Query 044691
Match_columns 172
No_of_seqs 194 out of 741
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 1.5E-15 5.1E-20 102.0 6.1 52 33-84 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.4 9.8E-13 3.3E-17 90.0 8.9 51 32-82 1-51 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.3 1.3E-11 4.3E-16 83.7 8.7 49 33-81 1-49 (61)
4 2dgc_A Protein (GCN4); basic d 99.3 5.8E-12 2E-16 86.5 6.6 46 39-84 15-60 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 3.5E-11 1.2E-15 81.9 7.3 49 34-82 2-50 (62)
6 1gd2_E Transcription factor PA 99.1 1.7E-10 5.7E-15 81.0 8.2 60 34-93 9-68 (70)
7 1ci6_A Transcription factor AT 99.0 1.1E-09 3.9E-14 74.9 7.4 48 33-80 2-49 (63)
8 1gu4_A CAAT/enhancer binding p 98.7 1.2E-07 4.1E-12 67.6 9.1 49 31-79 13-61 (78)
9 1hjb_A Ccaat/enhancer binding 98.7 1.4E-07 4.9E-12 68.5 9.4 62 31-113 13-74 (87)
10 3a5t_A Transcription factor MA 98.5 2.8E-09 9.7E-14 80.2 -3.2 70 29-112 33-102 (107)
11 2wt7_B Transcription factor MA 98.1 2.7E-05 9.3E-10 56.9 10.1 65 29-107 23-87 (90)
12 2oqq_A Transcription factor HY 97.0 0.0019 6.6E-08 40.9 6.0 39 53-98 2-40 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.7 0.018 6.1E-07 41.2 9.8 57 56-112 22-78 (81)
14 1deb_A APC protein, adenomatou 96.2 0.022 7.6E-07 37.5 7.0 48 56-103 5-52 (54)
15 1skn_P DNA-binding domain of S 96.1 0.0035 1.2E-07 45.7 3.0 32 30-61 59-90 (92)
16 3hnw_A Uncharacterized protein 96.1 0.082 2.8E-06 40.7 10.9 63 51-113 72-134 (138)
17 2jee_A YIIU; FTSZ, septum, coi 95.8 0.15 5.1E-06 36.3 10.4 60 54-113 6-65 (81)
18 2w6a_A ARF GTPase-activating p 95.4 0.08 2.7E-06 35.9 7.3 41 56-96 22-62 (63)
19 1hjb_A Ccaat/enhancer binding 95.1 0.067 2.3E-06 38.5 6.7 54 32-85 18-74 (87)
20 1ci6_A Transcription factor AT 94.9 0.096 3.3E-06 35.2 6.7 40 74-113 22-61 (63)
21 2wt7_A Proto-oncogene protein 94.6 0.13 4.3E-06 34.4 6.7 40 75-114 23-62 (63)
22 1t2k_D Cyclic-AMP-dependent tr 94.4 0.16 5.4E-06 33.6 6.7 38 75-112 22-59 (61)
23 1gu4_A CAAT/enhancer binding p 94.3 0.34 1.2E-05 34.1 8.5 37 76-112 37-73 (78)
24 1go4_E MAD1 (mitotic arrest de 93.5 0.26 9.1E-06 36.3 7.0 30 55-84 13-42 (100)
25 3hnw_A Uncharacterized protein 93.4 1.1 3.8E-05 34.3 10.8 58 59-116 73-130 (138)
26 3he5_A Synzip1; heterodimeric 93.4 0.4 1.4E-05 30.4 6.8 44 55-98 4-47 (49)
27 3s9g_A Protein hexim1; cyclin 93.2 0.6 2.1E-05 34.5 8.5 42 56-97 39-87 (104)
28 2eqb_B RAB guanine nucleotide 92.4 1.1 3.8E-05 32.8 9.0 52 54-105 12-63 (97)
29 1jnm_A Proto-oncogene C-JUN; B 92.4 0.18 6.2E-06 33.4 4.4 40 74-113 21-60 (62)
30 2dfs_A Myosin-5A; myosin-V, in 92.3 1.9 6.6E-05 42.6 13.3 57 53-109 990-1050(1080)
31 3vmx_A Voltage-gated hydrogen 92.2 0.77 2.6E-05 29.7 7.0 39 60-98 3-41 (48)
32 2c9l_Y EB1, zebra, BZLF1 trans 92.2 0.96 3.3E-05 30.2 7.6 24 38-61 6-29 (63)
33 2xdj_A Uncharacterized protein 92.1 1.3 4.5E-05 31.3 8.9 24 83-106 28-51 (83)
34 3a2a_A Voltage-gated hydrogen 91.9 0.53 1.8E-05 31.4 6.1 40 60-99 10-49 (58)
35 3oja_B Anopheles plasmodium-re 91.7 1.8 6.2E-05 38.4 11.4 59 53-111 508-566 (597)
36 1gd2_E Transcription factor PA 91.3 0.42 1.4E-05 33.0 5.4 38 71-108 32-69 (70)
37 1p9i_A Cortexillin I/GCN4 hybr 91.2 0.31 1.1E-05 28.3 3.9 23 83-105 7-29 (31)
38 2lw1_A ABC transporter ATP-bin 91.2 2 6.8E-05 30.1 9.0 61 52-112 20-86 (89)
39 3u1c_A Tropomyosin alpha-1 cha 90.3 3.8 0.00013 29.5 10.5 55 52-106 21-75 (101)
40 2zxx_A Geminin; coiled-coil, c 90.2 0.83 2.8E-05 32.3 6.2 44 68-115 34-77 (79)
41 3cve_A Homer protein homolog 1 90.2 2.4 8.2E-05 29.4 8.4 47 57-103 3-49 (72)
42 2v71_A Nuclear distribution pr 90.1 2.7 9.3E-05 34.0 9.9 61 56-116 90-150 (189)
43 3iv1_A Tumor susceptibility ge 89.9 3.5 0.00012 29.0 9.2 61 52-112 16-76 (78)
44 2oxj_A Hybrid alpha/beta pepti 89.6 0.75 2.6E-05 27.7 4.7 26 55-80 2-27 (34)
45 3m48_A General control protein 89.6 0.45 1.5E-05 28.6 3.6 26 56-81 2-27 (33)
46 3efg_A Protein SLYX homolog; x 89.4 1.3 4.3E-05 30.9 6.6 48 55-109 15-62 (78)
47 1kd8_B GABH BLL, GCN4 acid bas 89.2 0.98 3.3E-05 27.5 5.0 28 55-82 2-29 (36)
48 3a7p_A Autophagy protein 16; c 89.0 5.1 0.00018 31.4 10.5 43 57-99 92-134 (152)
49 3mq7_A Bone marrow stromal ant 88.9 2.8 9.6E-05 31.7 8.6 49 57-105 60-108 (121)
50 3cvf_A Homer-3, homer protein 88.8 3.5 0.00012 29.0 8.6 49 56-104 8-56 (79)
51 1kd8_A GABH AIV, GCN4 acid bas 88.8 0.64 2.2E-05 28.3 4.0 28 55-82 2-29 (36)
52 4emc_A Monopolin complex subun 88.4 2.7 9.1E-05 34.2 8.7 60 53-112 12-71 (190)
53 3a7p_A Autophagy protein 16; c 88.2 8 0.00027 30.3 12.5 47 56-102 84-130 (152)
54 1wlq_A Geminin; coiled-coil; 2 88.2 5.4 0.00019 28.4 9.2 46 67-116 37-82 (83)
55 3oja_B Anopheles plasmodium-re 87.8 5.9 0.0002 35.1 11.5 58 58-115 506-563 (597)
56 2dgc_A Protein (GCN4); basic d 87.6 0.87 3E-05 30.5 4.6 33 74-106 29-61 (63)
57 3jsv_C NF-kappa-B essential mo 87.1 6.4 0.00022 28.6 9.2 77 40-116 9-88 (94)
58 1i84_S Smooth muscle myosin he 86.8 5.6 0.00019 39.3 11.7 24 83-106 914-937 (1184)
59 2kz5_A Transcription factor NF 86.7 0.046 1.6E-06 39.8 -2.4 23 32-54 65-87 (91)
60 3c3f_A Alpha/beta peptide with 86.6 1.5 5.2E-05 26.3 4.7 27 55-81 2-28 (34)
61 3m91_A Proteasome-associated A 86.3 4.2 0.00014 26.3 7.2 20 58-77 13-32 (51)
62 3u1c_A Tropomyosin alpha-1 cha 86.2 7.5 0.00026 27.9 12.4 62 48-109 38-99 (101)
63 3o0z_A RHO-associated protein 86.1 11 0.00039 29.9 11.2 41 58-98 38-78 (168)
64 1dip_A Delta-sleep-inducing pe 86.0 0.62 2.1E-05 32.8 3.2 28 69-96 16-43 (78)
65 3m91_A Proteasome-associated A 86.0 4.6 0.00016 26.1 7.2 37 79-115 13-49 (51)
66 3u59_A Tropomyosin beta chain; 85.6 7.9 0.00027 27.6 10.4 53 52-104 21-73 (101)
67 3s4r_A Vimentin; alpha-helix, 85.6 7.9 0.00027 27.5 9.6 22 61-82 23-44 (93)
68 3m9b_A Proteasome-associated A 85.5 0.99 3.4E-05 38.1 4.9 41 77-117 56-96 (251)
69 2v71_A Nuclear distribution pr 85.5 13 0.00044 30.0 14.2 47 60-106 87-133 (189)
70 2dfs_A Myosin-5A; myosin-V, in 84.9 16 0.00054 36.2 13.7 27 63-89 986-1012(1080)
71 3ol1_A Vimentin; structural ge 84.9 9.7 0.00033 28.0 10.8 16 101-116 88-103 (119)
72 3m9b_A Proteasome-associated A 84.7 1.8 6.2E-05 36.5 6.1 36 55-90 55-90 (251)
73 2v4h_A NF-kappa-B essential mo 84.7 10 0.00036 28.2 11.5 70 43-112 34-106 (110)
74 2yy0_A C-MYC-binding protein; 84.5 2.4 8.1E-05 27.5 5.3 14 62-75 20-33 (53)
75 3c3g_A Alpha/beta peptide with 84.4 2.2 7.7E-05 25.5 4.7 25 56-80 2-26 (33)
76 3efg_A Protein SLYX homolog; x 84.2 3.3 0.00011 28.8 6.4 52 66-117 12-63 (78)
77 1dh3_A Transcription factor CR 84.2 1.2 4.1E-05 29.0 3.8 31 75-105 22-52 (55)
78 3ra3_A P1C; coiled coil domain 84.0 2 6.9E-05 24.3 4.1 24 86-109 4-27 (28)
79 1fmh_A General control protein 83.7 2.3 7.8E-05 24.9 4.4 25 56-80 3-27 (33)
80 2yy0_A C-MYC-binding protein; 83.6 2.6 9.1E-05 27.3 5.3 28 83-110 20-47 (53)
81 2hy6_A General control protein 83.5 1.9 6.7E-05 25.9 4.2 27 55-81 2-28 (34)
82 1t6f_A Geminin; coiled-coil, c 83.2 2.7 9.2E-05 25.6 4.8 28 68-95 7-34 (37)
83 3bas_A Myosin heavy chain, str 83.1 9.8 0.00034 26.6 12.5 53 53-105 34-86 (89)
84 1i84_S Smooth muscle myosin he 82.8 11 0.00037 37.3 11.6 17 93-109 917-933 (1184)
85 2wq1_A General control protein 82.6 3 0.0001 24.9 4.7 26 56-81 2-27 (33)
86 4h22_A Leucine-rich repeat fli 82.5 6.6 0.00023 29.0 7.6 13 29-41 6-18 (103)
87 3a7o_A Autophagy protein 16; c 82.4 6.8 0.00023 27.2 7.2 49 55-103 26-74 (75)
88 3mq7_A Bone marrow stromal ant 82.1 9.5 0.00032 28.8 8.5 30 84-113 73-102 (121)
89 2bni_A General control protein 82.1 2 6.8E-05 25.8 3.8 26 55-80 2-27 (34)
90 3tnu_A Keratin, type I cytoske 82.0 13 0.00046 27.5 10.1 29 56-84 47-75 (131)
91 1uo4_A General control protein 81.6 2.1 7.3E-05 25.7 3.8 26 56-81 3-28 (34)
92 1ik9_A DNA repair protein XRCC 81.0 17 0.00057 29.5 10.4 39 57-95 135-173 (213)
93 1nkp_B MAX protein, MYC proto- 80.8 2.3 7.9E-05 29.2 4.5 27 85-111 50-76 (83)
94 3tnu_B Keratin, type II cytosk 80.5 15 0.00051 27.1 10.1 29 56-84 45-73 (129)
95 4etp_A Kinesin-like protein KA 80.4 7.4 0.00025 34.2 8.7 15 86-100 28-42 (403)
96 4emc_A Monopolin complex subun 79.6 6.5 0.00022 31.9 7.3 62 55-116 21-82 (190)
97 2oa5_A Hypothetical protein BQ 79.2 9.6 0.00033 28.4 7.6 27 53-79 7-33 (110)
98 2oqq_A Transcription factor HY 78.6 9.8 0.00034 23.8 6.4 32 80-111 8-39 (42)
99 2j5u_A MREC protein; bacterial 78.2 1.1 3.8E-05 37.1 2.5 7 158-164 99-105 (255)
100 2wvr_A Geminin; DNA replicatio 78.1 23 0.00079 29.0 10.2 45 68-116 115-159 (209)
101 2oxj_A Hybrid alpha/beta pepti 77.8 4.5 0.00015 24.3 4.4 29 77-105 3-31 (34)
102 1deb_A APC protein, adenomatou 77.8 11 0.00036 24.7 6.6 34 78-111 6-39 (54)
103 1uii_A Geminin; human, DNA rep 77.8 6.8 0.00023 27.9 6.1 31 68-98 46-76 (83)
104 2ocy_A RAB guanine nucleotide 77.8 11 0.00038 29.5 8.0 38 80-117 106-143 (154)
105 3s9g_A Protein hexim1; cyclin 77.6 13 0.00044 27.4 7.7 45 72-116 34-78 (104)
106 3u59_A Tropomyosin beta chain; 77.4 17 0.00057 25.8 11.9 57 52-108 42-98 (101)
107 3vkg_A Dynein heavy chain, cyt 77.3 13 0.00045 41.0 10.8 50 63-112 2030-2079(3245)
108 2wuj_A Septum site-determining 77.2 2.3 8E-05 27.7 3.4 25 80-104 32-56 (57)
109 1nkp_B MAX protein, MYC proto- 77.2 6.2 0.00021 27.0 5.8 29 79-107 51-79 (83)
110 3u06_A Protein claret segregat 77.1 8.4 0.00029 34.1 8.0 50 66-115 8-57 (412)
111 2v66_B Nuclear distribution pr 76.9 20 0.00069 26.5 10.6 60 56-115 37-96 (111)
112 2l5g_B Putative uncharacterize 76.8 10 0.00035 23.7 6.0 34 79-112 6-39 (42)
113 1ic2_A Tropomyosin alpha chain 76.8 15 0.00052 25.1 9.4 52 62-113 7-58 (81)
114 3he5_B Synzip2; heterodimeric 76.6 12 0.00041 23.8 6.8 30 80-109 15-44 (52)
115 1a93_B MAX protein, coiled coi 76.6 4.6 0.00016 24.3 4.2 20 81-100 13-32 (34)
116 2w83_C C-JUN-amino-terminal ki 76.3 17 0.00059 25.4 10.4 53 57-109 5-64 (77)
117 3m48_A General control protein 76.3 3.4 0.00012 24.7 3.5 27 78-104 3-29 (33)
118 1p9i_A Cortexillin I/GCN4 hybr 75.9 4.3 0.00015 23.4 3.8 25 57-81 2-26 (31)
119 1nlw_A MAD protein, MAX dimeri 75.4 6.5 0.00022 27.2 5.5 22 85-106 57-78 (80)
120 3ra3_A P1C; coiled coil domain 75.0 2.1 7.2E-05 24.2 2.3 24 64-87 3-26 (28)
121 1am9_A Srebp-1A, protein (ster 74.9 10 0.00036 26.0 6.5 72 37-109 6-77 (82)
122 3oja_A Leucine-rich immune mol 74.2 42 0.0015 29.0 12.7 33 77-109 437-469 (487)
123 2oto_A M protein; helical coil 74.2 23 0.00079 26.8 8.9 32 56-87 52-83 (155)
124 1go4_E MAD1 (mitotic arrest de 73.8 7 0.00024 28.6 5.5 31 75-105 12-42 (100)
125 2ve7_C Kinetochore protein NUF 73.6 2.1 7.3E-05 35.5 3.0 38 31-68 118-155 (250)
126 3oja_A Leucine-rich immune mol 73.2 39 0.0013 29.2 11.2 51 59-109 426-476 (487)
127 1gk6_A Vimentin; intermediate 72.9 17 0.00057 23.7 7.2 49 57-105 3-51 (59)
128 2r2v_A GCN4 leucine zipper; co 72.8 8.4 0.00029 23.1 4.7 26 55-80 2-27 (34)
129 1wle_A Seryl-tRNA synthetase; 72.7 29 0.001 31.5 10.6 27 86-112 120-146 (501)
130 3nmd_A CGMP dependent protein 72.6 11 0.00037 26.1 6.0 22 53-74 39-60 (72)
131 2wuj_A Septum site-determining 72.4 4.1 0.00014 26.5 3.6 30 54-83 27-56 (57)
132 4etp_A Kinesin-like protein KA 71.7 16 0.00055 32.0 8.4 42 53-94 9-50 (403)
133 2v66_B Nuclear distribution pr 71.0 29 0.001 25.7 13.9 34 61-94 35-68 (111)
134 3u06_A Protein claret segregat 70.6 18 0.00063 31.8 8.6 49 55-103 11-59 (412)
135 1dip_A Delta-sleep-inducing pe 70.6 5 0.00017 28.2 3.9 20 55-74 23-42 (78)
136 1nkp_A C-MYC, MYC proto-oncoge 70.4 11 0.00037 26.4 5.7 11 89-99 73-83 (88)
137 1am9_A Srebp-1A, protein (ster 70.4 7.7 0.00026 26.7 4.9 26 53-78 49-74 (82)
138 2i1j_A Moesin; FERM, coiled-co 70.3 3.9 0.00013 37.6 4.2 87 29-115 309-396 (575)
139 1nlw_A MAD protein, MAX dimeri 69.9 7 0.00024 27.0 4.6 15 55-69 48-62 (80)
140 2fxo_A Myosin heavy chain, car 69.9 30 0.001 25.5 14.5 61 56-116 64-124 (129)
141 3c3f_A Alpha/beta peptide with 69.8 9.3 0.00032 22.9 4.4 29 77-105 3-31 (34)
142 3mq9_A Bone marrow stromal ant 69.7 44 0.0015 28.7 10.7 22 92-113 446-467 (471)
143 3swf_A CGMP-gated cation chann 69.6 25 0.00086 24.4 7.8 48 57-107 3-50 (74)
144 3c3g_A Alpha/beta peptide with 68.9 10 0.00035 22.6 4.4 28 78-105 3-30 (33)
145 3he5_B Synzip2; heterodimeric 68.7 20 0.00067 22.8 6.2 36 59-94 8-43 (52)
146 3plt_A Sphingolipid long chain 68.5 31 0.0011 28.6 9.0 67 32-103 92-159 (234)
147 1lwu_C Fibrinogen gamma chain; 68.3 17 0.00057 31.4 7.6 10 96-105 40-49 (323)
148 1kd8_B GABH BLL, GCN4 acid bas 68.3 15 0.0005 22.3 5.1 28 79-106 5-32 (36)
149 3i00_A HIP-I, huntingtin-inter 68.2 34 0.0012 25.4 9.5 49 49-104 35-83 (120)
150 3bas_A Myosin heavy chain, str 67.7 28 0.00096 24.2 10.2 56 56-111 30-85 (89)
151 3cvf_A Homer-3, homer protein 67.4 22 0.00076 24.8 6.8 36 55-90 14-49 (79)
152 1ses_A Seryl-tRNA synthetase; 67.3 48 0.0016 29.1 10.5 29 85-113 67-95 (421)
153 1fmh_A General control protein 67.3 11 0.00037 22.0 4.2 25 80-104 6-30 (33)
154 3e98_A GAF domain of unknown f 66.2 30 0.001 28.4 8.4 56 56-115 67-125 (252)
155 4b4t_K 26S protease regulatory 66.1 13 0.00043 33.0 6.6 53 65-117 39-91 (428)
156 3q0x_A Centriole protein; cent 65.7 48 0.0016 27.3 9.6 25 88-112 191-215 (228)
157 3vkg_A Dynein heavy chain, cyt 65.5 37 0.0013 37.7 11.0 73 37-109 2018-2104(3245)
158 1wle_A Seryl-tRNA synthetase; 65.4 80 0.0027 28.6 13.4 77 40-116 48-143 (501)
159 2ve7_C Kinetochore protein NUF 65.1 7.4 0.00025 32.2 4.6 29 78-106 151-179 (250)
160 1joc_A EEA1, early endosomal a 64.8 25 0.00085 25.9 7.1 39 55-93 12-50 (125)
161 4dzn_A Coiled-coil peptide CC- 64.4 19 0.00064 21.0 5.1 23 59-81 7-29 (33)
162 2w83_C C-JUN-amino-terminal ki 64.4 34 0.0012 23.9 9.3 37 73-109 35-71 (77)
163 3qne_A Seryl-tRNA synthetase, 64.3 80 0.0027 28.6 11.6 30 85-114 74-103 (485)
