25.75 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLR 95 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LR 95 (172)
|..+..+|+.||.-|+-++..|---+....+|-..+.
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~e 112 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLE 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666555544444444443333
No 308
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=62.31 E-value=91 Score=25.91 Aligned_cols=32 Identities=31% Similarity=0.555 Sum_probs=19.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHH
Q 044691 44 SARRSRMRK-QKHLDDLMAQVAQLRKDNHQIIT 75 (172)
Q Consensus 44 SARRSR~RK-q~~leeLe~qv~~L~~EN~~L~~ 75 (172)
|||.-+.+. +..+.+|..++..|..||..|..
T Consensus 8 Sar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~ 40 (194)
T PF15619_consen 8 SARLHKIKELQNELAELQRKLQELRKENKTLKQ 40 (194)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544 34566777777777777776643
No 309
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=62.18 E-value=71 Score=28.64 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNI 87 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~l 87 (172)
...+.|..||+.|+..|..+++++...+..+..|
T Consensus 78 ~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 78 NEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455666677777777766666666665555544
No 310
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=62.15 E-value=72 Score=28.72 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNI 87 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~l 87 (172)
+.+|+.+...+..++..+.+++..+
T Consensus 95 ~~~l~~~l~~~~~~l~~l~~~~~~l 119 (372)
T PF04375_consen 95 LQQLQQELAQLQQQLAELQQQLAAL 119 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 311
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=62.05 E-value=39 Score=29.42 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
.+..+..||..||.++.+|..++..
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~ 91 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEI 91 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777776666444443
No 312
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=61.76 E-value=97 Score=26.07 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=41.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+.-|+.|-..|...+..-+.+...++.|+..+..++.+=..+++++--++
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678888999999999999999999999999999988877887765444
No 313
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=61.62 E-value=60 Score=23.60 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
|..++..-+.|...|..-++.++..+.....-|..|..+...
T Consensus 10 L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~ 51 (76)
T PF11544_consen 10 LKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLN 51 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444433333
No 314
>PRK11281 hypothetical protein; Provisional
Probab=61.58 E-value=1.5e+02 Score=31.18 Aligned_cols=83 Identities=23% Similarity=0.215 Sum_probs=50.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQ-----------KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq-----------~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
+|.+.++-.|+.-...-+.+-+ .....|+++...|..+|..++.++....+...-....-..+++++..
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~ 238 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3445555556554444444332 23455667777777777777666665555555555555666777777
Q ss_pred HHHHHHHHHHHHHH
Q 044691 101 LTHRLHSLNEIISF 114 (172)
Q Consensus 101 L~~rL~~l~~il~~ 114 (172)
+..+++.|++.+..
T Consensus 239 ~~~~~~~lq~~in~ 252 (1113)
T PRK11281 239 LEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777754
No 315
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=61.54 E-value=29 Score=32.36 Aligned_cols=60 Identities=18% Similarity=0.294 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASN 119 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~ 119 (172)
++.+|+.++..++.....+.. ...-..+..+-..|..++..|.+++..|..+++.++...
T Consensus 171 Rl~~L~~qi~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 171 RLDELEEQIEKHEEKLGELEL-----NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHHHHhhhcccc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 355566666665554444332 122233445566677777778888888888887776543
No 316
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=61.37 E-value=1.2e+02 Score=27.64 Aligned_cols=25 Identities=8% Similarity=0.220 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
.++|+.+.++|+..+.....+++++
T Consensus 6 W~eL~~efq~Lqethr~Y~qKleel 30 (330)
T PF07851_consen 6 WEELQKEFQELQETHRSYKQKLEEL 30 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 317
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=61.28 E-value=83 Score=25.15 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
+++|..++..|+.-......++..+.....+|..|-..|
T Consensus 8 iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL 46 (134)
T PF15233_consen 8 IEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSL 46 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444
No 318
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=61.19 E-value=72 Score=35.13 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 46 RRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 46 RRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
|..+.+.-..+.+|..++..|+.+...|...+..+..++....+++..|+.+......|.+.|..
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~ 1299 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLE 1299 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666666666666555555555544433
No 319
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=60.97 E-value=36 Score=25.14 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=32.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
+|...-.||-.|+.++..++.-+ ...|-..|-+++..|+..+
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhhC
Confidence 34556679999999998887776 6778888889988887653
No 320
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.87 E-value=2.1e+02 Score=30.07 Aligned_cols=61 Identities=11% Similarity=0.232 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+....+.|.-++.+|+.+-..+..++..+...+..+..|+..|++.+......+..+...|
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el 873 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAEL 873 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 3445566777777777777777777777777777777777777776665554444433333
No 321
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=60.81 E-value=33 Score=29.99 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=4.4
Q ss_pred CCCcccccc
Q 044691 157 YLNQPIMAS 165 (172)
Q Consensus 157 ~~~qpi~as 165 (172)
+.++|+++.
T Consensus 145 ~~~~~Vi~~ 153 (284)
T COG1792 145 KKGMPVVAE 153 (284)
T ss_pred cCCCeEEEC
Confidence 335565543
No 322
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.65 E-value=2.1e+02 Score=29.56 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 77 INIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 77 l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
...-++....+.+.+..|..++..|..+++.|..-|.-+
T Consensus 425 k~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dv 463 (1118)
T KOG1029|consen 425 KNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDV 463 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 333344455566677777777777888777776665443
No 323
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.38 E-value=83 Score=31.66 Aligned_cols=57 Identities=26% Similarity=0.306 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIIT---------------------SINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~---------------------~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
.+|.++..++..+..||..|.. ++..|..++..++.||..|+-++--|...|.-.+.
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~ 169 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNE 169 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777788888887665 45667788888899999999888888877764443
No 324
>PRK10698 phage shock protein PspA; Provisional
Probab=60.34 E-value=1e+02 Score=25.90 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=34.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
.++..|+.+.......+..|...+..|+..-..++.+-..|..|.+........-+..+|
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~ 158 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDS 158 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555555566666666666666666666666666666666655554444443333
No 325
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=60.17 E-value=1.2e+02 Score=26.86 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
-+++.+.|..+...++.|+.........|..-|..|..+|..|+.+...+.
T Consensus 48 ~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~ 98 (309)
T PF09728_consen 48 LQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRA 98 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999999888888999999999999999987665443
No 326
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=60.10 E-value=55 Score=33.04 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
+.+-|+.|+..|...+..-.++......||..+..++..|..|...|..
T Consensus 705 q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~ 753 (961)
T KOG4673|consen 705 QLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEV 753 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555444433
No 327
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.87 E-value=69 Score=29.47 Aligned_cols=38 Identities=11% Similarity=0.277 Sum_probs=17.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
-+.|..--++|....+.|+++.+.|...-.+|...+.+
T Consensus 241 ~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 241 EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333344444444444455555544444455444444
No 328
>PRK04863 mukB cell division protein MukB; Provisional
Probab=59.76 E-value=1.8e+02 Score=31.51 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINI-------ATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDAS 118 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~-------l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~ 118 (172)
.+++|+.++.....+...+..++.. +.+.+..+..+-..+...+..+..++..+...+..+..+
T Consensus 356 ~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 356 DLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 444444444444444445555555555555555554433
No 329
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=59.72 E-value=33 Score=32.57 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHHHHHHHHH
Q 044691 30 MDQRKRKRMISNRESARRSRMRKQKHL----------DDLMAQVAQLRKDNHQIITSIN 78 (172)
Q Consensus 30 ~deRr~rR~lsNRESARRSR~RKq~~l----------eeLe~qv~~L~~EN~~L~~~l~ 78 (172)
...||.|-|++--||-|+...-=..+- .+|..+|.+|+.+|..|..++.
T Consensus 252 rvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~ 310 (472)
T KOG0709|consen 252 RVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLK 310 (472)
T ss_pred HHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHH
Confidence 344444445555555555554333221 2445555555555555555443
No 330
>PF14282 FlxA: FlxA-like protein
Probab=59.70 E-value=71 Score=23.84 Aligned_cols=11 Identities=27% Similarity=0.462 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 044691 58 DLMAQVAQLRK 68 (172)
Q Consensus 58 eLe~qv~~L~~ 68 (172)
.|..++..|..
T Consensus 30 ~Lq~ql~~l~~ 40 (106)
T PF14282_consen 30 QLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHc
Confidence 34444444443
No 331
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=59.62 E-value=1.2e+02 Score=33.53 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 48 SRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 48 SR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
.=...++.++.|..+|..++.++..+.........++..|...-..+|+++..|..+-..|...|...+.