164 2dq0_A Seryl-tRNA synthetase; 64.1 32 0.0011 30.6 8.8 30 86-115 73-102 (455)
165 1kd8_A GABH AIV, GCN4 acid bas 63.6 14 0.00047 22.4 4.3 27 80-106 6-32 (36)
166 3q8t_A Beclin-1; autophagy, AT 63.5 37 0.0013 24.1 12.5 64 52-115 23-86 (96)
167 3he5_A Synzip1; heterodimeric 63.1 25 0.00086 22.1 7.4 13 85-97 13-25 (49)
168 1lwu_C Fibrinogen gamma chain; 63.0 26 0.00088 30.2 7.8 35 81-115 18-52 (323)
169 3trt_A Vimentin; cytoskeleton, 62.7 31 0.0011 22.9 10.3 8 38-45 22-29 (77)
170 2dq0_A Seryl-tRNA synthetase; 62.2 85 0.0029 27.9 11.7 59 59-117 36-97 (455)
171 2ocy_A RAB guanine nucleotide 62.2 54 0.0018 25.5 14.5 44 59-102 49-92 (154)
172 1g6u_A Domain swapped dimer; d 61.6 22 0.00076 22.2 5.2 27 82-108 20-46 (48)
173 3o0z_A RHO-associated protein 61.2 59 0.002 25.7 13.8 66 37-109 73-138 (168)
174 3qne_A Seryl-tRNA synthetase, 61.2 44 0.0015 30.3 9.3 58 59-116 38-98 (485)
175 1gk7_A Vimentin; intermediate 60.9 14 0.00048 22.4 4.2 21 79-99 17-37 (39)
176 1nkp_A C-MYC, MYC proto-oncoge 60.6 33 0.0011 23.9 6.7 33 82-114 52-84 (88)
177 1wt6_A Myotonin-protein kinase 59.8 43 0.0015 23.6 10.2 57 41-100 14-70 (81)
178 2e7s_A RAB guanine nucleotide 59.3 31 0.001 26.4 6.8 48 57-104 35-82 (135)
179 3g20_A Type II secretion prote 59.3 26 0.0009 25.8 6.3 66 92-159 14-91 (123)
180 3w03_C DNA repair protein XRCC 59.2 16 0.00055 29.3 5.4 19 55-73 146-164 (184)
181 2xv5_A Lamin-A/C; structural p 59.2 40 0.0014 23.0 8.5 48 57-104 8-55 (74)
182 3ghg_A Fibrinogen alpha chain; 58.5 25 0.00087 32.6 7.2 43 72-114 114-156 (562)
183 3q8t_A Beclin-1; autophagy, AT 58.2 47 0.0016 23.5 12.7 46 59-104 23-68 (96)
184 3trt_A Vimentin; cytoskeleton, 58.2 38 0.0013 22.5 7.3 20 94-113 54-73 (77)
185 1zme_C Proline utilization tra 58.1 11 0.00039 24.0 3.7 25 53-77 43-67 (70)
186 2oto_A M protein; helical coil 57.7 58 0.002 24.5 11.1 29 77-105 52-80 (155)
187 1joc_A EEA1, early endosomal a 57.6 54 0.0018 24.0 9.0 23 84-106 13-35 (125)
188 2bni_A General control protein 56.9 14 0.00047 22.1 3.5 27 78-104 4-30 (34)
189 3he4_A Synzip6; heterodimeric 56.6 6.8 0.00023 25.3 2.2 22 87-108 29-50 (56)
190 1uo4_A General control protein 55.2 17 0.0006 21.7 3.7 26 78-103 4-29 (34)
191 3ra3_B P2F; coiled coil domain 54.9 11 0.00039 21.2 2.7 13 90-102 8-20 (28)
192 2hy6_A General control protein 54.6 26 0.00089 20.9 4.4 27 79-105 5-31 (34)
193 3m0d_C TNF receptor-associated 54.6 43 0.0015 22.0 9.1 58 52-109 4-61 (65)
194 2efr_A General control protein 54.4 73 0.0025 24.7 10.2 60 43-102 94-153 (155)
195 3na7_A HP0958; flagellar bioge 53.6 87 0.003 25.2 14.2 36 55-90 91-126 (256)
196 2xdj_A Uncharacterized protein 53.5 54 0.0018 22.8 9.4 34 56-89 22-55 (83)
197 1ses_A Seryl-tRNA synthetase; 53.1 44 0.0015 29.4 7.7 61 56-116 30-91 (421)
198 3q0x_A Centriole protein; cent 53.1 73 0.0025 26.2 8.6 30 55-84 179-208 (228)
199 1t92_A General secretion pathw 52.7 31 0.0011 25.4 5.7 30 95-124 6-35 (116)
200 1x8y_A Lamin A/C; structural p 52.3 55 0.0019 22.6 9.4 53 53-105 27-79 (86)
201 1deq_A Fibrinogen (alpha chain 52.3 1.2E+02 0.004 27.0 10.2 48 70-117 115-162 (390)
202 1jcd_A Major outer membrane li 52.2 44 0.0015 21.5 7.6 28 55-82 5-32 (52)
203 3tnu_B Keratin, type II cytosk 50.7 70 0.0024 23.3 10.3 36 76-111 76-111 (129)
204 3lay_A Zinc resistance-associa 50.5 50 0.0017 26.0 6.9 21 82-102 113-133 (175)
205 1uix_A RHO-associated kinase; 50.5 58 0.002 22.3 9.8 30 59-88 2-31 (71)
206 3swy_A Cyclic nucleotide-gated 49.9 46 0.0016 21.0 6.9 42 58-102 2-43 (46)
207 4ath_A MITF, microphthalmia-as 49.8 43 0.0015 23.6 5.7 23 58-80 53-75 (83)
208 3s4r_A Vimentin; alpha-helix, 49.8 54 0.0019 23.0 6.4 32 75-106 56-87 (93)
209 2ve7_A Kinetochore protein HEC 49.7 41 0.0014 28.5 6.7 52 60-121 184-235 (315)
210 3iox_A AGI/II, PA; alpha helix 49.4 95 0.0032 28.5 9.4 55 55-109 35-93 (497)
211 2wvr_A Geminin; DNA replicatio 49.1 77 0.0026 25.9 7.9 49 74-122 114-162 (209)
212 2wt7_B Transcription factor MA 48.9 70 0.0024 22.8 10.7 41 74-115 41-81 (90)
213 3he4_A Synzip6; heterodimeric 48.8 33 0.0011 22.0 4.5 35 55-89 18-52 (56)
214 1s1c_X RHO-associated, coiled- 48.6 62 0.0021 22.1 9.1 31 58-88 3-33 (71)
215 3oa7_A Head morphogenesis prot 48.5 79 0.0027 25.8 7.9 38 64-101 33-70 (206)
216 3lss_A Seryl-tRNA synthetase; 48.0 1.1E+02 0.0039 27.6 9.7 28 88-115 109-137 (484)
217 2zvf_A Alanyl-tRNA synthetase; 47.7 16 0.00056 27.3 3.6 21 85-105 35-55 (171)
218 2e7s_A RAB guanine nucleotide 47.2 54 0.0019 25.0 6.4 37 81-117 95-131 (135)
219 2lz1_A Nuclear factor erythroi 47.1 0.31 1.1E-05 35.4 -5.9 22 32-53 65-86 (90)
220 1hlo_A Protein (transcription 46.8 54 0.0018 22.0 5.8 58 46-103 21-78 (80)
221 2wq1_A General control protein 46.1 43 0.0015 19.8 4.4 24 80-103 5-28 (33)
222 2v4h_A NF-kappa-B essential mo 45.3 91 0.0031 23.1 10.5 72 32-107 37-108 (110)
223 1m1j_B Fibrinogen beta chain; 45.3 1.7E+02 0.0057 26.5 10.3 65 53-117 127-196 (464)
224 3iox_A AGI/II, PA; alpha helix 44.2 85 0.0029 28.8 8.2 28 58-85 31-58 (497)
225 2ve7_A Kinetochore protein HEC 43.9 32 0.0011 29.1 5.2 30 53-82 184-213 (315)
226 3htk_A Structural maintenance 43.9 58 0.002 20.4 8.0 7 94-100 45-51 (60)
227 3qh9_A Liprin-beta-2; coiled-c 43.1 84 0.0029 22.1 8.9 20 89-108 54-73 (81)
228 3gn9_A Type II secretory pathw 42.8 46 0.0016 24.5 5.3 30 95-124 8-37 (115)
229 2er8_A Regulatory protein Leu3 42.5 14 0.00048 23.8 2.1 22 52-73 47-68 (72)
230 3lss_A Seryl-tRNA synthetase; 42.2 1.6E+02 0.0055 26.5 9.8 22 95-116 109-131 (484)
231 2j5u_A MREC protein; bacterial 42.2 11 0.00037 31.1 1.9 14 66-79 24-37 (255)
232 3swk_A Vimentin; cytoskeleton, 42.1 83 0.0028 21.7 10.0 32 86-117 46-84 (86)
233 3mud_A DNA repair protein XRCC 41.8 1.3E+02 0.0043 23.9 8.0 21 51-71 139-159 (175)
234 1ez3_A Syntaxin-1A; three heli 41.4 90 0.0031 21.9 7.5 12 95-106 94-105 (127)
235 3gpv_A Transcriptional regulat 40.9 87 0.003 23.2 6.7 26 91-116 104-129 (148)
236 2kep_A General secretion pathw 40.6 48 0.0016 24.0 5.0 30 95-124 6-35 (110)
237 2eqb_B RAB guanine nucleotide 40.2 1E+02 0.0035 22.2 9.8 17 65-81 44-60 (97)
238 1hlo_A Protein (transcription 39.7 27 0.00092 23.6 3.3 20 54-73 57-76 (80)
239 1fmh_B General control protein 39.5 56 0.0019 19.0 4.4 24 81-104 7-30 (33)
240 3w03_C DNA repair protein XRCC 39.4 77 0.0026 25.3 6.4 26 55-80 153-178 (184)
241 1wt6_A Myotonin-protein kinase 39.0 99 0.0034 21.7 9.7 52 57-108 17-71 (81)
242 3ghg_A Fibrinogen alpha chain; 38.8 2.4E+02 0.0083 26.2 12.9 49 69-117 103-152 (562)
243 3bbp_D GRIP and coiled-coil do 37.7 48 0.0016 22.8 4.2 34 76-109 30-63 (71)
244 2yko_A LINE-1 ORF1P; RNA-bindi 37.4 80 0.0027 26.2 6.4 18 56-73 8-25 (233)
245 4dzo_A Mitotic spindle assembl 37.3 76 0.0026 23.5 5.7 20 55-74 5-24 (123)
246 3i00_A HIP-I, huntingtin-inter 37.0 1.3E+02 0.0043 22.3 11.0 43 55-97 16-62 (120)
247 3bbp_D GRIP and coiled-coil do 37.0 39 0.0013 23.3 3.7 20 82-101 43-62 (71)
248 4b4t_K 26S protease regulatory 37.0 62 0.0021 28.5 6.1 47 57-110 45-91 (428)
249 2zvf_A Alanyl-tRNA synthetase; 36.9 1.1E+02 0.0038 22.6 6.8 26 58-83 29-54 (171)
250 3mtu_A Tropomyosin alpha-1 cha 36.8 76 0.0026 21.5 5.3 34 55-88 17-50 (75)
251 1m1j_C Fibrinogen gamma chain; 36.6 2.2E+02 0.0076 25.1 11.5 46 72-117 88-133 (409)
252 2l5g_B Putative uncharacterize 36.6 76 0.0026 19.7 5.1 32 57-88 5-36 (42)
253 3qh9_A Liprin-beta-2; coiled-c 36.2 1.1E+02 0.0038 21.5 10.4 11 96-106 54-64 (81)
254 2cly_A ATP synthase B chain, m 36.1 1.7E+02 0.0059 23.6 8.3 37 59-95 120-156 (214)
255 1zxa_A CGMP-dependent protein 36.0 82 0.0028 21.3 5.2 24 52-75 23-46 (67)
256 3gp4_A Transcriptional regulat 35.6 1.2E+02 0.0039 22.4 6.6 30 81-110 87-116 (142)
257 1gk4_A Vimentin; intermediate 35.4 1E+02 0.0036 20.9 10.6 52 53-104 25-76 (84)
258 3vp9_A General transcriptional 35.3 1.2E+02 0.0041 21.6 7.0 44 57-100 39-86 (92)
259 1lrz_A FEMA, factor essential 34.5 1.4E+02 0.0047 25.5 7.8 20 93-112 285-304 (426)
260 1jcd_A Major outer membrane li 34.1 93 0.0032 19.9 7.9 23 62-84 5-27 (52)
261 4ati_A MITF, microphthalmia-as 33.7 16 0.00054 26.9 1.4 31 35-65 25-55 (118)
262 2iub_A CORA, divalent cation t 33.7 2.1E+02 0.0072 23.9 9.9 19 105-123 306-324 (363)
263 4b4t_M 26S protease regulatory 32.9 47 0.0016 29.4 4.6 23 85-107 49-71 (434)
264 2dq3_A Seryl-tRNA synthetase; 32.8 1.9E+02 0.0064 25.3 8.5 29 87-115 73-101 (425)
265 4ani_A Protein GRPE; chaperone 32.4 2E+02 0.0068 23.2 9.3 13 56-68 68-80 (213)
266 2z5i_A TM, general control pro 32.3 97 0.0033 19.6 6.4 34 43-76 8-41 (52)
267 2akf_A Coronin-1A; coiled coil 32.3 76 0.0026 18.4 5.0 23 90-112 7-29 (32)
268 1x8y_A Lamin A/C; structural p 32.0 1.2E+02 0.0042 20.7 8.6 29 78-106 31-59 (86)
269 3htk_B Structural maintenance 31.9 1.1E+02 0.0038 20.2 10.3 61 56-116 6-66 (73)
270 2fic_A Bridging integrator 1; 31.9 1.8E+02 0.0062 22.7 10.6 55 45-102 149-210 (251)
271 3q4f_C DNA repair protein XRCC 31.7 45 0.0015 26.9 3.9 22 54-75 161-182 (186)
272 1zxa_A CGMP-dependent protein 31.4 84 0.0029 21.2 4.7 31 83-113 26-56 (67)
273 3pdy_A Plectin; cytoskeleton, 31.2 1.8E+02 0.006 22.2 8.3 16 98-113 154-169 (210)
274 1m1j_A Fibrinogen alpha subuni 31.1 3.1E+02 0.011 25.1 10.6 46 70-115 113-158 (491)
275 4ati_A MITF, microphthalmia-as 30.9 37 0.0013 24.9 3.1 17 31-47 34-50 (118)
276 1ik9_A DNA repair protein XRCC 30.7 2.1E+02 0.0071 22.9 9.0 35 51-85 136-170 (213)
277 2oa5_A Hypothetical protein BQ 30.7 30 0.001 25.7 2.5 22 78-99 11-32 (110)
278 2pnv_A Small conductance calci 30.1 90 0.0031 19.3 4.3 25 89-113 16-40 (43)
279 2xv5_A Lamin-A/C; structural p 30.0 1.3E+02 0.0044 20.4 8.7 37 54-90 12-48 (74)
280 4dk0_A Putative MACA; alpha-ha 29.9 2.2E+02 0.0077 23.1 8.7 64 53-116 69-149 (369)
281 2avr_X Adhesion A; antiparalle 29.4 1.8E+02 0.0061 21.7 9.2 31 82-115 71-101 (119)
282 3oa7_A Head morphogenesis prot 29.0 1.6E+02 0.0055 24.0 6.7 37 72-108 34-70 (206)
283 2b9c_A Striated-muscle alpha t 28.8 1.9E+02 0.0065 21.9 12.6 81 34-120 38-125 (147)
284 3kin_B Kinesin heavy chain; mo 28.6 1.1E+02 0.0038 22.1 5.3 16 89-104 96-111 (117)
285 3tul_A Cell invasion protein S 28.2 1.5E+02 0.0053 23.1 6.3 27 82-108 100-126 (158)
286 2k48_A Nucleoprotein; viral pr 28.1 1.8E+02 0.0061 21.4 9.1 15 98-112 84-98 (107)
287 3cve_A Homer protein homolog 1 28.1 1.4E+02 0.0049 20.3 10.6 36 55-90 8-43 (72)
288 3viq_A SWI5-dependent recombin 27.9 1E+02 0.0034 22.9 5.0 46 59-107 5-50 (122)
289 3ibp_A Chromosome partition pr 27.4 2.9E+02 0.01 23.7 9.3 62 49-110 219-296 (302)
290 4b4t_M 26S protease regulatory 27.3 70 0.0024 28.3 4.8 26 87-112 44-69 (434)
291 1gk4_A Vimentin; intermediate 27.1 1.5E+02 0.0051 20.1 9.7 32 79-110 30-61 (84)
292 3viq_B Mating-type switching p 27.0 1.7E+02 0.0057 20.6 9.8 60 57-116 4-68 (85)
293 3fx0_A NF-kappa-B essential mo 26.9 31 0.0011 25.1 2.0 17 51-67 35-51 (96)
294 2w6b_A RHO guanine nucleotide 26.6 1.4E+02 0.0047 19.6 7.7 19 59-77 15-33 (56)
295 3tnu_A Keratin, type I cytoske 26.5 1.9E+02 0.0064 21.1 10.1 31 78-108 80-110 (131)
296 3uul_A Utrophin; spectrin repe 26.1 1.5E+02 0.0051 19.8 10.2 20 93-112 82-101 (118)
297 2gkw_A TNF receptor-associated 25.8 1.3E+02 0.0045 22.9 5.6 10 97-106 22-31 (192)
298 2wg5_A General control protein 25.8 55 0.0019 23.5 3.2 25 86-110 11-35 (109)
299 2p4v_A Transcription elongatio 25.4 2.2E+02 0.0075 21.5 9.1 61 56-118 11-75 (158)
300 4dci_A Uncharacterized protein 24.5 2.4E+02 0.0082 21.6 9.4 23 54-76 29-51 (150)
301 2ke4_A CDC42-interacting prote 24.4 1.9E+02 0.0066 20.5 8.6 64 53-116 21-89 (98)
302 1deq_A Fibrinogen (alpha chain 24.4 2.2E+02 0.0075 25.3 7.3 45 54-98 113-157 (390)
303 3ljm_A Coil Ser L9C; de novo d 24.3 1.1E+02 0.0036 17.5 4.2 9 59-67 6-14 (31)
304 3gwk_C SAG1039, putative uncha 24.2 1.6E+02 0.0054 19.4 8.4 30 58-87 12-41 (98)
305 2p22_A Suppressor protein STP2 23.8 2.7E+02 0.0091 21.9 7.4 13 88-100 69-81 (174)
306 1wlq_A Geminin; coiled-coil; 2 23.2 2E+02 0.0068 20.2 8.3 20 55-74 46-65 (83)
307 3tq7_B Microtubule-associated 23.2 1.9E+02 0.0064 20.1 5.4 33 54-86 8-40 (82)
308 1tac_A TAT protein; transcript 22.5 45 0.0015 23.7 2.0 18 146-164 4-21 (86)
309 3mud_A DNA repair protein XRCC 22.4 1.9E+02 0.0067 22.8 6.0 35 55-89 129-163 (175)
310 2w6a_A ARF GTPase-activating p 22.4 1.8E+02 0.0061 19.4 7.5 39 73-111 18-56 (63)
311 1d7m_A Cortexillin I; coiled-c 22.4 2.2E+02 0.0076 20.5 10.4 39 46-84 17-55 (101)
312 3thf_A Protein shroom; coiled- 22.2 3.1E+02 0.01 22.0 11.4 33 49-81 14-46 (190)
313 2aze_A Transcription factor DP 22.1 2E+02 0.0068 22.4 5.9 22 62-83 6-27 (155)
314 2dq3_A Seryl-tRNA synthetase; 22.1 60 0.002 28.5 3.3 24 93-116 72-95 (425)
315 3m0a_A TNF receptor-associated 22.0 1.6E+02 0.0055 18.7 9.3 21 90-110 41-61 (66)
316 2wg5_A General control protein 22.0 70 0.0024 22.9 3.1 26 92-117 10-35 (109)
317 2js5_A Uncharacterized protein 21.9 1.9E+02 0.0067 19.6 8.4 24 57-80 6-29 (71)
318 3uun_A Dystrophin; triple heli 21.9 1.8E+02 0.0062 19.3 10.2 20 93-112 82-101 (119)
319 3p7i_A PHND, subunit of alkylp 21.3 1.2E+02 0.004 24.9 4.8 36 39-74 276-311 (321)
320 3vmx_A Voltage-gated hydrogen 21.2 1.7E+02 0.0057 18.6 6.7 35 78-112 7-41 (48)
321 2gkw_A TNF receptor-associated 21.1 1.9E+02 0.0065 21.9 5.7 12 58-69 4-15 (192)
322 3jsv_C NF-kappa-B essential mo 20.9 2.4E+02 0.0081 20.2 8.9 46 56-101 4-52 (94)
323 1lwu_B Fibrinogen beta chain; 20.7 67 0.0023 27.5 3.2 20 91-110 37-56 (323)
324 2f42_A STIP1 homology and U-bo 20.7 3E+02 0.01 21.3 6.8 15 103-117 82-96 (179)
325 1fzc_C Fibrin; blood coagulati 20.6 58 0.002 28.0 2.7 6 60-65 10-15 (319)
326 4b4t_J 26S protease regulatory 20.5 1.3E+02 0.0043 26.5 5.0 18 89-106 46-63 (405)
327 1hwt_C Protein (heme activator 20.2 76 0.0026 20.5 2.8 22 52-73 56-77 (81)
328 2aze_B Transcription factor E2 20.2 2.4E+02 0.0084 20.1 6.2 11 152-162 86-98 (106)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.59 E-value=1.5e-15 Score=101.99 Aligned_cols=52 Identities=31% Similarity=0.531 Sum_probs=47.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 33 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
|+.+||++||+||++||+||++|+++|+.+|..|+.+|..|..++..|++.|
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999988888776544
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.41 E-value=9.8e-13 Score=90.00 Aligned_cols=51 Identities=25% Similarity=0.362 Sum_probs=44.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q 82 (172)
|||++|+++||+||++||.||++++++|+.+|..|+.+|..|..++..|..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999998877777766654433
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.30 E-value=1.3e-11 Score=83.71 Aligned_cols=49 Identities=24% Similarity=0.387 Sum_probs=43.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 33 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
||.+|+++||+||++||.||++++++|+.+|..|+.+|..|..++..|.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999988888877765543
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.29 E-value=5.8e-12 Score=86.50 Aligned_cols=46 Identities=28% Similarity=0.364 Sum_probs=40.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 39 ISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 39 lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
.+||+||+|||.||++|+++|+.+|..|+.+|..|..++..|++.+
T Consensus 15 ~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 15 ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999999999999998888887777766544
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.21 E-value=3.5e-11 Score=81.85 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=42.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 044691 34 KRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 34 r~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q 82 (172)
+.+|..+||+||++||.||++++++|+.+|..|+.+|..|..++..|..
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999888888877665433
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.14 E-value=1.7e-10 Score=80.98 Aligned_cols=60 Identities=28% Similarity=0.330 Sum_probs=45.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 34 KRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSV 93 (172)
Q Consensus 34 r~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~ 93 (172)
..||+..||.|+|.+|.||.+|+.+|+.+|..|+..+..|..++..|..++..|..||..
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999988887654444444444444444433
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.00 E-value=1.1e-09 Score=74.87 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 33 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 33 Rr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
|+.+++.+||.||+|+|.||+++.++|+.++..|+.+|..|..++..|
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999988877777666543
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.68 E-value=1.2e-07 Score=67.61 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINI 79 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~ 79 (172)
|+....|..+|.++|+|||.++++...+++.++..|+.||..|..+|..
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566789999999999999999999999999887766666655543
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.67 E-value=1.4e-07 Score=68.49 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
|++...|..+|.++|+|||.++++...+++.++..|+. ||..|++++..|...+..|..
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~---------------------EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTA---------------------ENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 44566667899999999999999999999888888765 555555555556666666666
Q ss_pred HHH
Q 044691 111 IIS 113 (172)
Q Consensus 111 il~ 113 (172)
++.
T Consensus 72 ll~ 74 (87)
T 1hjb_A 72 LFK 74 (87)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.52 E-value=2.8e-09 Score=80.21 Aligned_cols=70 Identities=23% Similarity=0.467 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 29 LMDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 29 ~~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
..+-|.+||.++||.+|+.||.||.+..++||.++..|+.+...| ..||..|+.++..|..++..|
T Consensus 33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L--------------~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL--------------ASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT--------------TSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 345588999999999999999999999999998888777665555 456777777777777666666
Q ss_pred HHHH
Q 044691 109 NEII 112 (172)
Q Consensus 109 ~~il 112 (172)
..++
T Consensus 99 ~~~a 102 (107)
T 3a5t_A 99 QNFA 102 (107)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.12 E-value=2.7e-05 Score=56.85 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 29 LMDQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 29 ~~deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
...-|.+||-++||..|+-+|.||....++||.++..|..+...|. .||..+..++..+..++..
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~--------------~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK--------------QEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 4566888999999999999999999999999998888876666555 4455555555555555543
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.03 E-value=0.0019 Score=40.89 Aligned_cols=39 Identities=26% Similarity=0.432 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
+.|+.+||.++..|+..|.+|..++.. |..||.-||+-+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLST-------LQNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHh
Confidence 579999999999999888888776654 678999998755
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.73 E-value=0.018 Score=41.18 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+.-|..++..|+.+|..|..++..+......+..||..|+.+......||+.|-.-+
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334556777777777777777777777777788899999999988888888775543
No 14
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.22 E-value=0.022 Score=37.50 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
.+.|-.||+.|+.||.-|++++..-..++.+|+.|-.-+++-+..|..
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~ 52 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence 578999999999999999999999999999999998888876665543
No 15
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.08 E-value=0.0035 Score=45.72 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 044691 30 MDQRKRKRMISNRESARRSRMRKQKHLDDLMA 61 (172)
Q Consensus 30 ~deRr~rR~lsNRESARRSR~RKq~~leeLe~ 61 (172)
...|..||..+||.+|+++|.||....+.|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 34578889999999999999999998877653
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.08 E-value=0.082 Score=40.69 Aligned_cols=63 Identities=13% Similarity=0.169 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
+.++..+.|+.++..+..|...|..++..+..++..+..++..|+.++.+|..++..|+.-+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888888888888888888888888888888888888888888765543
No 17
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.79 E-value=0.15 Score=36.35 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
.-++.|+.+|.++-....-|.-++..|+++...+..+|..++.....|.+....|..-..
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 347889999999988888888888888888888888888865555555555444444433
No 18
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.40 E-value=0.08 Score=35.91 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRA 96 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRa 96 (172)
+..-|++|.+|.+-|..|..++..+...++.|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 45568899999999999999999999999999999999984
No 19
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=95.13 E-value=0.067 Score=38.47 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=33.0
Q ss_pred HHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRM---RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYM 85 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~---RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~ 85 (172)
+||.|=-++=|-|-...|. --+..++.|+.+-..|+.+...|..++..|...+.
T Consensus 18 ~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 18 IRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433343333333333 34567889999999999888877766665554443
No 20
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.93 E-value=0.096 Score=35.15 Aligned_cols=40 Identities=18% Similarity=0.315 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
...+..+..+...|+.+|..|+.++..|...+..|..+|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777888889999999999999999999999998874
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=94.65 E-value=0.13 Score=34.42 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 75 TSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 75 ~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
..+..|...+..|+.+|..|+.++..|...+..|..++..
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4467778888999999999999999999999999998854
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.42 E-value=0.16 Score=33.57 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 75 TSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 75 ~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
..+..|...+..|+.+|..|+.++..|+..+..|..+|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888999999999999999999999988776
No 23
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=94.28 E-value=0.34 Score=34.07 Aligned_cols=37 Identities=16% Similarity=0.324 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 76 SINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 76 ~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
....+.+.+..|+.||..|+.++..|...+..|..+|
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777888888888888888888888777665
No 24
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=93.46 E-value=0.26 Score=36.29 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
.+..|..+|..|+.||..|..++..|.-++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777776665443
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.42 E-value=1.1 Score=34.31 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+..++..|+.+...+..++..+......+..++..++.++.+|..++..|..-+..++
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666666666777777666666665554
No 26
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=93.42 E-value=0.4 Score=30.43 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
.+..|+.+|+.|+.||..|....-.-+....-|+.|-..||..+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999998776555555555666666665554
No 27
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.24 E-value=0.6 Score=34.52 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIIT-------SINIATQHYMNIESENSVLRAQ 97 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~-------~l~~l~q~~~~le~EN~~LRaq 97 (172)
.-+|+..++.|+.||..|+. ++..|...+..|.+||..|+.+
T Consensus 39 Yl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 39 YLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888877776 4444444444455555555444
No 28
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=92.44 E-value=1.1 Score=32.78 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
..+..|+.+++....+...|...+..-......++.++..+..++.+|+.-|
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555556666666666666666666666666666666544
No 29
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=92.43 E-value=0.18 Score=33.44 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
...+..|...+..|+.+|..|+.++..|...+..|..+|-
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888999999999999999999888877663
No 30
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.33 E-value=1.9 Score=42.63 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINI----ATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~----l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
++.+++|+.++..+.+|...+..++.. |.++...|+.||..|++++.+|...+...+
T Consensus 990 ~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 990 QEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444332 234445566777777777777765554443
No 31
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=92.25 E-value=0.77 Score=29.70 Aligned_cols=39 Identities=26% Similarity=0.183 Sum_probs=33.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 60 MAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
+.++..|+.-|..|..++..|...|..++.|+..|++=+
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 567888999999999999999999999999988887644
No 32
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=92.16 E-value=0.96 Score=30.22 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=19.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 044691 38 MISNRESARRSRMRKQKHLDDLMA 61 (172)
Q Consensus 38 ~lsNRESARRSR~RKq~~leeLe~ 61 (172)
.-+||.++|++|.|=++.++....
T Consensus 6 ryknr~asrk~rakfkn~lqh~r~ 29 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQHYRE 29 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999998877655443
No 33
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=92.14 E-value=1.3 Score=31.29 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
++..+..|...||.+++++...|.