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q 724 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQ 724 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678899999999999999999999999999999999999999999999999999999888876653
No 332
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=59.55 E-value=1.9e+02 Score=28.72 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 044691 47 RSRMRKQKHLDDLMAQVAQLRKDNHQIITSI 77 (172)
Q Consensus 47 RSR~RKq~~leeLe~qv~~L~~EN~~L~~~l 77 (172)
++|.+=++.+..||.++...+..-..+..++
T Consensus 481 ~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL 511 (697)
T PF09726_consen 481 QARQQDKQSLQQLEKRLAEERRQRASLEKQL 511 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666655554444444333
No 333
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=59.33 E-value=99 Score=28.54 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=16.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIE--SENSVLRAQLG 99 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le--~EN~~LRaq~~ 99 (172)
+..++.+...+..++..|.+++..+. ..|..|-+++.
T Consensus 101 l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWlLaEae 139 (390)
T PRK10920 101 LDQANRQQAALAKQLDELQQKVATISGSDAKTWLLAQAD 139 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHH
Confidence 44444444444444444444444443 22344444443
No 334
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=59.31 E-value=37 Score=25.54 Aligned_cols=64 Identities=13% Similarity=0.242 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSI-NIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l-~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+.....++..+.++..|...|...+ .........-..+...+..+...|..+|.....++..++
T Consensus 7 ~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq 71 (100)
T PF06428_consen 7 RERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQ 71 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666554 333333333333444555555555555555555554443
No 335
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=59.25 E-value=2.2e+02 Score=29.81 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=38.4
Q ss_pred cCCCChhhhHh-hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044691 18 QNSGSEESLQA-LMDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQII 74 (172)
Q Consensus 18 ~~sgse~d~~~-~~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~ 74 (172)
.++|.|.++.+ ..|-..+-|=+.||.-.+-++++..++-++.+.+-..|...-+.|.
T Consensus 1012 g~s~~e~~~~~~~~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~ 1069 (1189)
T KOG1265|consen 1012 GSSGGESTPAALNSDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLR 1069 (1189)
T ss_pred cCCCCCCchhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555432 3345566677888888888888888888877777777766555544
No 336
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=59.07 E-value=1.2e+02 Score=27.56 Aligned_cols=45 Identities=24% Similarity=0.307 Sum_probs=29.6
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 044691 43 ESARRSRMRK------QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNI 87 (172)
Q Consensus 43 ESARRSR~RK------q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~l 87 (172)
|=||-+-.|- +.+-+.+|.++.+|+.+|.-+..+-..+.++|..-
T Consensus 16 ~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrec 66 (328)
T PF15369_consen 16 ELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYREC 66 (328)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566554432 34456677778888888887777777777766543
No 337
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=58.88 E-value=23 Score=26.11 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
+...+..|...+..+..+|..|..++.+++.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777888889999999999999988764
No 338
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=58.86 E-value=1.4e+02 Score=27.08 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=44.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 33 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRK------------------DNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~------------------EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
++.++++++|...-..=.||..++.-=...+.+|+. ..--|..++..|.+++..++.|-..+
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr~g~~~~~~~~~~~~~~~~D~v~LLqkk~~~l~~~l~~~~~eL~~~ 201 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLRRGRSKNRHNRPRNPSSNSDRVILLQKKIDELEERLNDLEKELEIT 201 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCcccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888887766666665444333445555543 12223444444444445555554445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 044691 95 RAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 95 Raq~~eL~~rL~~l~~il~~~~ 116 (172)
...+.--..+-.-|+++|.-.+
T Consensus 202 ~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 202 KKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 5544444444455566665544
No 339
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=58.85 E-value=52 Score=30.02 Aligned_cols=14 Identities=14% Similarity=0.183 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 044691 93 VLRAQLGELTHRLH 106 (172)
Q Consensus 93 ~LRaq~~eL~~rL~ 106 (172)
.++.++..+..++.
T Consensus 47 ~~~~~~~~~~~~~~ 60 (398)
T PTZ00454 47 NLKRELIRAKEEVK 60 (398)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 340
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=58.73 E-value=89 Score=25.01 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL---RAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L---Raq~~eL~~rL~~l~~il~~~~~ 117 (172)
+-++.|+.++..|+.+..++...+.....+-. ..||+.- |.+...+..|++.|...|+....
T Consensus 11 eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GD--lsENaey~aak~~q~~~e~RI~~L~~~L~~A~i 75 (158)
T PRK05892 11 AARDHLEAELARLRARRDRLAVEVNDRGMIGD--HGDQAEAIQRADELARLDDRINELDRRLRTGPT 75 (158)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhCEE
Confidence 34567788888887766666665544333221 2445443 44555566677777777765544
No 341
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=58.68 E-value=64 Score=23.01 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESEN 91 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN 91 (172)
|...|..|..|+..|..++....+.+..+..+.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888887777777666555
No 342
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=58.49 E-value=56 Score=31.63 Aligned_cols=64 Identities=22% Similarity=0.226 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
..++++...++..+...-......+..+......++.+|..|..+......-+..|+.++..+.
T Consensus 36 ~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~ 99 (701)
T PF09763_consen 36 MEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLS 99 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcC
Confidence 3566777777777777777778888888888999999999998888887777778888877664
No 343
>PRK11281 hypothetical protein; Provisional
Probab=58.48 E-value=2.4e+02 Score=29.65 Aligned_cols=58 Identities=28% Similarity=0.225 Sum_probs=50.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
+.++-..|..|...+...+++...+..+|...+.++..+++-++.+++.++.+..+..
T Consensus 280 i~~~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~l~~s~~ 337 (1113)
T PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSLL 337 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence 4445567999999999999999999999999999999999999999999988876543
No 344
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=58.38 E-value=1.5e+02 Score=27.05 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=30.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
.++..|..+......++..++++|.....-...+..++.++..+|......++
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666666666666666666666666666666555555443
No 345
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=58.27 E-value=78 Score=23.87 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 68 KDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 68 ~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
..+..|..++..+.+.+..+...+..+.+++..|..
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 346
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=58.26 E-value=1.2e+02 Score=29.08 Aligned_cols=55 Identities=20% Similarity=0.375 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHH-----------hHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRK-----------DNHQIITSINIA------------------------TQHYMNIESENSVLRAQ 97 (172)
Q Consensus 53 q~~leeLe~qv~~L~~-----------EN~~L~~~l~~l------------------------~q~~~~le~EN~~LRaq 97 (172)
-..+..|.++++.|+. ||..|+.++..+ +.++..++.||..|..|
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kq 463 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQ 463 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655 777777776655 35556677888888888
Q ss_pred HHHHHHHHHH
Q 044691 98 LGELTHRLHS 107 (172)
Q Consensus 98 ~~eL~~rL~~ 107 (172)
+..|..+-..
T Consensus 464 iekLK~kh~~ 473 (488)
T PF06548_consen 464 IEKLKRKHKM 473 (488)
T ss_pred HHHHHHHHHH
Confidence 8888876553
No 347
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=58.23 E-value=54 Score=21.97 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044691 91 NSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 91 N~~LRaq~~eL~~rL~~l~~il~ 113 (172)
...++..+..|..++..|...+.
T Consensus 75 ~~~i~~~~~~l~~~w~~l~~~~~ 97 (105)
T PF00435_consen 75 SDEIQEKLEELNQRWEALCELVE 97 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666655553
No 348
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=58.18 E-value=1.4e+02 Score=26.91 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNH-QI----ITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 56 leeLe~qv~~L~~EN~-~L----~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
+..|+.++.++..... .+ .............++.+...+..++.+|..++.
T Consensus 62 ~~~L~~ql~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~ 117 (372)
T PF04375_consen 62 LQALQQQLQQLQQQLEAQQAQQLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLA 117 (372)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555544444333 22 222223333344444555555555555555544
No 349
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=58.16 E-value=1.8e+02 Score=28.47 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 69 DNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 69 EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+-..|..++..+..++.....+|..|-.-..+...+|..|...+..+.
T Consensus 88 E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~ 135 (617)
T PF15070_consen 88 EAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQ 135 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335577777777777777777777775555555556666555555443
No 350
>PRK14143 heat shock protein GrpE; Provisional
Probab=57.78 E-value=96 Score=26.73 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSI 77 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l 77 (172)
+++|..+.-++.++...++++.
T Consensus 83 ~~elkd~~lR~~AdfeN~RKR~ 104 (238)
T PRK14143 83 LEELNSQYMRIAADFDNFRKRT 104 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 351
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.74 E-value=60 Score=28.79 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 40 SNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 40 sNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
.+-+.++.-=..++..+.+++.++..|+.+......+...+
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l 268 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQEL 268 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445566667777777776666555444443333
No 352
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=57.70 E-value=1.3e+02 Score=26.35 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=32.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 35 RKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 35 ~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
.+++..=+..=+--..+-..++..|+.+|.+|.+.......++..|.
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566677788888888888887777777777764
No 353
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=57.65 E-value=1.2e+02 Score=30.91 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQ---------------IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~---------------L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+--++.+++|.++.=|+.|-.. .-.++..++.+..+++.|-.+|.+-..+|+..+..|.+...++
T Consensus 53 ~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl 132 (829)
T KOG2189|consen 53 NEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVL 132 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666655544 1456667777777777777777777777777777777777777
Q ss_pred hhcCCCCC
Q 044691 116 DASNNNDD 123 (172)
Q Consensus 116 ~~~~g~~~ 123 (172)
+.+..+|.