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333334444444444333333
No 34
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=91.86 E-value=0.53 Score=31.37 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 60 MAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLG 99 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~ 99 (172)
+.++..|+.-|-.|..++..|+.+|...+.|+..|++-+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888889999999999999999999999988876443
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.67 E-value=1.8 Score=38.40 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
.+.+..++.+.+.+..+++.+..+++...+.+..++.|...|+.++.+-.+++..+.+-
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 33444555666666677777777777777777777777777766665555555544433
No 36
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.35 E-value=0.42 Score=32.97 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 71 HQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 71 ~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
..|..++..+......+..||..|+.++..|..++..|
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455555566666677888899999888888887654
No 37
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=91.25 E-value=0.31 Score=28.28 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL 105 (172)
-+..+++||..|++.+.+|-.++
T Consensus 7 llasleaenkqlkakveellakv 29 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667888999999888886654
No 38
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=91.21 E-value=2 Score=30.10 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIA------TQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l------~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
-|+.++.|+.++..|+.+...|...+..- -..+..+..+-..+..++..+-.|+..|.++.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35578999999999999999999988642 24667778888888888888888888776654
No 39
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.30 E-value=3.8 Score=29.46 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
-....+.++.++..++..+..+..++..|+.++..++.+-..+..++.+...+|.
T Consensus 21 a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLe 75 (101)
T 3u1c_A 21 ALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLL 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666666665555555555544444333
No 40
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=90.21 E-value=0.83 Score=32.34 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 68 KDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 68 ~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.||..|..++..+...+..|..||..|+ +|...++.|-+||+.+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~----el~~~~~~laevl~~l 77 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 5889999999988888888899998874 5556666666666543
No 41
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.16 E-value=2.4 Score=29.41 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
.++..++..++.+|..|..++..+++.+..-..+-..++.++..+..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888999999999999999998888888777777777665443
No 42
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.07 E-value=2.7 Score=33.99 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+..|+.++..|+..+..|...|..|.+....++....++..-+..+..++...-+-..+++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE 150 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLE 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555555555555555555555555555555444443
No 43
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=89.87 E-value=3.5 Score=28.98 Aligned_cols=61 Identities=10% Similarity=0.206 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
=++.+..-.+++..|+.-...|..--..+..-+..++.|-..|...+.-|+++...|..++
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777788888888888888888788888888888888888888888888888776553
No 44
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=89.59 E-value=0.75 Score=27.70 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
++..||.+|..|-.+|..|..++..|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46677777777776666666555444
No 45
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=89.55 E-value=0.45 Score=28.55 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
+..||.+|..|-.+|..|..++..|+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677777777776666666655443
No 46
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=89.39 E-value=1.3 Score=30.95 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
++.+||.+++-++. .|..|......-..+-..|+.++..|..|++.+.
T Consensus 15 Ri~~LE~klAfqE~-------tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQ-------ALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555554444 4444444444444555556666666666655544
No 47
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=89.15 E-value=0.98 Score=27.51 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q 82 (172)
++..|+.+|..|-.+|..|..++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5667888888887777777666655543
No 48
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.02 E-value=5.1 Score=31.44 Aligned_cols=43 Identities=16% Similarity=0.031 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLG 99 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~ 99 (172)
.+-..-+..|+.|...|.-+++.+..+...++.||..|-.+.+
T Consensus 92 ~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 92 ALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333556666777777777777777777777777776655444
No 49
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=88.90 E-value=2.8 Score=31.75 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
+.|+.+.++-++..++|..+|..|.+++....+|-..||.+...|..|+
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 3444444444444555555555555555555666555655555555444
No 50
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.83 E-value=3.5 Score=29.02 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
.+++..++..++.+|..|..++..+++.+..-..+-..++.++..+...
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~ 56 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQL 56 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888899999999888888888777777777776654433
No 51
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=88.77 E-value=0.64 Score=28.34 Aligned_cols=28 Identities=11% Similarity=0.245 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q 82 (172)
++..||.+|..|..+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567888888887777777666655544
No 52
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=88.40 E-value=2.7 Score=34.17 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+++++.-..-|+.|..||..|..++....+....|..+-..|+++...+...+....+-+
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i 71 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS 71 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 344455555677777777777777776666666666666666666655554444444433
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.20 E-value=8 Score=30.32 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
+.+|+..+..-.+.+..|..++..|.-++..++.....|.++-..|-
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444444433
No 54
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=88.16 E-value=5.4 Score=28.39 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=34.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 67 RKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 67 ~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
-.||..|...+..+......+..||..|+ +|....+.|-++|+.+.
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~~L~ 82 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIERLS 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 35788888888888888888888888765 46667777777777653
No 55
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.79 E-value=5.9 Score=35.06 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.|+..+..++...+.+..++....+.......+-..|+.+..++..+++.....+..+
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence 3334444444444444444444444444444444444455555555555555444444
No 56
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=87.58 E-value=0.87 Score=30.48 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
...+..|..+...|..+|..|+.++..|+..|.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667777888888999999999988877653
No 57
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=87.06 E-value=6.4 Score=28.60 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 40 SNRESARRSRMRKQKHLDDLMAQVAQLR---KDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 40 sNRESARRSR~RKq~~leeLe~qv~~L~---~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.|-.+|-..=..|+..+++|...+.+++ ..+..|..++..-...+..-.+.=..|-.+..+|...|..|..-+..++
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~ 88 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLK 88 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666779999999999998888 4566678888888777777667666777777777777776666554443
No 58
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.79 E-value=5.6 Score=39.30 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
.+..+..+...|..++.+|..++.
T Consensus 914 ~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433333
No 59
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=86.70 E-value=0.046 Score=39.80 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQK 54 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~ 54 (172)
-|..||.-+||.+|+++|.||..
T Consensus 65 IrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 65 VRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 47788899999999999999853
No 60
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=86.59 E-value=1.5 Score=26.35 Aligned_cols=27 Identities=0% Similarity=-0.071 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
++..||.+|..|-.+|..|..++..|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456677777777666666655554443
No 61
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=86.32 E-value=4.2 Score=26.32 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSI 77 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l 77 (172)
+|..++..|...|..|...+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L 32 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETL 32 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 62
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.23 E-value=7.5 Score=27.90 Aligned_cols=62 Identities=10% Similarity=0.215 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 48 SRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 48 SR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.+.++-..+..|..++..|+.+...+...+......+..-+..-..-.+++..|.+|++.|.
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444445555555555544444444444444444333333334456677777776654
No 63
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.11 E-value=11 Score=29.87 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
++...++.++..+..|...+..|......|+.|...|.+++
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555554444433
No 64
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=85.97 E-value=0.62 Score=32.80 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 69 DNHQIITSINIATQHYMNIESENSVLRA 96 (172)
Q Consensus 69 EN~~L~~~l~~l~q~~~~le~EN~~LRa 96 (172)
|...|+.+|..|..+...|+.||..||.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666777777764
No 65
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.96 E-value=4.6 Score=26.12 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 79 IATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 79 ~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.+..+...|...|..|-+-+.+-+++|..|.+.|+.+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555566666666666666666666666554
No 66
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.60 E-value=7.9 Score=27.59 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
-....+.++.++..++..+..+...+..|+.++..++.+-..+..++.....+
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k 73 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666555555554444444433
No 67
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=85.57 E-value=7.9 Score=27.54 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q 82 (172)
.+|..|+.+|..|..++..+.+
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566666666555555443
No 68
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=85.53 E-value=0.99 Score=38.11 Aligned_cols=41 Identities=24% Similarity=0.254 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 77 INIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 77 l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+..+..++..+...|..|++.+.+++.+|..|.+-++.+..
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455556666677777777788888888888888877764
No 69
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.48 E-value=13 Score=29.96 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 60 MAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
...+..|+.+...|......+..++..|+..|.-|.........-|.
T Consensus 87 ~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 34466666666666666666666666666666666554444444444
No 70
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=84.90 E-value=16 Score=36.19 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=10.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIES 89 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~ 89 (172)
+..|+.+...|..++..+......++.
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee 1012 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEE 1012 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 71
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.89 E-value=9.7 Score=28.03 Aligned_cols=16 Identities=44% Similarity=0.704 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 044691 101 LTHRLHSLNEIISFLD 116 (172)
Q Consensus 101 L~~rL~~l~~il~~~~ 116 (172)
|..++.+|.+-|.+++
T Consensus 88 LE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 88 LERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555666666655554
No 72
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=84.73 E-value=1.8 Score=36.49 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESE 90 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~E 90 (172)
.+.+|+.++..|...|..|...+..+++++..|..|
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777766666555444443333333
No 73
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.66 E-value=10 Score=28.20 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 43 ESARRSRMRKQKHLDDLMAQVAQLRK---DNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 43 ESARRSR~RKq~~leeLe~qv~~L~~---EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.+|-..=..|+..+++|..++.+++. ...-|..++..-...+..=.+.=..|-.+..+|..+|..|..-+
T Consensus 34 ~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 34 QQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 45555555688888888888888777 55667777777766666555555555555555555555554433
No 74
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.51 E-value=2.4 Score=27.53 Aligned_cols=14 Identities=14% Similarity=0.256 Sum_probs=6.2
Q ss_pred HHHHHHHhHHHHHH
Q 044691 62 QVAQLRKDNHQIIT 75 (172)
Q Consensus 62 qv~~L~~EN~~L~~ 75 (172)
.+..|+.||..|+.
T Consensus 20 d~eaLk~E~~eLk~ 33 (53)
T 2yy0_A 20 EIELLRLELAEMKE 33 (53)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444444443
No 75
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.43 E-value=2.2 Score=25.45 Aligned_cols=25 Identities=0% Similarity=0.092 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
+..||.+|..|-.+|..|..++..|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4567777777766666665555444
No 76
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.24 E-value=3.3 Score=28.79 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=27.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 66 LRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 66 L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
|+.....|..++.....-+..|-..-..-..++..|+.+|+.|.+-+..+..
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333344445555555555555555555566667777777777666665554
No 77
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=84.16 E-value=1.2 Score=29.03 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 75 TSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 75 ~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
..+..|..+...|+.||..|+.++..|...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777778888999999999998887543
No 78
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=83.98 E-value=2 Score=24.32 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 86 NIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 86 ~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.|+-||..|.+.++.|.+++.+|.
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 455666666666666666666653
No 79
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=83.68 E-value=2.3 Score=24.93 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
+..|+.+|++.+.||-+|.+++..|
T Consensus 3 vaqlekevaqaeaenyqleqevaql 27 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQL 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3456666666655555555544443
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.61 E-value=2.6 Score=27.30 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
.+..|..||..|++++.+|..++..|..
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555444
No 81
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=83.51 E-value=1.9 Score=25.87 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
++..|+.+|..|-.+|..|..++..|+
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456677777777777766666555443
No 82
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=83.24 E-value=2.7 Score=25.63 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 68 KDNHQIITSINIATQHYMNIESENSVLR 95 (172)
Q Consensus 68 ~EN~~L~~~l~~l~q~~~~le~EN~~LR 95 (172)
.||..|...+..-.+++..|..||..|.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5889999999988888999999998875
No 83
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=83.05 E-value=9.8 Score=26.64 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
.....+|+.+...|..+...|..++..+...+..|......|..++.+|..||
T Consensus 34 e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 34 ERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445677777788888877777788888888888888888888888887776
No 84
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.77 E-value=11 Score=37.25 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044691 93 VLRAQLGELTHRLHSLN 109 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~ 109 (172)
.|..+..+|..++..+.
T Consensus 917 ~l~~~~~~Le~~l~ele 933 (1184)
T 1i84_S 917 RLAAKKQELEEILHEME 933 (1184)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 85
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=82.56 E-value=3 Score=24.92 Aligned_cols=26 Identities=12% Similarity=0.087 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
+..||.+|..|-.+|..|..++..++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55677788877777776666655443
No 86
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=82.50 E-value=6.6 Score=28.97 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHh
Q 044691 29 LMDQRKRKRMISN 41 (172)
Q Consensus 29 ~~deRr~rR~lsN 41 (172)
..++|-+|-|++|
T Consensus 6 EvEEKyrKAMVsn 18 (103)
T 4h22_A 6 EVEEKYKKAMVSN 18 (103)
T ss_dssp --CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567888889888
No 87
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=82.41 E-value=6.8 Score=27.25 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
++.+=+.++..|+..-.--.+..+.|.-.+-.+-.||..|..++..|++
T Consensus 26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 4444445555555444444444555666667788899999888877754
No 88
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=82.11 E-value=9.5 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 84 YMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 84 ~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
+..|+.|...|..++.+...++..|..-..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 556666666666666666555555554444
No 89
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=82.06 E-value=2 Score=25.84 Aligned_cols=26 Identities=8% Similarity=0.284 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
++..||.+|..|-.+|..|..++..|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 45567777777766666665555444
No 90
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.03 E-value=13 Score=27.48 Aligned_cols=29 Identities=10% Similarity=0.186 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
+..|+.++..++..+..|...+..+..++
T Consensus 47 iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 47 MQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554443
No 91
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=81.58 E-value=2.1 Score=25.72 Aligned_cols=26 Identities=4% Similarity=0.043 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
+..||.+|..|-.+|..|..++..|+
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45677777777776666666555443
No 92
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=80.95 E-value=17 Score=29.54 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLR 95 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LR 95 (172)
..|+.++..|..+|..|...++.+..++..+..+...+.
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666666666665555444443
No 93
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=80.77 E-value=2.3 Score=29.21 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
..|..++..|..++.+|..+...|..-
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~ 76 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQ 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 94
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=80.53 E-value=15 Score=27.09 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
+..|+.++..|+..+..|...+..+..++
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44556666666666666666655555443
No 95
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.44 E-value=7.4 Score=34.19 Aligned_cols=15 Identities=20% Similarity=0.034 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 044691 86 NIESENSVLRAQLGE 100 (172)
Q Consensus 86 ~le~EN~~LRaq~~e 100 (172)
.++.++..|.+++.+
T Consensus 28 ~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 28 DTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444443333
No 96
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.64 E-value=6.5 Score=31.90 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.+..|..++..|..++.....++..|+++...++.+-..+..++..-..-+....++++.+.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LT 82 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLC 82 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHcc
Confidence 45566666666666666666666666666666666666666666555555566666666553
No 97
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=79.24 E-value=9.6 Score=28.41 Aligned_cols=27 Identities=15% Similarity=0.426 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINI 79 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~ 79 (172)
..-+++|.+++.+|+-||..|+.++..
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999873
No 98
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=78.56 E-value=9.8 Score=23.81 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 80 ATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 80 l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
|..+...++.-|+.|..++..|+..=..|..|
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333444444444444444444444444333
No 99
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=78.21 E-value=1.1 Score=37.11 Aligned_cols=7 Identities=0% Similarity=0.112 Sum_probs=3.3
Q ss_pred CCccccc
Q 044691 158 LNQPIMA 164 (172)
Q Consensus 158 ~~qpi~a 164 (172)
+++|+++
T Consensus 99 ~gm~Vi~ 105 (255)
T 2j5u_A 99 PDMAVTT 105 (255)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
Confidence 3455544
No 100
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=78.10 E-value=23 Score=29.02 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=32.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 68 KDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 68 ~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.||..|..+|..+......|..||..|+. |...++.|-++|..+-
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLke----Lae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAE----VAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 48888888888887777777777777654 4555666777776664
No 101
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=77.83 E-value=4.5 Score=24.27 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 77 INIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 77 l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
++.|..+...|..+|..|..++..|+.-|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34555666677778888888777766543
No 102
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=77.82 E-value=11 Score=24.68 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
..|.++...|..||..||.++..-...|..|+.-
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 4455667778889999999988877777665543
No 103
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=77.76 E-value=6.8 Score=27.87 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 68 KDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 68 ~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
.||..|...+..+......+..+|..|+.-+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776666666666666665433
No 104
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.75 E-value=11 Score=29.47 Aligned_cols=38 Identities=29% Similarity=0.217 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 80 ATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 80 l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
.+...+.++..|..|+.++.+-...|.+++..+..++.
T Consensus 106 ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 106 ARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666788899999999999999999999999988876
No 105
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.62 E-value=13 Score=27.40 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 72 QIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 72 ~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+|..+.=.|...+..++.||..|+........++..|..-|+.+.
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~ 78 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLR 78 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 455555566677777788888888766666666666666555553
No 106
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.40 E-value=17 Score=25.84 Aligned_cols=57 Identities=12% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
+-..+..|..++..|+.+-..+...+..+...+...+..-..-.++++.|.+|++.|
T Consensus 42 ~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333333333333332222222222233555555555544
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.26 E-value=13 Score=41.05 Aligned_cols=50 Identities=8% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 63 VAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 63 v~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+...+.+...+..++..++.+|.....|...|+.++.....||...+.++
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li 2079 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALL 2079 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666666666666777777777776666666555554
No 108
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=77.19 E-value=2.3 Score=27.71 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 80 ATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 80 l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
+...+..+..||..|+.++..|..+
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555666666665555444
No 109
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=77.17 E-value=6.2 Score=26.96 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 79 IATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 79 ~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
.|.+....++.|...|+.+...|..+|..
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555543
No 110
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.06 E-value=8.4 Score=34.07 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 66 LRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 66 L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
|+.|...|..++..+.+....+..|+..+++++.+....-+.|...+..+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444455555555555544444434343333333
No 111
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=76.87 E-value=20 Score=26.54 Aligned_cols=60 Identities=20% Similarity=0.211 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+..|+.++..|+..+..|...+..|.+....|+......-.-+..+..++...-+-...+
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalL 96 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFL 96 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455777777777777777777777777777777777777777777777776555444444
No 112
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=76.81 E-value=10 Score=23.74 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 79 IATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 79 ~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.|.+++..+..|-..-+.++.+|+.++..|.+..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777788888888888888888888888764
No 113
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.75 E-value=15 Score=25.05 Aligned_cols=52 Identities=15% Similarity=0.235 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
++..|+.+......++..+...+...+..+..+..++..|..+++.+..-++
T Consensus 7 Km~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 7 KMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444444444443
No 114
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=76.63 E-value=12 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.316 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 80 ATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 80 l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
++....+|+.+-..|..-++.|++.+..|+
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 333333334444444444444544444443
No 115
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=76.59 E-value=4.6 Score=24.26 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 81 TQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 81 ~q~~~~le~EN~~LRaq~~e 100 (172)
.+....+..+|..|..|+..
T Consensus 13 qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 13 QQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 33344445556666655543
No 116
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=76.32 E-value=17 Score=25.44 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIA-------TQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l-------~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.++-.+|..|-.||.+|...-+.| ..+...|..|+..|+.++..++.-...++
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~ 64 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLE 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 355667777888888776655444 44555556666666655555444433333
No 117
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=76.25 E-value=3.4 Score=24.68 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
+.|..+...|..+|..|..++..|+.-
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345566677778888888888777653
No 118
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=75.94 E-value=4.3 Score=23.43 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
+.|.+-++.|+.||.+|..++..+-
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999888876653
No 119
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=75.44 E-value=6.5 Score=27.19 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL~ 106 (172)
..+..|+..|+.+...|..+|.
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444443
No 120
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=74.97 E-value=2.1 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=18.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 044691 64 AQLRKDNHQIITSINIATQHYMNI 87 (172)
Q Consensus 64 ~~L~~EN~~L~~~l~~l~q~~~~l 87 (172)
..|+.||..|.+++..++++...|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 467788888888888877776654
No 121
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=74.89 E-value=10 Score=26.01 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=38.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 37 RMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 37 R~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
|+...-.+-|+-|.+=...+.+|..-|-.... ...-..-+......+..|..++..|..+...|..+++...
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~-k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEA-KLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555666666556667777666653200 0001112333445556666667777777777766666543
No 122
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.24 E-value=42 Score=28.97 Aligned_cols=33 Identities=24% Similarity=0.260 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 77 INIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 77 l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.....+....+..||..|+..+.++-..+...+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEADLALASAN 469 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcc
Confidence 333334444444444444444444444444333
No 123
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=74.22 E-value=23 Score=26.77 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNI 87 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~l 87 (172)
.++|+.++..|+..|..|..++..+..++..+
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777778888888888888887777777555
No 124
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=73.84 E-value=7 Score=28.61 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 75 TSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 75 ~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
.++..+++.+..|+.||..|+.++..|..+|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888888888888888888887776
No 125
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=73.63 E-value=2.1 Score=35.52 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 31 DQRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRK 68 (172)
Q Consensus 31 deRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~ 68 (172)
+.+|-+|.+|-=.-=-|.|+-|..-.+++-.+.+.+..
T Consensus 118 ~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~ 155 (250)
T 2ve7_C 118 KAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSAD 155 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888775444445555555444444444433333
No 126
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=73.16 E-value=39 Score=29.19 Aligned_cols=51 Identities=10% Similarity=-0.003 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
++.+....+.+-.....+++.+.+....++.+...+..++.+-.++++.+.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 426 QQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 333333344444444444444444455555555555555555555555443
No 127
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=72.86 E-value=17 Score=23.66 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
.++...+..|+.+...++..+....+.|..|..=...|-.+++..+.-|
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566677777777777777777777778877777777777777766544
No 128
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=72.76 E-value=8.4 Score=23.09 Aligned_cols=26 Identities=4% Similarity=0.091 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
++..|+.+|..|-.++..|..++..+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45667777777776666666555444
No 129
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=72.73 E-value=29 Score=31.47 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 86 NIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 86 ~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
.|..+-..|+.++.+|..++..+.+-+
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444
No 130
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=72.62 E-value=11 Score=26.10 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQII 74 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~ 74 (172)
...+++|+.++.....+...|+
T Consensus 39 d~~I~eLEk~L~ekd~eI~~Lq 60 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 131
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=72.39 E-value=4.1 Score=26.52 Aligned_cols=30 Identities=7% Similarity=0.162 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQH 83 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~ 83 (172)
..|+.+...+..|..+|..|..++..+.++
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788888888888888888877766543
No 132
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=71.75 E-value=16 Score=32.01 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
+..+..|+.++..|+.+...+..++..+.+++...+.+-..|
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l 50 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTL 50 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555444444444333333
No 133
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.98 E-value=29 Score=25.67 Aligned_cols=34 Identities=24% Similarity=0.149 Sum_probs=17.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 61 AQVAQLRKDNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 61 ~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
..+..|+.+...|+.....+...+..|+..|.-|
T Consensus 35 ~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 35 KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3444555555555555555555555555555555
No 134
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=70.61 E-value=18 Score=31.85 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
.+.+|..++..|+.++.++..++..+.+++...+.+...|--++.+|+.
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455555555666666666666666666655555555555555555544
No 135
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=70.57 E-value=5 Score=28.17 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQII 74 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~ 74 (172)
++.+|+.++.+|+.||.-|+
T Consensus 23 ~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 23 QIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444
No 136
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=70.39 E-value=11 Score=26.40 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 044691 89 SENSVLRAQLG 99 (172)
Q Consensus 89 ~EN~~LRaq~~ 99 (172)
.+|..|+.++.
T Consensus 73 ~~n~~L~~rl~ 83 (88)
T 1nkp_A 73 KRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 137
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=70.39 E-value=7.7 Score=26.71 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSIN 78 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~ 78 (172)
-.|+..|+.++..|+.++..|...+.
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777666666666665553
No 138
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.26 E-value=3.9 Score=37.64 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 29 LMDQRKRKRMISNRES-ARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 29 ~~deRr~rR~lsNRES-ARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
..++|.+|.+.++|-. .+.-|..=.....+|+.++.+++.+.......+....+....|+.+-.+...+...|..+-..
T Consensus 309 a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~ 388 (575)
T 2i1j_A 309 AREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNE 388 (575)
T ss_dssp HHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555431 111222222335667777777777777776666666555555555555555554444444444
Q ss_pred HHHHHHHH
Q 044691 108 LNEIISFL 115 (172)
Q Consensus 108 l~~il~~~ 115 (172)
+.+....+
T Consensus 389 ~e~~~~~l 396 (575)
T 2i1j_A 389 LQAMMQRL 396 (575)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444333
No 139
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=69.92 E-value=7 Score=27.02 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHh
Q 044691 55 HLDDLMAQVAQLRKD 69 (172)
Q Consensus 55 ~leeLe~qv~~L~~E 69 (172)
|+..|+.+...|..+
T Consensus 48 yI~~L~~~~~~l~~e 62 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQ 62 (80)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 140
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=69.88 E-value=30 Score=25.46 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+.+.+..+..|......|...+..+..++...+..|..|-+....|...+..|..-|.-++
T Consensus 64 l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 64 LADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666666667777777777777776666666666666666665544
No 141
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=69.83 E-value=9.3 Score=22.86 Aligned_cols=29 Identities=10% Similarity=-0.018 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 77 INIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 77 l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
++.|..+...|..+|..|..+++.|+.-|
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455566667778888888877766543
No 142
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=69.72 E-value=44 Score=28.73 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044691 92 SVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 92 ~~LRaq~~eL~~rL~~l~~il~ 113 (172)
.+|..++.+|.++|+.+.-.++
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 446 EELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 143
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=69.56 E-value=25 Score=24.38 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
++||.+|.+|+.-...|..++..|--. .++-...|+.++..|..++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 456777777766655555555443322 234455666777766666655
No 144
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=68.88 E-value=10 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
+.|..+...|..+|..|..+++.|+.-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455566667778888888877766543
No 145
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=68.73 E-value=20 Score=22.81 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVL 94 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~L 94 (172)
|..+++.|.+.|-+|...-..+..-...|..|-..|
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 445566666666666555444444444433333333
No 146
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=68.53 E-value=31 Score=28.65 Aligned_cols=67 Identities=33% Similarity=0.384 Sum_probs=45.0
Q ss_pred HHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRE-SARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 32 eRr~rR~lsNRE-SARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
.|-.=.-++||| |-+.+|.||+.-.+++. .|+... .-..++..|++++...+++|.+-.+++..+.+
T Consensus 92 yR~~LK~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~kR 159 (234)
T 3plt_A 92 YRVTLKSIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhHH
Confidence 344445688999 45777777776655553 343221 12356788999999999999888888866543
No 147
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=68.33 E-value=17 Score=31.41 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 044691 96 AQLGELTHRL 105 (172)
Q Consensus 96 aq~~eL~~rL 105 (172)
.++.+|..+|
T Consensus 40 ~~i~~l~~~i 49 (323)
T 1lwu_C 40 QFVTRLQQQL 49 (323)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 148
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=68.28 E-value=15 Score=22.28 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 79 IATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 79 ~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
.|..+...|..+|..|..++..|+.-|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444455556667777777766665554
No 149
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.24 E-value=34 Score=25.43 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 49 RMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 49 R~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
...-+.++.+|..+|..|+.+...-+ ........||..||.++..|...
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r-------~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQ-------HLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777777777766555443 33455677888888888876443
No 150
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=67.67 E-value=28 Score=24.22 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
+...+.....|+..+..|..+.+.|..++...+.-...|-++-.+|...|..+++-
T Consensus 30 l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~r 85 (89)
T 3bas_A 30 LAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666665555556666666666666666555543
No 151
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=67.38 E-value=22 Score=24.84 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESE 90 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~E 90 (172)
.+.+++.+-..|+.....|...+...+..-..+..|
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~E 49 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEARAERERARAE 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555554444444443333
No 152
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=67.33 E-value=48 Score=29.10 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
..+..+-..|+.++.+|..++..+.+-+.
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554
No 153
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=67.31 E-value=11 Score=22.01 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 80 ATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 80 l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
|.......++||-.|..+++.|.+.
T Consensus 6 lekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 6 LEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3444556688999999888888764
No 154
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=66.18 E-value=30 Score=28.40 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLH---SLNEIISFL 115 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~---~l~~il~~~ 115 (172)
+.=.|.|+..|+.+|..|..++..|. ....+|..+-.++..|.-+|- ++.+++..+
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li----~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L 125 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLM----DVARENDRLFDKTRRLVLDLLDATSLEDVVSTV 125 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 34456778888888888888877654 457889999999999988887 566666555
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.09 E-value=13 Score=33.00 Aligned_cols=53 Identities=13% Similarity=0.216 Sum_probs=31.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 65 QLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
.+...+..|..++..+++.+..|..|+..|+.+...+..++..+.+-++.++.
T Consensus 39 ~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 39 ALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444555555666666666666777777777777777777777777777654
No 156
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=65.68 E-value=48 Score=27.29 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 88 ESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 88 e~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
..|+..+++++++-++.+..+.+.-
T Consensus 191 ~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 191 RDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 157
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=65.52 E-value=37 Score=37.66 Aligned_cols=73 Identities=10% Similarity=0.135 Sum_probs=42.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 044691 37 RMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIA--------------TQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 37 R~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l--------------~q~~~~le~EN~~LRaq~~eL~ 102 (172)
....+-+.|...=..+++.+.+|+.+++.|+.+-+....+...+ ..-...|..|+.+-.+++.+|.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 34444455555556667777777777777766544433333322 2333455666666777777777
Q ss_pred HHHHHHH
Q 044691 103 HRLHSLN 109 (172)
Q Consensus 103 ~rL~~l~ 109 (172)
.++..|-
T Consensus 2098 ~~~~~L~ 2104 (3245)
T 3vkg_A 2098 TQMSTVV 2104 (3245)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 6666553
No 158
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=65.39 E-value=80 Score=28.59 Aligned_cols=77 Identities=21% Similarity=0.191 Sum_probs=48.9
Q ss_pred HhHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 044691 40 SNRESA-RRSRMRKQ-------KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIES-----------ENSVLRAQLGE 100 (172)
Q Consensus 40 sNRESA-RRSR~RKq-------~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~-----------EN~~LRaq~~e 100 (172)
.|-+.- +..+.|+- ..+-+|..+...++.+-..|+.+.+.+..++..+.. +-..|++++.+
T Consensus 48 ~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~ 127 (501)
T 1wle_A 48 AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGRE 127 (501)
T ss_dssp HSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHH
Confidence 566664 33333332 334445555666666666666666666666555432 33589999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 044691 101 LTHRLHSLNEIISFLD 116 (172)
Q Consensus 101 L~~rL~~l~~il~~~~ 116 (172)
|..+++.|...+..++
T Consensus 128 l~~~i~~l~~~~~~~~ 143 (501)
T 1wle_A 128 IRKQLTLLYPKEAQLE 143 (501)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988887775
No 159
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=65.11 E-value=7.4 Score=32.21 Aligned_cols=29 Identities=7% Similarity=0.164 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
+.+..++..+..||..+++++.+|++++.
T Consensus 151 e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 151 KSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp THHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444445555555544444443
No 160
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.81 E-value=25 Score=25.90 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSV 93 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~ 93 (172)
..-..+.++..|+.++.+|...+.........+..+|..
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~ 50 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQS 50 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 334445556666666666666555544444444444433
No 161
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=64.45 E-value=19 Score=21.00 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~ 81 (172)
|.+++..|.+|...|.-++..++
T Consensus 7 lkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 162
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=64.40 E-value=34 Score=23.94 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
|..++..|+-....+..|+..++.-...+..|+..+.
T Consensus 35 LI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 35 LIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444443
No 163
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=64.26 E-value=80 Score=28.59 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
..+..+-..|+.++.+|..++..+.+-+..
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777766665543
No 164
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=64.11 E-value=32 Score=30.65 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 86 NIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 86 ~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.+..+-..|+.++.+|..++..+.+-+..+
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666555555433
No 165
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=63.57 E-value=14 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 80 ATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 80 l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
|..+...|..+|..|..++..|+.-|.
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 334444555666666666666655444
No 166
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=63.55 E-value=37 Score=24.09 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
-.+.|..|+.+-..+..+...+..+...+.+.-.....+=+.++.++.++.+.+.+++..+.+.
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666566555555555555555666777777788888888887776554
No 167
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=63.08 E-value=25 Score=22.05 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQ 97 (172)
Q Consensus 85 ~~le~EN~~LRaq 97 (172)
..|+.||.-|+..
T Consensus 13 aslenenetlkkk 25 (49)
T 3he5_A 13 ASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhcccHHHHHh
Confidence 3444455544443
No 168
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=63.04 E-value=26 Score=30.23 Aligned_cols=35 Identities=9% Similarity=-0.018 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 81 TQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 81 ~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+..+...+.+-..|+..+..+..+|..|...|..+
T Consensus 18 e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 18 EQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555566666666665554444
No 169
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=62.71 E-value=31 Score=22.91 Aligned_cols=8 Identities=25% Similarity=0.190 Sum_probs=3.7
Q ss_pred HHHhHHHH
Q 044691 38 MISNRESA 45 (172)
Q Consensus 38 ~lsNRESA 45 (172)
..+||+-|
T Consensus 22 a~knr~Ea 29 (77)
T 3trt_A 22 AAKNLQEA 29 (77)
T ss_dssp HHHHHHHH
T ss_pred HHHhHHHH
Confidence 44455444
No 170
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.24 E-value=85 Score=27.85 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIES---ENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~---EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
|..+...+..+-..|+.+.+.+..+...+.. +-..|++++.+|..+++.|...+..++.
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKK 97 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443321 2356777778888888877777766653
No 171
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.19 E-value=54 Score=25.53 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
|..++.....+...|...+..-..+....+.++..+..++.+|+
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 92 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433333444444444444444443
No 172
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=61.62 E-value=22 Score=22.23 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 82 QHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 82 q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
+.+..++.|-..|...++.|..+|+.|
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777777777777777655
No 173
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=61.22 E-value=59 Score=25.69 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=36.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 37 RMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 37 R~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
.+..-=+.=|+.|.+-.+.+.+|+.++..|..|...+ ...+..+..||..|-..+..|...-.++.
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~-------k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHL-------KHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344444445555556666666666665555544444 44455566666666666666655544444
No 174
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.16 E-value=44 Score=30.30 Aligned_cols=58 Identities=16% Similarity=0.047 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIES---ENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~---EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
|..+...++.+-..|+.+.+.+..++..+.. +-..|.+++.+|..++..|...+..++
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443333322 124567777777777777766666554
No 175
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=60.91 E-value=14 Score=22.42 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044691 79 IATQHYMNIESENSVLRAQLG 99 (172)
Q Consensus 79 ~l~q~~~~le~EN~~LRaq~~ 99 (172)
....+...|+.+|..|..++.
T Consensus 17 syidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 17 NYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777877777664
No 176
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.59 E-value=33 Score=23.88 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 82 QHYMNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 82 q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
..+..|..++..|..++..|..+-..|..-|..