T Consensus 133 ~~t~~Ff~ 140 (829)
T KOG2189|consen 133 EKTDEFFS 140 (829)
T ss_pred Hhhhhhcc
Confidence 76666554
No 354
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=57.59 E-value=90 Score=27.48 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNNNDDD 124 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g~~~~ 124 (172)
+.-.+.+.|..|. .-...+..++..+++.+..+..+...|.+++...+..|.-...-++.++.+-+.|.|
T Consensus 156 r~~e~~~iE~~l~---~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmd 225 (267)
T PF10234_consen 156 RPLELNEIEKALK---EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMD 225 (267)
T ss_pred CCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 4444555554443 345566777777888888888888888888777777777777777777777666653
No 355
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=57.40 E-value=60 Score=22.25 Aligned_cols=44 Identities=11% Similarity=0.248 Sum_probs=21.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
.++.+|..+.+.|..++..|......+..+-...+.+.+.--.|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566665555555555555444444444444333333333333
No 356
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=57.32 E-value=1.1e+02 Score=25.34 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=19.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 64 AQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 64 ~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
..|+.+-..+...+..|..++..|+.+=..++++-..|..|.+...
T Consensus 102 ~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 102 EALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444444444333
No 357
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=57.16 E-value=1e+02 Score=29.72 Aligned_cols=65 Identities=22% Similarity=0.280 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
=.++++.+...|+.|......+..++.........+..+=..|+.+...+..|-+-+...++.+.
T Consensus 43 v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~ 107 (618)
T PF06419_consen 43 VNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFT 107 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34678888888888888888888888888888888999999999999888888888888886653
No 358
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=56.92 E-value=44 Score=26.45 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
|.+++..++.........+..|+.+...-.+|-..||.++.++...-..|
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555554444444555555555555555555555555555444433
No 359
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=56.89 E-value=67 Score=22.69 Aligned_cols=62 Identities=19% Similarity=0.346 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENS--------VLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~--------~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.++.+..++..|...-..|...+..+...+..+..-+. .-..++..++.++..++..+..++
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk 84 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLK 84 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777777666655544111 134455556666666666665553
No 360
>PLN02678 seryl-tRNA synthetase
Probab=56.89 E-value=94 Score=29.14 Aligned_cols=54 Identities=11% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 60 MAQVAQLRKDNHQIITSINIAT---QHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l~---q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
..++..|+.+-..+..++..+. +....+..+=..|++++..|..++..+.+-+.
T Consensus 46 ~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 46 QFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443321 12233444555566666666666665555554
No 361
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=56.86 E-value=63 Score=22.31 Aligned_cols=37 Identities=8% Similarity=0.210 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 77 INIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 77 l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
+..+.+....++.-+..+..++..+..+|..+.+...
T Consensus 15 l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 15 LDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666677777777777776666553
No 362
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.76 E-value=1.3e+02 Score=29.52 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
..+..|+..|...+..+.-.+..|..
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k 360 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSK 360 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444444433
No 363
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=56.74 E-value=30 Score=28.95 Aligned_cols=31 Identities=13% Similarity=0.310 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLR 67 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~ 67 (172)
+..|.+|...++ -+..++++.+|+-++..|+
T Consensus 89 Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~ 119 (181)
T KOG3335|consen 89 EYWRQARKERKK------EEKRKQEIMELRLKVEKLE 119 (181)
T ss_pred hhHHhhhcchhh------HHHHHHHHHHHHHHHHHHH
Confidence 456666666555 3445556666666666554
No 364
>PRK10722 hypothetical protein; Provisional
Probab=56.74 E-value=50 Score=28.90 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 81 TQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 81 ~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
..++..+..++..|+.++..+++||..|.+|=.-+.
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLS 210 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDIERQLS 210 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466777788899999999999999999999988774
No 365
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.65 E-value=66 Score=30.90 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044691 93 VLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il~ 113 (172)
.|++++.++..++.....-+.
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544444444443
No 366
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=56.03 E-value=35 Score=30.07 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
-.+.|+.++..|+.+|..|+.+++.+.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~ 59 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQ 59 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666655555554443
No 367
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.80 E-value=1.4e+02 Score=27.37 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIA------------TQHYMNIESENS-VLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l------------~q~~~~le~EN~-~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
.+++.++..|+.+-..+..++..+ ..+...+..+.. .+..++.+++.++..+..-+..++.
T Consensus 239 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 239 ATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433 334444443333 5677777788888888777766654
No 368
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.45 E-value=1.2e+02 Score=29.11 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044691 90 ENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 90 EN~~LRaq~~eL~~rL~~l~~i 111 (172)
+-.+||+++..|.++|..=+++
T Consensus 412 ~EE~Lr~Kldtll~~ln~Pnq~ 433 (508)
T KOG3091|consen 412 DEEELRAKLDTLLAQLNAPNQL 433 (508)
T ss_pred cHHHHHHHHHHHHHHhcChHHH
Confidence 3344444444444444433333
No 369
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=55.28 E-value=1.3e+02 Score=25.53 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 49 RMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIE---SENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 49 R~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le---~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
=.+-++|-++++.--..|..-|.....+++...++...+. .+=..|+.|+..|...|.+||.|-..
T Consensus 129 ~~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~kLa~NL~sLN~VYg~ 197 (202)
T TIGR03513 129 YAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEMEKMAANLTSLNEVYGG 197 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444588888888888888888888888887777665543 44566899999999999999988644
No 370
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=55.13 E-value=1.1e+02 Score=25.46 Aligned_cols=55 Identities=15% Similarity=0.299 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+|+.++.....+-..+...+.....++..+..--..++.++.+.+.++..++..+
T Consensus 82 eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 82 ELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444455555555555554444
No 371
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=55.01 E-value=94 Score=31.26 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+.+.+|..++..+..-|..+..++......+..++..-..+.+++..|..++..|..-|..-.
T Consensus 631 ~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er 693 (769)
T PF05911_consen 631 QKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKER 693 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555566666666666666666666666666677777777666665443
No 372
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=54.92 E-value=84 Score=23.17 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
+...+.+|..--..|..+...+..++..|...|...|.++.+
T Consensus 31 ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444455556555555443
No 373
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=54.89 E-value=94 Score=23.78 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 044691 89 SENSVLRAQLGELTHR 104 (172)
Q Consensus 89 ~EN~~LRaq~~eL~~r 104 (172)
.+...++.++..|+..
T Consensus 66 ~e~~~~~~~~~~l~~~ 81 (132)
T PF07926_consen 66 EELQELQQEINELKAE 81 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 374
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=54.73 E-value=80 Score=22.93 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 81 TQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 81 ~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
...+..-..|...|..-+..|+.+|....++-..++
T Consensus 11 ~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq 46 (76)
T PF11544_consen 11 KKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQ 46 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566666666666666665555554443
No 375
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.72 E-value=1.1e+02 Score=24.57 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 88 ESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 88 e~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
..++..+..++.+|..+|...+.-++.+
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~L 180 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEAL 180 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666555555444
No 376
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=54.57 E-value=1.4e+02 Score=29.16 Aligned_cols=50 Identities=18% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIES-ENSVLRAQLGEL 101 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~-EN~~LRaq~~eL 101 (172)
-++.+.++..++..|+.+-.++..+...|++.|..+.. .+..|-+++.-|
T Consensus 376 ~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~L 426 (656)
T PRK06975 376 AQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQM 426 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHH
Confidence 34455666677777777777777777777777765542 255555555544
No 377
>PRK14148 heat shock protein GrpE; Provisional
Probab=54.06 E-value=1.3e+02 Score=25.17 Aligned_cols=38 Identities=11% Similarity=0.154 Sum_probs=17.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
.++..|+.+...|..++..++.++..+.+|..-+|.++
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~ 77 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRA 77 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445555544444444433
No 378
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=54.00 E-value=52 Score=29.61 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 89 SENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 89 ~EN~~LRaq~~eL~~rL~~l 108 (172)
.+...++.++..+..++..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (389)
T PRK03992 29 AENEKLERELERLKSELEKL 48 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444433
No 379
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=53.68 E-value=3e+02 Score=29.14 Aligned_cols=99 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccccCCCChhhhHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 5 SGTSSGGSSSLMLQNSGSEESLQALMDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 5 ~g~~~~~~~~~~~~~sgse~d~~~~~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
|||||| +--|++.-+..-++|.|=++.=++=-.|++ .+...+.++.-|+....-+...+..++...