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444444444444444444433
No 177
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.78 E-value=43 Score=23.61 Aligned_cols=57 Identities=14% Similarity=0.244 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 41 NRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGE 100 (172)
Q Consensus 41 NRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~e 100 (172)
|-.||=-+=-+-|+- +..++...+..|..+..++.....+...|..|-..|+.++.+
T Consensus 14 eLQSALeaEIqAKQ~---i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQS---LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444443 344556666677777666665555444444444444444444
No 178
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=59.33 E-value=31 Score=26.44 Aligned_cols=48 Identities=15% Similarity=0.219 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
..|...++....+...|...+..-..+....+.++..+..++.+|+.-
T Consensus 35 ~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas 82 (135)
T 2e7s_A 35 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS 82 (135)
T ss_dssp HHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444555555555555555443
No 179
>3g20_A Type II secretion protein; general secretory pathway, major pilin, protein transport; HET: NHE; 1.78A {Escherichia coli O157} SCOP: d.24.1.3
Probab=59.30 E-value=26 Score=25.77 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcCCchhhhhhhh------------hcccCCCCCCCCCCccCcCCCC
Q 044691 92 SVLRAQLGELTHRLHSLNEIISFLDASNNNDDDENNGGAAAAIFEA------------TSMINEPAFDNFMNPLNLSYLN 159 (172)
Q Consensus 92 ~~LRaq~~eL~~rL~~l~~il~~~~~~~g~~~~~~~~~~~~~~~~~------------~~~~~~~~~d~~~~p~~~~~~~ 159 (172)
.+-+++..+++..|..+...|+.....+|.+....+|+. +-.+. +..+..+|.||+-+||++-+|.
T Consensus 14 ~~~kak~~~a~a~l~~i~~Ale~Y~ld~g~YP~t~qgL~--aLv~~p~~~~~p~~w~~g~Yl~~~P~DPwg~~y~Y~~pg 91 (123)
T 3g20_A 14 NKDKADRQKVMSDLVALESTLDMYRLDNNRYPTTEQGLR--ALVSKPTVQPEPRNYRQDGYIRRLPQDPWGGDYQLLNPG 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTGG--GGTSCCSSSSCCTTCCTTCSCSCCCBCTTSCBCEEESSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH--HHHhCcCCCcccccccCCCcccCCCCCCCCCCeEEecCC
Confidence 445666777777777777777766655565543222221 11110 2334455568888888887764
No 180
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=59.16 E-value=16 Score=29.29 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQI 73 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L 73 (172)
.++-+-..+..|+.+|..|
T Consensus 146 lid~~ld~~~~L~~~n~~L 164 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHL 164 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444333333
No 181
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=59.16 E-value=40 Score=23.03 Aligned_cols=48 Identities=8% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
+.+...+..|+.+...++..+....+.|..|..=.-.|-.+++..+.-
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555556666666666666666655543
No 182
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.48 E-value=25 Score=32.64 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 72 QIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISF 114 (172)
Q Consensus 72 ~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~ 114 (172)
+|+.++..|++.+......-++|+.-|.+++.+++.|+--|.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555566667777777777777777665543
No 183
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=58.22 E-value=47 Score=23.54 Aligned_cols=46 Identities=9% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
|..++..|+++...|..+|..+......+..+-...-.+...+..+
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~q 68 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQ 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333
No 184
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=58.20 E-value=38 Score=22.46 Aligned_cols=20 Identities=15% Similarity=0.233 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 94 LRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 94 LRaq~~eL~~rL~~l~~il~ 113 (172)
.+.++.+|+..+++|.--|+
T Consensus 54 ~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443
No 185
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=58.12 E-value=11 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSI 77 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l 77 (172)
..|++.|+.++..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888887776665543
No 186
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=57.66 E-value=58 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 77 INIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 77 l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
...+...+..|+..|..|+.++.++....
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~ 80 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDY 80 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555544444333
No 187
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.56 E-value=54 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044691 84 YMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 84 ~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
+.+.+.|...|+.++.+|+.+|.
T Consensus 13 ~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 13 CLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 188
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=56.88 E-value=14 Score=22.14 Aligned_cols=27 Identities=11% Similarity=0.118 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
+.|..+...|..+|..|..+++.|+.-
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 345556666677788888777766543
No 189
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=56.60 E-value=6.8 Score=25.31 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044691 87 IESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 87 le~EN~~LRaq~~eL~~rL~~l 108 (172)
|+.+|..|...++.|...+..|
T Consensus 29 lendnanlekdianlekdianl 50 (56)
T 3he4_A 29 LENDNANLEKDIANLEKDIANL 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccchHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 190
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=55.22 E-value=17 Score=21.69 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
+.|..+...|-.+|..|..++..|+.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455556666777777777766654
No 191
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.88 E-value=11 Score=21.19 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 044691 90 ENSVLRAQLGELT 102 (172)
Q Consensus 90 EN~~LRaq~~eL~ 102 (172)
.|..|+++++.|.
T Consensus 8 knarlkqeiaale 20 (28)
T 3ra3_B 8 KNARLKQEIAALE 20 (28)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 3444444444443
No 192
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=54.64 E-value=26 Score=20.92 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 79 IATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 79 ~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
.|..+...|..+|..|..++..|+.-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455556667777777777665443
No 193
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=54.61 E-value=43 Score=22.01 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
|.+-+.+|+.++..++.--..+..++..+.-....+..++..=+..+..|..++..+.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445666777777666544444444433333333333333332444555555555444
No 194
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=54.44 E-value=73 Score=24.67 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 43 ESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 43 ESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
+-|-|+=.+-+..+++|+.++..-+..+..+...+..+-..+..+.+.|-.|.-++..|.
T Consensus 94 E~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 94 EFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhh
No 195
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=53.62 E-value=87 Score=25.24 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESE 90 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~E 90 (172)
.+..|..++..+..+...+..++..+..+...+..+
T Consensus 91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~ 126 (256)
T 3na7_A 91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555544444444444444444333333
No 196
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=53.49 E-value=54 Score=22.83 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIES 89 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~ 89 (172)
+-+|..++..|+.|...|+..++.+..++..+..
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4456666666666666666665555444444433
No 197
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=53.14 E-value=44 Score=29.36 Aligned_cols=61 Identities=21% Similarity=0.174 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMN-IESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~-le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+-+|..+...+..+-..|+.+.+.+.++... -..+-..|++++.+|..+++.+...+..++
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKE 91 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444321 112345778888888888888877776664
No 198
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=53.12 E-value=73 Score=26.19 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
.+..|+.++++.+.|+..+..++...+++.
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777776666666555444433
No 199
>1t92_A General secretion pathway protein G; domain-swapping, zinc, pseudopilin, protein transport; 1.60A {Klebsiella pneumoniae} SCOP: d.24.1.3
Probab=52.66 E-value=31 Score=25.42 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044691 95 RAQLGELTHRLHSLNEIISFLDASNNNDDD 124 (172)
Q Consensus 95 Raq~~eL~~rL~~l~~il~~~~~~~g~~~~ 124 (172)
++++......|..|...|+....-+|-+..
T Consensus 6 ~Ak~~~a~adi~~l~~ALd~Y~lD~G~YPt 35 (116)
T 1t92_A 6 KADRQKVVSDLVALEGALDMYKLDNSRYPT 35 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 455666666677777777777655566654
No 200
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=52.32 E-value=55 Score=22.58 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL 105 (172)
...++++...+..|+.+...++..+....+.|..|..=...|-.+++..+.-|
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLL 79 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLL 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34556666677777777777777777777777777777777777777766544
No 201
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=52.26 E-value=1.2e+02 Score=27.02 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 70 NHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 70 N~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
...|..++..|++....-...-.+|+.-+..++.+++.|+.-|++-..
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~ 162 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIR 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666666666666666677888888888888888877765543
No 202
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=52.24 E-value=44 Score=21.49 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q 82 (172)
.++.|..+|..|..+...|...+..++.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666665555555555554443
No 203
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=50.74 E-value=70 Score=23.35 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 76 SINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 76 ~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
.+..+...+..++.+-..+|.++...-...+.|-.|
T Consensus 76 ~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv 111 (129)
T 3tnu_B 76 ALKDARNKLAELEEALQKAKQDMARLLREYQELMNT 111 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666555444444333
No 204
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=50.49 E-value=50 Score=25.97 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044691 82 QHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 82 q~~~~le~EN~~LRaq~~eL~ 102 (172)
.++.++..|-..|++++...+
T Consensus 113 akI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 113 AKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777666543
No 205
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=50.46 E-value=58 Score=22.32 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIE 88 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le 88 (172)
|...|..|..|+..|..++....+.+..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776666554
No 206
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=49.86 E-value=46 Score=20.97 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
++|.+|.+|+.--..|..++..|--. .++-...|+.++..|.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 45666666655544444444333222 2233344555554443
No 207
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=49.85 E-value=43 Score=23.61 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l 80 (172)
+.+.+...|+..|..|..++.+|
T Consensus 53 e~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 53 DLENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHH
Confidence 33444444444444444444333
No 208
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=49.79 E-value=54 Score=23.04 Aligned_cols=32 Identities=3% Similarity=0.141 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 75 TSINIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 75 ~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
..|..|+.++..+..||..|..++..|...+.
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~ 87 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555554444443
No 209
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=49.68 E-value=41 Score=28.47 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 044691 60 MAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNNN 121 (172)
Q Consensus 60 e~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g~ 121 (172)
+.+++.|+.+++.|..++..+++....+...| ..+++.|+.-+..++..-|+
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n----------~~rl~~Lqk~~~~~~~~LGl 235 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN----------AERLKRLQKSADLYKDRLGL 235 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HTTTTTHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh----------HHHHHHHHHHHHHHHHHcce
Confidence 44566666666666666666655444333322 33344455555556555554
No 210
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=49.42 E-value=95 Score=28.49 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNI----ESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~l----e~EN~~LRaq~~eL~~rL~~l~ 109 (172)
-+.+..++-+.+++||..+++++...+..|.+- ..+...-.+++++...+|...+
T Consensus 35 ~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe 93 (497)
T 3iox_A 35 AVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYE 93 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666677777777777777765555432 2333333555555555555444
No 211
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=49.13 E-value=77 Score=25.93 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDASNNND 122 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~~~g~~ 122 (172)
..++..|...+..+..|.+.|+.+..+|+.-...+..++.+++...|..
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~ 162 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEP 162 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555666666667777777777777777777777777777778777754
No 212
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=48.86 E-value=70 Score=22.77 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 74 ITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 74 ~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.++...+ ++...|+.++..|..++..|...+..+..-++.+
T Consensus 41 ~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 41 SCRYKRV-QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 3346778888888888888877777766666555
No 213
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=48.79 E-value=33 Score=22.05 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIES 89 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~ 89 (172)
.-..||.-|..|+..|..|...+..+...+..|+.
T Consensus 18 enaklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 33457777888888888888777777666666554
No 214
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=48.56 E-value=62 Score=22.14 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNIE 88 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~le 88 (172)
+|...|..|..|+..|..++....+.+..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888877776654
No 215
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=48.52 E-value=79 Score=25.79 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=19.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 64 AQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 64 ~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL 101 (172)
.+|+.+-.....+.+.|+..+..+.+||+.|+..+..|
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 34444444444455555555555555555555554444
No 216
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=47.99 E-value=1.1e+02 Score=27.57 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=17.3
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 88 ESE-NSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 88 e~E-N~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
..+ -..|+.++.+|..++..+.+-+..+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5666677777777777666665433
No 217
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=47.71 E-value=16 Score=27.35 Aligned_cols=21 Identities=14% Similarity=0.071 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQLGELTHRL 105 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL 105 (172)
..|..|+..|+.++.+|+.++
T Consensus 35 ~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 35 ERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 218
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=47.20 E-value=54 Score=25.04 Aligned_cols=37 Identities=27% Similarity=0.170 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 81 TQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 81 ~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
......++..|..|+.++.+-...|.+++..+..++.
T Consensus 95 r~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~ 131 (135)
T 2e7s_A 95 RMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKK 131 (135)
T ss_dssp THHHHHHHHHHHHHHHTTTHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888887777777777766553
No 219
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.12 E-value=0.31 Score=35.36 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=18.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQ 53 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq 53 (172)
-|..||.-+||.+|+++|.||.
T Consensus 65 IrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 65 IRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHhhhhHHHHHHcchhhc
Confidence 3667888999999999999874
No 220
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=46.81 E-value=54 Score=22.01 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 46 RRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 46 RRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
|+-|..=...++.|..-|-.+......=..-+......+..|..++..|..++..|+.
T Consensus 21 r~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 21 RKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333455566666665443111111122333445556667777777777766654
No 221
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=46.06 E-value=43 Score=19.82 Aligned_cols=24 Identities=8% Similarity=-0.078 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 80 ATQHYMNIESENSVLRAQLGELTH 103 (172)
Q Consensus 80 l~q~~~~le~EN~~LRaq~~eL~~ 103 (172)
|..+...+..+|..|..++..|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333444445556666655555543
No 222
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=45.31 E-value=91 Score=23.08 Aligned_cols=72 Identities=8% Similarity=0.099 Sum_probs=38.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 32 QRKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 32 eRr~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
++...-|..-..-.++.-.++.+-+ .+|.-|+.+..-.......=...-..+..|...|..++..|..++..
T Consensus 37 EeaL~~Kq~~idelk~ei~q~~~~l----E~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 37 EEALVAKQELIDKLKEEAEQHKIVM----ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444333333311 24555555555555555555555566677777788888877776654
No 223
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=45.25 E-value=1.7e+02 Score=26.47 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESEN-----SVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN-----~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+..+...+.++..+.....+...+++........+...+ ..|+..+..|..+|+.|...+..+..
T Consensus 127 q~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 127 DNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 224
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=44.21 E-value=85 Score=28.80 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYM 85 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~ 85 (172)
+-++.++..+++|..+..++..++++..
T Consensus 31 ~Ye~~~ae~~a~n~~i~aeNeaikkrNa 58 (497)
T 3iox_A 31 AYEAAVAANNAANAALTAENTAIKKRNA 58 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 225
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.91 E-value=32 Score=29.10 Aligned_cols=30 Identities=17% Similarity=0.159 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQ 82 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q 82 (172)
.+.++.|+.+.+.|+.|-..|......+..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456777777777777777777665555444
No 226
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=43.89 E-value=58 Score=20.42 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 044691 94 LRAQLGE 100 (172)
Q Consensus 94 LRaq~~e 100 (172)
.+..+..
T Consensus 45 ~~~~I~~ 51 (60)
T 3htk_A 45 IRDEVIK 51 (60)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 227
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=43.07 E-value=84 Score=22.08 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 89 SENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 89 ~EN~~LRaq~~eL~~rL~~l 108 (172)
.|-..|+.++..--..+.-|
T Consensus 54 ~El~~Lq~qLe~kd~ei~rL 73 (81)
T 3qh9_A 54 AEVAQLQEQVALKDAEIERL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44444444444444433333
No 228
>3gn9_A Type II secretory pathway, pseudopilin EPSG; general secretory pathway, major pilin, protein transport, C methylation; 1.86A {Vibrio vulnificus} PDB: 3fu1_A
Probab=42.84 E-value=46 Score=24.47 Aligned_cols=30 Identities=10% Similarity=0.144 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044691 95 RAQLGELTHRLHSLNEIISFLDASNNNDDD 124 (172)
Q Consensus 95 Raq~~eL~~rL~~l~~il~~~~~~~g~~~~ 124 (172)
++++..++..|+.|...|+....-+|-+..
T Consensus 8 ~Ak~~~a~~di~~l~~ALd~Y~lD~G~YPt 37 (115)
T 3gn9_A 8 KADQQKAITDIVALENALDMYKLDNSVYPT 37 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 566777777788888888877666676654
No 229
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=42.48 E-value=14 Score=23.84 Aligned_cols=22 Identities=9% Similarity=0.219 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQI 73 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L 73 (172)
+..+++.|+.+|..|+.....|
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888887654443
No 230
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=42.22 E-value=1.6e+02 Score=26.54 Aligned_cols=22 Identities=18% Similarity=0.216 Sum_probs=15.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHh
Q 044691 95 RAQ-LGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 95 Raq-~~eL~~rL~~l~~il~~~~ 116 (172)
.++ +.+|..++..|...+..++
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~ 131 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLE 131 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666 7777777777777776664
No 231
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=42.18 E-value=11 Score=31.09 Aligned_cols=14 Identities=7% Similarity=0.176 Sum_probs=5.3
Q ss_pred HHHhHHHHHHHHHH
Q 044691 66 LRKDNHQIITSINI 79 (172)
Q Consensus 66 L~~EN~~L~~~l~~ 79 (172)
|..||++|+.++..
T Consensus 24 l~~eN~~Lk~e~~~ 37 (255)
T 2j5u_A 24 TYTENQHLKERLEE 37 (255)
T ss_dssp --CTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 232
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=42.12 E-value=83 Score=21.74 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhh
Q 044691 86 NIESENSVLRAQL-------GELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 86 ~le~EN~~LRaq~-------~eL~~rL~~l~~il~~~~~ 117 (172)
.++.+=..||..+ .+|..++.+|.+-|.++..
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555544 4577788888888877764
No 233
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=41.75 E-value=1.3e+02 Score=23.93 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNH 71 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~ 71 (172)
+-++.++.||.++...+.++.