T Consensus 641 sGG~s~---------~~wdek~~~~L~~~k~rl~eel~ei~~~~~-----e~~~v~~~i~~le~~~~~~~~~~~~~k~~l 706 (1141)
T KOG0018|consen 641 SGGSSG---------AKWDEKEVDQLKEKKERLLEELKEIQKRRK-----EVSSVESKIHGLEMRLKYSKLDLEQLKRSL 706 (1141)
T ss_pred cCCccC---------CCcCHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 85 MNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
...+.|-.....++.++.-++..+...|...+.
T Consensus 707 ~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~ 739 (1141)
T KOG0018|consen 707 EQNELELQRTESEIDEFGPEISEIKRKLQNREG 739 (1141)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
No 380
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=53.64 E-value=1.1e+02 Score=26.96 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
+...+..+...-..|+..-..-+.++...+.||+.|
T Consensus 181 ~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 181 TQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333344333
No 381
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.63 E-value=2e+02 Score=30.22 Aligned_cols=61 Identities=8% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQ-----IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~-----L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.+..+.+++.++..|..++.. +..+...+..++..+.++++.|..++..|..++..|..-+
T Consensus 1026 ~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1026 RENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556655555442 3444444444444444444444444444444444443333
No 382
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=53.58 E-value=82 Score=30.48 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL----RAQLGELTHRLHSLN 109 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L----Raq~~eL~~rL~~l~ 109 (172)
+++++.++.-++.|..++..+..++......|..+..+|..+ ++++..|..+|..|+
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~ln 546 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLN 546 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 567888888899999999999999988888888777666654 667777877777554
No 383
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=53.54 E-value=1.1e+02 Score=24.01 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=20.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQL-GELTHRLHSL 108 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~-~eL~~rL~~l 108 (172)
.++..|..........+..+...+..|...+..|+.+. .+++..+..|
T Consensus 41 ~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDL 89 (136)
T PF04871_consen 41 AEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDL 89 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 33333333333333344444445555555555555443 3333333333
No 384
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=53.40 E-value=74 Score=25.13 Aligned_cols=47 Identities=21% Similarity=0.242 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
+-++....-+..|+.||..|+..+-.+++-|..=...-..|+.++..
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34555556677788888888888887777776666666666666543
No 385
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=53.39 E-value=1.3e+02 Score=25.01 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 84 YMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 84 ~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+.....+-..+++++..+..+|..+...+..+
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 135 (322)
T TIGR01730 104 LDDAKAAVEAAQADLEAAKASLASAQLNLRYT 135 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33334444445555555555555555544443
No 386
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=53.37 E-value=88 Score=22.97 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 044691 59 LMAQVAQLR 67 (172)
Q Consensus 59 Le~qv~~L~ 67 (172)
|...+..|.
T Consensus 47 l~~~~~~l~ 55 (99)
T PF10046_consen 47 LEKNLEDLN 55 (99)
T ss_pred HHHHHHHHH
Confidence 333333333
No 387
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=53.34 E-value=1.1e+02 Score=27.67 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+++.+|..+...|...-..-...+..|.|.+.+.+.|...|.+.+..|..+|..+.+-++.+-
T Consensus 9 a~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLla 71 (389)
T KOG4687|consen 9 AEIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLA 71 (389)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 355566666666665555555566677788888888888888888888888888888777765
No 388
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=53.32 E-value=70 Score=29.20 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 88 ESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 88 e~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+.+|..|..+...++.++..+.+.++.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (398)
T PTZ00454 35 DIQEEYIKEEQKNLKRELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 389
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=53.21 E-value=58 Score=22.42 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSIN 78 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~ 78 (172)
+++|+.++..|+.|...+...+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655543
No 390
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=53.19 E-value=92 Score=23.14 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q 82 (172)
-+.+|..|+.+|..|..++..|..
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~ 70 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKK 70 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333333
No 391
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=52.85 E-value=1.1e+02 Score=29.70 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLG 99 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~ 99 (172)
+.+++|..++..+..+...+...+..+.........++..|.+++.
T Consensus 335 ~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 335 EQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666555555555555555554444
No 392
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.62 E-value=1.3e+02 Score=24.86 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
+.+..|+.++..++.....|..++..|+.++..+.+.-..|.++.....
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666665555554433
No 393
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=52.50 E-value=78 Score=30.87 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 93 VLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il 112 (172)
.|++++..+..+..-|.+|.
T Consensus 610 ~l~~~~~~~ekr~~RLkevf 629 (722)
T PF05557_consen 610 ELKAELASAEKRNQRLKEVF 629 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 394
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=52.49 E-value=1.2e+02 Score=24.14 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 60 MAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
...+......+..+..+|..+......-+.+-..|+.+.......+..-+..|+.+.
T Consensus 32 ~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~ 88 (135)
T TIGR03495 32 NRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLK 88 (135)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555666666555555556666676666666666665555555553
No 395
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=52.32 E-value=60 Score=25.26 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.++..++..+..|..++=.+-.....+..-+..|..+-.+|..+|..|...+
T Consensus 72 ~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 72 ARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQL 123 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3333334344443333333333333333333334444444444444444433
No 396
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=52.27 E-value=83 Score=29.54 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL 105 (172)
+...+..+-..|++|+.+++.++
T Consensus 315 qV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 315 LIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445555555544444
No 397
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.24 E-value=89 Score=27.34 Aligned_cols=30 Identities=13% Similarity=0.282 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNI 87 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~l 87 (172)
+|..++..++++-.+|..++..++......
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~ 83 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSV 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 398
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=52.16 E-value=1.4e+02 Score=24.84 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRK 68 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~ 68 (172)
+..++..+..++..|..
T Consensus 94 ~~~el~k~~~~l~~L~~ 110 (194)
T PF15619_consen 94 KDEELLKTKDELKHLKK 110 (194)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555554443
No 399
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=52.14 E-value=22 Score=32.68 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYM 85 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~ 85 (172)
.-.|..+-..|++||..|+.++..|+....
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667777777777777777777755544
No 400
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=52.04 E-value=2.2e+02 Score=27.07 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 42 RESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 42 RESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
|+.++.-+.--++.+..-...+.++.++-+.|..++..+..++..++++-..|-++-.+|+.-...|..-...+.
T Consensus 118 ~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~ 192 (499)
T COG4372 118 REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLK 192 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 401
>PLN03188 kinesin-12 family protein; Provisional
Probab=51.95 E-value=1.4e+02 Score=31.83 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHH-----------hHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRK-----------DNHQIITSINIA------------------------TQHYMNIESENSVLRAQ 97 (172)
Q Consensus 53 q~~leeLe~qv~~L~~-----------EN~~L~~~l~~l------------------------~q~~~~le~EN~~LRaq 97 (172)
-+.+..|.++++.|+. ||..|+.++..+ ++++..++.||..|..+
T Consensus 1154 ~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~ 1233 (1320)
T PLN03188 1154 SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQ 1233 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544 477777776654 46667788999999999
Q ss_pred HHHHHHHHH
Q 044691 98 LGELTHRLH 106 (172)
Q Consensus 98 ~~eL~~rL~ 106 (172)
+..|..+-.
T Consensus 1234 ~~klkrkh~ 1242 (1320)
T PLN03188 1234 IDKLKRKHE 1242 (1320)
T ss_pred HHHHHHHHH
Confidence 999998874
No 402
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=51.79 E-value=1e+02 Score=29.26 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
.|+.+.+.+...+..+.....++..++..+..++..|...-..|+.+++.
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666666666666666666654
No 403
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.66 E-value=45 Score=24.23 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 044691 87 IESENSVLRAQLGELT 102 (172)
Q Consensus 87 le~EN~~LRaq~~eL~ 102 (172)
+..+...|+.+...|.
T Consensus 73 l~~~i~~l~~ke~~l~ 88 (100)
T PF01486_consen 73 LMEQIEELKKKERELE 88 (100)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 404
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=51.65 E-value=13 Score=35.34 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 044691 57 DDLMAQVAQL 66 (172)
Q Consensus 57 eeLe~qv~~L 66 (172)
++|++|+++|
T Consensus 34 e~L~kql~~L 43 (489)
T PF11853_consen 34 EALKKQLEEL 43 (489)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 405
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=51.53 E-value=1.4e+02 Score=24.93 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 47 RSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 47 RSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.+-.+=-+..+.++.++..|.........+...+...+..|+.++..|..++.....+...+..-|
T Consensus 162 ~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 162 ASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444566666666666666666666666666666666666666666666666666555555
No 406
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=51.50 E-value=53 Score=29.82 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=7.2
Q ss_pred HHHHhHHHHHHHHHHH
Q 044691 65 QLRKDNHQIITSINIA 80 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l 80 (172)
.|..||++|+.++..|
T Consensus 61 ~L~~EN~~Lk~Ena~L 76 (337)
T PRK14872 61 VLETENFLLKERIALL 76 (337)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 407
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=51.49 E-value=1e+02 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRA 96 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRa 96 (172)
|..++..|.+.-..|...+..+.+++..+..++..+-.
T Consensus 99 l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 99 LKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555554433
No 408
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=51.40 E-value=8.3 Score=28.77 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
..+...+..|..+|..|+.++.+|..+|..+...
T Consensus 28 ~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~ 61 (131)
T PF05103_consen 28 DELAEELERLQRENAELKEEIEELQAQLEELREE 61 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCCT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 3344444555555555555555555555544433
No 409
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=51.37 E-value=5 Score=34.75 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
-+..+++...++.+|+.-...|..++..|++....|.+||..|
T Consensus 120 dKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 120 DKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp -------------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777776666666655555554444455555554
No 410
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=51.34 E-value=31 Score=23.26 Aligned_cols=26 Identities=8% Similarity=0.137 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
-.....++..|+.||..|..++..++
T Consensus 24 ~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 24 RSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566788888889999988887654
No 411
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=51.33 E-value=1.1e+02 Score=23.49 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
|..+...|-..|-.+..++..++.++...-.+=..|..+..++..++.
T Consensus 39 l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 39 LLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444333333344444444444444444444444443333
No 412
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=51.29 E-value=38 Score=26.37 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQI 73 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L 73 (172)
|..|..|+.++|+.+ .++.+++|+.++..|+.+...+
T Consensus 95 E~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 95 EYWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554443 3345666666666666555444
No 413
>PLN02320 seryl-tRNA synthetase
Probab=51.18 E-value=2.3e+02 Score=27.14 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYM---------NIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~---------~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
.+..|..+...+..+-..|+.+.+.+..++. .+..+=..|+.++.+|...+..+.+
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~ 158 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTD 158 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444545555555555555555544443 3333444444445555444444443
No 414
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=51.18 E-value=1.6e+02 Score=28.13 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQL--------------RKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L--------------~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
.=|..|-++++.++..- ..+.+.+..++..|.++|..---||..|-..+.+-++-|+
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLR 459 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALR 459 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888776532 3466778889999999999998999999887777665554
No 415
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=51.13 E-value=2.2e+02 Score=27.63 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=40.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 39 ISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIA--------TQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 39 lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l--------~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
...++++.+...=-..++.+|..++...+.+....+.+...+ .+++..+..+-...+++......++..+..
T Consensus 186 ~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~ 265 (754)
T TIGR01005 186 AAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKK 265 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555566666666666665555555443331 244555555555555666666666666666
Q ss_pred HHH
Q 044691 111 IIS 113 (172)
Q Consensus 111 il~ 113 (172)
.+.
T Consensus 266 ~l~ 268 (754)
T TIGR01005 266 ALQ 268 (754)
T ss_pred HHh
Confidence 554
No 416
>PLN02678 seryl-tRNA synthetase
Probab=51.00 E-value=1.3e+02 Score=28.21 Aligned_cols=63 Identities=11% Similarity=0.087 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIE---SENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le---~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
..+-.|..+...|..+-..|+.+.+.+..++..+. .+-..|.+++.+|..++..++..+..++
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666665422 1223566666667777777666666654
No 417
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=50.84 E-value=1.1e+02 Score=26.22 Aligned_cols=20 Identities=15% Similarity=-0.051 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhcCCCCC
Q 044691 104 RLHSLNEIISFLDASNNNDD 123 (172)
Q Consensus 104 rL~~l~~il~~~~~~~g~~~ 123 (172)
.|-.+.-|+--..-.+|+++
T Consensus 260 ~LTvvt~IflP~t~IaGiyG 279 (318)
T TIGR00383 260 ILTVVSTIFIPLTFIAGIYG 279 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455667665
No 418
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=50.82 E-value=1e+02 Score=23.00 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
.+.+...+.+....|..|...+....+........+..++.+..+.+..
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ 82 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRES 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666777777777766666666666677777766655443
No 419
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=50.60 E-value=2.4e+02 Score=27.16 Aligned_cols=38 Identities=11% Similarity=0.194 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRA 96 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRa 96 (172)
|..++..++.+...+..++..+.+++..+..+-..|+.
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344433443333333333333
No 420
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=50.60 E-value=36 Score=22.51 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 92 SVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 92 ~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
..||.|+..|..+|+.|...+...+.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKK 27 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKK 27 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888888888888888888876654
No 421
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=50.52 E-value=29 Score=29.17 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=39.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 67 RKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 67 ~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
+..+.+|......|+.+|..|..+|..|..++.+|...+..+...+..
T Consensus 104 RwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 104 RWKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred cccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 345566778888888999999999999999999999888887777766
No 422
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=50.45 E-value=1.6e+02 Score=24.96 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044691 82 QHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDAS 118 (172)
Q Consensus 82 q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~ 118 (172)
.+-.....|-..|..+-...+.+|..|...|..++..
T Consensus 147 ~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 147 ARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666777777778888888999888888753
No 423
>PF08334 T2SG: Type II secretion system (T2SS), protein G; InterPro: IPR013545 The general secretion pathway, or type II pullulanase-like machinery, is responsible for the transport of proteins from the periplasm across the outer membrane in Gram-negative bacteria [, ]. This entry includes protein G (e.g. P45773 from SWISSPROT, Q00514 from SWISSPROT) involved in this pathway. The PulG protein (P15746 from SWISSPROT) is thought to be anchored in the inner membrane with its C terminus directed towards the periplasm []. Together with other members of the secretion machinery, it is thought to assemble into a pilus-like structure that may function as a dynamic mechanism to push secreted proteins out of the cell. The polypeptide is organised into a long N-terminal alpha-helix followed by a loop region that separates it from a C-terminal anti-parallel beta-sheet []. ; PDB: 1T92_A 3G20_B 3GN9_B 2KEP_A 3FU1_B.
Probab=50.32 E-value=54 Score=23.98 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044691 93 VLRAQLGELTHRLHSLNEIISFLDASNNNDDD 124 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il~~~~~~~g~~~~ 124 (172)
.=+++.......|+.|...|+....-.|.++.
T Consensus 6 ~~~ak~~~a~~~l~~i~~Ale~Y~~d~G~yP~ 37 (108)
T PF08334_consen 6 IDKAKEARAKADLRTIKTALEMYYLDNGRYPS 37 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcC
Confidence 34566666777777788888777666676653
No 424
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=50.22 E-value=1.8e+02 Score=25.57 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=44.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
-+-+...+|..+..++..-++....++.+...|++++..|+.......++|
T Consensus 180 ~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 180 ALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
Confidence 344556799999999999999999999999999999999999888777766
No 425
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=50.17 E-value=1.6e+02 Score=25.10 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=17.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
.+-..|..+...+...+..+.......+.|...|+.++..-+..
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARED 118 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444445555555544444443
No 426
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=50.17 E-value=1.6e+02 Score=24.92 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHY--MNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~--~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
...+..|+.++..|+..-..+..+|..|...+ ..+..+-..|+.++...+.||.++.+
T Consensus 85 d~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 85 DGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 427
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=50.09 E-value=11 Score=38.12 Aligned_cols=65 Identities=20% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
+++.+++.+...|+.|...+.. ++. .++...++..|+.+++|...|..+|+..+.-|+.+....|
T Consensus 829 kql~eykvey~vLq~El~~~~~-~~~-~~~~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l~~~v~ 893 (948)
T KOG4436|consen 829 KQLAEYKVEYHVLQEELTTSSH-LED-LNRIAKLETTNSSLQAQNTDLLEQLQVAELTIQTLERYVE 893 (948)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-hhh-cccccccccchhhhHhhhhhhhhhhccccchhhHHHHHhh
Confidence 4555555555555555555444 322 2358899999999999999999999998888888876555
No 428
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=50.00 E-value=91 Score=24.65 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQ 97 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq 97 (172)
..+...+.-+..|+.+...=-.++..|++++..+...|..|..+
T Consensus 87 sli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 87 SLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34555566666666666666666777777777777777766543
No 429
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=49.95 E-value=1.2e+02 Score=23.67 Aligned_cols=19 Identities=21% Similarity=0.532 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQII 74 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~ 74 (172)
+..+..++..|+..+..|.
T Consensus 57 ~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 57 LEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554444
No 430
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=49.82 E-value=1.3e+02 Score=29.38 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044691 82 QHYMNIESENSVLRAQL 98 (172)
Q Consensus 82 q~~~~le~EN~~LRaq~ 98 (172)
..+..|.+||..|++++
T Consensus 566 ~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 566 STLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445556666666555
No 431
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=49.77 E-value=71 Score=24.23 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+...+..+..+.....+||..|.++...|.+++..|++=.+.+
T Consensus 48 ~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i 90 (117)
T COG2919 48 GAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDGRDYI 90 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 3445556666667777777777777777777777776653333
No 432
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=49.52 E-value=5.5 Score=38.69 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
+|-+-+++|..+|..|+..|..+...+..+..++
T Consensus 322 kKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 322 KKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888887776666665444
No 433
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=49.42 E-value=90 Score=27.62 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
-|.+|+.+.+....=..+.-.-..|..|+.++-.++.++.....++..++++.