T Consensus 139 kLqkeiD~LEDeL~~eKek~k 159 (175)
T 3mud_A 139 KNEKSIDDLEEKVAHAKEENL 159 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443333333333
No 234
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=41.37 E-value=90 Score=21.92 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 044691 95 RAQLGELTHRLH 106 (172)
Q Consensus 95 Raq~~eL~~rL~ 106 (172)
+.++..|..+|.
T Consensus 94 ~~q~~~L~~kf~ 105 (127)
T 1ez3_A 94 KTQHSTLSRKFV 105 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 235
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=40.95 E-value=87 Score=23.19 Aligned_cols=26 Identities=8% Similarity=0.180 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 91 NSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 91 N~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
-..|.+++.+|...+..|...+..++
T Consensus 104 ~~~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 104 EANVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 236
>2kep_A General secretion pathway protein G; methylation, transport, transport protein; NMR {Pseudomonas aeruginosa}
Probab=40.61 E-value=48 Score=24.03 Aligned_cols=30 Identities=7% Similarity=0.110 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 044691 95 RAQLGELTHRLHSLNEIISFLDASNNNDDD 124 (172)
Q Consensus 95 Raq~~eL~~rL~~l~~il~~~~~~~g~~~~ 124 (172)
++++......|..|...|+....-+|-+..
T Consensus 6 ~Ak~~~a~a~i~~l~~Al~~Y~lD~G~YPt 35 (110)
T 2kep_A 6 QAKVTVAKGDIKAIAAALDMYKLDNFAYPS 35 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 345555556666666666666555565553
No 237
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.23 E-value=1e+02 Score=22.24 Aligned_cols=17 Identities=6% Similarity=0.159 Sum_probs=8.6
Q ss_pred HHHHhHHHHHHHHHHHH
Q 044691 65 QLRKDNHQIITSINIAT 81 (172)
Q Consensus 65 ~L~~EN~~L~~~l~~l~ 81 (172)
..+.++..+..++..|+
T Consensus 44 ~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 44 KAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445555555555554
No 238
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.71 E-value=27 Score=23.57 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQI 73 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L 73 (172)
.|+..|+.++..|+.++..|
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 239
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=39.48 E-value=56 Score=18.95 Aligned_cols=24 Identities=13% Similarity=0.326 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 81 TQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 81 ~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
+.+.+.|.+.|-.-+..+..|+++
T Consensus 7 kkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 7 KKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHh
Confidence 334444445555555555555544
No 240
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=39.40 E-value=77 Score=25.29 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
.+.+|..++.+|+.+|..|+.+.+..
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444433
No 241
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=39.03 E-value=99 Score=21.71 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=31.0
Q ss_pred HHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVA---QLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 57 eeLe~qv~---~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
..|+.+|. .+..|...++..+-.+..++...+..|..|..++..|..++..|
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 23445555555555666666667777777777777666666653
No 242
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=38.80 E-value=2.4e+02 Score=26.17 Aligned_cols=49 Identities=4% Similarity=-0.021 Sum_probs=24.9
Q ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 69 DNHQIITSIN-IATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 69 EN~~L~~~l~-~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
+|.....++. .|++++..|+.+-..--.++..|+..|..+..-|+.|+.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 555555555443322225556666666666666666654
No 243
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=37.70 E-value=48 Score=22.81 Aligned_cols=34 Identities=21% Similarity=0.250 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 76 SINIATQHYMNIESENSVLRAQLGELTHRLHSLN 109 (172)
Q Consensus 76 ~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~ 109 (172)
++.-+..-+..-++-|..|-.++.-|...++-++
T Consensus 30 ~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlE 63 (71)
T 3bbp_D 30 SADHLNGLLRETEATNAILMEQIKLLKSEIRRLE 63 (71)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555666666666665555555444
No 244
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=37.36 E-value=80 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQI 73 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L 73 (172)
++++|.+++.|+....++
T Consensus 8 vd~~EErIs~le~rleei 25 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEI 25 (233)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555554444443
No 245
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=37.25 E-value=76 Score=23.48 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQII 74 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~ 74 (172)
.+.+|+.+|+.+++.+..|+
T Consensus 5 e~~~l~~qi~~~ekr~~RLK 24 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLK 24 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444443
No 246
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.99 E-value=1.3e+02 Score=22.30 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITS----INIATQHYMNIESENSVLRAQ 97 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~----l~~l~q~~~~le~EN~~LRaq 97 (172)
.++.|..+|..|+.+...+..+ +..+..++..|++|...=+.+
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444322 334445555555555554443
No 247
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=36.98 E-value=39 Score=23.26 Aligned_cols=20 Identities=10% Similarity=0.204 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 82 QHYMNIESENSVLRAQLGEL 101 (172)
Q Consensus 82 q~~~~le~EN~~LRaq~~eL 101 (172)
.-...|..+|..|+.++..|
T Consensus 43 atnarL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 43 ATNAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555444
No 248
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.95 E-value=62 Score=28.53 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
.+|..++..|+.+...|..+... +..+...|+.++..++.+++.+..
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~-------l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDY-------IKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45555666666655555544433 334445555666666666655543
No 249
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=36.86 E-value=1.1e+02 Score=22.60 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQH 83 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~ 83 (172)
+|..+|..|..++..|..++..+..+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 250
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=36.83 E-value=76 Score=21.45 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIE 88 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le 88 (172)
+.+++..++..|+.|....-.++..+.-.++..+
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e 50 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENE 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655555555555444443
No 251
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=36.62 E-value=2.2e+02 Score=25.10 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 72 QIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 72 ~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
.+..++..++......+.+-..|+..+..+..+|..|...|..+..
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3444444444444445556666777777777777777777766643
No 252
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.60 E-value=76 Score=19.71 Aligned_cols=32 Identities=9% Similarity=0.281 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNIE 88 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le 88 (172)
++|-.++...-.|......+|..++.+...|+
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666666655555554
No 253
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=36.19 E-value=1.1e+02 Score=21.46 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 044691 96 AQLGELTHRLH 106 (172)
Q Consensus 96 aq~~eL~~rL~ 106 (172)
+++..|+..|.
T Consensus 54 ~El~~Lq~qLe 64 (81)
T 3qh9_A 54 AEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333444333
No 254
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=36.12 E-value=1.7e+02 Score=23.65 Aligned_cols=37 Identities=5% Similarity=0.015 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLR 95 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LR 95 (172)
....+-+..+||-.|..+...+++.+.-...=..+|-
T Consensus 120 ~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLD 156 (214)
T 2cly_A 120 KRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLD 156 (214)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444466777777766666665555444444553
No 255
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=35.96 E-value=82 Score=21.26 Aligned_cols=24 Identities=8% Similarity=0.324 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQIIT 75 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L~~ 75 (172)
|...+.+|+..+..-..++..|+.
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~ 46 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKR 46 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666676665555444444443
No 256
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.59 E-value=1.2e+02 Score=22.43 Aligned_cols=30 Identities=10% Similarity=0.359 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 81 TQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 81 ~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
.++...++.+-..|......|..++..+..
T Consensus 87 ~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 87 KKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444443333
No 257
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=35.38 E-value=1e+02 Score=20.92 Aligned_cols=52 Identities=6% Similarity=0.158 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHR 104 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~r 104 (172)
...+.++...+..|+.+-..++..+....+.|..|..=.-.|-.+++..+.-
T Consensus 25 ~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 25 AVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3445556666666666666666666666666666666666666666655543
No 258
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=35.26 E-value=1.2e+02 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHYMNI----ESENSVLRAQLGE 100 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~~~l----e~EN~~LRaq~~e 100 (172)
++.+.++..--.|-..++..+-.|...+.++ +.|-..||.++..
T Consensus 39 ~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 39 KDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555556666666665555544 3455555555543
No 259
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=34.53 E-value=1.4e+02 Score=25.52 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 93 VLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il 112 (172)
.|..|+..+..++.....++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~ 304 (426)
T 1lrz_A 285 NLQQQLDANEQKIEEGKRLQ 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 260
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.06 E-value=93 Score=19.93 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=10.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
++.+|..+.+.|..++..|....
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV 27 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDA 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 261
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=33.73 E-value=16 Score=26.89 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=15.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 35 RKRMISNRESARRSRMRKQKHLDDLMAQVAQ 65 (172)
Q Consensus 35 ~rR~lsNRESARRSR~RKq~~leeLe~qv~~ 65 (172)
..|+...-.+-|+-|.+=...+.+|..-|-.
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~ 55 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPK 55 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555566666666666666666665543
No 262
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=33.67 E-value=2.1e+02 Score=23.92 Aligned_cols=19 Identities=16% Similarity=-0.022 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhcCCCCC
Q 044691 105 LHSLNEIISFLDASNNNDD 123 (172)
Q Consensus 105 L~~l~~il~~~~~~~g~~~ 123 (172)
|-.+.-|+--+.-.+|+|+
T Consensus 306 LTiit~IflP~T~IaGiyG 324 (363)
T 2iub_A 306 LTIIATIFMPLTFIAGIYG 324 (363)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3334444444456688876
No 263
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.92 E-value=47 Score=29.38 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044691 85 MNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 85 ~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
..++.|+..|+.++.++..+++.
T Consensus 49 ~r~~~e~~~~~~~~~~~~~~i~~ 71 (434)
T 4b4t_M 49 QRLSHENNVMLEKIKDNKEKIKN 71 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555544
No 264
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.80 E-value=1.9e+02 Score=25.26 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 87 IESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 87 le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+.++-..|+.++.+|..++..+.+-+..+
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666555443
No 265
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=32.37 E-value=2e+02 Score=23.23 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRK 68 (172)
Q Consensus 56 leeLe~qv~~L~~ 68 (172)
++.|+.++..|+.
T Consensus 68 l~~l~~e~~el~d 80 (213)
T 4ani_A 68 IAELEAKLSEMEH 80 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 266
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=32.31 E-value=97 Score=19.61 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 044691 43 ESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITS 76 (172)
Q Consensus 43 ESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~ 76 (172)
|-|-||=.|-++.+++||.++..-+..+..+...
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4455555555666666665555444444444433
No 267
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.29 E-value=76 Score=18.40 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044691 90 ENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 90 EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+-..|.+-+.+|+.|+..|++.+
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555554443
No 268
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=32.03 E-value=1.2e+02 Score=20.73 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHRLH 106 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~rL~ 106 (172)
..+...+..++.+-..+|+++.......+
T Consensus 31 ~~~q~~i~~lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 31 DTSRRLLAEKEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555544433333
No 269
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=31.94 E-value=1.1e+02 Score=20.16 Aligned_cols=61 Identities=18% Similarity=0.253 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+.+++.++.++...-..+..++............+....+-..-+...+..++++++..++
T Consensus 6 i~~~e~kI~~~~~~~~~~l~~~~~~~~~l~~~~~el~~~~i~~lE~~N~~~s~~~li~~~~ 66 (73)
T 3htk_B 6 IKDIDDQIQQLLLKQRHLLSKMASSMKSLKNCQKELISTQILQFEAQNMDVSMNDVIGFFN 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHhHHHHHHHHHH
Confidence 4456666666665555555555555555555444444444444455566667777776664
No 270
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=31.88 E-value=1.8e+02 Score=22.65 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 45 ARRSRMRKQKHLDDLMAQVAQLRKD-------NHQIITSINIATQHYMNIESENSVLRAQLGELT 102 (172)
Q Consensus 45 ARRSR~RKq~~leeLe~qv~~L~~E-------N~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~ 102 (172)
+.+-|.+|+-..+....++..|+.. -.....++...++.|..+ |..|+.++..|-
T Consensus 149 ~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~l---n~~L~~eLp~l~ 210 (251)
T 2fic_A 149 RIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEM---NVDLQEELPSLW 210 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3334444444455444555555422 123444555555555544 888888887763
No 271
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=31.74 E-value=45 Score=26.88 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIIT 75 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~ 75 (172)
..+.+|+++..+|++||+.|.+
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666655554
No 272
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=31.37 E-value=84 Score=21.21 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 83 HYMNIESENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 83 ~~~~le~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
....|+.++..=.+++.+|+..|..+.+|+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555556666666666666654
No 273
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=31.19 E-value=1.8e+02 Score=22.24 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 044691 98 LGELTHRLHSLNEIIS 113 (172)
Q Consensus 98 ~~eL~~rL~~l~~il~ 113 (172)
+.....++..++.+.+
T Consensus 154 l~~~~~~v~~l~~~~~ 169 (210)
T 3pdy_A 154 LELKEKKIKELQNAGD 169 (210)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3333334444443333
No 274
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.10 E-value=3.1e+02 Score=25.06 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 70 NHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 70 N~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
...|..++..+++....-..--.+|+.-+..++-+++.|+.-|..-
T Consensus 113 S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 113 STELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777776666666666778888888888888888777654
No 275
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=30.86 E-value=37 Score=24.86 Aligned_cols=17 Identities=24% Similarity=0.263 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhHHHHHH
Q 044691 31 DQRKRKRMISNRESARR 47 (172)
Q Consensus 31 deRr~rR~lsNRESARR 47 (172)
-||++|-.+..+-.+=+
T Consensus 34 ~ERrRR~~In~~~~~L~ 50 (118)
T 4ati_A 34 IERRRRFNINDRIKELG 50 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666656666665533
No 276
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=30.71 E-value=2.1e+02 Score=22.94 Aligned_cols=35 Identities=14% Similarity=0.125 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYM 85 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~ 85 (172)
.-+++...|..++..|+.+...|..++..+...-.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~ 170 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKE 170 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777766655433
No 277
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=30.67 E-value=30 Score=25.69 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLG 99 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~ 99 (172)
+.|..++..|.-||..||.++.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666777777776664
No 278
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.10 E-value=90 Score=19.29 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 89 SENSVLRAQLGELTHRLHSLNEIIS 113 (172)
Q Consensus 89 ~EN~~LRaq~~eL~~rL~~l~~il~ 113 (172)
.-...|..++..|..||..|.+.++
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555543
No 279
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=30.00 E-value=1.3e+02 Score=20.37 Aligned_cols=37 Identities=14% Similarity=0.192 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESE 90 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~E 90 (172)
..+..|+.++.+++.+-.....+...|-.--..|+.|
T Consensus 12 ~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~E 48 (74)
T 2xv5_A 12 RLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDME 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333333333333333333333
No 280
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.90 E-value=2.2e+02 Score=23.08 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNI-----------------ESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~l-----------------e~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
+..+..++.++..++.+......++...+..+... +.+-...++++..+..++..+..-++.+
T Consensus 69 ~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a 148 (369)
T 4dk0_A 69 INTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTA 148 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred h
Q 044691 116 D 116 (172)
Q Consensus 116 ~ 116 (172)
+
T Consensus 149 ~ 149 (369)
T 4dk0_A 149 E 149 (369)
T ss_dssp H
T ss_pred H
No 281
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=29.37 E-value=1.8e+02 Score=21.73 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 82 QHYMNIESENSVLRAQLGELTHRLHSLNEIISFL 115 (172)
Q Consensus 82 q~~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~ 115 (172)
.+|..|..+=..++.+ |-..+.....||..+
T Consensus 71 ~eY~~L~KkYk~~~~~---Ld~eI~~qe~iI~nF 101 (119)
T 2avr_X 71 SQYQELASKYEDALKK---LEAEMEQQKAVISDF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3444444443333332 333344444444433
No 282
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=28.99 E-value=1.6e+02 Score=23.98 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 72 QIITSINIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 72 ~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
+|+..+......|..|+.--+.|+++...|+.+|+.|
T Consensus 34 ~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 34 QLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444443
No 283
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=28.75 E-value=1.9e+02 Score=21.88 Aligned_cols=81 Identities=11% Similarity=0.176 Sum_probs=45.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 044691 34 KRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIE-------SENSVLRAQLGELTHRLH 106 (172)
Q Consensus 34 r~rR~lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le-------~EN~~LRaq~~eL~~rL~ 106 (172)
|.++.+-||.-+-- ..++.|+.++...+.-...--.....+.+++..++ ..-.....++.+|...|.
T Consensus 38 R~~k~lE~r~~~de------Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~ 111 (147)
T 2b9c_A 38 RGMKVIESRAQKDE------EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELK 111 (147)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccH------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776443 45667777777666544444444444444444444 444444555566666666
Q ss_pred HHHHHHHHHhhcCC
Q 044691 107 SLNEIISFLDASNN 120 (172)
Q Consensus 107 ~l~~il~~~~~~~g 120 (172)
.+..-+..++.+.+
T Consensus 112 ~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 112 TVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHhHH
Confidence 66666666665444
No 284
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=28.60 E-value=1.1e+02 Score=22.14 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 044691 89 SENSVLRAQLGELTHR 104 (172)
Q Consensus 89 ~EN~~LRaq~~eL~~r 104 (172)
.++..|+.++..|..+
T Consensus 96 ~~~~~L~~~i~~Le~e 111 (117)
T 3kin_B 96 EKNKALKSVIQHLEVE 111 (117)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444333
No 285
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=28.19 E-value=1.5e+02 Score=23.08 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 82 QHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 82 q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
..|.++.++-..||.++.+++..+...