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Confidence 45666677776654333333334788999999999988888888888777664
No 434
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.41 E-value=1.3e+02 Score=23.65 Aligned_cols=44 Identities=5% Similarity=0.152 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 71 HQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 71 ~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
..|..+|..+..+..+...=....+.++.+++..+..+..-++.
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~ 107 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDS 107 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444333
No 435
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=49.35 E-value=2e+02 Score=25.84 Aligned_cols=48 Identities=13% Similarity=0.305 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
++|..+++.+..+-..|..++..+.++...+..+-..|-.++.+|..+
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~k 77 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEK 77 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444333333
No 436
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=49.25 E-value=2e+02 Score=30.22 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 46 RRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 46 RRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
...+...+..+++++.+....-.+...|...++.+.-+...+.+++..|+.+..+|
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del 465 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDEL 465 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555544555555555544444445544554444444443
No 437
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=49.14 E-value=87 Score=28.18 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044691 91 NSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 91 N~~LRaq~~eL~~rL~~l~~il 112 (172)
+..|..+...+...+..+.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~ 45 (389)
T PRK03992 24 LRDLEAENEKLERELERLKSEL 45 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 438
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=49.14 E-value=85 Score=26.81 Aligned_cols=49 Identities=20% Similarity=0.379 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 60 MAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
..++..++.|-.+|+.....-..+...| ..||+|+.++..++..|...+
T Consensus 48 ~eel~~~~~eEe~LKs~~q~K~~~aanL----~~lr~Ql~emee~~~~llrQL 96 (211)
T COG3167 48 LEELEELEAEEEELKSTYQQKAIQAANL----EALRAQLAEMEERFDILLRQL 96 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHHHHHHhC
Confidence 3444444555555555444333332222 357888888888877665443
No 439
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.53 E-value=1.3e+02 Score=23.53 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=31.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 37 RMISNRESARRSRMRKQKHLDDLMA-------QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 37 R~lsNRESARRSR~RKq~~leeLe~-------qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
+++..-+.+...-.+|+..++.|.. +|..|+.+...+...+..+...+..+ +..++.++...
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f 182 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRF 182 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4444556666666666665555542 45555555555555555554444433 33444444443
No 440
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=48.18 E-value=1.6e+02 Score=24.39 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASN 119 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~ 119 (172)
|..++..+.++...+..+|..|+.+..-....+..|-.|++......
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~rark~~ 155 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNRARRMA 155 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34577778888888888888888888888888888888888776543
No 441
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.14 E-value=1.3e+02 Score=25.82 Aligned_cols=53 Identities=23% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Q 044691 60 MAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH---SLNEIISFLD 116 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~---~l~~il~~~~ 116 (172)
+.+++.++..|..|..+++.+.+ ...+|..|-.++..|+..|- ++.+++..+.
T Consensus 44 e~ql~r~R~~~~~Le~~l~~L~~----~A~~N~~lf~r~~~lq~~Ll~a~sl~d~l~~v~ 99 (218)
T COG3159 44 ERQLARLRNRIRELEEELAALME----NARANERLFYRLHALQLDLLDARSLDDLLRRVD 99 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 34555566666666665554433 45678888777777777765 5555555443
No 442
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.10 E-value=2.3e+02 Score=26.34 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+..-+....+++..+..+-..|..++.+|..+|..|..-+..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444455555555555555444444433
No 443
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=48.04 E-value=1.7e+02 Score=24.73 Aligned_cols=63 Identities=14% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+..++.++.++..|..+-..|..+..........+...=.....+...|...+..+..-|..+
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 444
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=47.91 E-value=1.1e+02 Score=27.17 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
..+.+|-.+|.++...|..+|..|..-++
T Consensus 217 ~~~~ae~seLq~r~~~l~~~L~~L~~e~~ 245 (289)
T COG4985 217 QHYVAEKSELQKRLAQLQTELDALRAELE 245 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34556666666666666666666655544
No 445
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.52 E-value=2.4e+02 Score=26.24 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 044691 89 SENSVLRAQLGELTH 103 (172)
Q Consensus 89 ~EN~~LRaq~~eL~~ 103 (172)
.|-..|+.+++....
T Consensus 276 ~Ei~~LKqeLa~~EE 290 (395)
T PF10267_consen 276 NEIYNLKQELASMEE 290 (395)
T ss_pred HHHHHHHHHHHhHHH
Confidence 344455555544433
No 446
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=47.49 E-value=53 Score=25.24 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQLGEL 101 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL 101 (172)
..|+.||.-|+-++.-|
T Consensus 82 ~~LeEENNlLklKievL 98 (108)
T cd07429 82 QQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555554444
No 447
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.46 E-value=2e+02 Score=25.44 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
+.....++..+..+-.+...++..+..+.......-..|..+...|...+.++.+=++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444444444443333
No 448
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=47.28 E-value=26 Score=22.69 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=8.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 044691 35 RKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITS 76 (172)
Q Consensus 35 ~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~ 76 (172)
+++...|++=|+..-... ..+.+|+.++..|..||-.|+..
T Consensus 3 ~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~ 43 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLREL 43 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555555555443322 23455666666666666665544
No 449
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=47.03 E-value=1.3e+02 Score=23.99 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQII-----TSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~-----~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
..+|..|+.+|+.|...+. .+-..+++++.+++.|-..+.++...-+....
T Consensus 42 ~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 42 QRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp HHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555543 22333455555555555555555544443333
No 450
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=46.98 E-value=1.8e+02 Score=24.58 Aligned_cols=59 Identities=10% Similarity=0.205 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
.+..||.+|..++..-..+...+..-.++.-.+..+-..|+..+..|-+++..+-++|+
T Consensus 80 lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 80 LVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555554444433333322233334444444555555555555554444443
No 451
>PRK09546 zntB zinc transporter; Reviewed
Probab=46.69 E-value=1.9e+02 Score=25.01 Aligned_cols=8 Identities=0% Similarity=-0.450 Sum_probs=4.7
Q ss_pred hhcCCCCC
Q 044691 116 DASNNNDD 123 (172)
Q Consensus 116 ~~~~g~~~ 123 (172)
.-.+|+|+
T Consensus 278 T~IaGiyG 285 (324)
T PRK09546 278 TFLTGLFG 285 (324)
T ss_pred HHHHhhhc
Confidence 45567665
No 452
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=46.61 E-value=2.4e+02 Score=26.35 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 044691 46 RRSRMRKQKHLDDLMAQVAQL--RKDNHQIITSINIATQHYMNIESENSVLRAQL-------GELTHRLHSLNEIISFL 115 (172)
Q Consensus 46 RRSR~RKq~~leeLe~qv~~L--~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~-------~eL~~rL~~l~~il~~~ 115 (172)
.-.|+|=...+.|-...|+.| ++|...|...+..+++.|.+|..-|..|..+. .+|..-|+.+|.+|+..
T Consensus 320 ~~vr~~ltaemAd~~~~ik~llvrAEDaRl~~d~~~m~k~y~~l~~~n~~l~~~~~~R~~N~~~l~~~lk~vn~~iq~a 398 (431)
T PF14782_consen 320 NEVRQRLTAEMADHSNLIKSLLVRAEDARLMGDMKNMRKYYAELYDLNRDLINEYKIRCNNHEELLSSLKEVNQIIQKA 398 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666655 78999999999999999999999999996654 45777788888877655
No 453
>PRK14158 heat shock protein GrpE; Provisional
Probab=46.57 E-value=1.7e+02 Score=24.42 Aligned_cols=18 Identities=11% Similarity=-0.045 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIIT 75 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~ 75 (172)
+|..+.-.+.++...++.
T Consensus 58 el~d~~lR~~AefeN~Rk 75 (194)
T PRK14158 58 ANWDKYLRERADLENYRK 75 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 454
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=46.49 E-value=1.9e+02 Score=26.55 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKD------NHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 53 q~~leeLe~qv~~L~~E------N~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
+..++.|+..+..|... -......+..+.+.+..+..+-..|..++.+|...+...
T Consensus 347 ~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 347 KEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555441 234556677778888888888888999999888888877
No 455
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=46.45 E-value=1.2e+02 Score=22.33 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=21.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
....-|+..|.....+...+......+...-..|..+..+|...++.+
T Consensus 21 ~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~I 68 (99)
T PF10046_consen 21 EDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQI 68 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555544444444444444444444444444444433333
No 456
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=46.28 E-value=2.5e+02 Score=26.15 Aligned_cols=48 Identities=19% Similarity=0.085 Sum_probs=36.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
+..+..-...+..++..+......++.+-..|+.++.+|+.+|..+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 455666667777777777777888888888888888888888877754
No 457
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=46.10 E-value=4e+02 Score=28.41 Aligned_cols=16 Identities=0% Similarity=-0.006 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLR 67 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~ 67 (172)
-++++++++..+...+
T Consensus 880 a~~~le~ae~~l~~~~ 895 (1353)
T TIGR02680 880 QRARAARAESDAREAA 895 (1353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 458
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.84 E-value=2.1e+02 Score=25.13 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 044691 76 SINIATQHYMNIESENSVLRA-------QLGELTHRLHSLNEIIS 113 (172)
Q Consensus 76 ~l~~l~q~~~~le~EN~~LRa-------q~~eL~~rL~~l~~il~ 113 (172)
.+..++.++..++.+-..|+. ++..|+.++..|...+.
T Consensus 215 ~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~ 259 (362)
T TIGR01010 215 LISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQID 259 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHH
Confidence 344445555555555444432 12234444555555543
No 459
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.18 E-value=4e+02 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
+.+|+.++..+...+.+-......-.+.+..|..|-.+|..++..+...|..++.-++.
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~ 847 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISS 847 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444444444444444444444444444444444444433333
No 460
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=45.06 E-value=2.3e+02 Score=30.33 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 49 RMRKQKHLDDLM-AQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 49 R~RKq~~leeLe-~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+.+++-...+|. .+.+-++.+......++.....+...|+++|..|+.++..+.++...+....+.+..
T Consensus 474 i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~ 543 (1317)
T KOG0612|consen 474 IEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNS 543 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
No 461
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=45.01 E-value=2.5e+02 Score=29.29 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044691 92 SVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 92 ~~LRaq~~eL~~rL~~l~~il 112 (172)
..++.++.+++.++..|..+|
T Consensus 514 ~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 514 RQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444433
No 462
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=44.91 E-value=54 Score=25.64 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHhH
Q 044691 29 LMDQRKRKRMISNR 42 (172)
Q Consensus 29 ~~deRr~rR~lsNR 42 (172)
.||--|---|..=|
T Consensus 53 AMDLVKtHLmfAVR 66 (123)
T KOG4797|consen 53 AMDLVKTHLMFAVR 66 (123)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 463
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.86 E-value=2.7e+02 Score=26.76 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred hhhhHhhhHHHHHHHHHHhHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHH
Q 044691 23 EESLQALMDQRKRKRMISNRESARRSRMRKQ------------------------------------KHLDDLMAQVAQL 66 (172)
Q Consensus 23 e~d~~~~~deRr~rR~lsNRESARRSR~RKq------------------------------------~~leeLe~qv~~L 66 (172)
+.|.....++.|.-+++.|++|++--|-=-- ...+.+..+|..|
T Consensus 402 ~~DI~Kil~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdl 481 (521)
T KOG1937|consen 402 EQDIVKILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDL 481 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHH
Q ss_pred HHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 67 RKDNHQ-----IITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 67 ~~EN~~-----L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
+.+... ....+..+.+.|.++..+|..|..++..
T Consensus 482 E~qI~~E~~k~~l~slEkl~~Dyqairqen~~L~~~iR~ 520 (521)
T KOG1937|consen 482 ESQIYVEEQKQYLKSLEKLHQDYQAIRQENDQLFSEIRL 520 (521)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
No 464
>PRK12704 phosphodiesterase; Provisional
Probab=44.75 E-value=2.8e+02 Score=26.36 Aligned_cols=8 Identities=13% Similarity=-0.051 Sum_probs=4.0
Q ss_pred HHhhcCCC
Q 044691 114 FLDASNNN 121 (172)
Q Consensus 114 ~~~~~~g~ 121 (172)
.++..+|+
T Consensus 143 ~l~~~a~l 150 (520)
T PRK12704 143 ELERISGL 150 (520)
T ss_pred HHHHHhCC
Confidence 34555554
No 465
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.59 E-value=2.9e+02 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=7.3
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINI 79 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~ 79 (172)
.++..++.++..+..++..
T Consensus 67 ~~l~~~~~~~~~~~~~~~~ 85 (475)
T PRK10361 67 NEVRSLQSINTSLEADLRE 85 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 466
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=44.54 E-value=73 Score=23.88 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 87 IESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 87 le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
++.||..|+.++.+|.-....|...+.+..
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~~~ 105 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEYGR 105 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666666665554
No 467
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=44.42 E-value=46 Score=27.99 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 65 QLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
+|+.+-..|+..+..+......|..|+..|++++..+....+.
T Consensus 109 qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 109 QLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 5666666677777777777777777888888877777666665
No 468
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=44.27 E-value=59 Score=25.01 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQH 83 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~ 83 (172)
+..+|+.||.-|+-+++.|---
T Consensus 80 k~~~LeEENNlLklKievLLDM 101 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDM 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888887777766443
No 469
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=44.26 E-value=47 Score=23.83 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
++.++.+..+|+.||..|.-++..+
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l 68 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATL 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566666666666666665555443
No 470
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=44.09 E-value=2e+02 Score=24.44 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
-++.+|+.+++.....-..|...+.....-...-+..+.+|..++..|...+..+..-+..++...+
T Consensus 81 s~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dp 147 (203)
T KOG3433|consen 81 SVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDP 147 (203)
T ss_pred HHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 3455666666666666666665555554444444444555555555555555555555544444433
No 471
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=44.09 E-value=65 Score=24.16 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLG 99 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~ 99 (172)
.+..|..||..|+.-+.
T Consensus 86 el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 86 LLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444556666655444
No 472
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=44.08 E-value=1e+02 Score=29.42 Aligned_cols=47 Identities=13% Similarity=0.326 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 71 HQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 71 ~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
..+...+..|..++..|+..|+.|++.+.+++.++-.+..++...+.
T Consensus 409 ~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~ 455 (514)
T KOG4370|consen 409 EELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQE 455 (514)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35666777788888889999999999999999999888888877754
No 473
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=43.95 E-value=2.3e+02 Score=25.07 Aligned_cols=45 Identities=20% Similarity=0.088 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNNND 122 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g~~ 122 (172)
..+......+.+..+.||.+...|.+++....+-+..++...+.+
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 334445556667777788888888888888777777776554443
No 474
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.91 E-value=2.1e+02 Score=24.67 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
.-+|..++.++.-+...+.+...+..++..++.+.... |..+++++..
T Consensus 159 ~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~R 206 (243)
T cd07666 159 DQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWER 206 (243)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34444444444444444555555555555555544443 5557766655
No 475
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=43.90 E-value=1.1e+02 Score=23.88 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 79 IATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 79 ~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.|..+...++..-..|..+...|..++..|.+.|...
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666666666666666443
No 476
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=43.88 E-value=3e+02 Score=26.81 Aligned_cols=60 Identities=8% Similarity=0.114 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
..+.+.+..+...+.+-..|--.+.....+....-.+|..+++....|..+++.+.+++.
T Consensus 49 ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~ 108 (604)
T KOG3564|consen 49 AELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLK 108 (604)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 344444555666666777777788888888888889999999999999999998888874
No 477
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=43.79 E-value=2.9e+02 Score=26.24 Aligned_cols=9 Identities=11% Similarity=-0.038 Sum_probs=4.8
Q ss_pred HHHhhcCCC
Q 044691 113 SFLDASNNN 121 (172)
Q Consensus 113 ~~~~~~~g~ 121 (172)
..++..+|+
T Consensus 136 ~~le~~a~l 144 (514)
T TIGR03319 136 EELERISGL 144 (514)
T ss_pred HHHHHHhCC
Confidence 345555665
No 478
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=43.57 E-value=2.5e+02 Score=28.11 Aligned_cols=63 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH-SLNEIISFLD 116 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~-~l~~il~~~~ 116 (172)
+-+++|+.+..+++.+...+......+++....++.+-..|+.+..++..++. ..+++++..+
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~ 583 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAK 583 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.54 E-value=3.1e+02 Score=27.30 Aligned_cols=66 Identities=9% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.|-..--++++.++..|+.+-..-..++..+.+....+...-..|..++.+..++-..|..=++.+
T Consensus 554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>PF15058 Speriolin_N: Speriolin N terminus
Probab=43.49 E-value=31 Score=29.30 Aligned_cols=27 Identities=11% Similarity=0.087 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 76 SINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 76 ~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
..+-+.++...|..||..||.++.-++
T Consensus 6 ~yeGlrhqierLv~ENeeLKKlVrLir 32 (200)
T PF15058_consen 6 NYEGLRHQIERLVRENEELKKLVRLIR 32 (200)
T ss_pred chHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 345667788889999999999987665
No 481
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=43.46 E-value=2.6e+02 Score=25.52 Aligned_cols=60 Identities=12% Similarity=0.318 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQ----IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~----L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
.++..|..+++.+-.|... |..+-..+..++..|+.+|..+-.+-..|....+...+++.
T Consensus 8 ~ri~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqell~ 71 (328)
T PF15369_consen 8 RRIANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQELLS 71 (328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655554444 34444455666777888888887777777766666655553
No 482
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=43.40 E-value=1.8e+02 Score=23.77 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
++..-..|=..+.+++..|..++..+..+..