T Consensus 100 P~Yak~~a~~~q~~~d~~~~~~~~~kA 126 (158)
T 3tul_A 100 PGYAQAEAAVEQAGKEATEAKEALDKA 126 (158)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666665543
No 286
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.15 E-value=1.8e+02 Score=21.38 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 044691 98 LGELTHRLHSLNEII 112 (172)
Q Consensus 98 ~~eL~~rL~~l~~il 112 (172)
+..|+.+|..|...|
T Consensus 84 Vsalq~KiaeLKrqL 98 (107)
T 2k48_A 84 VSTLETKLGELKRQL 98 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444554444444
No 287
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=28.15 E-value=1.4e+02 Score=20.28 Aligned_cols=36 Identities=8% Similarity=0.114 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESE 90 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~E 90 (172)
.+.+++.+-..|+.....|...+...+..-..+..|
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554444444333
No 288
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=27.87 E-value=1e+02 Score=22.90 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQLGELTHRLHS 107 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~ 107 (172)
|-.+...|+.+...|..++..+++. ..++..|.. .++..|-.+.+.
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa-~k~~~~~~~--~eL~~LI~KWr~ 50 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETA-RKVEAKNED--KDLQTLIQKWKN 50 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcH--HHHHHHHHHHHH
Confidence 3444444555555555555544433 233344432 456666666663
No 289
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=27.44 E-value=2.9e+02 Score=23.65 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Q 044691 49 RMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIES----------------ENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 49 R~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~----------------EN~~LRaq~~eL~~rL~~l~~ 110 (172)
|.-+.++++.|..+...+...-..+.-.+..+...|+.+.. +-..++.+..++...|..+..
T Consensus 219 raARE~rle~L~~ere~~~e~~a~~afd~qk~qRl~q~~~~fv~~hl~vaF~~dPe~~l~~~~~~~~~~~r~l~~~~~ 296 (302)
T 3ibp_A 219 RAARESRIESLHAEREVLSERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELERALSNHEN 296 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSCCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
No 290
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.32 E-value=70 Score=28.27 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 87 IESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 87 le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
+..|+..|..+...+..+++...+-+
T Consensus 44 l~~e~~r~~~e~~~~~~~~~~~~~~i 69 (434)
T 4b4t_M 44 FRSELQRLSHENNVMLEKIKDNKEKI 69 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 291
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.10 E-value=1.5e+02 Score=20.12 Aligned_cols=32 Identities=6% Similarity=0.083 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 79 IATQHYMNIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 79 ~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
.+...+..++.+-..+|.++.......+.|-.
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Lln 61 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARHLREYQDLLN 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666555444444433
No 292
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=27.02 E-value=1.7e+02 Score=20.63 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIATQHY-----MNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l~q~~-----~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
+.|+.+++.|+.+-..|..++..+..++ .....++-.|--+-.++.+--+.|-..++...
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 4455666666666555555555554322 22333444444445555555555555555444
No 293
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=26.95 E-value=31 Score=25.06 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044691 51 RKQKHLDDLMAQVAQLR 67 (172)
Q Consensus 51 RKq~~leeLe~qv~~L~ 67 (172)
.|+..+++|..++.+++
T Consensus 35 ~KQ~~ideLKe~i~q~~ 51 (96)
T 3fx0_A 35 AKQEVIDKLKEEAEQHK 51 (96)
T ss_dssp TTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36667777776666665
No 294
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.63 E-value=1.4e+02 Score=19.58 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 044691 59 LMAQVAQLRKDNHQIITSI 77 (172)
Q Consensus 59 Le~qv~~L~~EN~~L~~~l 77 (172)
|..+|..|+.||..|...+
T Consensus 15 LkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555544433
No 295
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.46 E-value=1.9e+02 Score=21.06 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHRLHSL 108 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l 108 (172)
..+...+..++.+-..+|.++...-...+.|
T Consensus 80 ~~~q~~i~~lE~eL~~~r~em~~ql~EYq~L 110 (131)
T 3tnu_A 80 AQIQEMIGSVEEQLAQLRCEMEQQNQEYKIL 110 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555444444333
No 296
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=26.14 E-value=1.5e+02 Score=19.79 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 93 VLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il 112 (172)
.++.++..|..++..|...+
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~ 101 (118)
T 3uul_A 82 EIQEQMTLLNARWEALRVES 101 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555444433
No 297
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=25.84 E-value=1.3e+02 Score=22.88 Aligned_cols=10 Identities=20% Similarity=0.584 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 044691 97 QLGELTHRLH 106 (172)
Q Consensus 97 q~~eL~~rL~ 106 (172)
++.+|..++.
T Consensus 22 ~~~~~~~~~~ 31 (192)
T 2gkw_A 22 RLADMDLRFQ 31 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 298
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=25.76 E-value=55 Score=23.48 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 86 NIESENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 86 ~le~EN~~LRaq~~eL~~rL~~l~~ 110 (172)
.|+.+...|+.++..|+.++..|.+
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455555555555555544443
No 299
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=25.42 E-value=2.2e+02 Score=21.46 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Q 044691 56 LDDLMAQVAQLRK-DNHQIITSINIATQHYMNIESENSVL---RAQLGELTHRLHSLNEIISFLDAS 118 (172)
Q Consensus 56 leeLe~qv~~L~~-EN~~L~~~l~~l~q~~~~le~EN~~L---Raq~~eL~~rL~~l~~il~~~~~~ 118 (172)
++.|+.++..|.. +...+...+.....+-. ..||... +.+...+..|+..|+..|...+..
T Consensus 11 ~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GD--lsENaeY~aak~~q~~~e~rI~~L~~~L~~A~vi 75 (158)
T 2p4v_A 11 YEKLKQELNYLWREERPEVTKKVTWAASLGD--RSENADYQYNKKRLREIDRRVRYLTKCMENLKIV 75 (158)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHSC--TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhCCC--cccchhHHHHHHHHHHHHHHHHHHHHHHhhCeec
Confidence 4556666666643 44445444443322111 1244422 666777888899999988877643
No 300
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=24.50 E-value=2.4e+02 Score=21.63 Aligned_cols=23 Identities=9% Similarity=0.095 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITS 76 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~ 76 (172)
+-+.+|..++.++..|-++|.-+
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq 51 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQE 51 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 301
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.44 E-value=1.9e+02 Score=20.48 Aligned_cols=64 Identities=6% Similarity=0.122 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 53 QKHLDDLMAQVAQLRKDNHQIITSINIATQH-----YMNIESENSVLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 53 q~~leeLe~qv~~L~~EN~~L~~~l~~l~q~-----~~~le~EN~~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
++.+++|+.++.+....-..|..-+....+. -..++.+-......+..|+..+..+...+..++
T Consensus 21 ~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 21 QQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557777777777777666665544443211 012234444445555666666666666665554
No 302
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.36 E-value=2.2e+02 Score=25.29 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMNIESENSVLRAQL 98 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~EN~~LRaq~ 98 (172)
++.++|+.++.-|+.....-...|..|+..+..+..+=..|...+
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777766544433355555555555444444444333
No 303
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.34 E-value=1.1e+02 Score=17.50 Aligned_cols=9 Identities=33% Similarity=0.361 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 044691 59 LMAQVAQLR 67 (172)
Q Consensus 59 Le~qv~~L~ 67 (172)
|+.+.+.|+
T Consensus 6 lekkcaale 14 (31)
T 3ljm_A 6 LEKKCAALE 14 (31)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 304
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=24.18 E-value=1.6e+02 Score=19.41 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 044691 58 DLMAQVAQLRKDNHQIITSINIATQHYMNI 87 (172)
Q Consensus 58 eLe~qv~~L~~EN~~L~~~l~~l~q~~~~l 87 (172)
+|+.-..++......|...+..|......|
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 305
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=23.78 E-value=2.7e+02 Score=21.87 Aligned_cols=13 Identities=31% Similarity=0.276 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 044691 88 ESENSVLRAQLGE 100 (172)
Q Consensus 88 e~EN~~LRaq~~e 100 (172)
+.+-..|...+..
T Consensus 69 e~~~~~L~~~i~~ 81 (174)
T 2p22_A 69 EQTMHSLNAQIDV 81 (174)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 306
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=23.23 E-value=2e+02 Score=20.22 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQII 74 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~ 74 (172)
.++.+..++..|+.+|..|.
T Consensus 46 ~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 46 EIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555543
No 307
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=23.21 E-value=1.9e+02 Score=20.12 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 044691 54 KHLDDLMAQVAQLRKDNHQIITSINIATQHYMN 86 (172)
Q Consensus 54 ~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~ 86 (172)
+.+.+|...|..|++|....-.++..+.--|+.
T Consensus 8 ~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~ 40 (82)
T 3tq7_B 8 QQLVDLKLTVDGLEKERDFYFSKLRDIELICQE 40 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777777777776666655544444
No 308
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=22.46 E-value=45 Score=23.75 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=13.2
Q ss_pred CCCCCCccCcCCCCccccc
Q 044691 146 FDNFMNPLNLSYLNQPIMA 164 (172)
Q Consensus 146 ~d~~~~p~~~~~~~qpi~a 164 (172)
.|+.+.||+.|-. ||-.|
T Consensus 4 vDp~lepw~hPgs-qP~T~ 21 (86)
T 1tac_A 4 VDPNIEPWNHPGS-QPKTA 21 (86)
T ss_dssp SSSSSCCCCCCSS-STTTC
T ss_pred cCCCCCcccCCCC-CCCCC
Confidence 4999999996643 66544
No 309
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.44 E-value=1.9e+02 Score=22.83 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 044691 55 HLDDLMAQVAQLRKDNHQIITSINIATQHYMNIES 89 (172)
Q Consensus 55 ~leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le~ 89 (172)
-+..-+..|+.|++++..|..++...+.++..+..
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~ 163 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQ 163 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666665555554444433
No 310
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.39 E-value=1.8e+02 Score=19.40 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 73 IITSINIATQHYMNIESENSVLRAQLGELTHRLHSLNEI 111 (172)
Q Consensus 73 L~~~l~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~i 111 (172)
++..+..-.-+.+.|..-|..|-.++.-++.+|+.|...
T Consensus 18 vK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 444455555566667777777877777777777766543
No 311
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=22.36 E-value=2.2e+02 Score=20.48 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 044691 46 RRSRMRKQKHLDDLMAQVAQLRKDNHQIITSINIATQHY 84 (172)
Q Consensus 46 RRSR~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~q~~ 84 (172)
.-||.-=-+..++|+.-+..|+.+|..-...+..++.++
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445566666666666665555555554443
No 312
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=22.23 E-value=3.1e+02 Score=22.02 Aligned_cols=33 Identities=9% Similarity=0.288 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 044691 49 RMRKQKHLDDLMAQVAQLRKDNHQIITSINIAT 81 (172)
Q Consensus 49 R~RKq~~leeLe~qv~~L~~EN~~L~~~l~~l~ 81 (172)
..||.+-++.|..++..|+.+-..|...+..-.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~ 46 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSAND 46 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777778888888777777766665433
No 313
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=22.12 E-value=2e+02 Score=22.35 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=11.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 044691 62 QVAQLRKDNHQIITSINIATQH 83 (172)
Q Consensus 62 qv~~L~~EN~~L~~~l~~l~q~ 83 (172)
++..|+.|...+..+|..-+++
T Consensus 6 e~~~Le~Ek~~~~~rI~~K~~~ 27 (155)
T 2aze_A 6 ECQNLEVERQRRLERIKQKQSQ 27 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555443333
No 314
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=22.09 E-value=60 Score=28.47 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 044691 93 VLRAQLGELTHRLHSLNEIISFLD 116 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il~~~~ 116 (172)
.|++++.+|..+++.|...+..++
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVE 95 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554443
No 315
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=22.04 E-value=1.6e+02 Score=18.74 Aligned_cols=21 Identities=10% Similarity=0.346 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044691 90 ENSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 90 EN~~LRaq~~eL~~rL~~l~~ 110 (172)
++...+..+..|..+...+..
T Consensus 41 q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 41 QHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHHHHHHHH
Confidence 333334444445444444443
No 316
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=22.00 E-value=70 Score=22.90 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044691 92 SVLRAQLGELTHRLHSLNEIISFLDA 117 (172)
Q Consensus 92 ~~LRaq~~eL~~rL~~l~~il~~~~~ 117 (172)
..|+++..+|+.++..+.+-++.+..
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35777777777777777777777764
No 317
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=21.93 E-value=1.9e+02 Score=19.65 Aligned_cols=24 Identities=13% Similarity=0.257 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 044691 57 DDLMAQVAQLRKDNHQIITSINIA 80 (172)
Q Consensus 57 eeLe~qv~~L~~EN~~L~~~l~~l 80 (172)
++|..+|..|...-.+....+-.|
T Consensus 6 ~eLkkevkKL~~~A~q~kmdLHDL 29 (71)
T 2js5_A 6 EELKAKLKKLNAQATALKMDLHDL 29 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHH
Confidence 344444444444444444443333
No 318
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=21.86 E-value=1.8e+02 Score=19.25 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 93 VLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 93 ~LRaq~~eL~~rL~~l~~il 112 (172)
.++.++..|..++..|...+
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 82 EVQEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666655555555444
No 319
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=21.30 E-value=1.2e+02 Score=24.92 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=21.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044691 39 ISNRESARRSRMRKQKHLDDLMAQVAQLRKDNHQII 74 (172)
Q Consensus 39 lsNRESARRSR~RKq~~leeLe~qv~~L~~EN~~L~ 74 (172)
..-...+.-+-.-|++.+.++++++..|+.....|.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (321)
T 3p7i_A 276 QSVKDNKGLNEQDKLAKTTAIQAQLDDLDRLNNALS 311 (321)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344555677777777777777765555443
No 320
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=21.17 E-value=1.7e+02 Score=18.60 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044691 78 NIATQHYMNIESENSVLRAQLGELTHRLHSLNEII 112 (172)
Q Consensus 78 ~~l~q~~~~le~EN~~LRaq~~eL~~rL~~l~~il 112 (172)
..+++-+..|...-..|.....++.+++..|+.++
T Consensus 7 ~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 7 LRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444
No 321
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.06 E-value=1.9e+02 Score=21.94 Aligned_cols=12 Identities=17% Similarity=0.072 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q 044691 58 DLMAQVAQLRKD 69 (172)
Q Consensus 58 eLe~qv~~L~~E 69 (172)
.||.++..+...
T Consensus 4 ~l~~~~~~~~~~ 15 (192)
T 2gkw_A 4 LLESQLSRHDQM 15 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 322
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=20.89 E-value=2.4e+02 Score=20.23 Aligned_cols=46 Identities=22% Similarity=0.143 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 044691 56 LDDLMAQVAQLRKDNHQIITSINIATQHYMNIE---SENSVLRAQLGEL 101 (172)
Q Consensus 56 leeLe~qv~~L~~EN~~L~~~l~~l~q~~~~le---~EN~~LRaq~~eL 101 (172)
+++|..++...+.-...-...|..+++...... ....+|++|+.-.
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY 52 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIY 52 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444444433333333444443333333 4455555555443
No 323
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=20.72 E-value=67 Score=27.54 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 044691 91 NSVLRAQLGELTHRLHSLNE 110 (172)
Q Consensus 91 N~~LRaq~~eL~~rL~~l~~ 110 (172)
...|+.++..|..+|..+..
T Consensus 37 le~L~~KI~~LE~~v~~q~~ 56 (323)
T 1lwu_B 37 LEHLRAKMQRMEEAIKTQKE 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 324
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=20.70 E-value=3e+02 Score=21.33 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhh
Q 044691 103 HRLHSLNEIISFLDA 117 (172)
Q Consensus 103 ~rL~~l~~il~~~~~ 117 (172)
..+..+.+++..+..
T Consensus 82 ~~i~~~~~l~~~~~~ 96 (179)
T 2f42_A 82 KYLMDMDELFSQVDE 96 (179)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 345566666665543
No 325
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=20.55 E-value=58 Score=27.98 Aligned_cols=6 Identities=17% Similarity=0.141 Sum_probs=2.2
Q ss_pred HHHHHH
Q 044691 60 MAQVAQ 65 (172)
Q Consensus 60 e~qv~~ 65 (172)
|.+|..
T Consensus 10 E~~Il~ 15 (319)
T 1fzc_C 10 EASILT 15 (319)
T ss_dssp CTTTTT
T ss_pred HHHhhC
Confidence 333333
No 326
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.48 E-value=1.3e+02 Score=26.54 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044691 89 SENSVLRAQLGELTHRLH 106 (172)
Q Consensus 89 ~EN~~LRaq~~eL~~rL~ 106 (172)
.+...|..++..+..++.
T Consensus 46 ~~~~~l~~~~~~~~~e~~ 63 (405)
T 4b4t_J 46 AQRNALNDKVRFIKDELR 63 (405)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 327
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=20.18 E-value=76 Score=20.52 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 044691 52 KQKHLDDLMAQVAQLRKDNHQI 73 (172)
Q Consensus 52 Kq~~leeLe~qv~~L~~EN~~L 73 (172)
+..+++.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888887655444
No 328
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.17 E-value=2.4e+02 Score=20.10 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=4.9
Q ss_pred ccCcCCC--Cccc
Q 044691 152 PLNLSYL--NQPI 162 (172)
Q Consensus 152 p~~~~~~--~qpi 162 (172)
+.|+..- .-||
T Consensus 86 ~yqi~LkS~~GPI 98 (106)
T 2aze_B 86 NFQISLKSKQGPI 98 (106)
T ss_dssp CEEEEEECSSSCC
T ss_pred ceEEEEECCCCCE
Confidence 4554322 2466
Done!