T Consensus 119 qll~hr~e~ee~~~~l~~le~~~~~~e~~~~ 149 (175)
T PRK13182 119 QLLQHRREMEEMLERLQKLEARLKKLEPIYI 149 (175)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344457788888899999999988766553
No 483
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=43.28 E-value=1.5e+02 Score=22.78 Aligned_cols=56 Identities=9% Similarity=0.195 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
.++.|...|..+-.--..|..+...|......+..++..+-.-+..+...|+.+-+
T Consensus 34 l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGD 89 (121)
T PF06320_consen 34 LVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGD 89 (121)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555555544444455555555555555555555555555555555544433
No 484
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=43.15 E-value=1.1e+02 Score=21.13 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 65 QLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.+..|-...+..+-.+..++...+..|..|..++..|..++..+.
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555666666667777777778888888888888777776543
No 485
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=43.05 E-value=1.9e+02 Score=27.45 Aligned_cols=73 Identities=19% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 37 RMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSIN----------IATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 37 R~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~----------~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
|+ ++|+-|.-|-.-+-..+-+++.+|.+|+.+-..|.+.++ .+++++..+..+-..|+++.+.|+....
T Consensus 397 rk-kt~e~ag~s~Ktl~~~lv~~edeirrlkrdm~klkq~l~RN~gd~v~s~~lqe~L~ev~~~Lasl~aqea~ls~eq~ 475 (486)
T KOG2185|consen 397 RK-KTRENAGPSDKTLGAALVEYEDEIRRLKRDMLKLKQMLNRNKGDLVVSEALQERLKEVRKALASLLAQEAALSNEQV 475 (486)
T ss_pred hh-hhhhhcCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q ss_pred HHHH
Q 044691 107 SLNE 110 (172)
Q Consensus 107 ~l~~ 110 (172)
+-+.
T Consensus 476 sr~s 479 (486)
T KOG2185|consen 476 SRES 479 (486)
T ss_pred hhhh
No 486
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=43.04 E-value=1.5e+02 Score=25.13 Aligned_cols=64 Identities=19% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIA-----------------------TQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l-----------------------~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
.|++...+-|..++..|+.+...|+..+..+ ......+..+-..|++++..++.+..
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e 155 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRRE 155 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHH
Q ss_pred HHHHHHH
Q 044691 107 SLNEIIS 113 (172)
Q Consensus 107 ~l~~il~ 113 (172)
....-++
T Consensus 156 ~q~~~Fe 162 (202)
T PF06818_consen 156 EQRSSFE 162 (202)
T ss_pred HHHHHHH
No 487
>PF14645 Chibby: Chibby family
Probab=42.92 E-value=1.4e+02 Score=22.91 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
.......|+.+|++|..+++.|+-++.-|..=..+-.++..-+..+|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 488
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=42.88 E-value=2.1e+02 Score=24.28 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------------------
Q 044691 33 RKRKRMISNRESARRSRMRKQK----HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESE------------------ 90 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~----~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~E------------------ 90 (172)
||.||-...+.++=.-+-+=-+ ++...-.+|..|+..|+.|...+..|...|--|..+
T Consensus 23 ~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryt 102 (195)
T PF10226_consen 23 RRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYT 102 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 91 NSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 91 N~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
-.+++.++.....+|+.|..-.+.+
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L 127 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEEL 127 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=42.86 E-value=1.3e+02 Score=26.93 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044691 59 LMAQVAQLRKDNHQI-----ITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDAS 118 (172)
Q Consensus 59 Le~qv~~L~~EN~~L-----~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~ 118 (172)
|.+++..|..||.+| ..+|..|.-.+.--...|..||..-.+|-+-+..|.+-++.++.+
T Consensus 215 LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsT 279 (330)
T KOG2991|consen 215 LMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQST 279 (330)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhh
No 490
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=42.79 E-value=1.6e+02 Score=22.93 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
|.=|..+-...+.+-..-.-+-..++.++..|+.|+..++.-...|..|++.|+-.+.
T Consensus 6 l~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=42.74 E-value=1.6e+02 Score=23.05 Aligned_cols=59 Identities=19% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSIN-----IATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~-----~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
.+.+..++.++.+|+.+-..+..++. ....--..++.|-+.+..+...|..++..+..+
T Consensus 26 ~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~~L 89 (131)
T PF11068_consen 26 QEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQKL 89 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 492
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=42.62 E-value=2.3e+02 Score=25.77 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNN 120 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g 120 (172)
|.+.+..+|++|-++|........++..++..--...-..+..-+.+|+.+..-+...+....
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~ 63 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLS 63 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
No 493
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=42.61 E-value=1.5e+02 Score=22.59 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
++-+-+=.++...|..+...-...+..+.+....|.--|..|-.++..|...|.
T Consensus 18 KKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 18 KKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=42.13 E-value=1.6e+02 Score=28.88 Aligned_cols=66 Identities=8% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 50 MRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 50 ~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.++-.++.+.......+...+..|..+-..|..+|..+..+|..++.--..|..+.+.+..+|..+
T Consensus 434 ~~rn~rm~~i~~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~llgqi 499 (707)
T KOG0957|consen 434 TKRNERMSGISSFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKSSQKHLVERFSANEELLGQI 499 (707)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHhh
No 495
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=41.68 E-value=2.4e+02 Score=24.61 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCchhh
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNNNDDDENNGGAAA 132 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g~~~~~~~~~~~~ 132 (172)
+.++.++...+.++-.....+...++.+..-+..+. -.+..+.-..|-.+.-++--..-.+|+|+ ||
T Consensus 219 ~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~i------s~~~N~imk~LTi~s~iflPpTlIagiyG-MN------ 285 (322)
T COG0598 219 REYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLI------NNNQNEIMKILTIVSTIFLPPTLITGFYG-MN------ 285 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHcccc-cC------
Q ss_pred hhhhhhcccCCCCCCCCCCccCcCCC
Q 044691 133 AIFEATSMINEPAFDNFMNPLNLSYL 158 (172)
Q Consensus 133 ~~~~~~~~~~~~~~d~~~~p~~~~~~ 158 (172)
++.|| .-=|...||
T Consensus 286 --------f~~mP----el~~~~Gy~ 299 (322)
T COG0598 286 --------FKGMP----ELDWPYGYP 299 (322)
T ss_pred --------CCCCc----CCCCcccHH
No 496
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=41.57 E-value=1.4e+02 Score=26.85 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 49 RMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 49 R~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
|.+..+.+.+|+.+...|..+|...+..+..+..++..+..-=.-|...+...-........++..+
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l~~~~~~~~~~~~~a~~L 169 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYLGLPHTKKRKQHELAELL 169 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCccchhhhHHHHHhC
No 497
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.56 E-value=3.7e+02 Score=26.77 Aligned_cols=87 Identities=18% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDD----LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT---- 102 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~lee----Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~---- 102 (172)
|-|+.|--+-|-.+-+.+=.++-..+.+ +|.+--.|+.|...++-+-..+-+.|..|+.||-.|..++..|+
T Consensus 115 eLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQV 194 (772)
T KOG0999|consen 115 ELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQV 194 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhh
Q ss_pred ------HHHHHHHHHHHHHhh
Q 044691 103 ------HRLHSLNEIISFLDA 117 (172)
Q Consensus 103 ------~rL~~l~~il~~~~~ 117 (172)
+.++-|.+-+..++.
T Consensus 195 EyEglkheikRleEe~elln~ 215 (772)
T KOG0999|consen 195 EYEGLKHEIKRLEEETELLNS 215 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
No 498
>PRK14154 heat shock protein GrpE; Provisional
Probab=41.53 E-value=2.2e+02 Score=24.17 Aligned_cols=56 Identities=11% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhh
Q 044691 62 QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH------SLNEIISFLDA 117 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~------~l~~il~~~~~ 117 (172)
.+..|+.+...|..++..++.+|..+.+|-.-+|.+...-...+. .+.++|.++..
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDn 114 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADS 114 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
No 499
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=41.39 E-value=3.2e+02 Score=25.97 Aligned_cols=71 Identities=23% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 45 ARRSRMRKQKHLDDLMA-----QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 45 ARRSR~RKq~~leeLe~-----qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
|-+-+..-+++++.|+. +++++..|-..+..+-..+.++...++.++..|--++.+++.+-..+++.....
T Consensus 155 ~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~ 230 (447)
T KOG2751|consen 155 AEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQY 230 (447)
T ss_pred HHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=41.29 E-value=2.8e+02 Score=27.69 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH-SLNEIISFLD 116 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~-~l~~il~~~~ 116 (172)
.-+++|+.+...++.+...+......+.+....++.+-..|+++-.++..+++ ..++++..+.
T Consensus 515 ~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~ 578 (771)
T TIGR01069 515 VLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALK 578 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!